Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002863
(2392 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075197.1| serine/threonine-protein phosphatase 2A 56 k... 759 0.0
Alignment gi|NP_001076937.1| serine/threonine-protein phosphatase 2A 56 k... 622 e-178
Alignment gi|NP_001068700.1| serine/threonine-protein phosphatase 2A 56 k... 593 e-169
Alignment gi|NP_001193287.1| serine/threonine-protein phosphatase 2A 56 k... 544 e-154
Alignment gi|NP_001076845.1| serine/threonine-protein phosphatase 2A 56 k... 536 e-152
Alignment gi|XP_002684527.1| PREDICTED: protein phosphatase 2, regulatory... 536 e-152
Alignment gi|XP_002684526.1| PREDICTED: protein phosphatase 2, regulatory... 536 e-152
>ref|NP_001075197.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
alpha isoform [Bos taurus].
Length = 489
Score = 759 bits (1959), Expect = 0.0
Identities = 394/467 (84%), Positives = 395/467 (84%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
EKVDGFTRKSV PELHPLPQLKDATSNEQQELFCQKLQQC
Sbjct: 22 EKVDGFTRKSVRKAQRQKRSQGSSQFRSQCSQPELHPLPQLKDATSNEQQELFCQKLQQC 81
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTL
Sbjct: 82 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLPPS 141
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS
Sbjct: 142 DNPDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 201
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN
Sbjct: 202 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 261
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW
Sbjct: 262 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 321
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE
Sbjct: 322 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 381
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYX 1568
YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY
Sbjct: 382 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYK 441
Query: 1569 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAYNMHSILSNTSD 1709
NSAYNMHSILSNT+D
Sbjct: 442 AERQREKKKELEREELWKKLEELKLKKALEKQNSAYNMHSILSNTND 488
>ref|NP_001076937.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
epsilon isoform [Bos taurus].
Length = 467
Score = 622 bits (1603), Expect = e-178
Identities = 306/419 (73%), Positives = 349/419 (83%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEPVIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFW 310
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 311 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 370
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 371 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 429
>ref|NP_001068700.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
beta isoform [Bos taurus].
Length = 496
Score = 593 bits (1529), Expect = e-169
Identities = 290/419 (69%), Positives = 341/419 (81%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+R+S+ EL PLP LKD ++E EL +KL QC
Sbjct: 26 DKVDGFSRRSLRRARPRRSHSSSQFRYQSNQQ-ELTPLPLLKDVPASELHELLSRKLAQC 84
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
++FDF+D V+DLK KE+KRA LNELVE V + RGV++E Y DI++MIS NIFRTL
Sbjct: 85 GVMFDFLDCVADLKGKEVKRAALNELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPS 144
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
SWPH+QLVYEFFLRFLESPDFQPS+AKRY+DQKFV LLELFDS
Sbjct: 145 ENPEFDPEEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 204
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRER++LKT+LHR+YGKFLGLRA+IRKQ ++IFLRFIYE EHFNGVAELLEILGSIIN
Sbjct: 205 EDPREREYLKTILHRVYGKFLGLRAYIRKQCSHIFLRFIYEFEHFNGVAELLEILGSIIN 264
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLK EHKQFL++VLIP+H+ K L++FHAQLAYCVVQFLEKD TLTE VIRGLLK+W
Sbjct: 265 GFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKDATLTEHVIRGLLKYW 324
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTC+QKEVMFLGE+EEILDVIEP+QF KI+EPLFKQ+++CVSS HFQVAERALYFWNNE
Sbjct: 325 PKTCTQKEVMFLGEMEEILDVIEPSQFVKIQEPLFKQVARCVSSPHFQVAERALYFWNNE 384
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YILSLIE+N +LP +FG+LY++SKEHWN TIV+L+YNVLKT MEMNGKLFD+LT+SY
Sbjct: 385 YILSLIEDNCHTVLPAVFGTLYQVSKEHWNQTIVSLIYNVLKTFMEMNGKLFDELTASY 443
>ref|NP_001193287.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
delta isoform [Bos taurus].
Length = 600
Score = 544 bits (1401), Expect = e-154
Identities = 265/390 (67%), Positives = 317/390 (81%), Gaps = 4/390 (1%)
Frame = +3
Query: 408 ELHPLPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVST 584
EL LP LKD+ + E++ELF QKL+QCC+LFDF+ D +SDLK KE+KRA LNE+VEY++
Sbjct: 97 ELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKFKEVKRAGLNEMVEYITH 156
Query: 585 NRGVIVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFL 755
+R V+ E+ Y + V M S N+FRTL A+WPH+QLVYEFFL
Sbjct: 157 SRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 216
Query: 756 RFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRK 935
RFLESPDFQP+IAK+YIDQKFV LL+LFDSEDPRERDFLKT+LHRIYGKFLGLRA+IR+
Sbjct: 217 RFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRR 276
Query: 936 QINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLAL 1115
QIN+IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL++VL+P+H K L++
Sbjct: 277 QINHIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSV 336
Query: 1116 FHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKK 1295
+H QLAYCVVQFLEK+++LTEPVI GLLKFWPKT S KEVMFL E+EEILDVIEP++F K
Sbjct: 337 YHPQLAYCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSK 396
Query: 1296 IEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHW 1475
+ EPLF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N ++LPIMF +LY+ SK HW
Sbjct: 397 VMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHW 456
Query: 1476 NPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
N TI L+YN LK MEMN KLFDD T Y
Sbjct: 457 NKTIHGLIYNALKLFMEMNQKLFDDCTQQY 486
>ref|NP_001076845.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform [Bos taurus].
Length = 524
Score = 536 bits (1382), Expect = e-152
Identities = 265/386 (68%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y ++V M + N+FRTL A+WPH+QLVYEFFLR LE
Sbjct: 87 ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRLLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|XP_002684527.1| PREDICTED: protein phosphatase 2, regulatory subunit B, gamma-like
isoform 2 [Bos taurus].
Length = 485
Score = 536 bits (1382), Expect = e-152
Identities = 265/386 (68%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y ++V M + N+FRTL A+WPH+QLVYEFFLR LE
Sbjct: 87 ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRLLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|XP_002684526.1| PREDICTED: protein phosphatase 2, regulatory subunit B, gamma-like
isoform 1 [Bos taurus].
Length = 524
Score = 536 bits (1382), Expect = e-152
Identities = 265/386 (68%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y ++V M + N+FRTL A+WPH+QLVYEFFLR LE
Sbjct: 87 ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRLLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,321,337
Number of extensions: 1480671
Number of successful extensions: 4050
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4034
Number of HSP's successfully gapped: 7
Length of query: 797
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 687
Effective length of database: 14,041,694
Effective search space: 9646643778
Effective search space used: 9646643778
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002863
(2392 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547400.2| PREDICTED: similar to protein phosphatase 2, re... 757 0.0
Alignment gi|XP_537472.2| PREDICTED: similar to epsilon isoform of regula... 622 e-178
Alignment gi|XP_865732.1| PREDICTED: similar to epsilon isoform of regula... 613 e-175
Alignment gi|XP_865670.1| PREDICTED: similar to epsilon isoform of regula... 610 e-174
Alignment gi|XP_865686.1| PREDICTED: similar to epsilon isoform of regula... 605 e-173
Alignment gi|XP_865610.1| PREDICTED: similar to epsilon isoform of regula... 604 e-172
Alignment gi|XP_865717.1| PREDICTED: similar to epsilon isoform of regula... 601 e-171
Alignment gi|XP_540876.1| PREDICTED: similar to beta isoform of regulator... 593 e-169
Alignment gi|XP_865702.1| PREDICTED: similar to epsilon isoform of regula... 578 e-165
Alignment gi|XP_865623.1| PREDICTED: similar to epsilon isoform of regula... 561 e-160
>ref|XP_547400.2| PREDICTED: similar to protein phosphatase 2, regulatory subunit B
(B56), alpha isoform [Canis familiaris].
Length = 566
Score = 757 bits (1954), Expect = 0.0
Identities = 394/468 (84%), Positives = 394/468 (84%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
EKVDGF RKSV ELHPLPQLKDATSNEQQELFCQKLQQC
Sbjct: 99 EKVDGFARKSVRKAQRQKRSQGSSQFRSQGSQAELHPLPQLKDATSNEQQELFCQKLQQC 158
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTL
Sbjct: 159 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLPPS 218
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS
Sbjct: 219 DNPDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 278
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN
Sbjct: 279 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 338
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW
Sbjct: 339 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 398
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE
Sbjct: 399 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 458
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYX 1568
YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY
Sbjct: 459 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYK 518
Query: 1569 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAYNMHSILSNTSDE 1712
NSAYNMHSILSNTSDE
Sbjct: 519 AERQREKKKELEREELWKKLEELKLKKALEKQNSAYNMHSILSNTSDE 566
>ref|XP_537472.2| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 1 [Canis familiaris].
Length = 467
Score = 622 bits (1603), Expect = e-178
Identities = 306/419 (73%), Positives = 349/419 (83%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEPVIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFW 310
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 311 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 370
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 371 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 429
>ref|XP_865732.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 10 [Canis familiaris].
Length = 468
Score = 613 bits (1580), Expect = e-175
Identities = 304/420 (72%), Positives = 347/420 (82%), Gaps = 1/420 (0%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMI-SANIFRTLXX 665
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++ ++ S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVCNIVVSCNIFRTLPP 130
Query: 666 XXXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFD 845
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFD
Sbjct: 131 SDSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFD 190
Query: 846 SEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSII 1025
SEDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSII
Sbjct: 191 SEDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSII 250
Query: 1026 NGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKF 1205
NGFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEPVIRGL+KF
Sbjct: 251 NGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKF 310
Query: 1206 WPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNN 1385
WPKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNN
Sbjct: 311 WPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNN 370
Query: 1386 EYILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
EYI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 371 EYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 430
>ref|XP_865670.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 6 [Canis familiaris].
Length = 487
Score = 610 bits (1572), Expect = e-174
Identities = 306/439 (69%), Positives = 349/439 (79%), Gaps = 20/439 (4%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEP--------- 1181
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEP
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVSIFAVISK 310
Query: 1182 -----------VIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISK 1328
VIRGL+KFWPKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+K
Sbjct: 311 SFKMTTFHEVHVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAK 370
Query: 1329 CVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNV 1508
CVSS HFQVAERALY+WNNEYI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNV
Sbjct: 371 CVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNV 430
Query: 1509 LKTLMEMNGKLFDDLTSSY 1565
LK MEMN +FD+LT++Y
Sbjct: 431 LKAFMEMNSTMFDELTATY 449
>ref|XP_865686.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 7 [Canis familiaris].
Length = 477
Score = 605 bits (1560), Expect = e-173
Identities = 302/429 (70%), Positives = 346/429 (80%), Gaps = 10/429 (2%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEPVIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFW 310
Query: 1209 PKTCSQ----------KEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVA 1358
PKTC+ VMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVA
Sbjct: 311 PKTCTGTVNISRLSTCATVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVA 370
Query: 1359 ERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGK 1538
ERALY+WNNEYI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN
Sbjct: 371 ERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNST 430
Query: 1539 LFDDLTSSY 1565
+FD+LT++Y
Sbjct: 431 MFDELTATY 439
>ref|XP_865610.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 2 [Canis familiaris].
Length = 497
Score = 604 bits (1558), Expect = e-172
Identities = 307/449 (68%), Positives = 350/449 (77%), Gaps = 30/449 (6%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFV--------- 821
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQVSQDILF 190
Query: 822 -----------------QQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNI 950
QQLLELFDSEDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNI
Sbjct: 191 FLIPILILKSLYAVFHLQQLLELFDSEDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNI 250
Query: 951 FLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ- 1127
FLRF+YETEHFNGVAELLEILGSIINGFALPLKAEHKQFL+KVLIP+HT + L+LFHAQ
Sbjct: 251 FLRFVYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQV 310
Query: 1128 ---LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKI 1298
LAYC+VQFLEKD +LTEPVIRGL+KFWPKTCSQKEVMFLGE+EEILDVIEP+QF KI
Sbjct: 311 EFYLAYCIVQFLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKI 370
Query: 1299 EEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWN 1478
+EPLFKQI+KCVSS HFQVAERALY+WNNEYI+SLIEEN + ILPIMF SLY+ISKEHWN
Sbjct: 371 QEPLFKQIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWN 430
Query: 1479 PTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
P IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 431 PAIVALVYNVLKAFMEMNSTMFDELTATY 459
>ref|XP_865717.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 9 [Canis familiaris].
Length = 460
Score = 601 bits (1549), Expect = e-171
Identities = 300/419 (71%), Positives = 342/419 (81%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHA QFLEKD +LTEPVIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHA-------QFLEKDPSLTEPVIRGLMKFW 303
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 304 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 363
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 364 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 422
>ref|XP_540876.1| PREDICTED: similar to beta isoform of regulatory subunit B56, protein
phosphatase 2A isoform 1 [Canis familiaris].
Length = 497
Score = 593 bits (1529), Expect = e-169
Identities = 290/419 (69%), Positives = 341/419 (81%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+R+S+ EL PLP LKD ++E EL +KL QC
Sbjct: 26 DKVDGFSRRSLRRARPRRSHSSSQFRYQSNQQ-ELTPLPLLKDVPASELHELLSRKLAQC 84
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
++FDF+D V+DLK KE+KRA LNELVE V + RGV++E Y DI++MIS NIFRTL
Sbjct: 85 GVMFDFLDCVADLKGKEVKRAALNELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPS 144
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
SWPH+QLVYEFFLRFLESPDFQPS+AKRY+DQKFV LLELFDS
Sbjct: 145 ENPEFDPEEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 204
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRER++LKT+LHR+YGKFLGLRA+IRKQ ++IFLRFIYE EHFNGVAELLEILGSIIN
Sbjct: 205 EDPREREYLKTILHRVYGKFLGLRAYIRKQCSHIFLRFIYEFEHFNGVAELLEILGSIIN 264
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLK EHKQFL++VLIP+H+ K L++FHAQLAYCVVQFLEKD TLTE VIRGLLK+W
Sbjct: 265 GFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKDATLTEHVIRGLLKYW 324
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTC+QKEVMFLGE+EEILDVIEP+QF KI+EPLFKQ+++CVSS HFQVAERALYFWNNE
Sbjct: 325 PKTCTQKEVMFLGEMEEILDVIEPSQFVKIQEPLFKQVARCVSSPHFQVAERALYFWNNE 384
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YILSLIE+N +LP +FG+LY++SKEHWN TIV+L+YNVLKT MEMNGKLFD+LT+SY
Sbjct: 385 YILSLIEDNCHTVLPAVFGTLYQVSKEHWNQTIVSLIYNVLKTFMEMNGKLFDELTASY 443
>ref|XP_865702.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 8 [Canis familiaris].
Length = 449
Score = 578 bits (1491), Expect = e-165
Identities = 291/419 (69%), Positives = 332/419 (79%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQ VIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQ------------------VIRGLMKFW 292
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 293 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 352
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 353 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 411
>ref|XP_865623.1| PREDICTED: similar to epsilon isoform of regulatory subunit B56,
protein phosphatase 2A isoform 3 [Canis familiaris].
Length = 439
Score = 561 bits (1447), Expect = e-160
Identities = 285/419 (68%), Positives = 324/419 (77%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT VIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHT----------------------------VIRGLMKFW 282
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 283 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 342
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 343 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 401
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,114,495
Number of extensions: 1515562
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4191
Number of HSP's successfully gapped: 27
Length of query: 797
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 686
Effective length of database: 15,174,208
Effective search space: 10409506688
Effective search space used: 10409506688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002863
(2392 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006234.1| serine/threonine-protein phosphatase 2A 56 kDa ... 753 0.0
Alignment gi|NP_001186685.1| serine/threonine-protein phosphatase 2A 56 k... 720 0.0
Alignment gi|NP_006237.1| serine/threonine-protein phosphatase 2A 56 kDa ... 622 e-178
Alignment gi|NP_006235.1| serine/threonine-protein phosphatase 2A 56 kDa ... 595 e-170
Alignment gi|NP_001155198.1| serine/threonine-protein phosphatase 2A 56 k... 548 e-155
Alignment gi|NP_006236.1| serine/threonine-protein phosphatase 2A 56 kDa ... 544 e-154
Alignment gi|NP_848702.1| serine/threonine-protein phosphatase 2A 56 kDa ... 539 e-153
Alignment gi|NP_848701.1| serine/threonine-protein phosphatase 2A 56 kDa ... 539 e-153
Alignment gi|NP_002710.2| serine/threonine-protein phosphatase 2A 56 kDa ... 539 e-153
Alignment gi|NP_001155197.1| serine/threonine-protein phosphatase 2A 56 k... 538 e-153
>ref|NP_006234.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
alpha isoform isoform 1 [Homo sapiens].
Length = 486
Score = 753 bits (1945), Expect = 0.0
Identities = 393/468 (83%), Positives = 393/468 (83%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
EKVDGFTRKSV ELHPLPQLKDATSNEQQELFCQKLQQC
Sbjct: 19 EKVDGFTRKSVRKAQRQKRSQGSSQFRSQGSQAELHPLPQLKDATSNEQQELFCQKLQQC 78
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTL
Sbjct: 79 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLPPS 138
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS
Sbjct: 139 DNPDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 198
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN
Sbjct: 199 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 258
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW
Sbjct: 259 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 318
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE
Sbjct: 319 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 378
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYX 1568
YILSLIEENIDKILPIMF SLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY
Sbjct: 379 YILSLIEENIDKILPIMFASLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYK 438
Query: 1569 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAYNMHSILSNTSDE 1712
NSAYNMHSILSNTS E
Sbjct: 439 AERQREKKKELEREELWKKLEELKLKKALEKQNSAYNMHSILSNTSAE 486
>ref|NP_001186685.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
alpha isoform isoform 2 [Homo sapiens].
Length = 429
Score = 720 bits (1859), Expect = 0.0
Identities = 372/428 (86%), Positives = 374/428 (87%)
Frame = +3
Query: 429 LKDATSNEQQELFCQKLQQCCILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVES 608
+ +ATSNEQQELFCQKLQQCCILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVES
Sbjct: 2 IMNATSNEQQELFCQKLQQCCILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVES 61
Query: 609 AYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPS 788
AYSDIVKMISANIFRTL ASWPHIQLVYEFFLRFLESPDFQPS
Sbjct: 62 AYSDIVKMISANIFRTLPPSDNPDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPS 121
Query: 789 IAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIY 968
IAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIY
Sbjct: 122 IAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIY 181
Query: 969 ETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQ 1148
ETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQ
Sbjct: 182 ETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQ 241
Query: 1149 FLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISK 1328
FLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISK
Sbjct: 242 FLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISK 301
Query: 1329 CVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNV 1508
CVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMF SLYKISKEHWNPTIVALVYNV
Sbjct: 302 CVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFASLYKISKEHWNPTIVALVYNV 361
Query: 1509 LKTLMEMNGKLFDDLTSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAYNMHS 1688
LKTLMEMNGKLFDDLTSSY NSAYNMHS
Sbjct: 362 LKTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELKLKKALEKQNSAYNMHS 421
Query: 1689 ILSNTSDE 1712
ILSNTS E
Sbjct: 422 ILSNTSAE 429
>ref|NP_006237.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
epsilon isoform [Homo sapiens].
Length = 467
Score = 622 bits (1603), Expect = e-178
Identities = 306/419 (73%), Positives = 349/419 (83%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD S+EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPSSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEPVIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFW 310
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 311 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 370
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 371 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 429
>ref|NP_006235.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
beta isoform [Homo sapiens].
Length = 497
Score = 595 bits (1534), Expect = e-170
Identities = 291/419 (69%), Positives = 341/419 (81%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+R+S+ EL PLP LKD ++E EL +KL QC
Sbjct: 26 DKVDGFSRRSLRRARPRRSHSSSQFRYQSNQQ-ELTPLPLLKDVPASELHELLSRKLAQC 84
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
++FDF+D V+DLK KE+KRA LNELVE V + RGV++E Y DI++MIS NIFRTL
Sbjct: 85 GVMFDFLDCVADLKGKEVKRAALNELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPS 144
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
SWPH+QLVYEFFLRFLESPDFQPS+AKRY+DQKFV LLELFDS
Sbjct: 145 ENPEFDPEEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 204
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRER++LKT+LHR+YGKFLGLRA+IRKQ N+IFLRFIYE EHFNGVAELLEILGSIIN
Sbjct: 205 EDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLRFIYEFEHFNGVAELLEILGSIIN 264
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLK EHKQFL++VLIP+H+ K L++FHAQLAYCVVQFLEKD TLTE VIRGLLK+W
Sbjct: 265 GFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKDATLTEHVIRGLLKYW 324
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTC+QKEVMFLGE+EEILDVIEP+QF KI+EPLFKQ+++CVSS HFQVAERALYFWNNE
Sbjct: 325 PKTCTQKEVMFLGEMEEILDVIEPSQFVKIQEPLFKQVARCVSSPHFQVAERALYFWNNE 384
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YILSLIE+N +LP +FG+LY++SKEHWN TIV+L+YNVLKT MEMNGKLFD+LT+SY
Sbjct: 385 YILSLIEDNCHTVLPAVFGTLYQVSKEHWNQTIVSLIYNVLKTFMEMNGKLFDELTASY 443
>ref|NP_001155198.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform f [Homo sapiens].
Length = 540
Score = 548 bits (1411), Expect = e-155
Identities = 271/390 (69%), Positives = 314/390 (80%), Gaps = 4/390 (1%)
Frame = +3
Query: 408 ELHPLPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVST 584
EL LP LKD +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++
Sbjct: 78 ELQKLPSLKDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITH 137
Query: 585 NRGVIVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFL 755
NR VI E Y ++V M + N+FRTL A+WPH+QLVYEFFL
Sbjct: 138 NRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 197
Query: 756 RFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRK 935
RFLESPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRK
Sbjct: 198 RFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 257
Query: 936 QINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLAL 1115
QINNIF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L++
Sbjct: 258 QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSV 317
Query: 1116 FHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKK 1295
+H QLAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F K
Sbjct: 318 YHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 377
Query: 1296 IEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHW 1475
I EPLF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HW
Sbjct: 378 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHW 437
Query: 1476 NPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
N TI L+YN LK MEMN KLFDD T +
Sbjct: 438 NKTIHGLIYNALKLFMEMNQKLFDDCTQQF 467
>ref|NP_006236.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
delta isoform isoform 1 [Homo sapiens].
Length = 602
Score = 544 bits (1401), Expect = e-154
Identities = 265/390 (67%), Positives = 317/390 (81%), Gaps = 4/390 (1%)
Frame = +3
Query: 408 ELHPLPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVST 584
EL LP LKD+ + E++ELF QKL+QCC+LFDF+ D +SDLK KE+KRA LNE+VEY++
Sbjct: 99 ELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKFKEVKRAGLNEMVEYITH 158
Query: 585 NRGVIVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFL 755
+R V+ E+ Y + V M S N+FRTL A+WPH+QLVYEFFL
Sbjct: 159 SRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 218
Query: 756 RFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRK 935
RFLESPDFQP+IAK+YIDQKFV LL+LFDSEDPRERDFLKT+LHRIYGKFLGLRA+IR+
Sbjct: 219 RFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRR 278
Query: 936 QINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLAL 1115
QIN+IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL++VL+P+H K L++
Sbjct: 279 QINHIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSV 338
Query: 1116 FHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKK 1295
+H QLAYCVVQFLEK+++LTEPVI GLLKFWPKT S KEVMFL E+EEILDVIEP++F K
Sbjct: 339 YHPQLAYCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSK 398
Query: 1296 IEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHW 1475
+ EPLF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N ++LPIMF +LY+ SK HW
Sbjct: 399 VMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHW 458
Query: 1476 NPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
N TI L+YN LK MEMN KLFDD T Y
Sbjct: 459 NKTIHGLIYNALKLFMEMNQKLFDDCTQQY 488
>ref|NP_848702.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform c [Homo sapiens].
Length = 449
Score = 539 bits (1388), Expect = e-153
Identities = 266/386 (68%), Positives = 311/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y ++V M + N+FRTL A+WPH+QLVYEFFLRFLE
Sbjct: 87 ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|NP_848701.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform b [Homo sapiens].
Length = 485
Score = 539 bits (1388), Expect = e-153
Identities = 266/386 (68%), Positives = 311/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y ++V M + N+FRTL A+WPH+QLVYEFFLRFLE
Sbjct: 87 ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|NP_002710.2| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform a [Homo sapiens].
Length = 524
Score = 539 bits (1388), Expect = e-153
Identities = 266/386 (68%), Positives = 311/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y ++V M + N+FRTL A+WPH+QLVYEFFLRFLE
Sbjct: 87 ITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|NP_001155197.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform e [Homo sapiens].
Length = 555
Score = 538 bits (1386), Expect = e-153
Identities = 266/384 (69%), Positives = 310/384 (80%), Gaps = 4/384 (1%)
Frame = +3
Query: 426 QLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGVIV 602
Q +D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR VI
Sbjct: 60 QGRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVIT 119
Query: 603 ESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLESP 773
E Y ++V M + N+FRTL A+WPH+QLVYEFFLRFLESP
Sbjct: 120 EPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 179
Query: 774 DFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIF 953
DFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINNIF
Sbjct: 180 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 239
Query: 954 LRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLA 1133
RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H QLA
Sbjct: 240 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 299
Query: 1134 YCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLF 1313
YCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EPLF
Sbjct: 300 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 359
Query: 1314 KQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTIVA 1493
+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 360 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 419
Query: 1494 LVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 420 LIYNALKLFMEMNQKLFDDCTQQF 443
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,119,125
Number of extensions: 1507410
Number of successful extensions: 4088
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4063
Number of HSP's successfully gapped: 12
Length of query: 797
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 686
Effective length of database: 14,638,160
Effective search space: 10041777760
Effective search space used: 10041777760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002863
(2392 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659129.2| serine/threonine-protein phosphatase 2A 56 kDa ... 743 0.0
Alignment gi|NP_036154.1| serine/threonine-protein phosphatase 2A 56 kDa ... 620 e-177
Alignment gi|NP_937811.1| serine/threonine-protein phosphatase 2A 56 kDa ... 595 e-170
Alignment gi|NP_001128473.1| serine/threonine-protein phosphatase 2A 56 k... 546 e-155
Alignment gi|NP_033384.2| delta isoform of regulatory subunit B56, protei... 544 e-154
Alignment gi|NP_001074927.1| serine/threonine-protein phosphatase 2A 56 k... 537 e-152
Alignment gi|NP_001074926.1| serine/threonine-protein phosphatase 2A 56 k... 537 e-152
Alignment gi|NP_036153.2| serine/threonine-protein phosphatase 2A 56 kDa ... 537 e-152
>ref|NP_659129.2| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
alpha isoform [Mus musculus].
Length = 486
Score = 743 bits (1919), Expect = 0.0
Identities = 387/466 (83%), Positives = 390/466 (83%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
EKVDGFTRKSV ELHPLPQLKDATSNEQQELFCQKLQQC
Sbjct: 19 EKVDGFTRKSVRKAQRQKRSQGSSQFRSQGSQAELHPLPQLKDATSNEQQELFCQKLQQC 78
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C+LFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTL
Sbjct: 79 CVLFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLPPS 138
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS
Sbjct: 139 DNPDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 198
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN
Sbjct: 199 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 258
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW
Sbjct: 259 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 318
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE
Sbjct: 319 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 378
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYX 1568
YILSLIEENIDKILPIMF SLYKISKEHWN TIVALVYNVLKTLMEMNGKLFDDLTSSY
Sbjct: 379 YILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYK 438
Query: 1569 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAYNMHSILSNTS 1706
N+AYNMHSI S+TS
Sbjct: 439 AERQREKKKELEREELWKKLEELQLKKALEKQNNAYNMHSIRSSTS 484
>ref|NP_036154.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
epsilon isoform [Mus musculus].
Length = 467
Score = 620 bits (1600), Expect = e-177
Identities = 305/419 (72%), Positives = 349/419 (83%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+RKSV EL PLP LKD ++EQ ELF +KLQQC
Sbjct: 12 DKVDGFSRKSVRKARQKRSQSSSQFRSQGKPI-ELTPLPLLKDVPTSEQPELFLKKLQQC 70
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
C++FDFMD++SDLK KE KR+TLNELV+Y++ +RG + E Y ++V+M+S NIFRTL
Sbjct: 71 CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPS 130
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPH+QLVYEFF+RFLES +FQPSIAK+YIDQKFV QLLELFDS
Sbjct: 131 DSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 190
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERD+LKTVLHRIYGKFLGLRAFIRKQINNIFLRF+YETEHFNGVAELLEILGSIIN
Sbjct: 191 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIIN 250
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFL+KVLIP+HT + L+LFHAQLAYC+VQFLEKD +LTEPVIRGL+KFW
Sbjct: 251 GFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFW 310
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGE+EEILDVIEP+QF KI+EPLFKQI+KCVSS HFQVAERALY+WNNE
Sbjct: 311 PKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNE 370
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YI+SLIEEN + ILPIMF SLY+ISKEHWNP IVALVYNVLK MEMN +FD+LT++Y
Sbjct: 371 YIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 429
>ref|NP_937811.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
beta isoform [Mus musculus].
Length = 497
Score = 595 bits (1533), Expect = e-170
Identities = 291/419 (69%), Positives = 340/419 (81%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+R+S+ EL PLP LKD ++E EL +KL QC
Sbjct: 26 DKVDGFSRRSLRRARPRRSHSSSQFRYQSNQQ-ELTPLPLLKDVPASELHELLSRKLAQC 84
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
++FDF+D V+DLK KE+KRA LNELVE V RGV++E Y DI++MIS NIFRTL
Sbjct: 85 GVMFDFLDCVADLKGKEVKRAALNELVECVGCTRGVLIEPVYPDIIRMISVNIFRTLPPS 144
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
SWPH+QLVYEFFLRFLESPDFQPS+AKRY+DQKFV LLELFDS
Sbjct: 145 ENPEFDPEEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 204
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRER++LKT+LHR+YGKFLGLRA+IRKQ N+IFLRFIYE EHFNGVAELLEILGSIIN
Sbjct: 205 EDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLRFIYELEHFNGVAELLEILGSIIN 264
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLK EHKQFL++VLIP+H+ K L++FHAQLAYCVVQFLEKD TLTE VIRGLLK+W
Sbjct: 265 GFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKDATLTEHVIRGLLKYW 324
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTC+QKEVMFLGE+EEILDVIEP+QF KI+EPLFKQ+++CVSS HFQVAERALYFWNNE
Sbjct: 325 PKTCTQKEVMFLGEMEEILDVIEPSQFVKIQEPLFKQVARCVSSPHFQVAERALYFWNNE 384
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YILSLIE+N +LP +FG+LY++SKEHWN TIV+L+YNVLKT MEMNGKLFD+LT+SY
Sbjct: 385 YILSLIEDNCHTVLPAVFGTLYQVSKEHWNQTIVSLIYNVLKTFMEMNGKLFDELTASY 443
>ref|NP_001128473.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform d [Mus musculus].
Length = 509
Score = 546 bits (1407), Expect = e-155
Identities = 271/390 (69%), Positives = 313/390 (80%), Gaps = 4/390 (1%)
Frame = +3
Query: 408 ELHPLPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVST 584
EL LP LKD +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++
Sbjct: 80 ELQKLPSLKDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITH 139
Query: 585 NRGVIVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFL 755
NR VI E Y + V M + N+FRTL A+WPH+QLVYEFFL
Sbjct: 140 NRNVITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 199
Query: 756 RFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRK 935
RFLESPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRK
Sbjct: 200 RFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 259
Query: 936 QINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLAL 1115
QINNIF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L++
Sbjct: 260 QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSV 319
Query: 1116 FHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKK 1295
+H QLAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F K
Sbjct: 320 YHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 379
Query: 1296 IEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHW 1475
I EPLF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HW
Sbjct: 380 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHW 439
Query: 1476 NPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
N TI L+YN LK MEMN KLFDD T +
Sbjct: 440 NKTIHGLIYNALKLFMEMNQKLFDDCTQQF 469
>ref|NP_033384.2| delta isoform of regulatory subunit B56, protein phosphatase 2A [Mus
musculus].
Length = 594
Score = 544 bits (1401), Expect = e-154
Identities = 266/390 (68%), Positives = 317/390 (81%), Gaps = 4/390 (1%)
Frame = +3
Query: 408 ELHPLPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVST 584
EL LP LKD+ + E++ELF QKL+QCC+LFDF+ D +SDLK KE+KRA LNE+VEY++
Sbjct: 91 ELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKCKEVKRAGLNEMVEYITH 150
Query: 585 NRGVIVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFL 755
+R V+ E+ Y + V M S N+FRTL A+WPH+QLVYEFFL
Sbjct: 151 SRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 210
Query: 756 RFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRK 935
RFLESPDFQP+IAK+YIDQKFV LL+LFDSEDPRERDFLKT+LHRIYGKFLGLRA+IR+
Sbjct: 211 RFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRR 270
Query: 936 QINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLAL 1115
QIN+IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL++VL+P+H K L++
Sbjct: 271 QINHIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKVFLVRVLLPLHKVKSLSV 330
Query: 1116 FHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKK 1295
+H QLAYCVVQFLEK+++LTEPVI GLLKFWPKT S KEVMFL E+EEILDVIEP++F K
Sbjct: 331 YHPQLAYCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSK 390
Query: 1296 IEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHW 1475
+ EPLF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N +ILPIMF +LY+ SK HW
Sbjct: 391 VMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAARILPIMFPALYRNSKSHW 450
Query: 1476 NPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
N TI L+YN LK MEMN KLFDD T Y
Sbjct: 451 NKTIHGLIYNALKLFMEMNQKLFDDCTQQY 480
>ref|NP_001074927.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform c [Mus musculus].
Length = 452
Score = 537 bits (1384), Expect = e-152
Identities = 266/386 (68%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y + V M + N+FRTL A+WPH+QLVYEFFLRFLE
Sbjct: 87 ITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|NP_001074926.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform b [Mus musculus].
Length = 485
Score = 537 bits (1384), Expect = e-152
Identities = 266/386 (68%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y + V M + N+FRTL A+WPH+QLVYEFFLRFLE
Sbjct: 87 ITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
>ref|NP_036153.2| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
gamma isoform isoform a [Mus musculus].
Length = 524
Score = 537 bits (1384), Expect = e-152
Identities = 266/386 (68%), Positives = 310/386 (80%), Gaps = 4/386 (1%)
Frame = +3
Query: 420 LPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVSTNRGV 596
L ++D +Q++LF QKL+QCC+LFDF+ D +SDLK KE+KRA L+E+VEY++ NR V
Sbjct: 27 LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNV 86
Query: 597 IVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFLRFLE 767
I E Y + V M + N+FRTL A+WPH+QLVYEFFLRFLE
Sbjct: 87 ITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 146
Query: 768 SPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN 947
SPDFQP+IAK+YIDQKFV QLLELFDSEDPRERDFLKT LHRIYGKFLGLRA+IRKQINN
Sbjct: 147 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206
Query: 948 IFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQ 1127
IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL+KVL+P+H K L+++H Q
Sbjct: 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQ 266
Query: 1128 LAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEP 1307
LAYCVVQFLEKD+TLTEPV+ LLK+WPKT S KEVMFL E+EEILDVIEP++F KI EP
Sbjct: 267 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEP 326
Query: 1308 LFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTI 1487
LF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI
Sbjct: 327 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 386
Query: 1488 VALVYNVLKTLMEMNGKLFDDLTSSY 1565
L+YN LK MEMN KLFDD T +
Sbjct: 387 HGLIYNALKLFMEMNQKLFDDCTQQF 412
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,435,386
Number of extensions: 1305916
Number of successful extensions: 3523
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3504
Number of HSP's successfully gapped: 8
Length of query: 797
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 688
Effective length of database: 12,343,635
Effective search space: 8492420880
Effective search space used: 8492420880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002863
(2392 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093662.1| serine/threonine-protein phosphatase 2A 56 k... 759 0.0
Alignment gi|XP_003122600.1| PREDICTED: serine/threonine-protein phosphat... 593 e-169
Alignment gi|NP_001106922.1| serine/threonine-protein phosphatase 2A 56 k... 544 e-154
Alignment gi|XP_003356857.1| PREDICTED: hypothetical protein LOC100517901... 106 5e-23
>ref|NP_001093662.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
alpha isoform [Sus scrofa].
Length = 487
Score = 759 bits (1960), Expect = 0.0
Identities = 395/468 (84%), Positives = 395/468 (84%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
EKVDGFTRKSV PELHPLPQLKDATSNEQQELFCQKLQQC
Sbjct: 20 EKVDGFTRKSVRKAQRQKRSQGSSQFRSQGSQPELHPLPQLKDATSNEQQELFCQKLQQC 79
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
CILFDFMDSVSDLKSKEIKRATLN LVEYVSTNRGVIVESAYSDIVKMISANIFRTL
Sbjct: 80 CILFDFMDSVSDLKSKEIKRATLNGLVEYVSTNRGVIVESAYSDIVKMISANIFRTLPPS 139
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
ASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS
Sbjct: 140 DNPDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 199
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN
Sbjct: 200 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 259
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW
Sbjct: 260 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 319
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE
Sbjct: 320 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 379
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYX 1568
YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY
Sbjct: 380 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYK 439
Query: 1569 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAYNMHSILSNTSDE 1712
NSAYNMHSILSNTSDE
Sbjct: 440 AERQREKKKELEREELWKKLEELKLKKALEKQNSAYNMHSILSNTSDE 487
>ref|XP_003122600.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory
subunit beta isoform [Sus scrofa].
Length = 497
Score = 593 bits (1530), Expect = e-169
Identities = 290/419 (69%), Positives = 341/419 (81%)
Frame = +3
Query: 309 EKVDGFTRKSVXXXXXXXXXXXXXXXXXXXXXPELHPLPQLKDATSNEQQELFCQKLQQC 488
+KVDGF+R+S+ EL PLP LKD ++E EL +KL QC
Sbjct: 26 DKVDGFSRRSLRRARPRRSHSSSQFRYQSNQQ-ELTPLPLLKDVPASELHELLSRKLAQC 84
Query: 489 CILFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLXXX 668
++FDF+D V+DLK KE+KRA LNELVE V + RGV++E Y DI++MIS NIFRTL
Sbjct: 85 GVMFDFLDCVADLKGKEVKRAALNELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPS 144
Query: 669 XXXXXXXXXXXXXXXASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDS 848
SWPH+QLVYEFFLRFLESPDFQPS+AKRY+DQKFV LLELFDS
Sbjct: 145 ENPEFDPEEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 204
Query: 849 EDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIIN 1028
EDPRER++LKT+LHR+YGKFLGLRA+IRKQ ++IFLRFIYE EHFNGVAELLEILGSIIN
Sbjct: 205 EDPREREYLKTILHRVYGKFLGLRAYIRKQCSHIFLRFIYELEHFNGVAELLEILGSIIN 264
Query: 1029 GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFW 1208
GFALPLK EHKQFL++VLIP+H+ K L++FHAQLAYCVVQFLEKD TLTE VIRGLLK+W
Sbjct: 265 GFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKDATLTEHVIRGLLKYW 324
Query: 1209 PKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNE 1388
PKTC+QKEVMFLGE+EEILDVIEP+QF KI+EPLFKQ+++CVSS HFQVAERALYFWNNE
Sbjct: 325 PKTCTQKEVMFLGEMEEILDVIEPSQFVKIQEPLFKQVARCVSSPHFQVAERALYFWNNE 384
Query: 1389 YILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
YILSLIE+N +LP +FG+LY++SKEHWN TIV+L+YNVLKT MEMNGKLFD+LT+SY
Sbjct: 385 YILSLIEDNCHTVLPAVFGTLYQVSKEHWNQTIVSLIYNVLKTFMEMNGKLFDELTASY 443
>ref|NP_001106922.1| serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
delta isoform [Sus scrofa].
Length = 602
Score = 544 bits (1401), Expect = e-154
Identities = 265/390 (67%), Positives = 317/390 (81%), Gaps = 4/390 (1%)
Frame = +3
Query: 408 ELHPLPQLKDATSNEQQELFCQKLQQCCILFDFM-DSVSDLKSKEIKRATLNELVEYVST 584
EL LP LKD+ + E++ELF QKL+QCC+LFDF+ D +SDLK KE+KRA LNE+VEY++
Sbjct: 99 ELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKFKEVKRAGLNEMVEYITH 158
Query: 585 NRGVIVESAYSDIVKMISANIFRTLXXXXXXXXXXXXXXXXXX---ASWPHIQLVYEFFL 755
+R V+ E+ Y + V M S N+FRTL A+WPH+QLVYEFFL
Sbjct: 159 SRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 218
Query: 756 RFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRK 935
RFLESPDFQP+IAK+YIDQKFV LL+LFDSEDPRERDFLKT+LHRIYGKFLGLRA+IR+
Sbjct: 219 RFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRR 278
Query: 936 QINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLAL 1115
QIN+IF RFIYETEH NG+AELLEILGSIINGFALPLK EHK FL++VL+P+H K L++
Sbjct: 279 QINHIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSV 338
Query: 1116 FHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKK 1295
+H QLAYCVVQFLEK+++LTEPVI GLLKFWPKT S KEVMFL E+EEILDVIEP++F K
Sbjct: 339 YHPQLAYCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSK 398
Query: 1296 IEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHW 1475
+ EPLF+Q++KCVSS HFQVAERALY+WNNEYI+SLI +N ++LPIMF +LY+ SK HW
Sbjct: 399 VMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHW 458
Query: 1476 NPTIVALVYNVLKTLMEMNGKLFDDLTSSY 1565
N TI L+YN LK MEMN KLFDD T Y
Sbjct: 459 NKTIHGLIYNALKLFMEMNQKLFDDCTQQY 488
>ref|XP_003356857.1| PREDICTED: hypothetical protein LOC100517901 [Sus scrofa].
Length = 367
Score = 106 bits (265), Expect = 5e-23
Identities = 50/72 (69%), Positives = 56/72 (77%)
Frame = +3
Query: 1350 QVAERALYFWNNEYILSLIEENIDKILPIMFGSLYKISKEHWNPTIVALVYNVLKTLMEM 1529
QVAERALY+WNNEYI+SLI +N KILPIMF SLY+ SK HWN TI L+YN LK MEM
Sbjct: 259 QVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 318
Query: 1530 NGKLFDDLTSSY 1565
N KLFDD T +
Sbjct: 319 NQKLFDDCTQQF 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,107,458
Number of extensions: 938909
Number of successful extensions: 2540
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2533
Number of HSP's successfully gapped: 4
Length of query: 797
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 690
Effective length of database: 8,679,953
Effective search space: 5989167570
Effective search space used: 5989167570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002863
(2392 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1350 0.0
Sscrofa_Chr01 68 2e-08
>Sscrofa_Chr09
|| Length = 153670197
Score = 1350 bits (681), Expect = 0.0
Identities = 775/812 (95%), Gaps = 4/812 (0%)
Strand = Plus / Minus
Query: 1581 agggagaaaaagaaggaattggaacgtgaagaattatggaaaaaattagaggagctaaag 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052763 agggagaaaaagaaggaattggaacgtgaagaattatggaaaaaattagaggagctaaag 144052704
Query: 1641 ctaaagaaagctctagaaaagcagaacagtgcttacaacatgcacagtatcctcagcaat 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052703 ctaaagaaagctctagaaaagcagaacagtgcttacaacatgcacagtatcctcagcaat 144052644
Query: 1701 acaagcgatgaatnnnnnnngcctgtcacctctgctggataggcggttttgtacactttt 1760
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052643 acaagcgatgaataaaaaaagcctgtcacctctgctggataggcggttttgtacactttt 144052584
Query: 1761 ttgaaatgtgtaaaaattatgaaacaaacctcatcagtataatataattaaaaagccaan 1820
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052583 ttgaaatgtgtaaaaattatgaaacaaacctcatcagtataatataattaaaaagccaat 144052524
Query: 1821 nnnnnnnnnnnnctggcaactgtaaatgnnnnnnnnnnntatatggactaaacatagccc 1880
|||||||||||||||| |||||||||||||||||||||
Sbjct: 144052523 tttttttttt--ctggcaactgtaaatgaaaaaaaaaa-tatatggactaaacatagccc 144052467
Query: 1881 tgggctatatcatagccacagtatattgtaacctttgtctaatcattgatttgtgtcact 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052466 tgggctatatcatagccacagtatattgtaacctttgtctaatcattgatttgtgtcact 144052407
Query: 1941 tctgcagtttcacagaaatgaatgaactttatcatctacgatatgagtgaactaattatg 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052406 tctgcagtttcacagaaatgaatgaactttatcatctacgatatgagtgaactaattatg 144052347
Query: 2001 ggcgtggtgagaatcatgacttgaattctgtttggggttgtgttgcacatagagtagtct 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052346 ggcgtggtgagaatcatgacttgaattctgtttggggttgtgttgcacatagagtagtct 144052287
Query: 2061 gctctgtatatttttcccttttctaatgtgcttttcacgtcgctgcagaccttagttaca 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052286 gctctgtatatttttcccttttctaatgtgcttttcacgtcgctgcagaccttagttaca 144052227
Query: 2121 tcctaggaaaaagatgtcctcaaacaaaaccgaggcgtagctctgacaaccttccctcca 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052226 tcctaggaaaaagatgtcctcaaacaaaaccgaggcgtagctctgacaaccttccctcca 144052167
Query: 2181 tcgcgccccagacacaggagggaggcagtgacctgccctaagcctgcctttgttagagag 2240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052166 tcgcg-cccagacacaggagggaggcagtgacctgccctaagcctgcctttgttagagag 144052108
Query: 2241 attactgtactctggaattggagcaaaaccttcaatttccaggctctttaaagcacaaat 2300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144052107 attactgtactctggaattggagcaaaaccttcaatttccaggctctttaaagcacaaat 144052048
Query: 2301 tatgaagaaaagccgggaaagtaaaccagactcctcccccggctcctcgtgaacatcccc 2360
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 144052047 tatgaagaaaagctgggaaagtaaaccagactcctccgccggctcctcgtgaacatcccc 144051988
Query: 2361 cttccccggcccttcccggagtgacaagcaca 2392
|||||||||| | |||||||||||| ||||||
Sbjct: 144051987 cttccccggcacctcccggagtgacgagcaca 144051956
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 171 cctctcccccgcctcctcctcctgccgctgcccgttccgtgcaagcagcagccggagctg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144123515 cctctcccccgcctcctcctcctgccgctgcccgttccgtgcaagcagcagccggagctg 144123456
Query: 231 ccaagcgccagggccgcggagatgtcgtcgtcgtcgccgccgccggcggcggctgccagc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144123455 ccaagcgccagggccgcggagatgtcgtcgtcgtcgccgccgccggcggcggctgccagc 144123396
Query: 291 gccgccatctcggcctcggagaaagtggacggcttcacccggaaatcggtgcgcaaggcg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144123395 gccgccatctcggcctcggagaaagtggacggcttcacccggaaatcggtgcgcaaggcg 144123336
Query: 351 cagaggcagaagcgctctcagggctcgtcgcagttccgcagccagggcagccagccggag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144123335 cagaggcagaagcgctctcagggctcgtcgcagttccgcagccagggcagccagccggag 144123276
Query: 411 ctgcaccccttgccccagctcaaag 435
|||||||||||||||||||||||||
Sbjct: 144123275 ctgcaccccttgccccagctcaaag 144123251
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 434 agatgccacttcaaatgaacaacaagaacttttctgtcagaagttgcagcagtgttgcat 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144093906 agatgccacttcaaatgaacaacaagaacttttctgtcagaagttgcagcagtgttgcat 144093847
Query: 494 actgtttgatttcatggactctgtttcagacttgaagagcaaagaaattaaaagagcaac 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144093846 actgtttgatttcatggactctgtttcagacttgaagagcaaagaaattaaaagagcaac 144093787
Query: 554 attgaatgaactggttgagtatgtttcaactaatcgtggtgtaattgttgaatcagcgta 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144093786 attgaatgaactggttgagtatgtttcaactaatcgtggtgtaattgttgaatcagcgta 144093727
Query: 614 ttctgatatagtaaaaatg 632
|||||||||||||||||||
Sbjct: 144093726 ttctgatatagtaaaaatg 144093708
Score = 270 bits (136), Expect = 3e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 1346 ttttcaggttgcagaaagggcattgtacttctggaataatgaatatattcttagtttgat 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144055064 ttttcaggttgcagaaagggcattgtacttctggaataatgaatatattcttagtttgat 144055005
Query: 1406 tgaggagaacattgataaaattctgccaattatgtttggcagtttgtataaaatctccaa 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144055004 tgaggagaacattgataaaattctgccaattatgtttggcagtttgtataaaatctccaa 144054945
Query: 1466 agaacactggaatccg 1481
||||||||||||||||
Sbjct: 144054944 agaacactggaatccg 144054929
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 826 agctcctggagctttttgatagtgaagatcccagagaacgtgacttcctgaagacggttc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144065344 agctcctggagctttttgatagtgaagatcccagagaacgtgacttcctgaagacggttc 144065285
Query: 886 tgcatcgaatttatgggaaatttcttggattaagagcattcatcagaaaacaaattaaca 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144065284 tgcatcgaatttatgggaaatttcttggattaagagcattcatcagaaaacaaattaaca 144065225
Query: 946 acatttttctcaggt 960
|||||||||||||||
Sbjct: 144065224 acatttttctcaggt 144065210
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1017 agtattatcaatggctttgcattgccactgaaagcagaacataaacaatttctaatgaag 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144063139 agtattatcaatggctttgcattgccactgaaagcagaacataaacaatttctaatgaag 144063080
Query: 1077 gttcttattcctatgcatactgcgaaaggattagctttgtttcatgctcag 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144063079 gttcttattcctatgcatactgcgaaaggattagctttgtttcatgctcag 144063029
Score = 204 bits (103), Expect = 2e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1481 gaccattgtggcgctggtgtacaacgtgctgaaaaccctcatggagatgaacggcaagct 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144053930 gaccattgtggcgctggtgtacaacgtgctgaaaaccctcatggagatgaacggcaagct 144053871
Query: 1541 tttcgatgaccttacgagctcatacaaggctgaaagacaaagg 1583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144053870 tttcgatgaccttacgagctcatacaaggctgaaagacaaagg 144053828
Score = 204 bits (103), Expect = 2e-49
Identities = 117/124 (94%)
Strand = Plus / Minus
Query: 1231 aggtgatgtttttaggagaaattgaagaaatcttagatgtcattgaaccaacacaattcn 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144055258 aggtgatgtttttaggagaaattgaagaaatcttagatgtcattgaaccaacacaattca 144055199
Query: 1291 nnnnnnttgaagagcccctttttaagcagatatccaagtgtgtatccagttctcattttc 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144055198 aaaaaattgaagagcccctttttaagcagatatccaagtgtgtatccagttctcattttc 144055139
Query: 1351 aggt 1354
||||
Sbjct: 144055138 aggt 144055135
Score = 204 bits (103), Expect = 2e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 632 gatcagtgctaacatcttccgaactcttcctccaagtgataatccagattttgatccaga 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144090536 gatcagtgctaacatcttccgaactcttcctccaagtgataatccagattttgatccaga 144090477
Query: 692 agaggatgagcccacactcgaggcctcttggcctcacatacaa 734
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144090476 agaggatgagcccacactcgaggcctcttggcctcacatacaa 144090434
Score = 184 bits (93), Expect = 2e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 735 ttggtgtatgaattcttcttaagatttttggagagccctgatttccagcctagcattgcc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144068983 ttggtgtatgaattcttcttaagatttttggagagccctgatttccagcctagcattgcc 144068924
Query: 795 aagcgatacattgatcagaaatttgtacaacag 827
|||||||||||||||||||||||||||||||||
Sbjct: 144068923 aagcgatacattgatcagaaatttgtacaacag 144068891
Score = 135 bits (68), Expect = 1e-28
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 1 ccgccctccgtcagccccgggagctcgccgcgcggcgggaaccaggactcgccggccctg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 144123685 ccgccctccgtcagccccgggagctcgccgcgcggcggggaccaggactcgccggccctg 144123626
Query: 61 agatgtggccgt 72
||||||||||||
Sbjct: 144123625 agatgtggccgt 144123614
Score = 129 bits (65), Expect = 8e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 954 ctcaggtttatatatgaaacagagcatttcaatggtgttgctgagctccttgaaatatta 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144064066 ctcaggtttatatatgaaacagagcatttcaatggtgttgctgagctccttgaaatatta 144064007
Query: 1014 ggaag 1018
|||||
Sbjct: 144064006 ggaag 144064002
Score = 115 bits (58), Expect = 1e-22
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1126 agctagcctactgtgttgtacagttcctggagaaagatacaacactaacagaaccagt 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144062226 agctagcctactgtgttgtacagttcctggagaaagatacaacactaacagaaccagt 144062169
Score = 107 bits (54), Expect = 3e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1182 gtgatcagaggattgctgaaattttggccaaaaacatgcagtcagaaagaggtg 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144055578 gtgatcagaggattgctgaaattttggccaaaaacatgcagtcagaaagaggtg 144055525
>Sscrofa_Chr01
|| Length = 315321322
Score = 67.9 bits (34), Expect = 2e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 957 aggtttatatatgaaacagagcatttcaatggtgttgctgagctccttgaaatattagga 1016
|||||| | ||||||||||| |||||||||||||||||||| || || |||||| |||||
Sbjct: 216610880 aggtttgtttatgaaacagaacatttcaatggtgttgctgaactgctggaaatactagga 216610821
Query: 1017 ag 1018
||
Sbjct: 216610820 ag 216610819
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 75,091,116
Number of extensions: 636
Number of successful extensions: 636
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 16
Length of query: 2392
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2370
Effective length of database: 2,808,408,574
Effective search space: 6655928320380
Effective search space used: 6655928320380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)