Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002874
(1570 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776643.1| tryptophanyl-tRNA synthetase, cytoplasmic [Bos ... 878 0.0
Alignment gi|XP_001256627.2| PREDICTED: Tryptophanyl-tRNA synthetase, cyt... 758 0.0
Alignment gi|NP_001230249.1| glutamyl-prolyl-tRNA synthetase [Bos taurus]. 65 1e-10
>ref|NP_776643.1| tryptophanyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 475
Score = 878 bits (2268), Expect(2) = 0.0
Identities = 429/464 (92%), Positives = 449/464 (96%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+ NGEQGC SPLELF+SIAAQGELVR LKAR+AAKDEIDSAVKMLLSLK SYKAA G
Sbjct: 1 MADMSNGEQGCGSPLELFHSIAAQGELVRDLKARNAAKDEIDSAVKMLLSLKTSYKAATG 60
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
EDYK DCPPG+ AP GLDATEA +DFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE
Sbjct: 61 EDYKVDCPPGDPAPESGEGLDATEADEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 120
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
L++RIERATGQRPHRFLRRGIFFSHRDM+Q+LDAYENKKPFYLYTGRGPSSEAMHVGHLI
Sbjct: 121 LVNRIERATGQRPHRFLRRGIFFSHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHLI 180
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+GYAVENAKDI CGFD+NKTFIF
Sbjct: 181 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDI-TCGFDINKTFIF 239
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFS+SFPQ
Sbjct: 240 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQ 299
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTD+QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 300 IFRDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 359
Query: 1213 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQ 1392
NSSIFLTDTAKQIKTKVNKHAFSGGRDT+EEHRQFGGNCDVDVSFMYLTFFLEDDD+LEQ
Sbjct: 360 NSSIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 419
Query: 1393 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
IR+DY+SGAMLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 420 IRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKE 463
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLSYDF+
Sbjct: 465 MTPRKLSYDFQ 475
>ref|XP_001256627.2| PREDICTED: Tryptophanyl-tRNA synthetase, cytoplasmic-like [Bos
taurus].
Length = 461
Score = 758 bits (1958), Expect(2) = 0.0
Identities = 383/465 (82%), Positives = 412/465 (88%), Gaps = 1/465 (0%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+ NGEQGC SPLELF+SIAAQGELVR LKAR+AAK E+ SA + L + S
Sbjct: 1 MADMSNGEQGCGSPLELFHSIAAQGELVRDLKARNAAK-EVSSAGSLELLFEAS--RVPR 57
Query: 313 EDYKADCPPGNRAPGIDSGLDATE-AGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDK 489
ED G+R G E +G + + W+ + + +RFGSSKIDK
Sbjct: 58 EDSSTSLSKGSRC-----GRPRCELSGAEELTTWSFAEAPVR--------IRFGSSKIDK 104
Query: 490 ELIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHL 669
EL++RIERATGQRPHRFLRRGIFFSHRDM+Q+LDAYENKKPFYLYTGRGPSSEAMHVGHL
Sbjct: 105 ELVNRIERATGQRPHRFLRRGIFFSHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHL 164
Query: 670 IPFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFI 849
IPFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+GYAVENAKDIIACGFD+NKTFI
Sbjct: 165 IPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFI 224
Query: 850 FSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFP 1029
FSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFS+SFP
Sbjct: 225 FSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFP 284
Query: 1030 QIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASD 1209
QIFRDRTD+QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASD
Sbjct: 285 QIFRDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASD 344
Query: 1210 PNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLE 1389
PNSSIFLTDTAKQIKTKVNKHAFSGGRDT+EEHRQFGGNCDVDVSFMYLTFFLEDDD+LE
Sbjct: 345 PNSSIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLE 404
Query: 1390 QIRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
QIR+DY+SGAMLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 405 QIRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKE 449
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLSYDF+
Sbjct: 451 MTPRKLSYDFQ 461
>ref|NP_001230249.1| glutamyl-prolyl-tRNA synthetase [Bos taurus].
Length = 1511
Score = 65.5 bits (158), Expect = 1e-10
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPPGNRAP 354
L L+N +AAQG++VR LKA+ A K++ID+AVK LL+LK YK G++YK PP
Sbjct: 750 LVLYNRVAAQGDVVRELKAKKATKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPPAAVGQ 809
Query: 355 GIDS 366
I S
Sbjct: 810 NISS 813
Score = 59.7 bits (143), Expect = 7e-09
Identities = 30/60 (50%), Positives = 43/60 (71%)
Frame = +1
Query: 145 PNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
P+G + + L LF+ +A+QGE+VR LKA A+KD++D+AV+ LL LK YK+ G DYK
Sbjct: 892 PSGPETPEAKL-LFDKVASQGEVVRKLKAEKASKDQVDTAVQELLQLKAQYKSLAGVDYK 950
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPPGNRA 351
L++ +AAQGE+VR LKA A K +++ AV+ LLSLK YK G++Y PP +++
Sbjct: 825 LYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGKEYVPGQPPSSQS 881
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,762,478
Number of extensions: 1500975
Number of successful extensions: 5577
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5573
Number of HSP's successfully gapped: 7
Length of query: 523
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 416
Effective length of database: 14,140,958
Effective search space: 5882638528
Effective search space used: 5882638528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002874
(1570 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537554.1| PREDICTED: similar to Tryptophanyl-tRNA synthet... 872 0.0
Alignment gi|XP_868547.1| PREDICTED: similar to Tryptophanyl-tRNA synthet... 867 0.0
Alignment gi|XP_868542.1| PREDICTED: similar to Tryptophanyl-tRNA synthet... 852 0.0
Alignment gi|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synt... 66 8e-11
Alignment gi|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synt... 66 8e-11
Alignment gi|XP_858912.1| PREDICTED: similar to glutamyl-prolyl tRNA synt... 66 8e-11
Alignment gi|XP_858867.1| PREDICTED: similar to glutamyl-prolyl tRNA synt... 66 8e-11
Alignment gi|XP_849468.1| PREDICTED: similar to glutamyl-prolyl tRNA synt... 66 8e-11
>ref|XP_537554.1| PREDICTED: similar to Tryptophanyl-tRNA synthetase (Tryptophan--tRNA
ligase) (TrpRS) (IFP53) (hWRS) isoform 1 [Canis
familiaris].
Length = 476
Score = 872 bits (2252), Expect(2) = 0.0
Identities = 427/464 (92%), Positives = 447/464 (96%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+PNGEQG +SPLELFNSIAAQGELVRSLKA A+KDEIDSAVK+LLSLKMSYKA +G
Sbjct: 1 MADMPNGEQGFASPLELFNSIAAQGELVRSLKAGKASKDEIDSAVKLLLSLKMSYKATVG 60
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
E+YKADCPP AP GL+A EA +DFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE
Sbjct: 61 EEYKADCPPARPAPENSRGLNAAEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 120
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
L++RIERATGQ+PHRFLRRGIFFSHRDMNQ+LDAYENKKPFYLYTGRGPSSEAMHVGHLI
Sbjct: 121 LVNRIERATGQKPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHVGHLI 180
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+GYAVENAKDIIACGFD+ KTFIF
Sbjct: 181 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDIKKTFIF 240
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSD IGKISFPAIQAAPSFS+SFPQ
Sbjct: 241 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDSIGKISFPAIQAAPSFSNSFPQ 300
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 301 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 360
Query: 1213 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQ 1392
NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDD+LEQ
Sbjct: 361 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 420
Query: 1393 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
IRKDY+SG MLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 421 IRKDYTSGDMLTGELKKTLIEVLQPLIAEHQARRKEVTDEIVKE 464
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLSYDF+
Sbjct: 466 MTPRKLSYDFQ 476
>ref|XP_868547.1| PREDICTED: similar to Tryptophanyl-tRNA synthetase (Tryptophan--tRNA
ligase) (TrpRS) (IFP53) (hWRS) isoform 3 [Canis
familiaris].
Length = 476
Score = 867 bits (2241), Expect(2) = 0.0
Identities = 425/464 (91%), Positives = 445/464 (95%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+PNGEQG +SPLELFNSIAAQGELVRSLKA A+KDEIDSAVK+LLSLKMSYKA +G
Sbjct: 1 MADMPNGEQGFASPLELFNSIAAQGELVRSLKAGKASKDEIDSAVKLLLSLKMSYKATVG 60
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
E+YKADCPP AP GL+A EA +DFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE
Sbjct: 61 EEYKADCPPARPAPENSRGLNAAEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 120
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
L++RIERATGQ+PHRFLRRGIFFSHRDMNQ+LDAYENKKPFYLYTGRGPSSEAMHVGHLI
Sbjct: 121 LVNRIERATGQKPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHVGHLI 180
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+GYAVENAKDIIACGFD+ KTFIF
Sbjct: 181 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDIKKTFIF 240
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDLDYMG PGFYKNVVKIQKHVTFNQVKGIFGFTDSD IGKISFPAIQAAPSFS+SFPQ
Sbjct: 241 SDLDYMGTCPGFYKNVVKIQKHVTFNQVKGIFGFTDSDSIGKISFPAIQAAPSFSNSFPQ 300
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 301 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 360
Query: 1213 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQ 1392
NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDD+LEQ
Sbjct: 361 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 420
Query: 1393 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
IRKDY+SG MLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 421 IRKDYTSGDMLTGELKKTLIEVLQPLIAEHQARRKEVTDEIVKE 464
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLSYDF+
Sbjct: 466 MTPRKLSYDFQ 476
>ref|XP_868542.1| PREDICTED: similar to Tryptophanyl-tRNA synthetase (Tryptophan--tRNA
ligase) (TrpRS) (IFP53) (hWRS) isoform 2 [Canis
familiaris].
Length = 476
Score = 852 bits (2201), Expect(2) = 0.0
Identities = 423/467 (90%), Positives = 443/467 (94%), Gaps = 3/467 (0%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+PNGEQG +SPLELFNSIAAQGELVRSLKA A+KDEIDSAVK+LLSLKMSYKA +G
Sbjct: 1 MADMPNGEQGFASPLELFNSIAAQGELVRSLKAGKASKDEIDSAVKLLLSLKMSYKATVG 60
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
E+YKADCPP AP GL+A EA +DFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE
Sbjct: 61 EEYKADCPPARPAPENSRGLNAAEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 120
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
L++RIERATGQ+PHRFLRRGIFFSHRDMNQ+LDAYENKKPFYLYTGRGPSSEAMHVGHLI
Sbjct: 121 LVNRIERATGQKPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHVGHLI 180
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+GYAVENAKDIIACGFD+ KTFIF
Sbjct: 181 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDIKKTFIF 240
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIG---KISFPAIQAAPSFSSS 1023
SDLDYMG FYKNVVKIQKHVTFNQVKGIFGFTDSD IG KISFPAIQAAPSFS+S
Sbjct: 241 SDLDYMGC---FYKNVVKIQKHVTFNQVKGIFGFTDSDSIGKWRKISFPAIQAAPSFSNS 297
Query: 1024 FPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSA 1203
FPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSA
Sbjct: 298 FPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSA 357
Query: 1204 SDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDR 1383
SDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDD+
Sbjct: 358 SDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDK 417
Query: 1384 LEQIRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
LEQIRKDY+SG MLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 418 LEQIRKDYTSGDMLTGELKKTLIEVLQPLIAEHQARRKEVTDEIVKE 464
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLSYDF+
Sbjct: 466 MTPRKLSYDFQ 476
>ref|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 5
[Canis familiaris].
Length = 1508
Score = 66.2 bits (160), Expect = 8e-11
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPP 339
L L+N +AAQG++VR LKA+ AAK++ID+AVK LL+LK YK G++YK PP
Sbjct: 750 LVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 804
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A+QGE+VR LKA A+KD++D AV+ LL LK YK+ G +YK
Sbjct: 900 LFDKVASQGEVVRKLKAEKASKDQVDVAVQELLQLKAQYKSLTGVEYK 947
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 136 ADVPNGEQGCSSPL----ELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKA 303
A VPN S+ + L++ +AAQGE+V LKA A K +++ AV+ LLSLK YK
Sbjct: 805 AVVPNVSSTSSASIVESKSLYDEVAAQGEVVCKLKAEKAPKAKVNEAVECLLSLKAQYKE 864
Query: 304 AMGEDYKADCPPGNRAPGIDSGLDAT 381
G++Y PP +++ +G +++
Sbjct: 865 KTGKEYIPGQPPLSQSSHSTAGSESS 890
>ref|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
[Canis familiaris].
Length = 1534
Score = 66.2 bits (160), Expect = 8e-11
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPP 339
L L+N +AAQG++VR LKA+ AAK++ID+AVK LL+LK YK G++YK PP
Sbjct: 751 LVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 805
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A+QGE+VR LKA A+KD++D AV+ LL LK YK+ G +YK
Sbjct: 901 LFDKVASQGEVVRKLKAEKASKDQVDVAVQELLQLKAQYKSLTGVEYK 948
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 136 ADVPNGEQGCSSPL----ELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKA 303
A VPN S+ + L++ +AAQGE+V LKA A K +++ AV+ LLSLK YK
Sbjct: 806 AVVPNVSSTSSASIVESKSLYDEVAAQGEVVCKLKAEKAPKAKVNEAVECLLSLKAQYKE 865
Query: 304 AMGEDYKADCPPGNRAPGIDSGLDAT 381
G++Y PP +++ +G +++
Sbjct: 866 KTGKEYIPGQPPLSQSSHSTAGSESS 891
>ref|XP_858912.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 4
[Canis familiaris].
Length = 1465
Score = 66.2 bits (160), Expect = 8e-11
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPP 339
L L+N +AAQG++VR LKA+ AAK++ID+AVK LL+LK YK G++YK PP
Sbjct: 707 LVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 761
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A+QGE+VR LKA A+KD++D AV+ LL LK YK+ G +YK
Sbjct: 857 LFDKVASQGEVVRKLKAEKASKDQVDVAVQELLQLKAQYKSLTGVEYK 904
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 136 ADVPNGEQGCSSPL----ELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKA 303
A VPN S+ + L++ +AAQGE+V LKA A K +++ AV+ LLSLK YK
Sbjct: 762 AVVPNVSSTSSASIVESKSLYDEVAAQGEVVCKLKAEKAPKAKVNEAVECLLSLKAQYKE 821
Query: 304 AMGEDYKADCPPGNRAPGIDSGLDAT 381
G++Y PP +++ +G +++
Sbjct: 822 KTGKEYIPGQPPLSQSSHSTAGSESS 847
>ref|XP_858867.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 3
[Canis familiaris].
Length = 1183
Score = 66.2 bits (160), Expect = 8e-11
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPP 339
L L+N +AAQG++VR LKA+ AAK++ID+AVK LL+LK YK G++YK PP
Sbjct: 751 LVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 805
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A+QGE+VR LKA A+KD++D AV+ LL LK YK+ G +YK
Sbjct: 901 LFDKVASQGEVVRKLKAEKASKDQVDVAVQELLQLKAQYKSLTGVEYK 948
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 136 ADVPNGEQGCSSPL----ELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKA 303
A VPN S+ + L++ +AAQGE+V LKA A K +++ AV+ LLSLK YK
Sbjct: 806 AVVPNVSSTSSASIVESKSLYDEVAAQGEVVCKLKAEKAPKAKVNEAVECLLSLKAQYKE 865
Query: 304 AMGEDYKADCPPGNRAPGIDSGLDAT 381
G++Y PP +++ +G +++
Sbjct: 866 KTGKEYIPGQPPLSQSSHSTAGSESS 891
>ref|XP_849468.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 2
[Canis familiaris].
Length = 1509
Score = 66.2 bits (160), Expect = 8e-11
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPP 339
L L+N +AAQG++VR LKA+ AAK++ID+AVK LL+LK YK G++YK PP
Sbjct: 751 LVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 805
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A+QGE+VR LKA A+KD++D AV+ LL LK YK+ G +YK
Sbjct: 901 LFDKVASQGEVVRKLKAEKASKDQVDVAVQELLQLKAQYKSLTGVEYK 948
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 136 ADVPNGEQGCSSPL----ELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKA 303
A VPN S+ + L++ +AAQGE+V LKA A K +++ AV+ LLSLK YK
Sbjct: 806 AVVPNVSSTSSASIVESKSLYDEVAAQGEVVCKLKAEKAPKAKVNEAVECLLSLKAQYKE 865
Query: 304 AMGEDYKADCPPGNRAPGIDSGLDAT 381
G++Y PP +++ +G +++
Sbjct: 866 KTGKEYIPGQPPLSQSSHSTAGSESS 891
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,195,524
Number of extensions: 1550852
Number of successful extensions: 5799
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5795
Number of HSP's successfully gapped: 21
Length of query: 523
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 416
Effective length of database: 15,307,552
Effective search space: 6367941632
Effective search space used: 6367941632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002874
(1570 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776049.1| tryptophanyl-tRNA synthetase, cytoplasmic isofo... 862 0.0
Alignment gi|NP_004175.2| tryptophanyl-tRNA synthetase, cytoplasmic isofo... 862 0.0
Alignment gi|NP_998811.1| tryptophanyl-tRNA synthetase, cytoplasmic isofo... 809 0.0
Alignment gi|NP_998810.1| tryptophanyl-tRNA synthetase, cytoplasmic isofo... 809 0.0
Alignment gi|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sa... 67 5e-11
>ref|NP_776049.1| tryptophanyl-tRNA synthetase, cytoplasmic isoform a [Homo sapiens].
Length = 471
Score = 862 bits (2227), Expect(2) = 0.0
Identities = 427/461 (92%), Positives = 443/461 (96%)
Frame = +1
Query: 142 VPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDY 321
+PN E +S LELFNSIA QGELVRSLKA +A+KDEIDSAVKML+SLKMSYKAA GEDY
Sbjct: 1 MPNSEP--ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDY 58
Query: 322 KADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELID 501
KADCPPGN AP + G DATEA +DFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELI+
Sbjct: 59 KADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELIN 118
Query: 502 RIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI 681
RIERATGQRPH FLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI
Sbjct: 119 RIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI 178
Query: 682 FTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIFSDL 861
FTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+ YAVENAKDIIACGFD+NKTFIFSDL
Sbjct: 179 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDL 238
Query: 862 DYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIFR 1041
DYMGMS GFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFS+SFPQIFR
Sbjct: 239 DYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFR 298
Query: 1042 DRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSS 1221
DRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSS
Sbjct: 299 DRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSS 358
Query: 1222 IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRK 1401
IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDD+LEQIRK
Sbjct: 359 IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRK 418
Query: 1402 DYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
DY+SGAMLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 419 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKE 459
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLS+DF+
Sbjct: 461 MTPRKLSFDFQ 471
>ref|NP_004175.2| tryptophanyl-tRNA synthetase, cytoplasmic isoform a [Homo sapiens].
Length = 471
Score = 862 bits (2227), Expect(2) = 0.0
Identities = 427/461 (92%), Positives = 443/461 (96%)
Frame = +1
Query: 142 VPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDY 321
+PN E +S LELFNSIA QGELVRSLKA +A+KDEIDSAVKML+SLKMSYKAA GEDY
Sbjct: 1 MPNSEP--ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDY 58
Query: 322 KADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELID 501
KADCPPGN AP + G DATEA +DFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELI+
Sbjct: 59 KADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELIN 118
Query: 502 RIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI 681
RIERATGQRPH FLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI
Sbjct: 119 RIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI 178
Query: 682 FTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIFSDL 861
FTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+ YAVENAKDIIACGFD+NKTFIFSDL
Sbjct: 179 FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDL 238
Query: 862 DYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIFR 1041
DYMGMS GFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFS+SFPQIFR
Sbjct: 239 DYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFR 298
Query: 1042 DRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSS 1221
DRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSS
Sbjct: 299 DRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSS 358
Query: 1222 IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRK 1401
IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDD+LEQIRK
Sbjct: 359 IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRK 418
Query: 1402 DYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
DY+SGAMLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 419 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKE 459
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLS+DF+
Sbjct: 461 MTPRKLSFDFQ 471
>ref|NP_998811.1| tryptophanyl-tRNA synthetase, cytoplasmic isoform b [Homo sapiens].
Length = 430
Score = 809 bits (2090), Expect(2) = 0.0
Identities = 395/418 (94%), Positives = 407/418 (97%)
Frame = +1
Query: 271 MLLSLKMSYKAAMGEDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYD 450
ML+SLKMSYKAA GEDYKADCPPGN AP + G DATEA +DFVDPWTVQTSSAKGIDYD
Sbjct: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
Query: 451 KLIVRFGSSKIDKELIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 630
KLIVRFGSSKIDKELI+RIERATGQRPH FLRRGIFFSHRDMNQVLDAYENKKPFYLYTG
Sbjct: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
Query: 631 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKD 810
RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+ YAVENAKD
Sbjct: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
Query: 811 IIACGFDVNKTFIFSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 990
IIACGFD+NKTFIFSDLDYMGMS GFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP
Sbjct: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
Query: 991 AIQAAPSFSSSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 1170
AIQAAPSFS+SFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP
Sbjct: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
Query: 1171 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 1350
ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM
Sbjct: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
Query: 1351 YLTFFLEDDDRLEQIRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
YLTFFLEDDD+LEQIRKDY+SGAMLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKE 418
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLS+DF+
Sbjct: 420 MTPRKLSFDFQ 430
>ref|NP_998810.1| tryptophanyl-tRNA synthetase, cytoplasmic isoform b [Homo sapiens].
Length = 430
Score = 809 bits (2090), Expect(2) = 0.0
Identities = 395/418 (94%), Positives = 407/418 (97%)
Frame = +1
Query: 271 MLLSLKMSYKAAMGEDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYD 450
ML+SLKMSYKAA GEDYKADCPPGN AP + G DATEA +DFVDPWTVQTSSAKGIDYD
Sbjct: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
Query: 451 KLIVRFGSSKIDKELIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 630
KLIVRFGSSKIDKELI+RIERATGQRPH FLRRGIFFSHRDMNQVLDAYENKKPFYLYTG
Sbjct: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
Query: 631 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKD 810
RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK+LTL+QA+ YAVENAKD
Sbjct: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
Query: 811 IIACGFDVNKTFIFSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 990
IIACGFD+NKTFIFSDLDYMGMS GFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP
Sbjct: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
Query: 991 AIQAAPSFSSSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 1170
AIQAAPSFS+SFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP
Sbjct: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
Query: 1171 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 1350
ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM
Sbjct: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
Query: 1351 YLTFFLEDDDRLEQIRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
YLTFFLEDDD+LEQIRKDY+SGAMLTGELKK LIEVLQPLIAEHQARRKEVTDE+VKE
Sbjct: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKE 418
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLS+DF+
Sbjct: 420 MTPRKLSFDFQ 430
>ref|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sapiens].
Length = 1512
Score = 67.0 bits (162), Expect = 5e-11
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +1
Query: 127 WKMADVPNGEQGCSSP---LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSY 297
+K P+ C++ L L+N +A QG++VR LKA+ A K+++D+AVK LLSLK Y
Sbjct: 732 FKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEY 791
Query: 298 KAAMGEDYKADCPPGNRAPGIDSGLDAT 381
K G++YK PP I S A+
Sbjct: 792 KEKTGQEYKPGNPPAEIGQNISSNSSAS 819
Score = 54.7 bits (130), Expect = 2e-07
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A+QGE+VR LK A KD++D AV+ LL LK YK+ +G +YK
Sbjct: 904 LFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYK 951
Score = 52.8 bits (125), Expect = 9e-07
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPP 339
L++ +AAQGE+VR LKA + K +I+ AV+ LLSLK YK G++Y PP
Sbjct: 826 LYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPP 878
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,978,107
Number of extensions: 1511653
Number of successful extensions: 5435
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5433
Number of HSP's successfully gapped: 11
Length of query: 523
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 416
Effective length of database: 14,770,016
Effective search space: 6144326656
Effective search space used: 6144326656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002874
(1570 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157786.1| tryptophanyl-tRNA synthetase, cytoplasmic is... 851 0.0
Alignment gi|NP_035840.3| tryptophanyl-tRNA synthetase, cytoplasmic isofo... 851 0.0
Alignment gi|NP_001157960.1| tryptophanyl-tRNA synthetase, cytoplasmic is... 851 0.0
Alignment gi|XP_922185.2| PREDICTED: tryptophanyl-tRNA synthetase, cytopl... 351 1e-96
Alignment gi|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus mus... 58 2e-08
>ref|NP_001157786.1| tryptophanyl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 475
Score = 851 bits (2198), Expect = 0.0
Identities = 414/464 (89%), Positives = 444/464 (95%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+P+GE C+SPLELFNSIA QGELVRSLKA +A KDEIDSAVKMLLSLKMSYKAAMG
Sbjct: 1 MADMPSGES-CTSPLELFNSIATQGELVRSLKAGNAPKDEIDSAVKMLLSLKMSYKAAMG 59
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
E+YKA CPPGN G + DAT+A +DFVDPWTV+TSSAKGIDYDKLIV+FGSSKIDKE
Sbjct: 60 EEYKAGCPPGNPTAGRNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKE 119
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
LI+RIERATGQRPHRFLRRGIFFSHRDMNQ+LDAYENKKPFYLYTGRGPSSEAMH+GHL+
Sbjct: 120 LINRIERATGQRPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLV 179
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQM+DDEKYLWK+LTLEQA+ Y VENAKDIIACGFD+NKTFIF
Sbjct: 180 PFIFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIF 239
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDL+YMG SPGFY+NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPA+QAAPSFS+SFP+
Sbjct: 240 SDLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPK 299
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG+PKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 300 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDP 359
Query: 1213 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQ 1392
NSSIFLTDTAKQIK+KVNKHAFSGGRDT+EEHRQFGGNC+VDVSFMYLTFFLEDDDRLEQ
Sbjct: 360 NSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQ 419
Query: 1393 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
IRKDY+SGAMLTGELKK LI+VLQPLIAEHQARRK VT+E VKE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKE 463
>ref|NP_035840.3| tryptophanyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 481
Score = 851 bits (2198), Expect = 0.0
Identities = 414/464 (89%), Positives = 444/464 (95%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+P+GE C+SPLELFNSIA QGELVRSLKA +A KDEIDSAVKMLLSLKMSYKAAMG
Sbjct: 1 MADMPSGES-CTSPLELFNSIATQGELVRSLKAGNAPKDEIDSAVKMLLSLKMSYKAAMG 59
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
E+YKA CPPGN G + DAT+A +DFVDPWTV+TSSAKGIDYDKLIV+FGSSKIDKE
Sbjct: 60 EEYKAGCPPGNPTAGRNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKE 119
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
LI+RIERATGQRPHRFLRRGIFFSHRDMNQ+LDAYENKKPFYLYTGRGPSSEAMH+GHL+
Sbjct: 120 LINRIERATGQRPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLV 179
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQM+DDEKYLWK+LTLEQA+ Y VENAKDIIACGFD+NKTFIF
Sbjct: 180 PFIFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIF 239
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDL+YMG SPGFY+NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPA+QAAPSFS+SFP+
Sbjct: 240 SDLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPK 299
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG+PKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 300 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDP 359
Query: 1213 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQ 1392
NSSIFLTDTAKQIK+KVNKHAFSGGRDT+EEHRQFGGNC+VDVSFMYLTFFLEDDDRLEQ
Sbjct: 360 NSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQ 419
Query: 1393 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
IRKDY+SGAMLTGELKK LI+VLQPLIAEHQARRK VT+E VKE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKE 463
>ref|NP_001157960.1| tryptophanyl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 475
Score = 851 bits (2198), Expect = 0.0
Identities = 414/464 (89%), Positives = 444/464 (95%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MAD+P+GE C+SPLELFNSIA QGELVRSLKA +A KDEIDSAVKMLLSLKMSYKAAMG
Sbjct: 1 MADMPSGES-CTSPLELFNSIATQGELVRSLKAGNAPKDEIDSAVKMLLSLKMSYKAAMG 59
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
E+YKA CPPGN G + DAT+A +DFVDPWTV+TSSAKGIDYDKLIV+FGSSKIDKE
Sbjct: 60 EEYKAGCPPGNPTAGRNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKE 119
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
LI+RIERATGQRPHRFLRRGIFFSHRDMNQ+LDAYENKKPFYLYTGRGPSSEAMH+GHL+
Sbjct: 120 LINRIERATGQRPHRFLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLV 179
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQM+DDEKYLWK+LTLEQA+ Y VENAKDIIACGFD+NKTFIF
Sbjct: 180 PFIFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIF 239
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDL+YMG SPGFY+NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPA+QAAPSFS+SFP+
Sbjct: 240 SDLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPK 299
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG+PKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 300 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDP 359
Query: 1213 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQ 1392
NSSIFLTDTAKQIK+KVNKHAFSGGRDT+EEHRQFGGNC+VDVSFMYLTFFLEDDDRLEQ
Sbjct: 360 NSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQ 419
Query: 1393 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
IRKDY+SGAMLTGELKK LI+VLQPLIAEHQARRK VT+E VKE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKE 463
>ref|XP_922185.2| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic-like [Mus
musculus].
Length = 192
Score = 351 bits (900), Expect = 1e-96
Identities = 167/175 (95%), Positives = 175/175 (100%)
Frame = +1
Query: 877 SPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQIFRDRTDI 1056
SPGFY+NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPA+QAAPSFS+SFP+IFRDRTDI
Sbjct: 16 SPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDI 75
Query: 1057 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD 1236
QCLIPCAIDQDPYFRMTRDVAPRIG+PKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD
Sbjct: 76 QCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD 135
Query: 1237 TAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRK 1401
TAKQIK+KVNKHAFSGGRDT+EEHRQFGGNC+VDVSFMYLTFFLEDDDRLEQIRK
Sbjct: 136 TAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRK 190
>ref|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus musculus].
Length = 1512
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPPGN 345
L++ +A QG++VR LKA+ A K++ID+AVK LL+LK YK G++YK PGN
Sbjct: 753 LYSRVAVQGDVVRELKAKKAPKEDIDAAVKQLLTLKAEYKEKTGQEYK----PGN 803
Score = 57.8 bits (138), Expect = 2e-08
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPPGNRAPGI 360
L+N +AAQGE+VR LKA A K ++ AV+ LLSLK YK G+DY PP ++
Sbjct: 826 LYNKVAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGKDYVPGQPPASQNSHS 885
Query: 361 DSGLDATEAG 390
+ +A AG
Sbjct: 886 NPVSNAQPAG 895
Score = 57.4 bits (137), Expect = 3e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 181 LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
LF+ +A QGE+VR LKA A+KD++DSAV+ LL LK YK+ G +YK
Sbjct: 904 LFDRVACQGEVVRKLKAEKASKDQVDSAVQELLQLKAQYKSLTGIEYK 951
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,206,475
Number of extensions: 1268722
Number of successful extensions: 4531
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4527
Number of HSP's successfully gapped: 7
Length of query: 523
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 417
Effective length of database: 12,433,743
Effective search space: 5184870831
Effective search space used: 5184870831
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002874
(1570 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128776.2| PREDICTED: tryptophanyl-tRNA synthetase, cyt... 768 0.0
Alignment gi|XP_003356851.1| PREDICTED: tryptophanyl-tRNA synthetase, cyt... 179 3e-46
Alignment gi|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional... 68 1e-11
>ref|XP_003128776.2| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic-like [Sus
scrofa].
Length = 526
Score = 768 bits (1982), Expect = 0.0
Identities = 377/378 (99%), Positives = 378/378 (100%)
Frame = +1
Query: 133 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 312
MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG
Sbjct: 1 MADVPNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMG 60
Query: 313 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 492
EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE
Sbjct: 61 EDYKADCPPGNRAPGIDSGLDATEAGDDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKE 120
Query: 493 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 672
LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI
Sbjct: 121 LIDRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 180
Query: 673 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 852
PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF
Sbjct: 181 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKELTLEQAHGYAVENAKDIIACGFDVNKTFIF 240
Query: 853 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 1032
SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ
Sbjct: 241 SDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSSSFPQ 300
Query: 1033 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 1212
IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP
Sbjct: 301 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDP 360
Query: 1213 NSSIFLTDTAKQIKTKVN 1266
NSSIFLTDTAKQIKTKV+
Sbjct: 361 NSSIFLTDTAKQIKTKVS 378
>ref|XP_003356851.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic-like, partial
[Sus scrofa].
Length = 271
Score = 179 bits (453), Expect(2) = 3e-46
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +1
Query: 1258 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRKDYSSGAMLTGEL 1437
+VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRKDYSSGAMLTGEL
Sbjct: 165 QVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRKDYSSGAMLTGEL 224
Query: 1438 KKVLIEVLQPLIAEHQARRKEVTDEVVKE 1524
KKVLIEVLQPLIAEHQARRKEVTDEVVKE
Sbjct: 225 KKVLIEVLQPLIAEHQARRKEVTDEVVKE 253
Score = 25.8 bits (55), Expect(2) = 3e-46
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1527 MTPRKLSYDFK 1559
MTPRKLSYDF+
Sbjct: 255 MTPRKLSYDFE 265
>ref|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
synthetase [Sus scrofa].
Length = 1432
Score = 68.2 bits (165), Expect = 1e-11
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = +1
Query: 175 LELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKADCPPGNRAP 354
L L+N +AAQG++VR LKA+ AAK++ID+AVK LL+LK YK G++YK PP
Sbjct: 749 LVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGSPPAAAVQ 808
Query: 355 GIDS 366
+ S
Sbjct: 809 NVSS 812
Score = 58.9 bits (141), Expect = 8e-09
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = +1
Query: 145 PNGEQGCSSPLELFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYK 324
P+G + + L LF+ +A+QGE+VR LKA A+KD +D+AV+ LL LK YK+ G DYK
Sbjct: 891 PSGPETPEAKL-LFDKVASQGEVVRKLKAEKASKDHVDTAVQELLQLKAQYKSLTGVDYK 949
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Frame = +1
Query: 157 QGCSSPLE---LFNSIAAQGELVRSLKARHAAKDEIDSAVKMLLSLKMSYKAAMGEDYKA 327
+ SS LE L++ +AAQGE+VR LKA A K +++ AV+ LLSLK YK G++Y
Sbjct: 813 ESSSSVLESKSLYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGQEYIP 872
Query: 328 DCPPGNRA 351
PP +++
Sbjct: 873 GQPPSSQS 880
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,947,811
Number of extensions: 967059
Number of successful extensions: 3645
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3643
Number of HSP's successfully gapped: 6
Length of query: 523
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 420
Effective length of database: 8,779,541
Effective search space: 3687407220
Effective search space used: 3687407220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002874
(1570 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 428 e-117
>Sscrofa_Chr07
|| Length = 134764511
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 245 aggatgaaattgattccgcagtaaaaatgttgttatccttgaaaatgagctacaaagctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128691196 aggatgaaattgattccgcagtaaaaatgttgttatccttgaaaatgagctacaaagctg 128691137
Query: 305 cgatgggggaggattacaaggctgactgtcctccagggaaccgggcgccagggattgaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128691136 cgatgggggaggattacaaggctgactgtcctccagggaaccgggcgccagggattgaca 128691077
Query: 365 gtggcctggatgccacagaagcaggagacgattttgtggacccgtggacagtacagacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128691076 gtggcctggatgccacagaagcaggagacgattttgtggacccgtggacagtacagacaa 128691017
Query: 425 gcagtgcaaaaggcatcgactatgacaagctcattg 460
||||||||||||||||||||||||||||||||||||
Sbjct: 128691016 gcagtgcaaaaggcatcgactatgacaagctcattg 128690981
Score = 365 bits (184), Expect = 5e-98
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 690 gtggctgcaggatgtgttcaacgtgcctttagtcatccagatgacggacgacgagaagta 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128687265 gtggctgcaggatgtgttcaacgtgcctttagtcatccagatgacggacgacgagaagta 128687206
Query: 750 cctctggaaggagctgaccctggagcaggcccacggctacgccgtggagaacgccaagga 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128687205 cctctggaaggagctgaccctggagcaggcccacggctacgccgtggagaacgccaagga 128687146
Query: 810 catcatcgcctgcggcttcgacgtcaacaagaccttcatcttctccgaccttgactacat 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128687145 catcatcgcctgcggcttcgacgtcaacaagaccttcatcttctccgaccttgactacat 128687086
Query: 870 gggg 873
||||
Sbjct: 128687085 gggg 128687082
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 67 gttttgtctggacggctgagcaaatctcccagcaccctagccggctgtggccttaggtcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128696395 gttttgtctggacggctgagcaaatctcccagcaccctagccggctgtggccttaggtcc 128696336
Query: 127 tggaaaatggcagatgtgcccaacggcgagcaggggtgcagctccccactggagctgttc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128696335 tggaaaatggcagatgtgcccaacggcgagcaggggtgcagctccccactggagctgttc 128696276
Query: 187 aacagcatagctgctcagggggagctcgtgaggtccctcaaagccagacacgcggcgaag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128696275 aacagcatagctgctcagggggagctcgtgaggtccctcaaagccagacacgcggcgaag 128696216
Query: 247 g 247
|
Sbjct: 128696215 g 128696215
Score = 355 bits (179), Expect = 5e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 1084 caggacccgtacttcaggatgaccagagacgtggcccccaggatcggctaccccaagccc 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128682518 caggacccgtacttcaggatgaccagagacgtggcccccaggatcggctaccccaagccc 128682459
Query: 1144 gccctgctgcactcgaccttcttccctgccctgcagggggcccagaccaaaatgagcgcc 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128682458 gccctgctgcactcgaccttcttccctgccctgcagggggcccagaccaaaatgagcgcc 128682399
Query: 1204 agcgaccccaactcctccatcttcctcacggacacggccaagcagatcaagaccaaggt 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128682398 agcgaccccaactcctccatcttcctcacggacacggccaagcagatcaagaccaaggt 128682340
Score = 309 bits (156), Expect = 2e-81
Identities = 169/172 (98%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 1400 aggattacagcagcggggccatgctcacgggcgagctcaagaaggtgctcatagaggtgc 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128678764 aggattacagcagcggggccatgctcacgggcgagctcaagaaggtgctcatagaggtgc 128678705
Query: 1460 tacagcccctgatcgccgagcaccaggcccggcgcaaggaggtcacggacgaggtggtga 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128678704 tacagcccctgatcgccgagcaccaggcccggcgcaaggaggtcacggacgaggtggtga 128678645
Query: 1520 aagag-tcatgactccccgaaagctgtcctacgacttcaagtaaccctcttt 1570
||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 128678644 aagagttcatgactccccggaagctgtcctacgacttcgagtaaccctcttt 128678593
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1259 aggtcaacaagcacgcgttttcgggaggcagggacaccatcgaggagcaccggcagtttg 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128680044 aggtcaacaagcacgcgttttcgggaggcagggacaccatcgaggagcaccggcagtttg 128679985
Query: 1319 ggggcaactgcgacgtggacgtgtccttcatgtacctgaccttcttcctggaggatgacg 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128679984 ggggcaactgcgacgtggacgtgtccttcatgtacctgaccttcttcctggaggatgacg 128679925
Query: 1379 acaggctcgagcagatcaggaagg 1402
||||||||||||||||||||||||
Sbjct: 128679924 acaggctcgagcagatcaggaagg 128679901
Score = 248 bits (125), Expect = 8e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 567 cagagatatgaatcaggtgctcgatgcctatgaaaacaagaagccgttttatctgtacac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128688189 cagagatatgaatcaggtgctcgatgcctatgaaaacaagaagccgttttatctgtacac 128688130
Query: 627 gggcaggggcccgtcctccgaagcaatgcacgtgggtcacctcatcccgttcatcttcac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128688129 gggcaggggcccgtcctccgaagcaatgcacgtgggtcacctcatcccgttcatcttcac 128688070
Query: 687 caagt 691
|||||
Sbjct: 128688069 caagt 128688065
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 973 gggaagatcagcttccccgccatccaggctgctccctccttcagcagttccttcccgcag 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128682774 gggaagatcagcttccccgccatccaggctgctccctccttcagcagttccttcccgcag 128682715
Query: 1033 atcttccgagaccggacagacatccagtgcctcatcccgtgtgccatcgaccagg 1087
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128682714 atcttccgagaccggacagacatccagtgcctcatcccgtgtgccatcgaccagg 128682660
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 460 gttcggttcggaagcagtaaaattgacaaggagctgatagaccggatagagagagccact 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128689862 gttcggttcggaagcagtaaaattgacaaggagctgatagaccggatagagagagccact 128689803
Query: 520 ggccagaggccacaccgcttcctgcgcaggggcatcttcttctcacacag 569
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128689802 ggccagaggccacaccgcttcctgcgcaggggcatcttcttctcacacag 128689753
Score = 206 bits (104), Expect = 3e-50
Identities = 107/108 (99%)
Strand = Plus / Minus
Query: 872 ggatgagcccgggcttctacaagaatgtggtgaagattcagaagcacgttaccttcaacc 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128684480 ggatgagcccgggcttctacaagaatgtggtgaagattcagaagcacgttaccttcaacc 128684421
Query: 932 aagtgaaaggcatcttcggcttcaccgacagtgactgcattgggaaga 979
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 128684420 aagtgaaaggcatcttcggcttcaccgacagtgactgcattggtaaga 128684373
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1 gtttccacggacgcccaagcagcaacccgtggctgagccggcagtgctgacgggcccggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128702968 gtttccacggacgcccaagcagcaacccgtggctgagccggcagtgctgacgggcccggc 128702909
Query: 61 tgggccg 67
|||||||
Sbjct: 128702908 tgggccg 128702902
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,511,310
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 11
Length of query: 1570
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1549
Effective length of database: 2,808,413,156
Effective search space: 4350231978644
Effective search space used: 4350231978644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)