Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002883
(1138 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069169.2| dnaJ homolog subfamily C member 22 [Bos taur... 382 e-106
>ref|NP_001069169.2| dnaJ homolog subfamily C member 22 [Bos taurus].
Length = 347
Score = 382 bits (980), Expect = e-106
Identities = 200/296 (67%), Positives = 210/296 (70%)
Frame = +2
Query: 233 MAKGLLMTYALWAVGGPAGLHHLYLGRDSHAXXXXXXXXXXXXXXXXEFWKLPSFVAQAN 412
MAKGLLMTY LWAVGGPAGLHHLYLGRDSHA EFW LPSFVAQAN
Sbjct: 1 MAKGLLMTYTLWAVGGPAGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWMLPSFVAQAN 60
Query: 413 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIXXXXXXXXXXXXX 592
RAQ QRQ SGRGTPPLS IRF AQMIVG+YFGLVALISLSFMASFYI
Sbjct: 61 RAQEQRQGSGRGTPPLSLIRFVAQMIVGMYFGLVALISLSFMASFYIVGLPLAVGLGVLL 120
Query: 593 XXXXXNQTSDFKHTLGVAFLISPIFYGRXXXXXXXXXXXXXXXQKHRRYKTSTGSETLSV 772
NQTSD K+TLG AFL SPIFYGR QKHRRYK S GSETLSV
Sbjct: 121 VAAVGNQTSDLKNTLGAAFLTSPIFYGRPIAILPISLAASITAQKHRRYKPSVGSETLSV 180
Query: 773 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETXXXXXXXXXXXXXXGHLMESVLLLPY 952
RLYRLGLAYLAFTGPL +S LC+TA TLSYVA+T G L+ESVLLLP+
Sbjct: 181 RLYRLGLAYLAFTGPLVHSVLCHTAVTLSYVADTLGSFLSWFSFFPLLGRLLESVLLLPF 240
Query: 953 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIHSQ 1120
R W LLVGD+G SS YFQEWEKLYEFV SFQDEKRQLA QV GL+EGATNEEIH +
Sbjct: 241 RAWKLLVGDHGISSSYFQEWEKLYEFVHSFQDEKRQLALQVFGLSEGATNEEIHGR 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,822,058
Number of extensions: 1384511
Number of successful extensions: 5702
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5679
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002883
(1138 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543683.2| PREDICTED: similar to RIKEN cDNA 2810451A06 [Ca... 389 e-108
>ref|XP_543683.2| PREDICTED: similar to RIKEN cDNA 2810451A06 [Canis familiaris].
Length = 678
Score = 389 bits (998), Expect = e-108
Identities = 205/297 (69%), Positives = 213/297 (71%)
Frame = +2
Query: 230 RMAKGLLMTYALWAVGGPAGLHHLYLGRDSHAXXXXXXXXXXXXXXXXEFWKLPSFVAQA 409
RMAKGLL+TYALWAVGGPAGLHHLYLGRDSHA EFWKLPSFVAQA
Sbjct: 339 RMAKGLLVTYALWAVGGPAGLHHLYLGRDSHALLWMLTLGGGGVGWLWEFWKLPSFVAQA 398
Query: 410 NRAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIXXXXXXXXXXXX 589
NR QGQRQSSG TPP S IRF AQMIVGIYFGLVALISLSFMA+FYI
Sbjct: 399 NRTQGQRQSSGGRTPPPSLIRFVAQMIVGIYFGLVALISLSFMANFYIVGLPLAVGLGVL 458
Query: 590 XXXXXXNQTSDFKHTLGVAFLISPIFYGRXXXXXXXXXXXXXXXQKHRRYKTSTGSETLS 769
NQTSDFK+TLG AFL SPIFYGR QKHRRYK S GSE+LS
Sbjct: 459 LVAAVGNQTSDFKNTLGAAFLTSPIFYGRPIAILPISLAASITAQKHRRYKASVGSESLS 518
Query: 770 VRLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETXXXXXXXXXXXXXXGHLMESVLLLP 949
VRLYRLGLAYLAFTGPLAYS CNTA TLSYVAET G L ESVLLLP
Sbjct: 519 VRLYRLGLAYLAFTGPLAYSVFCNTAATLSYVAETLGSFLSWFSFFPLVGRLTESVLLLP 578
Query: 950 YRVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIHSQ 1120
YR+W LLVGD GFSS YFQEWEKLYEFV SFQDEKRQLAYQVL L+EGAT+EEIH +
Sbjct: 579 YRIWRLLVGDPGFSSSYFQEWEKLYEFVSSFQDEKRQLAYQVLNLSEGATDEEIHGR 635
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,706,004
Number of extensions: 1425576
Number of successful extensions: 5909
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5880
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002883
(1138 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079178.2| dnaJ homolog subfamily C member 22 [Homo sapien... 375 e-104
>ref|NP_079178.2| dnaJ homolog subfamily C member 22 [Homo sapiens].
Length = 341
Score = 375 bits (963), Expect = e-104
Identities = 199/294 (67%), Positives = 209/294 (71%)
Frame = +2
Query: 233 MAKGLLMTYALWAVGGPAGLHHLYLGRDSHAXXXXXXXXXXXXXXXXEFWKLPSFVAQAN 412
MAKGLL+TYALWAVGGPAGLHHLYLGRDSHA EFWKLPSFVAQAN
Sbjct: 1 MAKGLLVTYALWAVGGPAGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWKLPSFVAQAN 60
Query: 413 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIXXXXXXXXXXXXX 592
RAQGQRQS TPPLSPIRFAAQ+IVGIYFGLVALISLS M +FYI
Sbjct: 61 RAQGQRQSPRGVTPPLSPIRFAAQVIVGIYFGLVALISLSSMVNFYIVALPLAVGLGVLL 120
Query: 593 XXXXXNQTSDFKHTLGVAFLISPIFYGRXXXXXXXXXXXXXXXQKHRRYKTSTGSETLSV 772
NQTSDFK+TLG AFL SPIFYGR Q+HRRYK SE LSV
Sbjct: 121 VAAVGNQTSDFKNTLGSAFLTSPIFYGRPIAILPISVAASITAQRHRRYKALVASEPLSV 180
Query: 773 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETXXXXXXXXXXXXXXGHLMESVLLLPY 952
RLYRLGLAYLAFTGPLAYSALCNTA TLSYVAET G LME VLLLPY
Sbjct: 181 RLYRLGLAYLAFTGPLAYSALCNTAATLSYVAETFGSFLNWFSFFPLLGRLMEFVLLLPY 240
Query: 953 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH 1114
R+W LL+G+ GF+S FQEW KLYEFV SFQDEKRQLAYQVLGL+EGATNEEIH
Sbjct: 241 RIWRLLMGETGFNSSCFQEWAKLYEFVHSFQDEKRQLAYQVLGLSEGATNEEIH 294
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,771,124
Number of extensions: 1391281
Number of successful extensions: 5824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5790
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002883
(1138 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_789805.1| dnaJ homolog subfamily C member 22 [Mus musculu... 345 5e-95
>ref|NP_789805.1| dnaJ homolog subfamily C member 22 [Mus musculus].
Length = 339
Score = 345 bits (884), Expect = 5e-95
Identities = 180/294 (61%), Positives = 200/294 (68%)
Frame = +2
Query: 233 MAKGLLMTYALWAVGGPAGLHHLYLGRDSHAXXXXXXXXXXXXXXXXEFWKLPSFVAQAN 412
MAKGLLMTY LWA+GGP GLHHLYLGRDSHA EFWKLPSFVAQAN
Sbjct: 1 MAKGLLMTYVLWALGGPVGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWKLPSFVAQAN 60
Query: 413 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIXXXXXXXXXXXXX 592
R Q +Q PPLS +RFA+Q++VG+YFGLVAL+SLS M +FYI
Sbjct: 61 RVQSWKQRPEEERPPLSLLRFASQIVVGVYFGLVALVSLSSMDNFYIVGLPLAVGLGVLL 120
Query: 593 XXXXXNQTSDFKHTLGVAFLISPIFYGRXXXXXXXXXXXXXXXQKHRRYKTSTGSETLSV 772
NQTSDFK+TLG AFL SP+FYGR QKHRRYK S GSETLSV
Sbjct: 121 VAAVGNQTSDFKNTLGAAFLTSPVFYGRPIAILPISLAASITAQKHRRYKASAGSETLSV 180
Query: 773 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETXXXXXXXXXXXXXXGHLMESVLLLPY 952
RLYR+GLAYLAFTGPLAYS + NTA T++YVAET G L+ESVLLLP
Sbjct: 181 RLYRVGLAYLAFTGPLAYSTMYNTAATINYVAETLGSFLSWFSFFPLLGRLVESVLLLPC 240
Query: 953 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH 1114
R+W LLVG GF+S FQEWEKLYEFV SFQDEK QLA+QVLG+ EGATNEEIH
Sbjct: 241 RIWWLLVGGPGFNSSRFQEWEKLYEFVDSFQDEKLQLAHQVLGVPEGATNEEIH 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,537,166
Number of extensions: 1151343
Number of successful extensions: 4689
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4650
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002883
(1138 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126162.2| PREDICTED: dnaJ homolog subfamily C member 2... 442 e-124
Alignment gi|XP_003355426.1| PREDICTED: dnaJ homolog subfamily C member 2... 442 e-124
>ref|XP_003126162.2| PREDICTED: dnaJ homolog subfamily C member 22-like [Sus scrofa].
Length = 341
Score = 442 bits (1137), Expect = e-124
Identities = 231/294 (78%), Positives = 231/294 (78%)
Frame = +2
Query: 233 MAKGLLMTYALWAVGGPAGLHHLYLGRDSHAXXXXXXXXXXXXXXXXEFWKLPSFVAQAN 412
MAKGLLMTYALWAVGGPAGLHHLYLGRDSHA EFWKLPSFVAQAN
Sbjct: 1 MAKGLLMTYALWAVGGPAGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWKLPSFVAQAN 60
Query: 413 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIXXXXXXXXXXXXX 592
RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYI
Sbjct: 61 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIVGLPLAVGLGVLL 120
Query: 593 XXXXXNQTSDFKHTLGVAFLISPIFYGRXXXXXXXXXXXXXXXQKHRRYKTSTGSETLSV 772
NQTSDFKHTLGVAFLISPIFYGR QKHRRYKTSTGSETLSV
Sbjct: 121 VAAVGNQTSDFKHTLGVAFLISPIFYGRPIAILPISLAASITAQKHRRYKTSTGSETLSV 180
Query: 773 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETXXXXXXXXXXXXXXGHLMESVLLLPY 952
RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAET GHLMESVLLLPY
Sbjct: 181 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETLGSFLSWFSFFPLLGHLMESVLLLPY 240
Query: 953 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH 1114
RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH
Sbjct: 241 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH 294
>ref|XP_003355426.1| PREDICTED: dnaJ homolog subfamily C member 22-like [Sus scrofa].
Length = 351
Score = 442 bits (1136), Expect = e-124
Identities = 230/294 (78%), Positives = 231/294 (78%)
Frame = +2
Query: 233 MAKGLLMTYALWAVGGPAGLHHLYLGRDSHAXXXXXXXXXXXXXXXXEFWKLPSFVAQAN 412
MAKGLLMTYALWA+GGPAGLHHLYLGRDSHA EFWKLPSFVAQAN
Sbjct: 1 MAKGLLMTYALWAIGGPAGLHHLYLGRDSHALLWMLTLGGGGLGWLWEFWKLPSFVAQAN 60
Query: 413 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIXXXXXXXXXXXXX 592
RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYI
Sbjct: 61 RAQGQRQSSGRGTPPLSPIRFAAQMIVGIYFGLVALISLSFMASFYIVGLPLAVGLGVLL 120
Query: 593 XXXXXNQTSDFKHTLGVAFLISPIFYGRXXXXXXXXXXXXXXXQKHRRYKTSTGSETLSV 772
NQTSDFKHTLGVAFLISPIFYGR QKHRRYKTSTGSETLSV
Sbjct: 121 VAAVGNQTSDFKHTLGVAFLISPIFYGRPIAILPISLAASITAQKHRRYKTSTGSETLSV 180
Query: 773 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETXXXXXXXXXXXXXXGHLMESVLLLPY 952
RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAET GHLMESVLLLPY
Sbjct: 181 RLYRLGLAYLAFTGPLAYSALCNTATTLSYVAETLGSFLSWFSFFPLLGHLMESVLLLPY 240
Query: 953 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH 1114
RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH
Sbjct: 241 RVWSLLVGDYGFSSGYFQEWEKLYEFVQSFQDEKRQLAYQVLGLAEGATNEEIH 294
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,977,260
Number of extensions: 895009
Number of successful extensions: 3760
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3732
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002883
(1138 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1905 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1905 bits (961), Expect = 0.0
Identities = 961/961 (100%)
Strand = Plus / Plus
Query: 114 aggtccaaggataactttggggccatgactgccatgattctcacagtggatcccggattt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15729832 aggtccaaggataactttggggccatgactgccatgattctcacagtggatcccggattt 15729891
Query: 174 ctgcattccaagcaatggcaggtgccactggacttgttctgagaactttttcctaaagga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15729892 ctgcattccaagcaatggcaggtgccactggacttgttctgagaactttttcctaaagga 15729951
Query: 234 tggccaaggggctcctgatgacctatgccctttgggctgtagggggccctgctgggctcc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15729952 tggccaaggggctcctgatgacctatgccctttgggctgtagggggccctgctgggctcc 15730011
Query: 294 accacctgtacctggggcgggacagccatgcactgctctggatgcttaccctgggagggg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730012 accacctgtacctggggcgggacagccatgcactgctctggatgcttaccctgggagggg 15730071
Query: 354 gtgggctaggctggctctgggaattctggaagctcccaagctttgtagcgcaggccaaca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730072 gtgggctaggctggctctgggaattctggaagctcccaagctttgtagcgcaggccaaca 15730131
Query: 414 gagcccaggggcagaggcagagctcaggaagggggacaccccctctgagccccattcgct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730132 gagcccaggggcagaggcagagctcaggaagggggacaccccctctgagccccattcgct 15730191
Query: 474 ttgcagctcagatgatagtgggcatctattttggccttgtggctctcattagcctttcct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730192 ttgcagctcagatgatagtgggcatctattttggccttgtggctctcattagcctttcct 15730251
Query: 534 tcatggccagcttctatattgtgggcctcccactggcagttggcttaggagtcttgctgg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730252 tcatggccagcttctatattgtgggcctcccactggcagttggcttaggagtcttgctgg 15730311
Query: 594 tagctgctgttggcaaccagacctcagactttaagcacaccctaggggtggcctttctta 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730312 tagctgctgttggcaaccagacctcagactttaagcacaccctaggggtggcctttctta 15730371
Query: 654 tttcccctatcttctatggccgccccatagccatcctgcccatcagcttggctgccagca 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730372 tttcccctatcttctatggccgccccatagccatcctgcccatcagcttggctgccagca 15730431
Query: 714 tcacagcccagaagcatcgccgctacaaaacttcaactgggtcagagacgctcagtgtgc 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730432 tcacagcccagaagcatcgccgctacaaaacttcaactgggtcagagacgctcagtgtgc 15730491
Query: 774 ggctctaccgcctgggcttggcttatctggctttcacaggcccgctagcatacagcgccc 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730492 ggctctaccgcctgggcttggcttatctggctttcacaggcccgctagcatacagcgccc 15730551
Query: 834 tctgcaacacagccaccaccctcagctatgtggcagagacccttggttccttcttgagtt 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730552 tctgcaacacagccaccaccctcagctatgtggcagagacccttggttccttcttgagtt 15730611
Query: 894 ggttcagtttcttccccctccttggccacctgatggagtctgtcctccttctgccttacc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730612 ggttcagtttcttccccctccttggccacctgatggagtctgtcctccttctgccttacc 15730671
Query: 954 gagtctggagtctgctggtgggagattatggcttcagcagcggctacttccaggagtggg 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730672 gagtctggagtctgctggtgggagattatggcttcagcagcggctacttccaggagtggg 15730731
Query: 1014 agaagctatatgagtttgttcagagttttcaggatgagaagcgtcagctggcataccagg 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730732 agaagctatatgagtttgttcagagttttcaggatgagaagcgtcagctggcataccagg 15730791
Query: 1074 t 1074
|
Sbjct: 15730792 t 15730792
Score = 1897 bits (957), Expect = 0.0
Identities = 960/961 (99%)
Strand = Plus / Minus
Query: 114 aggtccaaggataactttggggccatgactgccatgattctcacagtggatcccggattt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15811340 aggtccaaggataactttggggccatgactgccatgattctcacagtggatcccggattt 15811281
Query: 174 ctgcattccaagcaatggcaggtgccactggacttgttctgagaactttttcctaaagga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15811280 ctgcattccaagcaatggcaggtgccactggacttgttctgagaactttttcctaaagga 15811221
Query: 234 tggccaaggggctcctgatgacctatgccctttgggctgtagggggccctgctgggctcc 293
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15811220 tggccaaggggctcctgatgacctatgccctttgggctatagggggccctgctgggctcc 15811161
Query: 294 accacctgtacctggggcgggacagccatgcactgctctggatgcttaccctgggagggg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15811160 accacctgtacctggggcgggacagccatgcactgctctggatgcttaccctgggagggg 15811101
Query: 354 gtgggctaggctggctctgggaattctggaagctcccaagctttgtagcgcaggccaaca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15811100 gtgggctaggctggctctgggaattctggaagctcccaagctttgtagcgcaggccaaca 15811041
Query: 414 gagcccaggggcagaggcagagctcaggaagggggacaccccctctgagccccattcgct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15811040 gagcccaggggcagaggcagagctcaggaagggggacaccccctctgagccccattcgct 15810981
Query: 474 ttgcagctcagatgatagtgggcatctattttggccttgtggctctcattagcctttcct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810980 ttgcagctcagatgatagtgggcatctattttggccttgtggctctcattagcctttcct 15810921
Query: 534 tcatggccagcttctatattgtgggcctcccactggcagttggcttaggagtcttgctgg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810920 tcatggccagcttctatattgtgggcctcccactggcagttggcttaggagtcttgctgg 15810861
Query: 594 tagctgctgttggcaaccagacctcagactttaagcacaccctaggggtggcctttctta 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810860 tagctgctgttggcaaccagacctcagactttaagcacaccctaggggtggcctttctta 15810801
Query: 654 tttcccctatcttctatggccgccccatagccatcctgcccatcagcttggctgccagca 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810800 tttcccctatcttctatggccgccccatagccatcctgcccatcagcttggctgccagca 15810741
Query: 714 tcacagcccagaagcatcgccgctacaaaacttcaactgggtcagagacgctcagtgtgc 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810740 tcacagcccagaagcatcgccgctacaaaacttcaactgggtcagagacgctcagtgtgc 15810681
Query: 774 ggctctaccgcctgggcttggcttatctggctttcacaggcccgctagcatacagcgccc 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810680 ggctctaccgcctgggcttggcttatctggctttcacaggcccgctagcatacagcgccc 15810621
Query: 834 tctgcaacacagccaccaccctcagctatgtggcagagacccttggttccttcttgagtt 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810620 tctgcaacacagccaccaccctcagctatgtggcagagacccttggttccttcttgagtt 15810561
Query: 894 ggttcagtttcttccccctccttggccacctgatggagtctgtcctccttctgccttacc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810560 ggttcagtttcttccccctccttggccacctgatggagtctgtcctccttctgccttacc 15810501
Query: 954 gagtctggagtctgctggtgggagattatggcttcagcagcggctacttccaggagtggg 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810500 gagtctggagtctgctggtgggagattatggcttcagcagcggctacttccaggagtggg 15810441
Query: 1014 agaagctatatgagtttgttcagagttttcaggatgagaagcgtcagctggcataccagg 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15810440 agaagctatatgagtttgttcagagttttcaggatgagaagcgtcagctggcataccagg 15810381
Query: 1074 t 1074
|
Sbjct: 15810380 t 15810380
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 cacagaaagacaaagtccatttggatggaatcggagcggagagagaggggccattttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15728797 cacagaaagacaaagtccatttggatggaatcggagcggagagagaggggccattttgac 15728856
Query: 61 tctggggtcaaagggaatgaccgatctactggggtccgggagcggaggcacccaggt 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15728857 tctggggtcaaagggaatgaccgatctactggggtccgggagcggaggcacccaggt 15728913
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 1 cacagaaagacaaagtccatttggatggaatcggagcggagagagaggggccattttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15812375 cacagaaagacaaagtccatttggatggaatcggagcggagagagaggggccattttgac 15812316
Query: 61 tctggggtcaaagggaatgaccgatctactggggtccgggagcggaggcacccaggt 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15812315 tctggggtcaaagggaatgaccgatctactggggtccgggagcggaggcacccaggt 15812259
Score = 111 bits (56), Expect = 9e-22
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1071 aggttttgggtcttgccgagggggcaacaaatgaagaaatacattcacaaataccgggag 1130
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 15731531 aggttttgggtcttgccgagggggcaacaaatgaagaaataca-tcacagataccgggag 15731589
Query: 1131 ctggtgaa 1138
||||||||
Sbjct: 15731590 ctggtgaa 15731597
Score = 111 bits (56), Expect = 9e-22
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 1071 aggttttgggtcttgccgagggggcaacaaatgaagaaatacattcacaaataccgggag 1130
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 15809641 aggttttgggtcttgccgagggggcaacaaatgaagaaataca-tcacagataccgggag 15809583
Query: 1131 ctggtgaa 1138
||||||||
Sbjct: 15809582 ctggtgaa 15809575
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,867,663
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 6
Length of query: 1138
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1117
Effective length of database: 2,808,413,156
Effective search space: 3136997495252
Effective search space used: 3136997495252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)