Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002861
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 388 e-111
Alignment gi|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bo... 389 e-110
Alignment gi|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 351 4e-99
Alignment gi|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus]. 253 2e-67
Alignment gi|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 159 1e-40
>ref|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 389
Score = 388 bits (996), Expect(2) = e-111
Identities = 194/273 (71%), Positives = 219/273 (80%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
+TP LDKFIEDHLLP+ FR QVKEAIDI+C FLKERCF+ VR
Sbjct: 5 NTPAGSLDKFIEDHLLPDEEFRMQVKEAIDIICTFLKERCFRCAPHRVRVSKVVKGGSSG 64
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
TTLRGRSDADLVVFLT LTSF++QL+ R EFI+EIRRQLEACQ+E+ F+V FEVQ +
Sbjct: 65 KGTTLRGRSDADLVVFLTNLTSFQEQLERRGEFIEEIRRQLEACQREETFEVKFEVQKRQ 124
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
ENPRALSFVL SP+L Q VEFDVLPAFDALGQ T GY+P+ +YV+LI+ECK L +EGE
Sbjct: 125 WENPRALSFVLRSPKLNQAVEFDVLPAFDALGQLTKGYRPDSRVYVRLIQECKYLKREGE 184
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FS CFTELQRDFL+NRPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG
Sbjct: 185 FSPCFTELQRDFLKNRPTKLKSLIRLVKHWYQLCKEQLGKPLPPQYALELLTVYAWEQGC 244
Query: 831 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYN 929
KT F TAQGFQTVL+LVLK++KLCI+WE YN
Sbjct: 245 NKTGFITAQGFQTVLKLVLKYQKLCIYWEKNYN 277
Score = 34.7 bits (78), Expect(2) = e-111
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NP++ YLT+QL KPRPVIL
Sbjct: 280 NPIIEEYLTKQLAKPRPVIL 299
>ref|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bos taurus].
Length = 352
Score = 389 bits (998), Expect(2) = e-110
Identities = 193/273 (70%), Positives = 220/273 (80%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
DTP LDKFIEDHLL N FRTQVK+AIDI+C FLKERCF+ P R
Sbjct: 6 DTPAESLDKFIEDHLLSNEEFRTQVKQAIDIICTFLKERCFR--CAPHRVSKVVKGGSSG 63
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
TTLRGRSDADLVVFLT LTSF +QL+ R EFI+EIRRQLEACQ+E+ F+V EVQ +
Sbjct: 64 KGTTLRGRSDADLVVFLTNLTSFREQLERRGEFIEEIRRQLEACQREKTFEVKSEVQKRQ 123
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
ENPRALSFVL SP+L QEVEFDVLPAFDALGQ T GY+P+P+IYV+LI+EC++ +EGE
Sbjct: 124 WENPRALSFVLRSPKLDQEVEFDVLPAFDALGQLTKGYRPDPQIYVKLIQECENQRREGE 183
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FS CFTELQRDFL+ RP KLKSLIRLVKHWYQ CK H N LPPQYALELLTVYAWEQGS
Sbjct: 184 FSPCFTELQRDFLKERPAKLKSLIRLVKHWYQLCKMKHKNNLPPQYALELLTVYAWEQGS 243
Query: 831 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYN 929
K +FSTAQGF+TVLEL+LKH+ LCI+W+ YY+
Sbjct: 244 AKPEFSTAQGFRTVLELILKHQDLCIYWKKYYD 276
Score = 29.6 bits (65), Expect(2) = e-110
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
N ++ +YL +QL KPRPVIL
Sbjct: 279 NSIIRQYLKKQLAKPRPVIL 298
>ref|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 362
Score = 351 bits (901), Expect(2) = 4e-99
Identities = 176/274 (64%), Positives = 206/274 (75%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
T LDKFI+DHLLP+ F+ QV EAIDI+C FLKE CFQ + PVR
Sbjct: 7 TQANKLDKFIKDHLLPHEEFQRQVNEAIDIICTFLKETCFQESTHPVRVSKVVKGGSSGK 66
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
TTL+ SDADLVVFLT LTSF++ + R FI+EIRRQLEA Q+++ F+V FEV R+
Sbjct: 67 GTTLKDLSDADLVVFLTNLTSFQENFEHRVRFIKEIRRQLEAYQRQKTFEVEFEVLKQRK 126
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 653
RALSFVL SP Q V+FDVLPAFDAL Q T YKPNP+IYVQLI+EC++L +EGEF
Sbjct: 127 RKRRALSFVLRSPWFCQGVKFDVLPAFDALAQVTEDYKPNPQIYVQLIQECENLRREGEF 186
Query: 654 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSG 833
S CFTELQR FL+ RP KLKSLIRLVKHWYQ CKK HG KLP QYALELLT+YAWEQ
Sbjct: 187 SPCFTELQRAFLKERPAKLKSLIRLVKHWYQQCKKRHGKKLPSQYALELLTIYAWEQEGS 246
Query: 834 KTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
KT F TA+GF+TVLELVLKH+ LCI+W+ YY+F+
Sbjct: 247 KTKFRTAEGFRTVLELVLKHQDLCIYWKKYYDFE 280
Score = 29.6 bits (65), Expect(2) = 4e-99
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NP++ + L QL+KPRPVIL
Sbjct: 281 NPIITQCLKRQLEKPRPVIL 300
>ref|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus].
Length = 714
Score = 253 bits (645), Expect = 2e-67
Identities = 133/277 (48%), Positives = 180/277 (64%), Gaps = 4/277 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDKF++D L PN F+ Q+K+A+ I+C FL+E CF+ + ++
Sbjct: 344 TPGHLLDKFVKDFLQPNQTFQDQIKKALKIICSFLEENCFRHSTTKIQVIQGGSTVKG-- 401
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+ SDA LVVF L S+ R I+EI QLEAC++E+ F+V FE+ +
Sbjct: 402 -TALKTGSDASLVVFANSLKSYTSPKNERYNIIKEIHEQLEACRQEKDFEVKFEIS--KW 458
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECK--SLGKEG 647
+ P LSF L S L + V+FDVLPAF+ALG+ G P+P Y +LI K + EG
Sbjct: 459 KPPWVLSFTLKSKVLNESVDFDVLPAFNALGELKSGSTPSPRTYTELIHLYKPSDVFLEG 518
Query: 648 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWE 821
EFS CFT+LQR+F+R+ P KLK LIRL+KHWY+ C+K K LPP+YALELLT+YAWE
Sbjct: 519 EFSVCFTKLQRNFVRSLPLKLKDLIRLLKHWYKGCEKKLKQKGSLPPKYALELLTIYAWE 578
Query: 822 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNF 932
+GSG DF A+GF+TVLELV++++ LC+FW Y+F
Sbjct: 579 KGSGAQDFDMAEGFRTVLELVIQYQHLCVFWTVNYSF 615
Score = 186 bits (473), Expect = 2e-47
Identities = 113/292 (38%), Positives = 163/292 (55%), Gaps = 2/292 (0%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
+ P L++FI++HL P+ + + +++D +C L+E C T V
Sbjct: 10 EKPSEKLEEFIQNHLRPSEDCQKDIDQSVDTICEVLQEPCPSLTVTGVAKGGSYGRR--- 66
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
T LRG SD LVVF L F+DQ + + E + +I Q++ C+ K E+Q
Sbjct: 67 --TVLRGNSDGILVVFFGDLEQFQDQEKRQYELLSKIWAQMKHCESTWKLAAKMELQNTN 124
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEG 647
+ + ++ LS+ Q Q + F+VLPAF+ALG K + Y +L + + + G
Sbjct: 125 RSS--RVTIQLSTKQ--QSITFNVLPAFNALGL---SEKSSLWTYRELKRSLDMVKARPG 177
Query: 648 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN-KLPPQYALELLTVYAWEQ 824
EFS CFTELQ F N P+KLK LI LVKHW+Q C++ N L P YALELLTVYAWEQ
Sbjct: 178 EFSVCFTELQEKFFSNYPSKLKDLILLVKHWFQKCQEKLINPSLLPPYALELLTVYAWEQ 237
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSRNP 980
G G DF A+G +TVL L+ K ++LC++W YNF ++ +I LS + P
Sbjct: 238 GCGAEDFDMAEGVRTVLRLIEKQEQLCVYWTVNYNFGDETVRNILLSQLQAP 289
>ref|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Bos taurus].
Length = 352
Score = 159 bits (402), Expect(2) = 1e-40
Identities = 101/293 (34%), Positives = 162/293 (55%), Gaps = 12/293 (4%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTAD-PVRXXXXXXXXXX 287
DTP L+ F+ ++ V +A+ V FLK++ F+G +
Sbjct: 9 DTPASRLNSFVAQCQHNIKEWKEDVVKAVQSVEKFLKKQRFRGDHGLDQKVLKVIRVGSF 68
Query: 288 XXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTP 467
T LR ++ +LV+FL+ +SF+++ + + L C+K F +Q
Sbjct: 69 GNGTVLRNHAEVELVMFLSGFSSFQEEASNHNHH-EHVLSML--CEKLTDFPDLLHLQP- 124
Query: 468 RQENPR-------ALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC 626
+N R A++F + + +++++V ++PA+ L P ++P+PE+YV+LIK C
Sbjct: 125 --QNLRLVHGVTSAVAFTIQTWEMEEQVSVTIVPAYGVLRPSVPNFQPSPEVYVRLIKAC 182
Query: 627 KSLGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHW---YQTCKKPHGNKLPPQYALE 797
++LG FS F+ELQR+F++ +PTKLKSL+RLVKHW Y K P +LPP YALE
Sbjct: 183 RTLGY---FSPSFSELQRNFVKYKPTKLKSLLRLVKHWYLEYVKAKCPRA-ELPPMYALE 238
Query: 798 LLTVYAWEQGS-GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDD 953
LLT+YAWE G+ K F +G TVL L+ K+++LCI+W YY + ++D
Sbjct: 239 LLTIYAWETGTEEKERFRLDKGLVTVLLLLTKYQRLCIYWTKYYTLQNPVIED 291
Score = 26.2 bits (56), Expect(2) = 1e-40
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NPV+ ++ QLK+ RP+IL
Sbjct: 286 NPVIEDFVRNQLKEKRPIIL 305
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,999,441
Number of extensions: 955942
Number of successful extensions: 3459
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3439
Number of HSP's successfully gapped: 10
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002861
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus... 387 e-110
Alignment gi|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus... 280 5e-76
Alignment gi|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus... 265 4e-71
Alignment gi|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 203 2e-52
>ref|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus familiaris].
Length = 355
Score = 387 bits (995), Expect(2) = e-110
Identities = 188/276 (68%), Positives = 224/276 (81%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
DTP +DLD+FIE++LLP+T FR QVKEAI I+ FLKERCFQG A PVR
Sbjct: 6 DTPAKDLDRFIENYLLPDTQFRRQVKEAIHIISTFLKERCFQGAAHPVRVSKVVKGGSSG 65
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
TTLRGRSDADLVVFL L SF++QL+ R +FI EI+RQLEACQ+E+ F+V FEVQ+ +
Sbjct: 66 KGTTLRGRSDADLVVFLNNLKSFQEQLEKRGQFIWEIKRQLEACQREETFEVYFEVQSLQ 125
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
E PRALSFVL SPQL + VEFDVLPAFD LGQWT ++PNPE+Y++LI+EC++ G EGE
Sbjct: 126 WEKPRALSFVLKSPQLGEGVEFDVLPAFDVLGQWTNNHRPNPEVYIKLIQECENRGTEGE 185
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FSTCFTELQRDFLR RPTK+KSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWE+G+
Sbjct: 186 FSTCFTELQRDFLRQRPTKVKSLIRLVKHWYQKCKQKLGKPLPPQYALELLTVYAWERGN 245
Query: 831 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKT 938
+T+F TAQGFQTVL+LVL +++LCI W YYNF+T
Sbjct: 246 HQTEFITAQGFQTVLKLVLNYQQLCIHWTKYYNFET 281
Score = 30.0 bits (66), Expect(2) = e-110
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 938 PVVGRYLTEQLKKPRPVIL 994
P++ +YL QL KPRPVIL
Sbjct: 282 PIIKQYLMRQLAKPRPVIL 300
>ref|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus familiaris].
Length = 1087
Score = 280 bits (716), Expect(2) = 5e-76
Identities = 153/292 (52%), Positives = 191/292 (65%), Gaps = 3/292 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP DLDKFI D L PN F QV +A+D +C FLKE CFQ +A ++
Sbjct: 750 TPAGDLDKFISDFLQPNRQFLAQVNKAVDTICSFLKENCFQNSA--IKVLKVVKGGSLAK 807
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ++ + +V FE+ P++
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFAEQGNRRAEIISEIRAQLEACQQKMQLEVKFEI--PKR 865
Query: 474 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
EN R LSF L S L Q V+FDVLPAF+ALGQ Y+P ++YV LI S GE
Sbjct: 866 ENSRVLSFSLKSQTMLDQSVDFDVLPAFNALGQVVSSYRPPSQVYVDLIY---SYNNAGE 922
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-PHG-NKLPPQYALELLTVYAWEQ 824
+STCFTELQRDF+ +RPTKLKSLIRLVKHWY+ C K P G LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYRQCNKMPRGRGSLPPQHGLELLTVYAWEQ 982
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSRNP 980
G F+ AQGF+TVLELV ++++L ++W Y+ + ++ D R P
Sbjct: 983 GGQSAQFNMAQGFRTVLELVSQYRQLRVYWTVNYDNEDQTVRDFLSRQLRQP 1034
Score = 23.9 bits (50), Expect(2) = 5e-76
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 953 YLTEQLKKPRPVIL 994
+L+ QL++PRP+IL
Sbjct: 1026 FLSRQLRQPRPIIL 1039
Score = 211 bits (538), Expect(2) = 5e-56
Identities = 117/278 (42%), Positives = 168/278 (60%), Gaps = 7/278 (2%)
Frame = +3
Query: 123 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 302
+DLD+FI+DHL PN F+ QV +AI+++ G L+E+C + T
Sbjct: 414 KDLDRFIQDHLKPNPQFQKQVGKAINVILGCLREKCVY------KASRVSKGGSFGRGTD 467
Query: 303 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 482
LRG DA+LV+FL + DQ R E +QE++ QLE+ ++ ++ E P Q P
Sbjct: 468 LRGGCDAELVIFLNCFEDYRDQRARRPEILQEMQAQLESWWQDPVPGLSLEF--PEQTVP 525
Query: 483 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEFST 659
AL F L S L+ ++ ++PAFDA+GQ G KP P++Y L++ C+ GE +
Sbjct: 526 EALQFRLVSTALESWMDVCLVPAFDAVGQLCAGAKPAPQVYSTLLQSGCQG----GEHAA 581
Query: 660 CFTELQRDFLRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAWE 821
CF EL+R+F+ RP KLKSLI LVKHWY+ ++P LPP YALELLT++AWE
Sbjct: 582 CFAELRRNFVNVRPAKLKSLILLVKHWYRQVAAQNKGQQPACASLPPVYALELLTIFAWE 641
Query: 822 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
QG G+ F AQG +TVLELV +H++LC++W Y+F+
Sbjct: 642 QGCGEDSFKMAQGLKTVLELVQQHQQLCVYWTVNYSFE 679
Score = 25.4 bits (54), Expect(2) = 5e-56
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
+P + +L QL+KPRP+IL
Sbjct: 680 DPAIRTHLLGQLQKPRPLIL 699
Score = 183 bits (464), Expect = 3e-46
Identities = 109/292 (37%), Positives = 162/292 (55%), Gaps = 3/292 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP L + L P+ F+ A+ + L+ER + A P R
Sbjct: 6 TPAAALASLVARRLQPSAEFQRAAWRALGALATTLRERGDRAAAQPWRVLKTAKGGSAGR 65
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T LRG D+++V+FL S++D R E ++++ L++ ++ + FE T Q
Sbjct: 66 GTALRGGCDSEIVIFLDCFKSYKDHSVDRAEILKDLWDLLQSWWQKPIPGLNFE--TLWQ 123
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 650
+ P L F L+S L+ ++ ++PAFDALGQ G KP P++Y L+ C+ GE
Sbjct: 124 DRPGVLQFRLASTDLENWMDVSLVPAFDALGQLCAGAKPAPQVYSTLLHSGCQG----GE 179
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAWEQ 824
+ CF EL+R+F+ RP KLKSLI LVKHWY Q C++ + LPP YALELLT++AWEQ
Sbjct: 180 HAACFAELRRNFVNVRPAKLKSLILLVKHWYRQVCQEEAKREMLPPAYALELLTIFAWEQ 239
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSRNP 980
G GK FS AQG +TVL L+ ++++LC+FW Y F+ ++ S + P
Sbjct: 240 GCGKDAFSLAQGLRTVLGLIQEYRQLCVFWTLNYGFENPTVRSFLSSQLKKP 291
>ref|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus familiaris].
Length = 685
Score = 265 bits (678), Expect = 4e-71
Identities = 144/276 (52%), Positives = 182/276 (65%), Gaps = 3/276 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDKFI+D L PN F Q+ A+D +C FL++ CFQ +A V+
Sbjct: 342 TPGHLLDKFIKDFLQPNKNFLGQIAVAVDFICKFLQKNCFQHSATKVQKTVKGGSTGKG- 400
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+ SDADLVVF L S+ Q R I+EI +QL ACQ+E++F V FE+ +
Sbjct: 401 -TALKTGSDADLVVFPDSLKSYTSQKNERCRIIKEIHKQLVACQQEKEFAVKFEIS--KW 457
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG-E 650
+ PR LSF L S L + V FDVLPAF+ LGQ G P+P+IY +LI KS EG E
Sbjct: 458 KAPRVLSFSLKSKVLNESVNFDVLPAFNVLGQVNSGSPPSPKIYTELINLYKSSNAEGGE 517
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 824
FSTCFTELQ F+ +RPTK+K LIRLVKHWY+ C++ K LPP+YALELLT+YAWEQ
Sbjct: 518 FSTCFTELQCSFVASRPTKVKDLIRLVKHWYKQCERKLKKKGSLPPKYALELLTIYAWEQ 577
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNF 932
GSG +F TA+GF+TVLELV K+++LC+FW YNF
Sbjct: 578 GSGAENFDTAEGFRTVLELVTKYQQLCVFWTVNYNF 613
Score = 179 bits (454), Expect = 4e-45
Identities = 113/286 (39%), Positives = 161/286 (56%), Gaps = 3/286 (1%)
Frame = +3
Query: 129 LDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTTLR 308
LD+ I++ L P + Q+ +A+D +C L+E T T LR
Sbjct: 16 LDELIQNSLRPYGECQKQIDDAVDTICAALQE-----TEQIPTVLSVVQGGSYGRKTVLR 70
Query: 309 GRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENPRA 488
G SD +V+F++ L F+DQ + +++ + +I + L+ACQ K EVQ R
Sbjct: 71 GNSDGMIVIFVSDLEQFQDQKRSQDKILNKIWQLLKACQLAMKLPAKMEVQRFRD----G 126
Query: 489 LSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE--GEFSTC 662
L F LS+ Q + F VLPA++ALG KP+ +IY +L K + K GEFS C
Sbjct: 127 LIFQLSTKW--QSITFKVLPAYNALGL---SEKPSSQIYREL-KRALDMTKAHPGEFSIC 180
Query: 663 FTELQRDFLRNRPTKLKSLIRLVKHWYQTCK-KPHGNKLPPQYALELLTVYAWEQGSGKT 839
FTELQ+ F P KLK LI LVK+WYQ C+ K G+ L YALELLTVYAWEQG G
Sbjct: 181 FTELQQKFFHKYPRKLKDLILLVKYWYQQCQEKLKGSPLLTMYALELLTVYAWEQGCGAE 240
Query: 840 DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSRN 977
+F A+G +TVL L+ + ++LC++W YNF+ ++ +I LS R+
Sbjct: 241 NFDIAEGIRTVLGLIRQQEQLCVYWIVNYNFENETVRNILLSQLRS 286
>ref|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Canis lupus
familiaris].
Length = 519
Score = 203 bits (517), Expect(2) = 2e-52
Identities = 113/281 (40%), Positives = 165/281 (58%), Gaps = 6/281 (2%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXX 281
+TP L F+E L P ++ +VK+A + F +++CF+ VR
Sbjct: 9 ETPAERLLAFVERSLQPEGDWKEEVKDAWQRIERFFRDQCFRDELVLDQEVRVLKVVKGG 68
Query: 282 XXXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQ 461
TTL SD DLV+FL+ +SF+DQ R I I+++L K + +T Q
Sbjct: 69 SSGKGTTLNYSSDVDLVLFLSCFSSFQDQAAHRRSIISFIKKRLIQHSKNLAYSITIVPQ 128
Query: 462 TPRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGK 641
PR+LSF + + + + + DVLPA+DALG ++ +KP+PEIY LI S G
Sbjct: 129 KETTRVPRSLSFQVQARKTSEVIGVDVLPAYDALGHFSSDFKPSPEIYEDLI---TSGGP 185
Query: 642 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKP--HGNKLPPQYALELLTVYA 815
GEFS FTELQR F+++ P KLK+L+R+VKHWY C KP LPP+YA ELLT+YA
Sbjct: 186 PGEFSPSFTELQRHFVKSCPVKLKNLLRMVKHWYLQCLKPKYRNAALPPKYAFELLTIYA 245
Query: 816 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
WE G+ K+D F+ +GF+ V+EL+L ++ +C +W YY+F+
Sbjct: 246 WEIGTDKSDNFNLDEGFRAVMELLLDYEDICRYWTKYYDFQ 286
Score = 21.9 bits (45), Expect(2) = 2e-52
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
N V ++ +QLK+ RPVIL
Sbjct: 287 NETVRIHIKQQLKECRPVIL 306
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,606,779
Number of extensions: 987013
Number of successful extensions: 3637
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 11
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002861
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [H... 401 e-115
Alignment gi|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo... 401 e-115
Alignment gi|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo... 401 e-115
Alignment gi|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens]. 291 1e-80
Alignment gi|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo... 264 8e-71
Alignment gi|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo... 264 8e-71
Alignment gi|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 178 3e-45
Alignment gi|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 125 6e-29
Alignment gi|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [H... 59 7e-09
>ref|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [Homo sapiens].
Length = 414
Score = 401 bits (1031), Expect(2) = e-115
Identities = 199/275 (72%), Positives = 227/275 (82%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 831 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
KT F+TAQGF+TVLELV+ +++LCI+W YY+FK
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFK 279
Score = 32.7 bits (73), Expect(2) = e-115
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NP++ +YL QL KPRPVIL
Sbjct: 280 NPIIEKYLRRQLTKPRPVIL 299
>ref|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo sapiens].
Length = 400
Score = 401 bits (1031), Expect(2) = e-115
Identities = 199/275 (72%), Positives = 227/275 (82%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 831 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
KT F+TAQGF+TVLELV+ +++LCI+W YY+FK
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFK 279
Score = 32.7 bits (73), Expect(2) = e-115
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NP++ +YL QL KPRPVIL
Sbjct: 280 NPIIEKYLRRQLTKPRPVIL 299
>ref|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo sapiens].
Length = 364
Score = 401 bits (1031), Expect(2) = e-115
Identities = 199/275 (72%), Positives = 227/275 (82%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 831 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
KT F+TAQGF+TVLELV+ +++LCI+W YY+FK
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFK 279
Score = 32.7 bits (73), Expect(2) = e-115
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NP++ +YL QL KPRPVIL
Sbjct: 280 NPIIEKYLRRQLTKPRPVIL 299
>ref|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens].
Length = 1087
Score = 291 bits (744), Expect(2) = 1e-80
Identities = 155/283 (54%), Positives = 193/283 (68%), Gaps = 3/283 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP DLDKFI + L PN F QV +A+D +C FLKE CF+ + P++
Sbjct: 750 TPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFRNS--PIKVIKVVKGGSSAK 807
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ+E++F+V FEV +
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFEVS--KW 865
Query: 474 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
ENPR LSF L+S L Q V+FDVLPAFDALGQ G +P+ ++YV LI S GE
Sbjct: 866 ENPRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIH---SYSNAGE 922
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 824
+STCFTELQRDF+ +RPTKLKSLIRLVKHWYQ C K + LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQ 982
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDD 953
G + F+ A+GF+TVLELV ++++LCI+W YN K ++ D
Sbjct: 983 GGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGD 1025
Score = 28.1 bits (61), Expect(2) = 1e-80
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 944 VGRYLTEQLKKPRPVIL 994
VG +L +QL+KPRP+IL
Sbjct: 1023 VGDFLKQQLQKPRPIIL 1039
Score = 213 bits (542), Expect(2) = 3e-56
Identities = 118/277 (42%), Positives = 165/277 (59%), Gaps = 6/277 (2%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 296
P ++LD+FI+DHL P+ F+ QVK+AIDI+ L E C +
Sbjct: 412 PTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVH------KASRVSKGGSFGRG 465
Query: 297 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 476
T LR D +L++FL T ++DQ R E + E+R QLE+ ++Q + +Q P Q
Sbjct: 466 TDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQV--PSLSLQFPEQN 523
Query: 477 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 656
P AL F L S L+ + +LPAFDA+GQ + G KPNP++Y +L+ S +EGE
Sbjct: 524 VPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLT---SGCQEGEHK 580
Query: 657 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAW 818
CF EL+R+F+ RP KLK+LI LVKHWY+ K P LPP YALELLT++AW
Sbjct: 581 ACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALELLTIFAW 640
Query: 819 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYN 929
EQG + F+ AQGF+TVL LV +H++LC++W Y+
Sbjct: 641 EQGCRQDCFNMAQGFRTVLGLVQQHQQLCVYWTVNYS 677
Score = 24.6 bits (52), Expect(2) = 3e-56
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
+P + +L QL+KPRP++L
Sbjct: 680 DPAMRMHLLGQLRKPRPLVL 699
Score = 184 bits (466), Expect(2) = 8e-50
Identities = 110/279 (39%), Positives = 156/279 (55%), Gaps = 5/279 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LD+F+ L P F + + A+ + L+ER + A R
Sbjct: 6 TPAAALDRFVARRLQPRKEFVEKARRALGALAAALRERGGRLGAAAPRVLKTVKGGSSGR 65
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQK--FKVTFEVQTP 467
T L+G D++LV+FL S+ DQ R E + E+R LE+ + ++TF P
Sbjct: 66 GTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVPGLRLTF----P 121
Query: 468 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKE 644
Q P AL F L+S L+ ++ ++PAF+ LGQ G KP P++Y L+ C+
Sbjct: 122 EQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLNSGCQG---- 177
Query: 645 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAW 818
GE + CFTEL+R+F+ RP KLK+LI LVKHWY Q C + + LPP YALELLT++AW
Sbjct: 178 GEHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIFAW 237
Query: 819 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
EQG K FS A+G +TVL L+ +H+ LC+FW Y F+
Sbjct: 238 EQGCKKDAFSLAEGLRTVLGLIQQHQHLCVFWTVNYGFE 276
Score = 32.3 bits (72), Expect(2) = 8e-50
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
+P VG++L QLK+PRPVIL
Sbjct: 277 DPAVGQFLQRQLKRPRPVIL 296
>ref|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo sapiens].
Length = 719
Score = 264 bits (675), Expect = 8e-71
Identities = 145/280 (51%), Positives = 189/280 (67%), Gaps = 6/280 (2%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 467
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 468 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLG-KE 644
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 645 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 815
GEFSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 816 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
WEQGSG DF TA+GF+TVLELV ++++LCIFW+ YNF+
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFE 616
Score = 167 bits (422), Expect = 2e-41
Identities = 107/287 (37%), Positives = 153/287 (53%), Gaps = 7/287 (2%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 284
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 285 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 464
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 465 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 641
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 642 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 815
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 816 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI 956
WEQG K +F A+G +TVLEL+ +KLCI+W YNF+ ++ +I
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNI 279
>ref|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo sapiens].
Length = 687
Score = 264 bits (675), Expect = 8e-71
Identities = 145/280 (51%), Positives = 189/280 (67%), Gaps = 6/280 (2%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 467
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 468 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLG-KE 644
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 645 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 815
GEFSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 816 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
WEQGSG DF TA+GF+TVLELV ++++LCIFW+ YNF+
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFE 616
Score = 167 bits (422), Expect = 2e-41
Identities = 107/287 (37%), Positives = 153/287 (53%), Gaps = 7/287 (2%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 284
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 285 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 464
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 465 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 641
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 642 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 815
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 816 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI 956
WEQG K +F A+G +TVLEL+ +KLCI+W YNF+ ++ +I
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNI 279
>ref|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform a [Homo
sapiens].
Length = 514
Score = 178 bits (451), Expect(2) = 3e-45
Identities = 104/287 (36%), Positives = 158/287 (55%), Gaps = 7/287 (2%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 284
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 285 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 464
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 465 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 644
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 645 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQ---TCKKPHGNKLPPQYALELLTVYA 815
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ + P N LPP YALELLT+YA
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRAN-LPPLYALELLTIYA 243
Query: 816 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDD 953
WE G+ + + F +GF TV++L+L+++ +CI+W YY ++D
Sbjct: 244 WEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIED 290
Score = 22.7 bits (47), Expect(2) = 3e-45
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
N ++ + +QLKK RP+IL
Sbjct: 285 NAIIEDCVRKQLKKERPIIL 304
>ref|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform b [Homo
sapiens].
Length = 255
Score = 125 bits (314), Expect = 6e-29
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 284
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 285 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 464
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 465 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 644
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 645 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ 785
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ P + PQ
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQAHHPGSGRPHPQ 231
>ref|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [Homo sapiens].
Length = 172
Score = 58.9 bits (141), Expect = 7e-09
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 284
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 285 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 464
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 465 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQ--WTPGYK 587
F + Q + F+VL AF+AL + W G K
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSKHCWVSGEK 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,876,899
Number of extensions: 966627
Number of successful extensions: 3584
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3528
Number of HSP's successfully gapped: 20
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002861
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculu... 352 3e-98
Alignment gi|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus]. 350 2e-97
Alignment gi|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus]. 305 5e-83
Alignment gi|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus]. 280 9e-76
Alignment gi|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus muscul... 274 3e-75
Alignment gi|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculu... 273 6e-74
Alignment gi|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculu... 270 4e-73
Alignment gi|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus]. 271 6e-73
Alignment gi|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculu... 269 2e-72
Alignment gi|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [M... 257 1e-68
>ref|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculus].
Length = 367
Score = 352 bits (904), Expect(2) = 3e-98
Identities = 177/273 (64%), Positives = 207/273 (75%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 296
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 297 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 476
TTL+GRSDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGRSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 477 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 656
N R+LSF LS+P L QEVEFDVLPAFD LG + KPNP IY LI EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHGSINKKPNPLIYTILIWECTSLGKDGEFS 188
Query: 657 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 836
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWEQGNGC 248
Query: 837 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
+F+TAQGF+TVLELV+ ++ L I+W YY+F+
Sbjct: 249 NEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQ 281
Score = 25.4 bits (54), Expect(2) = 3e-98
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 944 VGRYLTEQLKKPRPVIL 994
V +YL QL+K RPVIL
Sbjct: 285 VSKYLHRQLRKARPVIL 301
>ref|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus].
Length = 367
Score = 350 bits (897), Expect(2) = 2e-97
Identities = 174/273 (63%), Positives = 207/273 (75%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 296
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 297 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 476
TTL+G+SDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGKSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 477 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 656
N R+LSF LS+P L QEVEFDVLPAFD LG KP+P IY LI+EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHVNTSSKPDPRIYAILIEECTSLGKDGEFS 188
Query: 657 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 836
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTV+AWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVFAWEQGNGC 248
Query: 837 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
+F+TAQGF+TVLELV+ ++ L I+W YY+F+
Sbjct: 249 YEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQ 281
Score = 25.4 bits (54), Expect(2) = 2e-97
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 944 VGRYLTEQLKKPRPVIL 994
V +YL QL+K RPVIL
Sbjct: 285 VSKYLHRQLRKARPVIL 301
>ref|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus].
Length = 364
Score = 305 bits (780), Expect = 5e-83
Identities = 157/285 (55%), Positives = 196/285 (68%), Gaps = 5/285 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP +LDKFI DHLLP++ F + + +D + FLKERCFQG PVR
Sbjct: 8 TPACELDKFIRDHLLPDSSFHAEARADVDFIGAFLKERCFQGATHPVRVSRVVMGGSYDE 67
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+ +S+A +VVFL LTSFE+QL+ R EFI+EIR+ L Q E+ FKV FEVQ+ +
Sbjct: 68 HTALKSKSEAKMVVFLNNLTSFEEQLKRRGEFIEEIRKHLCQLQDEKPFKVKFEVQSSEE 127
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDAL-----GQWTPGYKPNPEIYVQLIKECKSLG 638
N R+LSF LSSP+LQQEVEFDV PA+D L ++ Y N +IY QLI EC +L
Sbjct: 128 PNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNKYAELYLYN-KIYAQLIHECTTLK 186
Query: 639 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 818
KEGEFS CFT+L + FL +R KLK+LIRLVKHWYQ CK+ G LPPQYALELLTVYAW
Sbjct: 187 KEGEFSICFTDLHQSFLEDRAPKLKNLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAW 246
Query: 819 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDD 953
E GS +F+TAQGF+TVLELV K+K L I+W YY+F+ + +
Sbjct: 247 ESGSRDCEFNTAQGFRTVLELVTKYKWLRIYWTVYYDFRKTKVSE 291
>ref|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus].
Length = 1138
Score = 280 bits (717), Expect = 9e-76
Identities = 149/292 (51%), Positives = 189/292 (64%), Gaps = 3/292 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
T DLDKFI + L PN F TQVK A+D +C FLKE CF+ + ++
Sbjct: 801 TLAEDLDKFISEFLQPNRHFLTQVKRAVDTICSFLKENCFRNST--IKVLKVVKGGSSAK 858
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+GRSDADLVVFL+ F +Q R E I EI+ LEACQ+ F V FEV ++
Sbjct: 859 GTALQGRSDADLVVFLSCFRQFSEQGSHRAEIISEIQAHLEACQQMHSFDVKFEVS--KR 916
Query: 474 ENPRALSFVLSSPQL-QQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 650
+NPR LSF L+S L Q V+FDVLPAFDALGQ G +P+P +Y LI C + G E
Sbjct: 917 KNPRVLSFTLTSQTLLDQSVDFDVLPAFDALGQLRSGSRPDPRVYTDLIHSCSNAG---E 973
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 824
FSTCFTELQRDF+ +RPTKLKSLIRLVK+WYQ C K K LPPQ+ LELLTVYAWEQ
Sbjct: 974 FSTCFTELQRDFITSRPTKLKSLIRLVKYWYQQCNKTIKGKGSLPPQHGLELLTVYAWEQ 1033
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSRNP 980
G F+ A+GF+TVLEL++++++LC++W Y+ + ++ D R P
Sbjct: 1034 GGQNPQFNMAEGFRTVLELIVQYRQLCVYWTINYSAEDKTIGDFLKMQLRKP 1085
Score = 176 bits (446), Expect(2) = 2e-47
Identities = 109/276 (39%), Positives = 148/276 (53%), Gaps = 2/276 (0%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDK + +L P F V+ A+ + L++ +G+ P R
Sbjct: 6 TPAGALDKLVAHNLHPAPEFTAAVRGALGSLNITLQQHRARGSQRP-RVIRIAKGGAYAR 64
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T LRG +D +LV+FL SF DQ E + +R LE+ +TFE +
Sbjct: 65 GTALRGGTDVELVIFLDCFQSFGDQKTCHSETLGAMRMLLESWGGHPGPGLTFEFSQSKA 124
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 650
R L F L+S + ++ ++PAFD LGQ G KP P +Y L+ C++ GE
Sbjct: 125 S--RILQFRLASADGEHWIDVSLVPAFDVLGQPRSGVKPTPNVYSSLLSSHCQA----GE 178
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNKLPPQYALELLTVYAWEQG 827
+S CFTE +++F+ RP KLK+LI LVKHWY Q + LPP YALELLT++AWEQG
Sbjct: 179 YSACFTEPRKNFVNTRPAKLKNLILLVKHWYHQVQTRAVRATLPPSYALELLTIFAWEQG 238
Query: 828 SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
GK FS AQG +TVL L+ K LCIFW Y F+
Sbjct: 239 CGKDSFSLAQGLRTVLALIQHSKYLCIFWTENYGFE 274
Score = 32.0 bits (71), Expect(2) = 2e-47
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
+P VG +L QLK+PRPVIL
Sbjct: 275 DPAVGEFLRRQLKRPRPVIL 294
Score = 183 bits (465), Expect = 2e-46
Identities = 104/278 (37%), Positives = 155/278 (55%), Gaps = 7/278 (2%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 296
P +DLD FI+DHL P+ F+ QVK+AID + L+E+ +
Sbjct: 464 PSKDLDCFIQDHLRPSPQFQQQVKQAIDAILCCLREKSVY------KVLRVSKGGSFGRG 517
Query: 297 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 476
T LRG D +LV+F L F+ Q + E +++++ QL + ++ + ++
Sbjct: 518 TDLRGSCDVELVIFYKTLGDFKGQKPHQAEILRDMQAQLRHWCQNPVPGLSLQFI---EQ 574
Query: 477 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEF 653
P AL L+S L V+ VLPAFDA+G G KP P++Y L+ C++ GE
Sbjct: 575 KPNALQLQLASTDLSNRVDLSVLPAFDAVGPLKSGTKPQPQVYSSLLSSGCQA----GEH 630
Query: 654 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPH------GNKLPPQYALELLTVYA 815
+ CF EL+R+F+ P KLKSL+ LVKHWY+ + G+ PP YALELLT++A
Sbjct: 631 AACFAELRRNFINTCPPKLKSLMLLVKHWYRQVVTRYKGGEAAGDAPPPAYALELLTIFA 690
Query: 816 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYN 929
WEQG G+ FS A+G +T+L L+ +H+ LCI+W Y+
Sbjct: 691 WEQGCGEQKFSLAEGLRTILRLIQQHQSLCIYWTVNYS 728
>ref|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus musculus].
Length = 376
Score = 274 bits (701), Expect(2) = 3e-75
Identities = 151/273 (55%), Positives = 183/273 (67%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 296
P LDKFIE+HL P+T F ++E ID +C LK+R F+G PVR
Sbjct: 9 PASKLDKFIENHL-PDTSFCADLREVIDALCALLKDRSFRG---PVRRMRASKGVKGKG- 63
Query: 297 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 476
TTL+GRSDADLVVFL LTSFEDQL + I+EI++QL Q E++ V FEV + R
Sbjct: 64 TTLKGRSDADLVVFLNNLTSFEDQLNQQGVLIKEIKKQLCEVQHERRCGVKFEVHSLRSP 123
Query: 477 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 656
N RALSF LS+P L +EV+FDVLPA+D L KPN + Y LI GKEG+ S
Sbjct: 124 NSRALSFKLSAPDLLKEVKFDVLPAYDLLDHLNILKKPNQQFYANLISGRTPPGKEGKLS 183
Query: 657 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 836
CF L++ FL RPTKLK LIRLV HWYQ CK+ G+ LPPQYALELLTVYAWE GS
Sbjct: 184 ICFMGLRKYFLNCRPTKLKRLIRLVTHWYQLCKEKLGDPLPPQYALELLTVYAWEYGSRV 243
Query: 837 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
T F+TAQGF+TVLELV K+K+L I+W YY+F+
Sbjct: 244 TKFNTAQGFRTVLELVTKYKQLRIYWTVYYDFR 276
Score = 26.6 bits (57), Expect(2) = 3e-75
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 944 VGRYLTEQLKKPRPVIL 994
V YL +QLKK RPVIL
Sbjct: 280 VSEYLHQQLKKDRPVIL 296
>ref|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculus].
Length = 362
Score = 273 bits (698), Expect(2) = 6e-74
Identities = 141/276 (51%), Positives = 187/276 (67%), Gaps = 5/276 (1%)
Frame = +3
Query: 123 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 302
R+LD+FI D+L P+T F T+++ ID + FLKERCFQG A PVR T
Sbjct: 11 RELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTA 70
Query: 303 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 482
L+G+S+A +V+F LTSFE+QL+ R EF++EI++ L Q+E+ FKV FEVQ+ + N
Sbjct: 71 LKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNS 130
Query: 483 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE----IYVQLIKECKSLGKEGE 650
R+LSF LSSP+LQQEVEFDV PA+D L + P+ +Y QLI EC +L KEG+
Sbjct: 131 RSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGD 190
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 830
FS CFT+L ++F+R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY WE +
Sbjct: 191 FSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSN 250
Query: 831 -GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
+ +TA+ F+T LELV +K L I+W YY+F+
Sbjct: 251 KNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFR 286
Score = 23.5 bits (49), Expect(2) = 6e-74
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 953 YLTEQLKKPRPVIL 994
YL QLKK RP+IL
Sbjct: 293 YLCRQLKKARPLIL 306
>ref|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculus].
Length = 356
Score = 270 bits (690), Expect(2) = 4e-73
Identities = 146/281 (51%), Positives = 185/281 (65%), Gaps = 7/281 (2%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP+ LD FIED LLP+T F T+++ ID + FLKERCFQG P+R
Sbjct: 8 TPIWRLDNFIEDQLLPDTTFLTELRADIDSISAFLKERCFQGATHPMRVARVVMGGSYDE 67
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
L+GRS+A++VVF LTSFEDQL+ ++ FI+EIR+ L Q+E+ K+ FEVQ+ +
Sbjct: 68 HNALKGRSEANMVVFFNDLTSFEDQLKWQQVFIEEIRKHLLQLQQEKPCKLKFEVQSSEE 127
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE------IYVQLIKECKSL 635
N R+L+F L SP+ QQEVEFDV PA+DAL + GY + E +Y QLI EC +L
Sbjct: 128 PNTRSLTFKLCSPERQQEVEFDVQPAYDAL--YEGGYCKSFESINYNKVYAQLIHECTTL 185
Query: 636 GKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYA 815
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY
Sbjct: 186 EKEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYV 245
Query: 816 WEQG-SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
WE G AQ F+TVLELV K+K L I+W +Y+F+
Sbjct: 246 WEFGVQDSFGLHAAQCFRTVLELVTKYKCLLIYWTWFYDFR 286
Score = 23.9 bits (50), Expect(2) = 4e-73
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 938 PVVGRYLTEQLKKPRPVIL 994
P + YL Q+KK RP+IL
Sbjct: 287 PEISDYLHGQIKKARPLIL 305
>ref|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus].
Length = 742
Score = 271 bits (693), Expect = 6e-73
Identities = 144/277 (51%), Positives = 187/277 (67%), Gaps = 3/277 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP L+KFI+D L PN F Q+KEA+DI+C FLK CF + V
Sbjct: 382 TPSHLLNKFIKDFLQPNKLFLKQIKEAVDIICSFLKNVCFLNSDTKV--LKTVKGGSTAK 439
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+ SDAD+VVFL+ L S++ R +F+QEI++QLE + Q+++VTFE+ +
Sbjct: 440 GTALKRGSDADIVVFLSSLESYDSLKTNRSQFVQEIQKQLEEFVQAQEWEVTFEIS--KW 497
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLG-KEGE 650
+ PR LSF L S L + VEFDVLPA+DALGQ + PE Y LI+ C S KEGE
Sbjct: 498 KAPRVLSFTLKSKTLNESVEFDVLPAYDALGQLRSDFTLRPEAYKDLIELCASQDIKEGE 557
Query: 651 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 824
FS CFTELQR+F++ RPTKLKSL+RL+KHWY+ ++ K LPP+YALELLTVYAWEQ
Sbjct: 558 FSICFTELQRNFIQTRPTKLKSLLRLIKHWYKQYERKMKPKASLPPKYALELLTVYAWEQ 617
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
GSG DF A+GF+TVL+LV+K+++LCIFW YNF+
Sbjct: 618 GSGTDDFDIAEGFRTVLDLVIKYRQLCIFWTVNYNFE 654
Score = 146 bits (369), Expect = 2e-35
Identities = 98/291 (33%), Positives = 149/291 (51%), Gaps = 4/291 (1%)
Frame = +3
Query: 117 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 296
P + L+ +I+++L PN Q+ +A+D + L+ + PV+
Sbjct: 61 PSQKLEGYIQENLKPNRESLKQIDQAVDAIWDLLRSQI------PVKEVAKGGSYGRE-- 112
Query: 297 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 476
T LRG SD LV+F+ F+DQ++ ++ ++ I L+ +K+ +
Sbjct: 113 TALRGCSDGTLVLFMDCFQQFQDQIKYQDAYLDVIELWLKIHEKKSV------------K 160
Query: 477 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEGEF 653
+ AL +S P Q + +LP F+ L P+ +YV L K + GEF
Sbjct: 161 HEHALVVQVSVPG--QRILLQLLPVFNPLRS---NENPSSCVYVDLKKSMDQVRASPGEF 215
Query: 654 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ---YALELLTVYAWEQ 824
S CFT LQ+ F + P +LK LI LVKHWY+ C++ PPQ YALELLTVYAWEQ
Sbjct: 216 SDCFTTLQQRFFKKYPQRLKDLILLVKHWYEQCQEKWKTP-PPQPLLYALELLTVYAWEQ 274
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSRN 977
G DF AQG +TVL L+ + +LC++W YNF+ ++ +I L R+
Sbjct: 275 GCQAEDFDMAQGVRTVLRLIQRPTELCVYWTVNYNFEDETVRNILLHQLRS 325
>ref|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculus].
Length = 361
Score = 269 bits (688), Expect(2) = 2e-72
Identities = 148/280 (52%), Positives = 185/280 (66%), Gaps = 6/280 (2%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP+ LDKFIED LLP+T F T+++ ID + FL ERCFQG A PVR
Sbjct: 8 TPIWRLDKFIEDQLLPDTTFLTELRADIDSISAFLMERCFQGAAHPVRVSRVVMGGCYNE 67
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+GRS+A++VVFL LTSFEDQ + FI+EI R L Q+E+ K+ FEVQ+P++
Sbjct: 68 YTVLKGRSEANMVVFLINLTSFEDQFNGQVVFIEEIWRHLLQLQQEKLCKLKFEVQSPKE 127
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKP-----NPEIYVQLIKECKSLG 638
N R LSF LS P+ Q E+EFDV PA+DAL + +KP ++Y QL EC +L
Sbjct: 128 PNSRFLSFKLSCPERQHELEFDVQPAYDALYE-VRHFKPFDSSNYNKVYAQLTHECTTLE 186
Query: 639 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 818
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY W
Sbjct: 187 KEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYVW 246
Query: 819 EQGSGKT-DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFK 935
E G + TAQ F+TVLELV K+K+L I+W Y+F+
Sbjct: 247 EYGIHENPGLHTAQCFRTVLELVTKYKRLRIYWTWCYDFQ 286
Score = 22.3 bits (46), Expect(2) = 2e-72
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 944 VGRYLTEQLKKPRPVIL 994
+ YL Q+KK RP+IL
Sbjct: 289 ISDYLQGQIKKARPLIL 305
>ref|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [Mus musculus].
Length = 369
Score = 257 bits (656), Expect = 1e-68
Identities = 138/277 (49%), Positives = 183/277 (66%), Gaps = 5/277 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDKFIE HLL + F T+++ ++ + FLKERCFQG A P+R
Sbjct: 15 TPAWRLDKFIEGHLLGDITFLTELRTDVNSISAFLKERCFQGAAHPMRVSRVVMGGSYNR 74
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T L+GRS+ DL+VF LT F+DQ +L++E I+EI++ L Q+E++ + F+VQ+ Q
Sbjct: 75 YTVLKGRSEVDLLVFFNNLTCFDDQFKLQKEVIEEIQKHLCQFQQEKRLREKFKVQSSDQ 134
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEI----YVQLIKECKSLGK 641
N R++SF LS P+ QQEVEF + A+DAL + N EI Y +LI+EC LGK
Sbjct: 135 PNFRSVSFKLSYPKFQQEVEFHMQTAYDALYEVRRKENHNCEIYNKVYARLIRECTMLGK 194
Query: 642 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWE 821
EGEF+ CF ELQ+DFL RP +LK+LI LVKHWYQ CK+ LPPQYALELLTVYAWE
Sbjct: 195 EGEFNICFMELQQDFLWKRPCELKNLICLVKHWYQLCKEKLREPLPPQYALELLTVYAWE 254
Query: 822 -QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYN 929
+ K + TA+GF+TVLEL+ K+ L I+W YY+
Sbjct: 255 HELPDKHETQTARGFRTVLELITKYLCLRIYWTLYYD 291
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,260,162
Number of extensions: 807441
Number of successful extensions: 2924
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2873
Number of HSP's successfully gapped: 24
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002861
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa]. 504 e-147
Alignment gi|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa]. 267 8e-72
Alignment gi|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 147 5e-38
>ref|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa].
Length = 349
Score = 504 bits (1297), Expect(2) = e-147
Identities = 247/273 (90%), Positives = 253/273 (92%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP RDLDKFIEDHLLPNTCFRTQVKEAIDIVC FLKERCFQGTADPVR
Sbjct: 6 TPARDLDKFIEDHLLPNTCFRTQVKEAIDIVCRFLKERCFQGTADPVRVSKVVKGGSSGK 65
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
TTLRGRSDADLVVFLTKLTSFEDQL+ R EFIQEIRRQLEACQ+EQKFKVTFEVQ+PR+
Sbjct: 66 GTTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRR 125
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 653
ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS GKEGEF
Sbjct: 126 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSRGKEGEF 185
Query: 654 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSG 833
STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK HGNKLPPQYALELLTVYAWEQGS
Sbjct: 186 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSR 245
Query: 834 KTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNF 932
KTDFSTAQGFQTVLELVLKH+KLCIFWEAYY+F
Sbjct: 246 KTDFSTAQGFQTVLELVLKHQKLCIFWEAYYDF 278
Score = 36.6 bits (83), Expect(2) = e-147
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NPVVGR + +QLKKPRPVIL
Sbjct: 280 NPVVGRCMLQQLKKPRPVIL 299
>ref|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa].
Length = 707
Score = 267 bits (682), Expect = 8e-72
Identities = 147/278 (52%), Positives = 185/278 (66%), Gaps = 5/278 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LDKFI+D L P+ F Q K+A+DI+C FLKE CF+ +A V+
Sbjct: 341 TPSHHLDKFIKDFLQPDKTFLDQTKKAVDIICKFLKENCFRHSATKVQKIVKGGSTAKG- 399
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T SDADLVVF L S+ Q R I+EI +QLEACQ+ Q F+VTFE+ +
Sbjct: 400 --TALKNSDADLVVFTDLLKSYTSQKNERCTIIKEIHKQLEACQQAQDFEVTFEIS--KW 455
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS---LGKE 644
+ PR LSF L S L + V FDVLPAF+ALG G P+P+IY +LI KS LG
Sbjct: 456 KAPRVLSFSLKSKVLNECVHFDVLPAFNALGDLKSGSAPSPKIYAELISLYKSSDILG-- 513
Query: 645 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAW 818
GEFSTCFT+LQRDF+R++PTKLK LIRLVKHWY+ C++ K LPP+YALELLT+YAW
Sbjct: 514 GEFSTCFTKLQRDFVRSQPTKLKDLIRLVKHWYKWCERKLKQKGSLPPKYALELLTIYAW 573
Query: 819 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNF 932
E+GSG F TA+GF+TVL+L+ +++ LCIFW YNF
Sbjct: 574 EKGSGVLSFDTAEGFRTVLKLITEYQHLCIFWTVNYNF 611
Score = 180 bits (456), Expect = 1e-45
Identities = 106/290 (36%), Positives = 151/290 (52%), Gaps = 2/290 (0%)
Frame = +3
Query: 111 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 290
D P + L +F++++L P+ + Q+ + +D +C L Q
Sbjct: 10 DRPPQKLGEFVQNNLRPSEDCQKQIDQTVDTICKVL-----QDAEQLPLVISVARGGSYG 64
Query: 291 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 470
T LRG SD LV+F++ L F+DQ + E + +I QL+ CQ +K + E+Q
Sbjct: 65 RKTVLRGNSDGSLVIFISDLEKFQDQSKNHSELLSQIWAQLKCCQLTRKLEAKMEIQN-F 123
Query: 471 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEG 647
P + +Q + F +LPAF+ALG KP+P Y L + + G
Sbjct: 124 NSGPTTIQLFAK----EQSITFKILPAFNALGL---SEKPSPWTYRDLKRSLDMMKASPG 176
Query: 648 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLP-PQYALELLTVYAWEQ 824
EFS CFTELQ F N P KLK LI LVK+WYQ C++ P YALELLTVYAWEQ
Sbjct: 177 EFSVCFTELQERFFNNLPRKLKDLILLVKYWYQQCQEKLAVSFQLPVYALELLTVYAWEQ 236
Query: 825 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDDI*LSNSR 974
G G DF A+G +TVL L+ K +LC++W YNF+ ++ ++ L R
Sbjct: 237 GCGAEDFDIAEGLRTVLGLIRKPGELCVYWTVNYNFEDETVRNVLLGQLR 286
>ref|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Sus scrofa].
Length = 348
Score = 147 bits (370), Expect(2) = 5e-38
Identities = 98/283 (34%), Positives = 149/283 (52%), Gaps = 3/283 (1%)
Frame = +3
Query: 114 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 293
TP LD F+ L P+ + +V EA+ V FL ++CF G +
Sbjct: 6 TPASKLDTFVAKCLHPHKECKEEVLEAVRTVKKFLWQQCFPG-----KNVQVLEVGSFGN 60
Query: 294 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 473
T LR ++ +LV FL SF + L + + ++ + L +CQ F + +
Sbjct: 61 GTVLRDSTEVELVAFLCCFRSFRETEDL-DNMLDQLSKTLCSCQGLLAFDLKDVWLV--E 117
Query: 474 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 653
E RA++F + + L+ + F ++PA+ L P P+ E+YV LI+ K G F
Sbjct: 118 EVFRAIAFTIWTKNLEGPITFTIMPAYRDL---VPHGGPSAEVYVDLIEARKP---PGNF 171
Query: 654 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHG--NKLPPQYALELLTVYAWEQG 827
S F +LQR F+++RP KLKSL+RLVKHWY K +LPP YALELLT+YAWE G
Sbjct: 172 SPSFAKLQRSFVKHRPAKLKSLLRLVKHWYLKYVKARCPIARLPPLYALELLTIYAWEVG 231
Query: 828 SGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKTLSLDD 953
+ + F +G TV+ L+ +++ LCI+W YY F+ ++D
Sbjct: 232 TKAHERFHLDRGLVTVMCLLQEYQSLCIYWTNYYKFQNPIIED 274
Score = 29.3 bits (64), Expect(2) = 5e-38
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 935 NPVVGRYLTEQLKKPRPVIL 994
NP++ ++ EQLKK RP+IL
Sbjct: 269 NPIIEDFVREQLKKERPIIL 288
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,197,004
Number of extensions: 614980
Number of successful extensions: 2232
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2215
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002861
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 535 e-149
>Sscrofa_Chr14
|| Length = 153851969
Score = 535 bits (270), Expect = e-149
Identities = 291/298 (97%)
Strand = Plus / Plus
Query: 274 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41258545 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 41258604
Query: 334 tcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaagaattcatcc 393
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 41258605 tcttcctcaccaagctcacaagttttgaggatcagcttcggctccgaggagaattcatcc 41258664
Query: 394 aggaaattcggagacagctggaagcctgtcaaaaagaacaaaagtttaaagtgacgtttg 453
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41258665 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 41258724
Query: 454 aggtccagactccacgacaggagaacccccgtgccctcagcttcgtgctcagctcccccc 513
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41258725 aggtccagagtccacgacgggagaacccccgtgctctcagcttcgtgctcagctcccccc 41258784
Query: 514 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtcagtg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41258785 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtgagtg 41258842
Score = 535 bits (270), Expect = e-149
Identities = 291/298 (97%)
Strand = Plus / Plus
Query: 274 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41261746 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 41261805
Query: 334 tcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaagaattcatcc 393
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 41261806 tcttcctcaccaagctcacaagttttgaggatcagcttcggctccgaggagaattcatcc 41261865
Query: 394 aggaaattcggagacagctggaagcctgtcaaaaagaacaaaagtttaaagtgacgtttg 453
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41261866 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 41261925
Query: 454 aggtccagactccacgacaggagaacccccgtgccctcagcttcgtgctcagctcccccc 513
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41261926 aggtccagagtccacgacgggagaacccccgtgctctcagcttcgtgctcagctcccccc 41261985
Query: 514 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtcagtg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41261986 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtgagtg 41262043
Score = 410 bits (207), Expect = e-112
Identities = 229/235 (97%), Gaps = 1/235 (0%)
Strand = Plus / Plus
Query: 749 gtgtaagaagcctcatggaaataaactgcccccacagtatgccctggagctcctgacagt 808
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265364 gtgtaagaagactcatggaaataaactgcccccacagtatgccctggagctcctgacagt 41265423
Query: 809 ctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttcagac 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265424 ctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttcagac 41265483
Query: 869 tgttttggaattagtcctaaagcataagaagctttgcatcttctgggaagcatattataa 928
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 41265484 tgttttggaattagtcctaaagcataagaagctttgcatcttctggaaaacatattatga 41265543
Query: 929 cttt-aaaaccctgtcgttggacgatatctgactgagcaactcaagaaacccagg 982
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41265544 ctttaaaaaccctgtcattggacgatatctgactgagcaactcaagaaacccagg 41265598
Score = 345 bits (174), Expect = 3e-92
Identities = 183/186 (98%)
Strand = Plus / Plus
Query: 564 ggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatcaaagag 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 41263089 ggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatccaagag 41263148
Query: 624 tgcaagtccctagggaaagagggcgagttttccacctgcttcacggagctgcagcgagac 683
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263149 tgcaagtcccgagggaaagagggcgagttttccacctgcttcacggagctgcagcgagac 41263208
Query: 684 ttcctgaggaaccgaccaaccaagctgaagagcctcatccgccttgtcaagcactggtac 743
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263209 ttcctgaggaaccgacctaccaagctgaagagcctcatccgccttgtcaagcactggtac 41263268
Query: 744 cagacg 749
||||||
Sbjct: 41263269 cagacg 41263274
Score = 295 bits (149), Expect = 2e-77
Identities = 161/165 (97%)
Strand = Plus / Plus
Query: 112 atacccctgttagggacctagacaagttcatcgaagaccacctcctgccaaacacatgtt 171
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41260734 atacccctgctagggacctagacaagttcatcgaagaccacctcctgccaaacacgtgtt 41260793
Query: 172 tccgaacgcaggtcaaggaagccatcgacatcgtctgcggtttcctgaaggagaggtgct 231
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 41260794 tccgaacgcaggtcaaggaagccatcgacatcgtctgcagtttcctgaaggagaggtgct 41260853
Query: 232 tccaggggaccgccgaccctgttcgcgtctccaaagttgtgaagg 276
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 41260854 tccaggggaccgcccaccctgttcgcgtctccaaagttgtgaagg 41260898
Score = 272 bits (137), Expect = 3e-70
Identities = 143/145 (98%)
Strand = Plus / Plus
Query: 132 gacaagttcatcgaagaccacctcctgccaaacacatgtttccgaacgcaggtcaaggaa 191
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 41257553 gacaagttcatcgaagaccacctcctgccaaacacgtgtttccgaacgcaggtcaaggaa 41257612
Query: 192 gccatcgacatcgtctgcggtttcctgaaggagaggtgcttccaggggaccgccgaccct 251
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 41257613 gccatcgacatcgtctgcggtttcctgaaggagaggtgcttctaggggaccgccgaccct 41257672
Query: 252 gttcgcgtctccaaagttgtgaagg 276
|||||||||||||||||||||||||
Sbjct: 41257673 gttcgcgtctccaaagttgtgaagg 41257697
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,439,363
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 6
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)