Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002876
(780 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776669.1| ATP synthase subunit O, mitochondrial precursor... 379 e-105
>ref|NP_776669.1| ATP synthase subunit O, mitochondrial precursor [Bos taurus].
Length = 213
Score = 379 bits (974), Expect = e-105
Identities = 197/212 (92%), Positives = 207/212 (97%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ AVSGLS+QVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MAALAVSGLSQQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRV QILKEPK+AAS++NPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRL++
Sbjct: 61 ELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTN 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
TP VISAFSTMMSVHRGEVPC+VTTAS LDE TLTELKTVLKSFLSKGQ+LKLEVK+DPS
Sbjct: 121 TPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI 682
IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI
Sbjct: 181 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI 212
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,702,467
Number of extensions: 634543
Number of successful extensions: 1986
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 160
Effective length of database: 14,372,574
Effective search space: 2299611840
Effective search space used: 2299611840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002876
(780 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535587.1| PREDICTED: similar to ATP synthase O subunit, m... 387 e-108
Alignment gi|XP_849957.1| PREDICTED: similar to ATP synthase O subunit, m... 375 e-104
Alignment gi|XP_858040.1| PREDICTED: similar to ATP synthase O subunit, m... 339 2e-93
Alignment gi|XP_858000.1| PREDICTED: similar to ATP synthase O subunit, m... 254 6e-68
Alignment gi|XP_857913.1| PREDICTED: similar to ATP synthase O subunit, m... 198 4e-51
>ref|XP_535587.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial
precursor (Oligomycin sensitivity conferral protein)
(OSCP) isoform 1 [Canis familiaris].
Length = 213
Score = 387 bits (993), Expect = e-108
Identities = 198/213 (92%), Positives = 211/213 (99%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ AVSGLSRQVRCFSTSVVRPF+KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFSKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRVAQILKEPK+AASIMNPY+KRSVKVKSL+DMTAKE+FSP+TSNLINLLAENGRL++
Sbjct: 61 ELLRVAQILKEPKMAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLINLLAENGRLNN 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
TPGVISAFSTMMSVHRGEVPC+VTTASPLDEATLTELKTVLKSFLSKGQ+LKLEVKVDPS
Sbjct: 121 TPGVISAFSTMMSVHRGEVPCTVTTASPLDEATLTELKTVLKSFLSKGQVLKLEVKVDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREIF 685
IMGGMIVRIGEKY DMSA+TKIQKLSRAMRE+F
Sbjct: 181 IMGGMIVRIGEKYADMSARTKIQKLSRAMREVF 213
>ref|XP_849957.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial
precursor (Oligomycin sensitivity conferral protein)
(OSCP) [Canis familiaris].
Length = 213
Score = 375 bits (964), Expect = e-104
Identities = 194/213 (91%), Positives = 208/213 (97%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ AVSGLSRQVRCFSTSVVRPF+KLVRPPVQI+GIEGR ATALYSAASKQNKLEQVEK
Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFSKLVRPPVQIHGIEGRDATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRVAQILKEPK+AASIMNPY+KRSVKVKSL+D+TAKE+FSP+TSNLINLLAE GRL++
Sbjct: 61 ELLRVAQILKEPKMAASIMNPYIKRSVKVKSLNDVTAKERFSPITSNLINLLAEKGRLNN 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
TPGVISAFSTMMSVHRGEVPC+VTTASPLDEATLTELKTVLKSFLSKGQ+LKLEVKVDPS
Sbjct: 121 TPGVISAFSTMMSVHRGEVPCTVTTASPLDEATLTELKTVLKSFLSKGQVLKLEVKVDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREIF 685
IMGGMIVRIGEKY DMSA TKIQKLSRAMRE+F
Sbjct: 181 IMGGMIVRIGEKYADMSAGTKIQKLSRAMREVF 213
>ref|XP_858040.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial
precursor (Oligomycin sensitivity conferral protein)
(OSCP) isoform 4 [Canis familiaris].
Length = 219
Score = 339 bits (869), Expect = 2e-93
Identities = 172/186 (92%), Positives = 185/186 (99%)
Frame = +2
Query: 128 VRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPYVKRSV 307
++PPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPK+AASIMNPY+KRSV
Sbjct: 34 LKPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKMAASIMNPYIKRSV 93
Query: 308 KVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTAS 487
KVKSL+DMTAKE+FSP+TSNLINLLAENGRL++TPGVISAFSTMMSVHRGEVPC+VTTAS
Sbjct: 94 KVKSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVISAFSTMMSVHRGEVPCTVTTAS 153
Query: 488 PLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSR 667
PLDEATLTELKTVLKSFLSKGQ+LKLEVKVDPSIMGGMIVRIGEKY DMSA+TKIQKLSR
Sbjct: 154 PLDEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGMIVRIGEKYADMSARTKIQKLSR 213
Query: 668 AMREIF 685
AMRE+F
Sbjct: 214 AMREVF 219
>ref|XP_858000.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial
precursor (Oligomycin sensitivity conferral protein)
(OSCP) isoform 3 [Canis familiaris].
Length = 140
Score = 254 bits (649), Expect = 6e-68
Identities = 128/140 (91%), Positives = 139/140 (99%)
Frame = +2
Query: 266 VAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMS 445
+AASIMNPY+KRSVKVKSL+DMTAKE+FSP+TSNLINLLAENGRL++TPGVISAFSTMMS
Sbjct: 1 MAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVISAFSTMMS 60
Query: 446 VHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKY 625
VHRGEVPC+VTTASPLDEATLTELKTVLKSFLSKGQ+LKLEVKVDPSIMGGMIVRIGEKY
Sbjct: 61 VHRGEVPCTVTTASPLDEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGMIVRIGEKY 120
Query: 626 VDMSAKTKIQKLSRAMREIF 685
DMSA+TKIQKLSRAMRE+F
Sbjct: 121 ADMSARTKIQKLSRAMREVF 140
>ref|XP_857913.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial
precursor (Oligomycin sensitivity conferral protein)
(OSCP) isoform 2 [Canis familiaris].
Length = 112
Score = 198 bits (504), Expect = 4e-51
Identities = 101/109 (92%), Positives = 108/109 (99%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ AVSGLSRQVRCFSTSVVRPF+KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFSKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLI 373
ELLRVAQILKEPK+AASIMNPY+KRSVKVKSL+DMTAKE+FSP+TSNLI
Sbjct: 61 ELLRVAQILKEPKMAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLI 109
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,760,017
Number of extensions: 639176
Number of successful extensions: 2136
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2134
Number of HSP's successfully gapped: 5
Length of query: 260
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 159
Effective length of database: 15,507,568
Effective search space: 2465703312
Effective search space used: 2465703312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002876
(780 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001688.1| ATP synthase subunit O, mitochondrial precursor... 370 e-103
>ref|NP_001688.1| ATP synthase subunit O, mitochondrial precursor [Homo sapiens].
Length = 213
Score = 370 bits (950), Expect = e-103
Identities = 188/212 (88%), Positives = 206/212 (97%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ AVSGLSRQVRCFSTSVVRPFAKLVRPPVQ+YGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRVAQILKEPKVAAS++NPYVKRS+KVKSL+D+TAKE+FSPLT+NLINLLAENGRLS+
Sbjct: 61 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
T GV+SAFSTMMSVHRGEVPC+VT+ASPL+EATL+ELKTVLKSFLS+GQ+LKLE K DPS
Sbjct: 121 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI 682
I+GGMIVRIGEKYVDMS KTKIQKL RAMREI
Sbjct: 181 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREI 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,363,427
Number of extensions: 633047
Number of successful extensions: 1998
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1997
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 160
Effective length of database: 15,000,764
Effective search space: 2400122240
Effective search space used: 2400122240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002876
(780 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_613063.1| ATP synthase subunit O, mitochondrial precursor... 344 5e-95
Alignment gi|XP_001478145.1| PREDICTED: ATP synthase subunit O, mitochond... 344 5e-95
>ref|NP_613063.1| ATP synthase subunit O, mitochondrial precursor [Mus musculus].
Length = 213
Score = 344 bits (882), Expect = 5e-95
Identities = 172/212 (81%), Positives = 199/212 (93%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ A SGLSRQVR FSTSVVRPFAKLVRPPVQ+YGIEGRYATALYSAASK+ KL+QVEK
Sbjct: 1 MAAPAASGLSRQVRSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRV Q+LK+PKV+ +++NPY+KR+VKVKSL+D+T +EKFSPLT+NL+NLLAENGRL +
Sbjct: 61 ELLRVGQLLKDPKVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGN 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
T G+ISAFST+MSVHRGEVPC+VTTASPLD+A L+ELKTVLKSFLS QILKLE+K DPS
Sbjct: 121 TQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI 682
IMGGMIVRIGEKYVDMSAK+KIQKLS+AMRE+
Sbjct: 181 IMGGMIVRIGEKYVDMSAKSKIQKLSKAMREM 212
>ref|XP_001478145.1| PREDICTED: ATP synthase subunit O, mitochondrial-like [Mus
musculus].
Length = 213
Score = 344 bits (882), Expect = 5e-95
Identities = 172/212 (81%), Positives = 199/212 (93%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MA+ A SGLSRQVR FSTSVVRPFAKLVRPPVQ+YGIEGRYATALYSAASK+ KL+QVEK
Sbjct: 1 MAAPAASGLSRQVRSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRV Q+LK+PKV+ +++NPY+KR+VKVKSL+D+T +EKFSPLT+NL+NLLAENGRL +
Sbjct: 61 ELLRVGQLLKDPKVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGN 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
T G+ISAFST+MSVHRGEVPC+VTTASPLD+A L+ELKTVLKSFLS QILKLE+K DPS
Sbjct: 121 TQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI 682
IMGGMIVRIGEKYVDMSAK+KIQKLS+AMRE+
Sbjct: 181 IMGGMIVRIGEKYVDMSAKSKIQKLSKAMREM 212
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,385,420
Number of extensions: 539986
Number of successful extensions: 1671
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 161
Effective length of database: 12,643,995
Effective search space: 2035683195
Effective search space used: 2035683195
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002876
(780 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038071.1| ATP synthase subunit O, mitochondrial precur... 403 e-113
Alignment gi|XP_003360717.1| PREDICTED: ATP synthase subunit O, mitochond... 128 4e-30
>ref|NP_001038071.1| ATP synthase subunit O, mitochondrial precursor [Sus scrofa].
Length = 213
Score = 403 bits (1035), Expect = e-113
Identities = 213/213 (100%), Positives = 213/213 (100%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 406
ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS
Sbjct: 61 ELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSS 120
Query: 407 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 586
TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS
Sbjct: 121 TPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPS 180
Query: 587 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREIF 685
IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREIF
Sbjct: 181 IMGGMIVRIGEKYVDMSAKTKIQKLSRAMREIF 213
>ref|XP_003360717.1| PREDICTED: ATP synthase subunit O, mitochondrial-like, partial [Sus
scrofa].
Length = 66
Score = 128 bits (321), Expect = 4e-30
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +2
Query: 47 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 226
MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MASQAVSGLSRQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 227 ELLRVA 244
ELLRVA
Sbjct: 61 ELLRVA 66
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,319,924
Number of extensions: 430170
Number of successful extensions: 1176
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1175
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,928,923
Effective search space: 1455414449
Effective search space used: 1455414449
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002876
(780 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 426 e-117
Sscrofa_Chr13 361 4e-97
Sscrofa_Chr07 307 5e-81
Sscrofa_Chr14 262 3e-67
Sscrofa_Chr10 250 1e-63
gb|GL892599.2| Sus scrofa unplaced genomic scaffold ChrUScaf485 159 3e-36
Sscrofa_Chr01 90 2e-15
>Sscrofa_Chr17
|| Length = 69701581
Score = 426 bits (215), Expect = e-117
Identities = 520/620 (83%), Gaps = 25/620 (4%)
Strand = Plus / Plus
Query: 131 aggccacctgttcagatatatggtatcgaaggtcgctatgccactgctctttattctgct 190
|||||||||||||| |||| |||||||||||||| ||||| |||||||||||| ||||||
Sbjct: 42098313 aggccacctgttcacatatgtggtatcgaaggtcactatgtcactgctctttaatctgct 42098372
Query: 191 gcatctaaacagaataaactggaacaagtggaaaaagaattgttgagagtagcacaaatc 250
| ||||| |||||||||||||||||||| | ||| ||||||||| ||||||||||||||
Sbjct: 42098373 gtttctaatcagaataaactggaacaagtagcaaaggaattgttgggagtagcacaaatc 42098432
Query: 251 ttgaaggaacccaaagtggctgcttctattatgaatccctatgtaaagcgttccgtcaaa 310
||||||||| || ||| |||| |||||||||||||||||||||||| || | | |||
Sbjct: 42098433 ttgaaggaa---aacttggttgctcctattatgaatccctatgtaaagcattgcattaaa 42098489
Query: 311 gtcaagagcctgagcgacatgacagcaaaggagaagttttctcccctgacgtccaacctg 370
|| || ||||| ||||||| |||||| |||| |||||||||||| || ||||||||
Sbjct: 42098490 gtgaaaagcctatatgacatgatagcaaaagagaggttttctcccctcacagccaacctg 42098549
Query: 371 atcaatttgcttgctgaaaacggtcgcttgagcagtacccctggcgtcatttctgccttt 430
|||||||||||||||||||| ||||||||||||| || |||||| ||||||||||| |||
Sbjct: 42098550 atcaatttgcttgctgaaaatggtcgcttgagcaataaccctggagtcatttctgctttt 42098609
Query: 431 tctaccatgatgagtgtccaccgcggagaagtaccttgttccgtcaccactgcatctcct 490
|||||||||||| ||||||| |||||||||||||| | || | |||| ||||||||
Sbjct: 42098610 tctaccatgatgtctgtccacactggagaagtaccttg--cagttatcactacatctcct 42098667
Query: 491 ttagatgaagccactcttacagagttaaaaacagtcctgaagagcttcctaagtaaaggc 550
|| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 42098668 ttcgatgaagccactcttactggattaaaaacagtcctgaagagcttcctaagtaaaggg 42098727
Query: 551 caaatattgaagttggaagtgaaggttgatccatcaatcatgggcggaatgattgtccga 610
||| || |||||||| ||| ||||| | ||||| || | ||||||||||||
Sbjct: 42098728 caagta------ttggaagttaagattgatgcgacaatcgtgagtagaatgattgtccat 42098781
Query: 611 attggagagaaatatgttgatatgtcagcaaaaaccaagattcagaagctgagcagagcc 670
||||||||||| ||||||| | |||||||||||||||| |||||||||
Sbjct: 42098782 attggagagaa--------atatgtctgtgaaaaccaagattcaga-----agcagagcc 42098828
Query: 671 atgcgggagattttttaaaaagtgttgattttctgtccatgaaaattcttaaacttggag 730
||| |||| |||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct: 42098829 atgagggaaatttgct-gaaagtgttgattttctctcagtgaaaattcttaaacttggag 42098887
Query: 731 caacaataaaatgcttcctg 750
|||||||||||| |||||||
Sbjct: 42098888 caacaataaaatacttcctg 42098907
>Sscrofa_Chr13
|| Length = 218635234
Score = 361 bits (182), Expect = 4e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 573 aggttgatccatcaatcatgggcggaatgattgtccgaattggagagaaatatgttgata 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207336474 aggttgatccatcaatcatgggcggaatgattgtccgaattggagagaaatatgttgata 207336415
Query: 633 tgtcagcaaaaaccaagattcagaagctgagcagagccatgcgggagattttttaaaaag 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207336414 tgtcagcaaaaaccaagattcagaagctgagcagagccatgcgggagattttttaaaaag 207336355
Query: 693 tgttgattttctgtccatgaaaattcttaaacttggagcaacaataaaatgcttcctgaa 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207336354 tgttgattttctgtccatgaaaattcttaaacttggagcaacaataaaatgcttcctgaa 207336295
Query: 753 ca 754
||
Sbjct: 207336294 ca 207336293
Score = 258 bits (130), Expect = 4e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 245 caaatcttgaaggaacccaaagtggctgcttctattatgaatccctatgtaaagcgttcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207340144 caaatcttgaaggaacccaaagtggctgcttctattatgaatccctatgtaaagcgttcc 207340085
Query: 305 gtcaaagtcaagagcctgagcgacatgacagcaaaggagaagttttctcccctgacgtcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207340084 gtcaaagtcaagagcctgagcgacatgacagcaaaggagaagttttctcccctgacgtcc 207340025
Query: 365 aacctgatca 374
||||||||||
Sbjct: 207340024 aacctgatca 207340015
Score = 224 bits (113), Expect = 6e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 375 atttgcttgctgaaaacggtcgcttgagcagtacccctggcgtcatttctgccttttcta 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207339346 atttgcttgctgaaaacggtcgcttgagcagtacccctggcgtcatttctgccttttcta 207339287
Query: 435 ccatgatgagtgtccaccgcggagaagtaccttgttccgtcaccactgcatct 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207339286 ccatgatgagtgtccaccgcggagaagtaccttgttccgtcaccactgcatct 207339234
Score = 222 bits (112), Expect = 2e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 133 gccacctgttcagatatatggtatcgaaggtcgctatgccactgctctttattctgctgc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207343745 gccacctgttcagatatatggtatcgaaggtcgctatgccactgctctttattctgctgc 207343686
Query: 193 atctaaacagaataaactggaacaagtggaaaaagaattgttgagagtagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207343685 atctaaacagaataaactggaacaagtggaaaaagaattgttgagagtagca 207343634
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 488 cctttagatgaagccactcttacagagttaaaaacagtcctgaagagcttcctaagtaaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207336864 cctttagatgaagccactcttacagagttaaaaacagtcctgaagagcttcctaagtaaa 207336805
Query: 548 ggccaaatattgaagttggaagtgaaggt 576
|||||||||||||||||||||||||||||
Sbjct: 207336804 ggccaaatattgaagttggaagtgaaggt 207336776
Score = 159 bits (80), Expect = 3e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 2 tctctctcgccaaggagggtttgacctacagcctcccaggagaagatggcctcccaagca 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207346588 tctctctcgccaagtagggtttgacctacagcctcccaggagaagatggcctcccaagca 207346529
Query: 62 gtgtccgggctttcccggcaggtg 85
||||||||||||||||||||||||
Sbjct: 207346528 gtgtccgggctttcccggcaggtg 207346505
Score = 105 bits (53), Expect = 4e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 81 aggtgcgatgcttcagtacatctgtggtcaggccatttgccaagcttgtgagg 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207345091 aggtgcgatgcttcagtacatctgtggtcaggccatttgccaagcttgtgagg 207345039
>Sscrofa_Chr07
|| Length = 134764511
Score = 307 bits (155), Expect = 5e-81
Identities = 352/415 (84%), Gaps = 7/415 (1%)
Strand = Plus / Minus
Query: 87 gatgcttcagtacatctgtggtcaggccatttgccaagcttgtgaggccacctgttcaga 146
|||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 60866576 gatgcttcagtatatctgtggtcaggctgtttgccaagcttgtgaagctacctgttcaga 60866517
Query: 147 tatatggtatcgaaggtcgctatgccactgctctttattctgctgcatctaaacagaata 206
||| |||||| ||||||| |||| ||||| |||| || ||| |||||||||||||||||
Sbjct: 60866516 tatgtggtattgaaggtcactattccacttctct--atcctgttgcatctaaacagaata 60866459
Query: 207 aactggaacaagtggaaaaagaattgttgagagtagcacaaatcttgaaggaacccaaag 266
||||| | |||| ||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 60866458 aactgtagcaagcagaaaaagaactgttgagagtagcacaaaccttgaaggaagcccaaa 60866399
Query: 267 tggctgcttctattatgaatccctatgtaaagcgttccgtcaaagtcaagagcctgagcg 326
|||||||||||||||| |||| |||||||||| | || || ||||| || ||||| | |
Sbjct: 60866398 tggctgcttctattataaatctctatgtaaagtgctcggttaaagtgaaaagcctaaatg 60866339
Query: 327 acatgacagcaaaggagaagttttctcccctgacgtccaacctgatcaatttgcttgctg 386
||||||||||||| | |||||||||| || | | |||||||||| ||||||||||||
Sbjct: 60866338 acatgacagcaaaagggaagttttcttccttcatgtccaacctg----atttgcttgctg 60866283
Query: 387 aaaacggtcgcttgagcagtacccctggcgtcatttctgccttttctaccatgatgagtg 446
|||| |||| ||||| | || |||||| |||||||||||||||||||||||| |||||
Sbjct: 60866282 aaaatggtcacttgaataata-ccctggagtcatttctgccttttctaccatgccgagtg 60866224
Query: 447 tccaccgcggagaagtaccttgttccgtcaccactgcatctcctttagatgaagc 501
||||||| ||||| ||| || | || ||||||||||||||||||||| ||||
Sbjct: 60866223 tccaccgtagagaaatactttacacagttaccactgcatctcctttagataaagc 60866169
Score = 163 bits (82), Expect = 2e-37
Identities = 214/254 (84%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 492 tagatgaagccactcttacagagttaaaaacagtcctgaagagcttcctaagtaaaggcc 551
||||||||||||||||||| || | ||||||||||||| ||||||||||| ||||| |||
Sbjct: 60866010 tagatgaagccactcttactgaatgaaaaacagtcctgtagagcttcctaggtaaaagcc 60865951
Query: 552 aaatattgaagttggaagtgaaggttgatccatcaatcatgggcggaatgattgtccgaa 611
|| ||||||| |||||||| || ||||| ||| | ||||| ||||||| ||||| |
Sbjct: 60865950 aagtattgaaattggaagttcagactgatctgtcagttatgggtggaatgactgtccata 60865891
Query: 612 ttggagagaaatatgttgatatgtcagcaaaaaccaagattcagaagctgagcagagcca 671
||||||||||||||||||||| | ||||| |||||||||||||||||| | || |
Sbjct: 60865890 cgggagagaaatatgttgatatgactacaaaagccaagattcagaagctga-atgggcaa 60865832
Query: 672 tgcgggagattttttaaaaagtgttgattttctgtccatgaaaattcttaaacttggagc 731
||||||||||||| | ||||||||||||||||| || ||| ||||||||||| ||| ||
Sbjct: 60865831 tgcgggagattttct-aaaagtgttgattttctatcagtgagaattcttaaacctgg-gc 60865774
Query: 732 aacaataaaatgct 745
|| |||||||||||
Sbjct: 60865773 aaaaataaaatgct 60865760
>Sscrofa_Chr14
|| Length = 153851969
Score = 262 bits (132), Expect = 3e-67
Identities = 244/280 (87%), Gaps = 1/280 (0%)
Strand = Plus / Plus
Query: 475 caccactgcatctcctttagatgaagccactcttacagagttaaaaacagtcctgaagag 534
|||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||
Sbjct: 73732765 caccactgcatctcctttagataaagccactcttactgaattaaaaacagtcctagagaa 73732824
Query: 535 cttcctaagtaaaggccaaatattgaagttggaagtgaaggttgatccatcaatcatggg 594
|||||||| |||||||||| |||||| |||||| ||||| ||| |||||||||| |
Sbjct: 73732825 cttcctaaataaaggccaagaattgaaattggaaatgaagattggtccatcaatcccatg 73732884
Query: 595 cggaatgattgtccgaattggagagaaatatgttgatatgtcagcaaaaaccaagattca 654
|||||||||| || ||||||| |||||||||||||||| || ||| |||||||||
Sbjct: 73732885 tggaatgattgcccattttggagaaaaatatgttgatatgtattcagaaaacaagattca 73732944
Query: 655 gaagctgagcagagccatgcgggagattttttaaaaagtgttgattttctgtccatgaaa 714
||||||||||||||| ||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 73732945 gaagctgagcagagcaatgtaggagattttct-aaaagtgttgattttctgtcagtgaaa 73733003
Query: 715 attcttaaacttggagcaacaataaaatgcttcctgaaca 754
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 73733004 attattaaacttggagcaacaataaaatgcttcctgaaca 73733043
Score = 262 bits (132), Expect = 3e-67
Identities = 244/280 (87%), Gaps = 1/280 (0%)
Strand = Plus / Plus
Query: 475 caccactgcatctcctttagatgaagccactcttacagagttaaaaacagtcctgaagag 534
|||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||
Sbjct: 73890156 caccactgcatctcctttagataaagccactcttactgaattaaaaacagtcctagagaa 73890215
Query: 535 cttcctaagtaaaggccaaatattgaagttggaagtgaaggttgatccatcaatcatggg 594
|||||||| |||||||||| |||||| |||||| ||||| ||| |||||||||| |
Sbjct: 73890216 cttcctaaataaaggccaagaattgaaattggaaatgaagattggtccatcaatcccatg 73890275
Query: 595 cggaatgattgtccgaattggagagaaatatgttgatatgtcagcaaaaaccaagattca 654
|||||||||| || ||||||| |||||||||||||||| || ||| |||||||||
Sbjct: 73890276 tggaatgattgcccattttggagaaaaatatgttgatatgtattcagaaaacaagattca 73890335
Query: 655 gaagctgagcagagccatgcgggagattttttaaaaagtgttgattttctgtccatgaaa 714
||||||||||||||| ||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 73890336 gaagctgagcagagcaatgtaggagattttct-aaaagtgttgattttctgtcagtgaaa 73890394
Query: 715 attcttaaacttggagcaacaataaaatgcttcctgaaca 754
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 73890395 attattaaacttggagcaacaataaaatgcttcctgaaca 73890434
>Sscrofa_Chr10
|| Length = 79102373
Score = 250 bits (126), Expect = 1e-63
Identities = 416/507 (82%), Gaps = 8/507 (1%)
Strand = Plus / Plus
Query: 248 atcttgaaggaacccaaagtggctgcttctattatgaatccctatgtaaagcgttccgtc 307
||||||||||||||| || ||||| ||| | |||||||||| | ||||||| |||| ||
Sbjct: 55894953 atcttgaaggaaccccaaatggcttcttgtgttatgaatccttg-gtaaagcattccatc 55895011
Query: 308 aaagtcaagagcctgagcgacatgacagcaaaggagaagttttctcccctgacgtccaac 367
||||| || || | ||| ||| || ||| | |||| |||||||||||| || ||||||
Sbjct: 55895012 aaagtgaaaggcttaagcagcataactgcagaagagaggttttctcccctcacatccaac 55895071
Query: 368 ctgatcaatttgcttgctgaaaacggtcgcttgagcagtacccctggcgtcatttctgcc 427
| ||||||||||||||||||||||| | |||||| |||||||| ||||| |||||
Sbjct: 55895072 acaaccaatttgcttgctgaaaacggtcacatgagcaacacccctggagtcatgcctgcc 55895131
Query: 428 ttttctaccatgatgagtgtccaccgcggagaagtaccttgttccgtcaccactgcatct 487
||| ||||| | ||||||||||| |||||||||||||| | || ||||||||||||
Sbjct: 55895132 tttcctacc---gtaagtgtccaccgtggagaagtaccttgcacagttaccactgcatct 55895188
Query: 488 cctttagatgaagccactcttacagagttaaaaacagtcctgaagagcttcctaagtaaa 547
||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 55895189 cctttagatgaagccactcttaccaaattaaaaatggtcctgaagagcttcctaagtaaa 55895248
Query: 548 ggccaaatattgaagttggaagtgaaggttgatccatcaatcatgggcggaatgattgtc 607
| |||| ||||| || ||||| ||| ||||||||||| ||||||| || ||||| |||
Sbjct: 55895249 gaccaaggcttgaaatt-gaagttaagattgatccatcagtcatgggtgggatgatggtc 55895307
Query: 608 cgaattggagagaaatatgttgatatgtcagcaaaaaccaagattcagaagctgagcaga 667
| | |||||||||||| || | |||||| | |||| ||||||| |||||||||||
Sbjct: 55895308 cctactggagagaaatacgtgggtatgtctgtaaaacacaagatttggaagctgagcaag 55895367
Query: 668 gccatgcgggagattttttaaaaagtgttgattttctgtccatgaaaattcttaaacttg 727
|| |||| | | ||||| | ||| ||||||||| |||||||||||||||| || ||||||
Sbjct: 55895368 gcaatgcagaaaattttat-aaatgtgttgattctctgtccatgaaaattatttaacttg 55895426
Query: 728 gagcaacaataaaatgcttcctgaaca 754
|||||| | | |||||||||||||||
Sbjct: 55895427 gagcaata--agaatgcttcctgaaca 55895451
Score = 244 bits (123), Expect = 6e-62
Identities = 186/207 (89%)
Strand = Plus / Plus
Query: 82 ggtgcgatgcttcagtacatctgtggtcaggccatttgccaagcttgtgaggccacctgt 141
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55894696 ggtgcaatgcttcagtacatctgtggtcaggccatttgccaagcttgtgaggccacctgt 55894755
Query: 142 tcagatatatggtatcgaaggtcgctatgccactgctctttattctgctgcatctaaaca 201
|||| | |||||||| ||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 55894756 tcagctgtatggtattaaaggttgctatgccactgctctttattatgctgcatctgaaca 55894815
Query: 202 gaataaactggaacaagtggaaaaagaattgttgagagtagcacaaatcttgaaggaacc 261
|||||||| ||| ||||| ||||| ||||||||||| | | | |||||||||||||||||
Sbjct: 55894816 gaataaaccggagcaagtagaaaaggaattgttgagggaaccccaaatcttgaaggaacc 55894875
Query: 262 caaagtggctgcttctattatgaatcc 288
| || ||||| ||| | ||||||||||
Sbjct: 55894876 ccaaatggcttcttgtgttatgaatcc 55894902
>gb|GL892599.2| Sus scrofa unplaced genomic scaffold ChrUScaf485
Length = 32933
Score = 159 bits (80), Expect = 3e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 2 tctctctcgccaaggagggtttgacctacagcctcccaggagaagatggcctcccaagca 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 tctctctcgccaagtagggtttgacctacagcctcccaggagaagatggcctcccaagca 1906
Query: 62 gtgtccgggctttcccggcaggtg 85
||||||||||||||||||||||||
Sbjct: 1905 gtgtccgggctttcccggcaggtg 1882
>Sscrofa_Chr01
|| Length = 315321322
Score = 89.7 bits (45), Expect = 2e-15
Identities = 210/262 (80%), Gaps = 6/262 (2%)
Strand = Plus / Minus
Query: 326 gacatgacagcaaaggagaagttttctcccctgacgtccaacctgatcaatttgcttgct 385
|||||||||||||| ||| |||| |||||| | |||||| ||| ||||| ||||||
Sbjct: 198327946 gacatgacagcaaa--agacgtttcttcccctcatatccaactggatgaattttcttgct 198327889
Query: 386 gaaaacggtcgcttgagcagtacccctggcgtcatttctgccttttctaccatgatgagt 445
||| | |||| ||||| || ||||| ||| |||||||||||| ||| ||||||| |||||
Sbjct: 198327888 gaatatggtcacttgaacaatacccttggagtcatttctgccatttttaccatggtgagt 198327829
Query: 446 gtccaccgcggagaagtaccttgttccgtcaccactgcatctcctttagatgaagccact 505
| ||| | ||||||||||||| || |||| ||||||||||||| ||| |||||
Sbjct: 198327828 gcacactgtggagaagtaccttacatagttaccattgcatctccttta---gaaaccact 198327772
Query: 506 cttacagagttaaaaacag-tcctgaagagcttcctaagtaaaggccaaatattgaagtt 564
||||| || ||||||| | | || |||| ||||||| |||||||||| ||||||| |
Sbjct: 198327771 cttactgaattaaaaaatgatactaaagaacttcctagataaaggccaagtattgaaact 198327712
Query: 565 ggaagtgaaggttgatccatca 586
|||||| ||| |||||||||||
Sbjct: 198327711 ggaagttaagattgatccatca 198327690
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,442,422
Number of extensions: 700
Number of successful extensions: 700
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 18
Length of query: 780
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 759
Effective length of database: 2,808,413,156
Effective search space: 2131585585404
Effective search space used: 2131585585404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)