Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002868
(913 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776410.1| allograft inflammatory factor 1 [Bos taurus]. 257 1e-68
Alignment gi|NP_001071547.1| allograft inflammatory factor 1-like [Bos ta... 192 3e-49
Alignment gi|NP_001096715.1| EF-hand domain-containing protein D2 [Bos ta... 58 1e-08
Alignment gi|NP_001069300.1| EF-hand domain-containing protein D1 [Bos ta... 56 4e-08
>ref|NP_776410.1| allograft inflammatory factor 1 [Bos taurus].
Length = 147
Score = 257 bits (656), Expect = 1e-68
Identities = 131/145 (90%), Positives = 137/145 (94%)
Frame = +1
Query: 220 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 399
+T DLQGGKAFGL KAQQEER+NEIN+QFLDDPKYSSDEDL SKLEAFK+KYMEFDLN +
Sbjct: 3 ETRDLQGGKAFGLRKAQQEERINEINQQFLDDPKYSSDEDLPSKLEAFKKKYMEFDLNED 62
Query: 400 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 579
G IDIMSLKRM+EKLGVPKTHLELKKLI EVSSG GETFSYSDFLKMMLGKRSAILKMIL
Sbjct: 63 GGIDIMSLKRMMEKLGVPKTHLELKKLIMEVSSGPGETFSYSDFLKMMLGKRSAILKMIL 122
Query: 580 MYEEKAREQEKPTGPPAKKAISELP 654
MYEEKAREQEKPTG PAKKAISELP
Sbjct: 123 MYEEKAREQEKPTGLPAKKAISELP 147
>ref|NP_001071547.1| allograft inflammatory factor 1-like [Bos taurus].
Length = 150
Score = 192 bits (488), Expect = 3e-49
Identities = 93/141 (65%), Positives = 115/141 (81%), Gaps = 1/141 (0%)
Frame = +1
Query: 235 QGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDI 414
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+
Sbjct: 10 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDL 69
Query: 415 MSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEK 594
MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 70 MSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 129
Query: 595 ARE-QEKPTGPPAKKAISELP 654
A E KP GPP ++ I+ LP
Sbjct: 130 ANEGSSKPVGPPPERDIASLP 150
>ref|NP_001096715.1| EF-hand domain-containing protein D2 [Bos taurus].
Length = 242
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 322 YSSDEDLSSK-LEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSS 498
Y+ ++ S K ++ ++ + E+D +G ID+M LK M+EKLG P+THL LK +IKEV
Sbjct: 85 YTEFKEFSRKQIKDMEKMFKEYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDE 144
Query: 499 GSGETFSYSDFL 534
S+ +FL
Sbjct: 145 DFDSKLSFREFL 156
>ref|NP_001069300.1| EF-hand domain-containing protein D1 [Bos taurus].
Length = 236
Score = 56.2 bits (134), Expect = 4e-08
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 5/186 (2%)
Frame = +1
Query: 109 WEEG---LQAAAGRGEPADREVA--AWXXXXXXXXXXXXXXXQTLDLQGGKAFGLLKAQQ 273
WEEG LQ A G + + AW + LD+ G A
Sbjct: 16 WEEGDSGLQPAPGAAPDPEPQPQPPAWAPTARADAELSAQLNRRLDINEGAA-------- 67
Query: 274 EERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVP 453
R ++ + + P++S L LE+ + Y D +G ID+M LK M+EKLG P
Sbjct: 68 RPRRCKVFHPYSEFPEFS--RRLIKDLESMFKLY---DAGRDGFIDLMELKLMMEKLGAP 122
Query: 454 KTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEKAREQEKPTGPPAK 633
+THL LK +IKEV S+ +FL ++ ++ A E ++ +G A
Sbjct: 123 QTHLGLKSMIKEVDEDFDGKLSFREFL-------------LIFHKAAAGELQEDSGLMAL 169
Query: 634 KAISEL 651
+SE+
Sbjct: 170 AKLSEI 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,634,533
Number of extensions: 829972
Number of successful extensions: 2843
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2842
Number of HSP's successfully gapped: 4
Length of query: 304
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,306,398
Effective search space: 2889892396
Effective search space used: 2889892396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002868
(913 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532072.2| PREDICTED: similar to allograft inflammatory fa... 263 2e-70
Alignment gi|XP_849334.1| PREDICTED: similar to allograft inflammatory fa... 263 2e-70
Alignment gi|XP_850690.1| PREDICTED: similar to ionized calcium binding a... 157 1e-38
Alignment gi|XP_543290.2| PREDICTED: similar to EF hand domain containing... 54 2e-07
Alignment gi|XP_848956.1| PREDICTED: similar to EF hand domain containing... 54 2e-07
>ref|XP_532072.2| PREDICTED: similar to allograft inflammatory factor 1 isoform 3
isoform 1 [Canis familiaris].
Length = 147
Score = 263 bits (671), Expect = 2e-70
Identities = 132/145 (91%), Positives = 140/145 (96%)
Frame = +1
Query: 220 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 399
QT DLQGGKAFGLLKAQQE+RL+EINKQFLDDPKYSSDEDL SKLEAFK+KYMEFDLNG+
Sbjct: 3 QTRDLQGGKAFGLLKAQQEDRLDEINKQFLDDPKYSSDEDLPSKLEAFKKKYMEFDLNGD 62
Query: 400 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 579
GDIDIM+LKRMLEKLGVPKTHLELKKLI+EVSS SGETFSYSDFLKMMLGK+SAILK+IL
Sbjct: 63 GDIDIMALKRMLEKLGVPKTHLELKKLIREVSSSSGETFSYSDFLKMMLGKKSAILKIIL 122
Query: 580 MYEEKAREQEKPTGPPAKKAISELP 654
MYEEKAREQEKP GPPAKK ISELP
Sbjct: 123 MYEEKAREQEKPAGPPAKKDISELP 147
>ref|XP_849334.1| PREDICTED: similar to allograft inflammatory factor 1 isoform 3
isoform 2 [Canis familiaris].
Length = 147
Score = 263 bits (671), Expect = 2e-70
Identities = 132/145 (91%), Positives = 140/145 (96%)
Frame = +1
Query: 220 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 399
QT DLQGGKAFGLLKAQQE+RL+EINKQFLDDPKYSSDEDL SKLEAFK+KYMEFDLNG+
Sbjct: 3 QTRDLQGGKAFGLLKAQQEDRLDEINKQFLDDPKYSSDEDLPSKLEAFKKKYMEFDLNGD 62
Query: 400 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 579
GDIDIM+LKRMLEKLGVPKTHLELKKLI+EVSS SGETFSYSDFLKMMLGK+SAILK+IL
Sbjct: 63 GDIDIMALKRMLEKLGVPKTHLELKKLIREVSSSSGETFSYSDFLKMMLGKKSAILKIIL 122
Query: 580 MYEEKAREQEKPTGPPAKKAISELP 654
MYEEKAREQEKP GPPAKK ISELP
Sbjct: 123 MYEEKAREQEKPAGPPAKKDISELP 147
>ref|XP_850690.1| PREDICTED: similar to ionized calcium binding adapter molecule 2
[Canis familiaris].
Length = 246
Score = 157 bits (398), Expect = 1e-38
Identities = 75/119 (63%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Frame = +1
Query: 301 QFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKL 480
+FL D KYS +E+L KL AFK+KYMEFDLN G+ID+MSLKRM+EKLGVPKTHLE+KK+
Sbjct: 128 EFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKM 187
Query: 481 IKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEKAREQE-KPTGPPAKKAISELP 654
I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E KA E KP GPP ++ I+ LP
Sbjct: 188 ISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIASLP 246
>ref|XP_543290.2| PREDICTED: similar to EF hand domain containing 1 [Canis
familiaris].
Length = 141
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/90 (35%), Positives = 48/90 (53%)
Frame = +1
Query: 382 FDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSA 561
+D +G ID+M LK M+EKLG P+THL LK +IKEV S+ +FL
Sbjct: 4 YDSGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDGRLSFREFL--------- 54
Query: 562 ILKMILMYEEKAREQEKPTGPPAKKAISEL 651
++ ++ A E E+ +G A +SE+
Sbjct: 55 ----LIFHKAAAGELEEDSGLMALAKLSEI 80
>ref|XP_848956.1| PREDICTED: similar to EF hand domain containing 2 [Canis
familiaris].
Length = 248
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +1
Query: 376 MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFL 534
+++D +G ID+M LK M+EKLG P+THL LK +IKEV S+ +FL
Sbjct: 110 LKYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFREFL 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,257,380
Number of extensions: 848797
Number of successful extensions: 2837
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2835
Number of HSP's successfully gapped: 5
Length of query: 304
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 202
Effective length of database: 15,474,232
Effective search space: 3125794864
Effective search space used: 3125794864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002868
(913 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001614.3| allograft inflammatory factor 1 isoform 3 [Homo... 269 3e-72
Alignment gi|NP_113614.1| allograft inflammatory factor 1-like isoform 1 ... 192 4e-49
Alignment gi|NP_001172024.1| allograft inflammatory factor 1-like isoform... 178 7e-45
Alignment gi|NP_116573.1| allograft inflammatory factor 1 isoform 1 [Homo... 176 2e-44
Alignment gi|NP_001172025.1| allograft inflammatory factor 1-like isoform... 137 1e-32
Alignment gi|NP_004838.1| allograft inflammatory factor 1 isoform 2 [Homo... 102 6e-22
Alignment gi|NP_077305.2| EF-hand domain-containing protein D2 [Homo sapi... 57 2e-08
Alignment gi|NP_001230181.1| EF-hand domain-containing protein D1 isoform... 55 9e-08
Alignment gi|NP_079478.1| EF-hand domain-containing protein D1 isoform 1 ... 54 2e-07
>ref|NP_001614.3| allograft inflammatory factor 1 isoform 3 [Homo sapiens].
Length = 147
Score = 269 bits (687), Expect = 3e-72
Identities = 136/145 (93%), Positives = 140/145 (96%)
Frame = +1
Query: 220 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 399
QT DLQGGKAFGLLKAQQEERL+EINKQFLDDPKYSSDEDL SKLE FK+KYMEFDLNGN
Sbjct: 3 QTRDLQGGKAFGLLKAQQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGN 62
Query: 400 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 579
GDIDIMSLKRMLEKLGVPKTHLELKKLI EVSSGSGETFSY DFL+MMLGKRSAILKMIL
Sbjct: 63 GDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKMIL 122
Query: 580 MYEEKAREQEKPTGPPAKKAISELP 654
MYEEKARE+EKPTGPPAKKAISELP
Sbjct: 123 MYEEKAREKEKPTGPPAKKAISELP 147
>ref|NP_113614.1| allograft inflammatory factor 1-like isoform 1 [Homo sapiens].
Length = 150
Score = 192 bits (488), Expect = 4e-49
Identities = 93/141 (65%), Positives = 115/141 (81%), Gaps = 1/141 (0%)
Frame = +1
Query: 235 QGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDI 414
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+
Sbjct: 10 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDL 69
Query: 415 MSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEK 594
MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 70 MSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 129
Query: 595 AREQE-KPTGPPAKKAISELP 654
A E KP GPP ++ I+ LP
Sbjct: 130 ANESSPKPVGPPPERDIASLP 150
>ref|NP_001172024.1| allograft inflammatory factor 1-like isoform 3 [Homo sapiens].
Length = 176
Score = 178 bits (451), Expect = 7e-45
Identities = 93/167 (55%), Positives = 115/167 (68%), Gaps = 27/167 (16%)
Frame = +1
Query: 235 QGGKAFGLLKAQQEERLNEINK--------------------------QFLDDPKYSSDE 336
QGGKAFGLLKA+QE RL EIN+ +FL D KYS +E
Sbjct: 10 QGGKAFGLLKARQERRLAEINRYCAGREPQLQRISCSQHSCLLALLFQEFLCDQKYSDEE 69
Query: 337 DLSSKLEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETF 516
+L KL AFK+KYMEFDLN G+ID+MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T
Sbjct: 70 NLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTI 129
Query: 517 SYSDFLKMMLGKRSAILKMILMYEEKAREQE-KPTGPPAKKAISELP 654
SY DF+ MMLGKRSA+LK+++M+E KA E KP GPP ++ I+ LP
Sbjct: 130 SYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIASLP 176
>ref|NP_116573.1| allograft inflammatory factor 1 isoform 1 [Homo sapiens].
Length = 93
Score = 176 bits (447), Expect = 2e-44
Identities = 89/93 (95%), Positives = 91/93 (97%)
Frame = +1
Query: 376 MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKR 555
MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLI EVSSGSGETFSY DFL+MMLGKR
Sbjct: 1 MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKR 60
Query: 556 SAILKMILMYEEKAREQEKPTGPPAKKAISELP 654
SAILKMILMYEEKARE+EKPTGPPAKKAISELP
Sbjct: 61 SAILKMILMYEEKAREKEKPTGPPAKKAISELP 93
>ref|NP_001172025.1| allograft inflammatory factor 1-like isoform 4 [Homo sapiens].
Length = 102
Score = 137 bits (346), Expect = 1e-32
Identities = 66/90 (73%), Positives = 78/90 (86%)
Frame = +1
Query: 235 QGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDI 414
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+
Sbjct: 10 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDL 69
Query: 415 MSLKRMLEKLGVPKTHLELKKLIKEVSSGS 504
MSLKRM+EKLGVPKTHLE+KK+I EV+ GS
Sbjct: 70 MSLKRMMEKLGVPKTHLEMKKMISEVTGGS 99
>ref|NP_004838.1| allograft inflammatory factor 1 isoform 2 [Homo sapiens].
Length = 132
Score = 102 bits (253), Expect = 6e-22
Identities = 52/55 (94%), Positives = 53/55 (96%)
Frame = +1
Query: 409 DIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKM 573
DIMSLKRMLEKLGVPKTHLELKKLI EVSSGSGETFSY DFL+MMLGKRSAILKM
Sbjct: 78 DIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKM 132
>ref|NP_077305.2| EF-hand domain-containing protein D2 [Homo sapiens].
Length = 240
Score = 57.0 bits (136), Expect = 2e-08
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 322 YSSDEDLSSK-LEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSS 498
Y+ ++ S K ++ ++ + ++D +G ID+M LK M+EKLG P+THL LK +IKEV
Sbjct: 83 YTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDE 142
Query: 499 GSGETFSYSDFL 534
S+ +FL
Sbjct: 143 DFDSKLSFREFL 154
>ref|NP_001230181.1| EF-hand domain-containing protein D1 isoform 2 [Homo sapiens].
Length = 143
Score = 55.1 bits (131), Expect = 9e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Frame = +1
Query: 376 MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKR 555
+++D +G ID+M LK M+EKLG P+THL LK +IKEV S+ +FL
Sbjct: 4 LQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFL------- 56
Query: 556 SAILKMILMYEEKAREQEKPTGPPAKKAISEL 651
++ ++ A E ++ +G A +SE+
Sbjct: 57 ------LIFHKAAAGELQEDSGLMALAKLSEI 82
>ref|NP_079478.1| EF-hand domain-containing protein D1 isoform 1 [Homo sapiens].
Length = 239
Score = 53.9 bits (128), Expect = 2e-07
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 322 YSSDEDLSSKL-EAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSS 498
Y+ + S +L + + + +D +G ID+M LK M+EKLG P+THL LK +IKEV
Sbjct: 81 YTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDE 140
Query: 499 GSGETFSYSDFLKMMLGKRSAILKMILMYEEKAREQEKPTGPPAKKAISEL 651
S+ +FL ++ ++ A E ++ +G A +SE+
Sbjct: 141 DFDGKLSFREFL-------------LIFHKAAAGELQEDSGLMALAKLSEI 178
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,402,729
Number of extensions: 828401
Number of successful extensions: 3014
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3010
Number of HSP's successfully gapped: 9
Length of query: 304
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,934,836
Effective search space: 3016836872
Effective search space used: 3016836872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002868
(913 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062340.1| allograft inflammatory factor 1 [Mus musculus]. 254 5e-68
Alignment gi|NP_660126.1| allograft inflammatory factor 1-like [Mus muscu... 193 1e-49
Alignment gi|NP_080270.2| EF-hand domain-containing protein D2 [Mus muscu... 55 6e-08
Alignment gi|NP_083165.1| EF-hand domain-containing protein D1 [Mus muscu... 54 1e-07
>ref|NP_062340.1| allograft inflammatory factor 1 [Mus musculus].
Length = 147
Score = 254 bits (650), Expect = 5e-68
Identities = 128/145 (88%), Positives = 137/145 (94%)
Frame = +1
Query: 220 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 399
Q+ DLQGGKAFGLLKAQQEERL INKQFLDDPKYS+DEDL SKLEAFK KYMEFDLNGN
Sbjct: 3 QSRDLQGGKAFGLLKAQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGN 62
Query: 400 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 579
GDIDIMSLKRMLEKLGVPKTHLELK+LI+EVSSGS ETFSYSDFL+MMLGKRSAIL+MIL
Sbjct: 63 GDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGKRSAILRMIL 122
Query: 580 MYEEKAREQEKPTGPPAKKAISELP 654
MYEEK +E ++PTGPPAKKAISELP
Sbjct: 123 MYEEKNKEHKRPTGPPAKKAISELP 147
>ref|NP_660126.1| allograft inflammatory factor 1-like [Mus musculus].
Length = 150
Score = 193 bits (491), Expect = 1e-49
Identities = 93/141 (65%), Positives = 116/141 (82%), Gaps = 1/141 (0%)
Frame = +1
Query: 235 QGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDI 414
QGGKAFGLLKA+QE+RL EIN++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+
Sbjct: 10 QGGKAFGLLKARQEKRLEEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 69
Query: 415 MSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEK 594
MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 70 MSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 129
Query: 595 AREQE-KPTGPPAKKAISELP 654
A E KP GPP ++ I+ LP
Sbjct: 130 ANESSPKPAGPPPERDIASLP 150
>ref|NP_080270.2| EF-hand domain-containing protein D2 [Mus musculus].
Length = 240
Score = 55.5 bits (132), Expect = 6e-08
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 322 YSSDEDLSSK-LEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSS 498
Y+ ++ S K ++ ++ + ++D +G ID+M LK M+EKLG P+THL LK +I+EV
Sbjct: 83 YTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIQEVDE 142
Query: 499 GSGETFSYSDFL 534
S+ +FL
Sbjct: 143 DFDSKLSFREFL 154
>ref|NP_083165.1| EF-hand domain-containing protein D1 [Mus musculus].
Length = 240
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = +1
Query: 352 LEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDF 531
L+ ++ + +D +G ID+M LK M+EKLG P+THL LK +IKEV S+ +F
Sbjct: 93 LKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREF 152
Query: 532 L 534
L
Sbjct: 153 L 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,145,041
Number of extensions: 690197
Number of successful extensions: 2308
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2307
Number of HSP's successfully gapped: 4
Length of query: 304
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 203
Effective length of database: 12,583,923
Effective search space: 2554536369
Effective search space used: 2554536369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002868
(913 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123422.1| allograft inflammatory factor 1 [Sus scrofa]. 285 2e-77
Alignment gi|XP_003353736.1| PREDICTED: allograft inflammatory factor 1-l... 193 1e-49
Alignment gi|XP_003353737.1| PREDICTED: allograft inflammatory factor 1-l... 159 2e-39
Alignment gi|XP_003356207.1| PREDICTED: EF-hand domain-containing protein... 57 1e-08
Alignment gi|XP_003127676.1| PREDICTED: EF-hand domain-containing protein... 57 1e-08
Alignment gi|XP_001925420.3| PREDICTED: EF-hand domain-containing protein... 54 1e-07
>ref|NP_001123422.1| allograft inflammatory factor 1 [Sus scrofa].
Length = 147
Score = 285 bits (729), Expect = 2e-77
Identities = 145/145 (100%), Positives = 145/145 (100%)
Frame = +1
Query: 220 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 399
QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN
Sbjct: 3 QTLDLQGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGN 62
Query: 400 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 579
GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL
Sbjct: 63 GDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMIL 122
Query: 580 MYEEKAREQEKPTGPPAKKAISELP 654
MYEEKAREQEKPTGPPAKKAISELP
Sbjct: 123 MYEEKAREQEKPTGPPAKKAISELP 147
>ref|XP_003353736.1| PREDICTED: allograft inflammatory factor 1-like isoform 1 [Sus
scrofa].
Length = 150
Score = 193 bits (490), Expect = 1e-49
Identities = 93/141 (65%), Positives = 115/141 (81%), Gaps = 1/141 (0%)
Frame = +1
Query: 235 QGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDI 414
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+
Sbjct: 10 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 69
Query: 415 MSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEK 594
MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 70 MSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 129
Query: 595 AREQE-KPTGPPAKKAISELP 654
A E KP GPP ++ I+ LP
Sbjct: 130 ANESSPKPVGPPPERDIASLP 150
>ref|XP_003353737.1| PREDICTED: allograft inflammatory factor 1-like isoform 2 [Sus
scrofa].
Length = 155
Score = 159 bits (403), Expect = 2e-39
Identities = 75/123 (60%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Frame = +1
Query: 289 EINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLE 468
++ ++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+MSLKRM+EKLGVPKTHLE
Sbjct: 33 QVLEEFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLE 92
Query: 469 LKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEKAREQE-KPTGPPAKKAIS 645
+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E KA E KP GPP ++ I+
Sbjct: 93 MKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 152
Query: 646 ELP 654
LP
Sbjct: 153 SLP 155
>ref|XP_003356207.1| PREDICTED: EF-hand domain-containing protein D2-like [Sus scrofa].
Length = 239
Score = 57.0 bits (136), Expect = 1e-08
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 322 YSSDEDLSSK-LEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSS 498
Y+ ++ S K ++ ++ + ++D +G ID+M LK M+EKLG P+THL LK +IKEV
Sbjct: 82 YTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDE 141
Query: 499 GSGETFSYSDFL 534
S+ +FL
Sbjct: 142 DFDSKLSFREFL 153
>ref|XP_003127676.1| PREDICTED: EF-hand domain-containing protein D2-like [Sus scrofa].
Length = 239
Score = 57.0 bits (136), Expect = 1e-08
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 322 YSSDEDLSSK-LEAFKQKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSS 498
Y+ ++ S K ++ ++ + ++D +G ID+M LK M+EKLG P+THL LK +IKEV
Sbjct: 82 YTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDE 141
Query: 499 GSGETFSYSDFL 534
S+ +FL
Sbjct: 142 DFDSKLSFREFL 153
>ref|XP_001925420.3| PREDICTED: EF-hand domain-containing protein D1-like [Sus scrofa].
Length = 183
Score = 53.9 bits (128), Expect = 1e-07
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +1
Query: 367 QKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFL 534
++ + +D +G ID+M LK M+EKLG P+THL LK +IKEV S+ +FL
Sbjct: 41 KRLLRYDAGRDGYIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFL 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,247,652
Number of extensions: 559626
Number of successful extensions: 1905
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1903
Number of HSP's successfully gapped: 6
Length of query: 304
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 205
Effective length of database: 8,879,129
Effective search space: 1820221445
Effective search space used: 1820221445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002868
(913 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 442 e-121
Sscrofa_Chr01 62 6e-07
>Sscrofa_Chr07
|| Length = 134764511
Score = 442 bits (223), Expect = e-121
Identities = 226/227 (99%)
Strand = Plus / Minus
Query: 13 gtccctcttcttcctgggtgctagtgtcagcagaagccgatggggaagtgaggcctggga 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27522942 gtccctcttcttcctgggtgctagtgtcagcagaagccgatggggaagtgaggcctggga 27522883
Query: 73 cttagaggaggagggaatggggcgaaaggggaagtttgggaggaaggcctccaggcagcg 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27522882 cttagaggaggagggaatggggcgaaaggggaagtttgggaggaaggcctccaggcagct 27522823
Query: 133 gctgggagaggagagccggcagacagagaggtggcagcctggtctgtctcctccagcatc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27522822 gctgggagaggagagccggcagacagagaggtggcagcctggtctgtctcctccagcatc 27522763
Query: 193 tccaccagcatcggctgagctatgagccaaaccctggatttacaggg 239
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27522762 tccaccagcatcggctgagctatgagccaaaccctggatttacaggg 27522716
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 573 gatcctgatgtacgaagagaaagcgagagaacaggaaaagccaacgggtcctccggccaa 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27521003 gatcctgatgtacgaagagaaagcgagagaacaggaaaagccaacgggtcctccggccaa 27520944
Query: 633 gaaggctatctctgagttgccctgatttgtggtgggggagttgtggtggaattgaagggg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27520943 gaaggctatctctgagttgccctgatttgtggtgggggagttgtggtggaattgaagggg 27520884
Query: 693 cttctaatgaccccaacatggaaaaagaaggccaacttgtgagccagagccaatctaatt 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27520883 cttctaatgaccccaacatggaaaaagaaggccaacttgtgagccagagccaatctaatt 27520824
Query: 753 taaataaatcatcttccgtcgt 774
||||||||||||||||||||||
Sbjct: 27520823 taaataaatcatcttccgtcgt 27520802
Score = 327 bits (165), Expect = 6e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 409 gatattatgtccctgaaacgaatgctggagaagcttggggtccccaagacccacctggag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27521712 gatattatgtccctgaaacgaatgctggagaagcttggggtccccaagacccacctggag 27521653
Query: 469 ctaaagaaattaatcaaggaggtatccagtggctctggggagactttcagctactctgac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27521652 ctaaagaaattaatcaaggaggtatccagtggctctggggagactttcagctactctgac 27521593
Query: 529 tttctcaagatgatgttgggcaagagatctgccatcctaaaaatg 573
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27521592 tttctcaagatgatgttgggcaagagatctgccatcctaaaaatg 27521548
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 299 agcaattcctggatgatcccaaatatagcagtgatgaggacctgtcctccaaactggaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27522354 agcaattcctggatgatcccaaatatagcagtgatgaggacctgtcctccaaactggaag 27522295
Query: 359 ccttcaaac 367
|||||||||
Sbjct: 27522294 ccttcaaac 27522286
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 238 ggaggaaaagccttcgggctgctgaaggcccagcaggaagagagactcaatgaaatcaa 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27522522 ggaggaaaagccttcgggctgctgaaggcccagcaggaagagagactcaatgaaatcaa 27522464
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 368 agaaatacatggagtttgacctgaatggaaatggtgatattg 409
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27521954 agaaatacatggagtttgacctgaatggaaatggtgatattg 27521913
>Sscrofa_Chr01
|| Length = 315321322
Score = 61.9 bits (31), Expect = 6e-07
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 434 tggagaagcttggggtccccaagacccacctggag 468
|||||||||| ||||||||||||||||||||||||
Sbjct: 305120984 tggagaagctcggggtccccaagacccacctggag 305121018
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,883,699
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 7
Length of query: 913
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 892
Effective length of database: 2,808,413,156
Effective search space: 2505104535152
Effective search space used: 2505104535152
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)