Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002869
(1082 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178260.1| E3 ubiquitin-protein ligase RNF19A [Bos taur... 380 e-106
Alignment gi|XP_002692830.1| PREDICTED: ring finger protein 19A [Bos taur... 380 e-106
Alignment gi|NP_001192591.1| E3 ubiquitin-protein ligase RNF19B [Bos taur... 156 3e-38
Alignment gi|XP_002707849.1| PREDICTED: ring finger protein 19B-like [Bos... 156 3e-38
>ref|NP_001178260.1| E3 ubiquitin-protein ligase RNF19A [Bos taurus].
Length = 838
Score = 380 bits (977), Expect = e-106
Identities = 187/225 (83%), Positives = 191/225 (84%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEI + KYNEGLC+NTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIDFIFKYNEGLCVNTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQ+GDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQVGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_002692830.1| PREDICTED: ring finger protein 19A [Bos taurus].
Length = 838
Score = 380 bits (977), Expect = e-106
Identities = 187/225 (83%), Positives = 191/225 (84%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEI + KYNEGLC+NTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIDFIFKYNEGLCVNTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQ+GDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQVGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|NP_001192591.1| E3 ubiquitin-protein ligase RNF19B [Bos taurus].
Length = 732
Score = 156 bits (394), Expect = 3e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 112 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 171
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 172 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 207
>ref|XP_002707849.1| PREDICTED: ring finger protein 19B-like [Bos taurus].
Length = 733
Score = 156 bits (394), Expect = 3e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 113 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 172
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 173 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,833,163
Number of extensions: 806689
Number of successful extensions: 3731
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3702
Number of HSP's successfully gapped: 4
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002869
(1082 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856466.1| PREDICTED: similar to ring finger protein 19 is... 386 e-107
Alignment gi|XP_856427.1| PREDICTED: similar to ring finger protein 19 is... 386 e-107
Alignment gi|XP_856380.1| PREDICTED: similar to ring finger protein 19 is... 386 e-107
Alignment gi|XP_856341.1| PREDICTED: similar to ring finger protein 19 is... 386 e-107
Alignment gi|XP_856300.1| PREDICTED: similar to ring finger protein 19 is... 386 e-107
Alignment gi|XP_532284.2| PREDICTED: similar to RING finger protein 19 (D... 386 e-107
Alignment gi|XP_848454.1| PREDICTED: similar to ring finger protein 19 is... 386 e-107
Alignment gi|XP_856219.1| PREDICTED: similar to ring finger protein 19 is... 153 3e-37
>ref|XP_856466.1| PREDICTED: similar to ring finger protein 19 isoform 14 [Canis
familiaris].
Length = 826
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_856427.1| PREDICTED: similar to ring finger protein 19 isoform 13 [Canis
familiaris].
Length = 842
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_856380.1| PREDICTED: similar to ring finger protein 19 isoform 12 [Canis
familiaris].
Length = 832
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_856341.1| PREDICTED: similar to ring finger protein 19 isoform 11 [Canis
familiaris].
Length = 839
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_856300.1| PREDICTED: similar to ring finger protein 19 isoform 10 [Canis
familiaris].
Length = 831
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_532284.2| PREDICTED: similar to RING finger protein 19 (Dorfin) (Double
ring-finger protein) (p38 protein) isoform 6 [Canis
familiaris].
Length = 784
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_848454.1| PREDICTED: similar to ring finger protein 19 isoform 7 [Canis
familiaris].
Length = 838
Score = 386 bits (992), Expect = e-107
Identities = 191/225 (84%), Positives = 193/225 (85%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLCINTDP+SILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCINTDPDSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_856219.1| PREDICTED: similar to ring finger protein 19 isoform 9 [Canis
familiaris].
Length = 629
Score = 153 bits (386), Expect = 3e-37
Identities = 70/72 (97%), Positives = 70/72 (97%)
Frame = +2
Query: 782 SCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVAD 961
SCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVAD
Sbjct: 34 SCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVAD 93
Query: 962 PDCRWGSAPDCG 997
PDCRW APDCG
Sbjct: 94 PDCRWCPAPDCG 105
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,531,887
Number of extensions: 837267
Number of successful extensions: 4163
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4103
Number of HSP's successfully gapped: 8
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002869
(1082 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904355.1| E3 ubiquitin-protein ligase RNF19A [Homo sapien... 381 e-106
Alignment gi|NP_056250.3| E3 ubiquitin-protein ligase RNF19A [Homo sapien... 381 e-106
Alignment gi|NP_001120833.1| E3 ubiquitin-protein ligase RNF19B isoform b... 156 4e-38
Alignment gi|NP_699172.2| E3 ubiquitin-protein ligase RNF19B isoform a [H... 156 4e-38
>ref|NP_904355.1| E3 ubiquitin-protein ligase RNF19A [Homo sapiens].
Length = 838
Score = 381 bits (978), Expect = e-106
Identities = 188/225 (83%), Positives = 191/225 (84%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLC+NTDP SIL SILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFP+IMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|NP_056250.3| E3 ubiquitin-protein ligase RNF19A [Homo sapiens].
Length = 838
Score = 381 bits (978), Expect = e-106
Identities = 188/225 (83%), Positives = 191/225 (84%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIG +SKYNEGLC+NTDP SIL SILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFP+IMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|NP_001120833.1| E3 ubiquitin-protein ligase RNF19B isoform b [Homo sapiens].
Length = 587
Score = 156 bits (394), Expect = 4e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 176
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 212
>ref|NP_699172.2| E3 ubiquitin-protein ligase RNF19B isoform a [Homo sapiens].
Length = 732
Score = 156 bits (394), Expect = 4e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 176
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,850,582
Number of extensions: 827473
Number of successful extensions: 3743
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3718
Number of HSP's successfully gapped: 4
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002869
(1082 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038951.1| E3 ubiquitin-protein ligase RNF19A [Mus musculu... 370 e-103
Alignment gi|NP_083495.1| E3 ubiquitin-protein ligase RNF19B [Mus musculu... 156 3e-38
>ref|NP_038951.1| E3 ubiquitin-protein ligase RNF19A [Mus musculus].
Length = 840
Score = 370 bits (951), Expect = e-103
Identities = 183/225 (81%), Positives = 188/225 (83%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEI + KYNEGLC+N D +SILMSILDMSLH+QMGSDRDLQ
Sbjct: 1 MQEQEISFIFKYNEGLCMNIDSDSILMSILDMSLHQQMGSDRDLQSSTSSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMC DKNSIFSTNTSSDNGLT
Sbjct: 61 KQRRISIGSLFRRKKDSKRKSRELNGGVDGIASIESIHSEMCADKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFP+IMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|NP_083495.1| E3 ubiquitin-protein ligase RNF19B [Mus musculus].
Length = 731
Score = 156 bits (394), Expect = 3e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 114 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 173
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 174 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,551,501
Number of extensions: 703580
Number of successful extensions: 3111
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3093
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002869
(1082 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033095.1| E3 ubiquitin-protein ligase RNF19A [Sus scro... 390 e-109
Alignment gi|XP_003356348.1| PREDICTED: e3 ubiquitin-protein ligase RNF19... 156 2e-38
Alignment gi|XP_003356347.1| PREDICTED: e3 ubiquitin-protein ligase RNF19... 156 2e-38
>ref|NP_001033095.1| E3 ubiquitin-protein ligase RNF19A [Sus scrofa].
Length = 838
Score = 390 bits (1003), Expect = e-109
Identities = 194/225 (86%), Positives = 194/225 (86%)
Frame = +2
Query: 323 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQXXXXXXXXXXXXXXX 502
MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQ
Sbjct: 1 MQEQEIGLLSKYNEGLCINTDPNSILMSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 503 XXRRISIGSLFXXXXXXXXXXXXLNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 682
RRISIGSLF LNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKENKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 683 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 862
SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 863 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRW APDCG
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
>ref|XP_003356348.1| PREDICTED: e3 ubiquitin-protein ligase RNF19B isoform 2 [Sus
scrofa].
Length = 586
Score = 156 bits (394), Expect = 2e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 116 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 175
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 176 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 211
>ref|XP_003356347.1| PREDICTED: e3 ubiquitin-protein ligase RNF19B isoform 1 [Sus
scrofa].
Length = 732
Score = 156 bits (394), Expect = 2e-38
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 710 IECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 889
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 116 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 175
Query: 890 LILSDDVLMEKYEEFMLRRWLVADPDCRWGSAPDCG 997
L+L+D LM KYEEFMLRR+L +DPDCRW APDCG
Sbjct: 176 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCG 211
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,349,743
Number of extensions: 515292
Number of successful extensions: 2506
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2488
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002869
(1082 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1487 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1487 bits (750), Expect = 0.0
Identities = 782/795 (98%)
Strand = Plus / Plus
Query: 229 agaacatctgtgataagtcttctataaattgaactttttcaagaattctcttaaggagcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39611816 agaacatctgtgataagtcttctataaattgaactttttcaagaattctcttaaggagcc 39611875
Query: 289 acgtaggattttcttacaccatgacttaatctgaatgcaagaacaagaaataggtttgct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39611876 acgtaggattttcttacaccatgacttaatctgaatgcaagaacaagaaataggtttgct 39611935
Query: 349 ctctaaatataatgaagggctgtgtataaacacagaccctaactcaattctaatgagtat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39611936 ctctaaatataatgaagggctgtgtataaacacagaccctaactcaattctaatgagtat 39611995
Query: 409 tttagacatgagtttacatcggcaaatgggttcggatcgagatcttcagtcttctgcatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39611996 tttagacatgagtttacatcggcaaatgggttcggatcgagatcttcagtcttctgcatc 39612055
Query: 469 atctgtaagcttgccttcagtcaaaaaggcacccnnnnnnngaagaatttcaataggctc 528
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 39612056 atctgtaagcttgccttcagtcaaaaaggcacccaaaaaaagaagaatttcaataggctc 39612115
Query: 529 tctttttcggaggaaaaaggaaaacaaacgtaaatcaagggagctaaatggcggggtgga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612116 tctttttcggaggaaaaaggaaaacaaacgtaaatcaagggagctaaatggcggggtgga 39612175
Query: 589 tggaattgcgagtatcgaaagtatacattctgaaatgtgtactgataagaactccatttt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612176 tggaattgcgagtatcgaaagtatacattctgaaatgtgtactgataagaactccatttt 39612235
Query: 649 ttctacaaatacctcctctgacaatggattaacttccatcagcaaacaaattggagactt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612236 ttctacaaatacctcctctgacaatggattaacttccatcagcaaacaaattggagactt 39612295
Query: 709 catagagtgccccttgtgccttttgcggcattctaaagacagatttcctgagataatgac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612296 catagagtgccccttgtgccttttgcggcattctaaagacagatttcctgagataatgac 39612355
Query: 769 ttgtcatcatagatcttgtgtggattgcttgcgacaatacctaaggatagaaatttctga 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612356 ttgtcatcatagatcttgtgtggattgcttgcgacaatacctaaggatagaaatttctga 39612415
Query: 829 aagtagagttaatatcagttgcccagaatgtactgaacggtttaatccccatgatattcg 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612416 aagtagagttaatatcagttgcccagaatgtactgaacggtttaatccccatgatattcg 39612475
Query: 889 cttgatattaagtgatgatgtcttgatggaaaaatatgaagaatttatgcttagacggtg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39612476 cttgatattaagtgatgatgtcttgatggaaaaatatgaagaatttatgcttagacggtg 39612535
Query: 949 gcttgttgcagatcctgattgtaggtggggttcagctccagactgtgggtaagaagaaaa 1008
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 39612536 gcttgttgcagatcctgattgtaggtggtgtccagctccagactgtgggtaagaagaatt 39612595
Query: 1009 ttgttgatttttctt 1023
| ||||||||||||
Sbjct: 39612596 tgtttgatttttctt 39612610
Score = 276 bits (139), Expect = 2e-71
Identities = 153/160 (95%)
Strand = Plus / Plus
Query: 1 gttgcagcgctggttcccgggaacagccgtcaagacagaactgcggaggaggagttgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39576097 gttgcagcgctggttcccgggaacagccgtcaagacagaactgcggaggaggagttgggg 39576156
Query: 61 aaagcggctttcgggacccctcctctccgtnnnnnnngccccagctgagaggcgcctcgg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 39576157 aaagcggctttcgggacccctcctctccgtcccccccgccccagctgagaggcgcctcgg 39576216
Query: 121 cgggtctgaggaatcgtcctccgtacttcctccagctttt 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 39576217 cgggtctgaggaatcgtcctccgtacttcctccagctttt 39576256
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,727,276
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 2
Length of query: 1082
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1061
Effective length of database: 2,808,413,156
Effective search space: 2979726358516
Effective search space used: 2979726358516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)