Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002891
(1461 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039444.1| complement component C6 precursor [Bos tauru... 650 0.0
Alignment gi|NP_001039606.2| complement component 8, beta polypeptide [Bo... 160 4e-39
Alignment gi|NP_001039431.1| complement component C7 precursor [Bos tauru... 160 4e-39
Alignment gi|NP_001030441.1| complement component C9 precursor [Bos tauru... 150 4e-36
Alignment gi|NP_001039750.1| complement component C8 alpha chain [Bos tau... 149 8e-36
Alignment gi|NP_001193672.1| thrombospondin type-1 domain-containing prot... 57 4e-08
Alignment gi|NP_001071311.1| low-density lipoprotein receptor-related pro... 57 5e-08
Alignment gi|XP_002690044.1| PREDICTED: brain-specific angiogenesis inhib... 55 2e-07
Alignment gi|XP_001789178.2| PREDICTED: brain-specific angiogenesis inhib... 55 2e-07
Alignment gi|NP_777168.1| spondin-1 precursor [Bos taurus]. 54 4e-07
>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
Length = 932
Score = 650 bits (1677), Expect = 0.0
Identities = 302/372 (81%), Positives = 326/372 (87%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
M +HSV+YFILLS LIDKSQACFCDHYPW+QWSSCSKTCNSG ++YY +NF
Sbjct: 1 MARHSVMYFILLSALIDKSQACFCDHYPWSQWSSCSKTCNSGTQTRQRRIVTDKYYFENF 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
C +LCTKQE+RECNWQTCPINC LGDYGPWSDCDPCV+K+FKVRSILRP+QFGGQPCTEP
Sbjct: 61 CGQLCTKQESRECNWQTCPINCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
LMTF+PCIPSKLCKIEE+DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGR K VC
Sbjct: 121 LMTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRKKTVC 180
Query: 832 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
SR +NPIP VQLMG GFH LAGEPRGEVL NSFTGG+C+TVKSS+ASNP+RVPANLENVN
Sbjct: 181 SRSHNPIPGVQLMGMGFHFLAGEPRGEVLDNSFTGGVCRTVKSSRASNPYRVPANLENVN 240
Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
FEVQTKEDD + DFY+DLIPLE++KDQ+A G G SSF VPIFY AFK
Sbjct: 241 FEVQTKEDDLEADFYDDLIPLEDNKDQEALGSGLATSSFRVPIFYSSKRSQSSSHSSAFK 300
Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
QAIQAS KK SSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYN+ALYS IFDD
Sbjct: 301 QAIQASQKKASSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNSALYSRIFDD 360
Query: 1372 FGTHYFHSGSLG 1407
FGTHYF SGSLG
Sbjct: 361 FGTHYFTSGSLG 372
>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
Length = 590
Score = 160 bits (404), Expect = 4e-39
Identities = 97/317 (30%), Positives = 155/317 (48%), Gaps = 6/317 (1%)
Frame = +1
Query: 475 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 654
+ L ++TR + PI+C L + W+ CDPC +K+++ ++RP+QF G+ C
Sbjct: 45 ESLAKTRQTRSVDVTPLPIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSD 104
Query: 655 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 834
C+ ++ C+ +V C+ +GRCI +L CNG+NDCGD SDE NC +T C
Sbjct: 105 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQ 163
Query: 835 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 1014
++ ++ + +G ++ G VL + + G+C + FR P N+E NF
Sbjct: 164 QEMEQYWAIGSLASGINLFTNNLEGPVLDHRYYAGLCS--PHYILNTRFRKPYNVE--NF 219
Query: 1015 EVQTK-EDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHV-----PIFYXXXXXXXXXX 1176
QT+ + DF YE E++ TG +SSF + IF
Sbjct: 220 IPQTRGKYDFTLTEYESYSDFEHN----VTGTAISRSSFSLGFKIAGIFELGYSSMSNIG 275
Query: 1177 XXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYS 1356
+ + SH K S F+ ++V ++ +KT++L L FL+ + LPLEY+ Y
Sbjct: 276 QHFISRIRRFSHTK-SKFLHARSDLEVAHYKLKTRNLMLHHEFLQRVKQLPLEYSYGEYR 334
Query: 1357 PIFDDFGTHYFHSGSLG 1407
+F DFGTHY LG
Sbjct: 335 DLFRDFGTHYITEAVLG 351
>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
Length = 843
Score = 160 bits (404), Expect = 4e-39
Identities = 97/298 (32%), Positives = 147/298 (49%), Gaps = 4/298 (1%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
PINC G Y PWS+C+ C + Q + RSI Q+GG C +PC P++ C E+
Sbjct: 25 PINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTRGCPTED- 83
Query: 706 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
C +FRC SG+CI+ L CNG++DC D +DE C ++ C K P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDGADEDRCEDAESRPACD-KDKPPPNIELTGR 142
Query: 877 GFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFY 1056
G++ L G+ R +VL GG C+ V S + +R+ N+ + F+V+ +DF +FY
Sbjct: 143 GYNALTGQFRNQVLNTKSFGGQCRKVYSGDGRDFYRLSGNILSYTFQVKI-NNDFNNEFY 201
Query: 1057 EDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIR 1236
NS E SS F + + + KK +
Sbjct: 202 -------NSTWAYVKETSTEHSSSSKGRFLFFSSSSSSHGYSSNTNIL--TKKKSYQLLV 252
Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
+ ++V F + LQL++ F K L++LP Y+ + Y + D +GTHY SGSLG
Sbjct: 253 LQNTVEVAQFINNNPEFLQLAESFWKELSYLPSLYDYSAYRRLIDQYGTHYLQSGSLG 310
>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
Length = 548
Score = 150 bits (378), Expect = 4e-36
Identities = 90/322 (27%), Positives = 151/322 (46%), Gaps = 28/322 (8%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
PI+C + + WS CDPC+++ F+ RSI QF G+ C + + + C+P++ C+ E
Sbjct: 38 PIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNGRKCVDAVGDRQQCVPTEACEDPEE 97
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGR-TKAVC-SRKYNPIPSVQLMGAG 879
C N F+C +GRCI ++L CN +NDCGD SDE NC + + C +R + G G
Sbjct: 98 GCGNDFQCGTGRCIKNRLLCNEDNDCGDYSDEDNCEQDPRPPCRNRVVEESELARTAGFG 157
Query: 880 FHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYE 1059
+IL +P N + G+C V +R P N+ ++ ++ + + +F+T+ +E
Sbjct: 158 INILGMDPLSTPFDNQYYNGLCDRVWDGNTLTYYRRPWNVASLTYDTKA-DKNFRTENHE 216
Query: 1060 DLIP-LENSKDQQATGFGQEKSSFHVPI-------FYXXXXXXXXXXXXAFKQAIQA--- 1206
+ I L +++ F S + P+ K A +A
Sbjct: 217 ESIQILRTIIEEKKLNFNAGLSVKYTPVEAIEKNKCVDLEHSDKGSTSSPSKLAAEAKFR 276
Query: 1207 ---------------SHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYN 1341
S K++ F+ + + + F M+++D+ L FL ++N LP Y
Sbjct: 277 FTYSKDDIYRLLSSYSAKQEKMFLHVKGKVHLGRFVMRSRDVMLQTTFLDSINTLPTTYE 336
Query: 1342 AALYSPIFDDFGTHYFHSGSLG 1407
Y + +GTHY SGSLG
Sbjct: 337 KGEYFAFLETYGTHYSSSGSLG 358
>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
Length = 589
Score = 149 bits (375), Expect = 8e-36
Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 25/318 (7%)
Frame = +1
Query: 529 INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
++C L ++ W+DC PC +K+++ RS+L+PN+FGG C+ + C C + +
Sbjct: 40 VSCQLDNWAEWTDCFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTAC-LSQAQ 98
Query: 709 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 876
C F+C ++GRC+ L CNG+ DC D SDE +C + + CS+ Y+PIP +
Sbjct: 99 CGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRILENDCSQ-YDPIPGSEKAAL 157
Query: 877 GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 1005
G++IL E V + GG C+TV + + FR P N
Sbjct: 158 GYNILTQEEAQHVYDARYYGGQCETVYNGEWRELQYDPACERLYYGDDDKYFRKPYNFLK 217
Query: 1006 VNFEVQTKEDDFQTDFYED----LIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXX 1173
+FE Q + ++ Y D L ++N K ++G VP+
Sbjct: 218 YHFEAQA-DTKISSEIYNDANDLLTKVKNDKSV-SSGLTIGVGIRGVPV--TVTAGVSMS 273
Query: 1174 XXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALY 1353
AF + + H+K SF+RI ++ +F M+ +++ L + L++L LP Y+ +Y
Sbjct: 274 QDAAFLKKLSKYHEKKYSFMRIFTKVQTAHFKMRRENIVLDEGMLQSLMELPERYHYGMY 333
Query: 1354 SPIFDDFGTHYFHSGSLG 1407
+ +D+GTHY SGS+G
Sbjct: 334 AKFINDYGTHYITSGSMG 351
>ref|NP_001193672.1| thrombospondin type-1 domain-containing protein 7A [Bos taurus].
Length = 1647
Score = 57.0 bits (136), Expect = 4e-08
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 22/155 (14%)
Frame = +1
Query: 355 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLC---TKQETRE 507
CF Y T WS+C + C +G + N +C+ L T Q
Sbjct: 1209 CFHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEKTWQMNMS 1268
Query: 508 CNWQTCPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCI- 675
C + CP+NC L D+ PWS+C K + R++ +P Q G+PC + +PC
Sbjct: 1269 CMVE-CPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSKPCPV 1327
Query: 676 ---------PSKLCKIEEVDCKNKFRCDSGRCIAS 753
P C++++ C R + C+ S
Sbjct: 1328 KPCYQWRYGPWSACQVQDAQCGEGTRTRNISCVVS 1362
>ref|NP_001071311.1| low-density lipoprotein receptor-related protein 4 [Bos taurus].
Length = 1905
Score = 56.6 bits (135), Expect = 5e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-VCTAEQ- 274
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307
>ref|XP_002690044.1| PREDICTED: brain-specific angiogenesis inhibitor 3, partial [Bos
taurus].
Length = 777
Score = 54.7 bits (130), Expect = 2e-07
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
C N + S C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSATCSNGTQQRSRLCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|XP_001789178.2| PREDICTED: brain-specific angiogenesis inhibitor 3 [Bos taurus].
Length = 1490
Score = 54.7 bits (130), Expect = 2e-07
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
C N + S C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSATCSNGTQQRSRLCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|NP_777168.1| spondin-1 precursor [Bos taurus].
Length = 807
Score = 53.9 bits (128), Expect = 4e-07
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDYG 555
W++WS CS TC G L D ++ +C CPI+C L ++
Sbjct: 620 WSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEELEQVEKCMLPECPIDCELTEWS 675
Query: 556 PWSDCDPCVEK--QFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEE 702
WS+C+ K + R I QFGG PC E + K C+I +
Sbjct: 676 QWSECNKSCGKGHMIRTRMIQMEPQFGGTPCPE-------TVQRKKCRIRK 719
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,671,496
Number of extensions: 1331356
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4040
Number of HSP's successfully gapped: 42
Length of query: 487
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 381
Effective length of database: 14,174,046
Effective search space: 5400311526
Effective search space used: 5400311526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002891
(1461 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868028.1| PREDICTED: similar to Complement component C6 p... 640 0.0
Alignment gi|XP_536488.2| PREDICTED: similar to Complement component C6 p... 640 0.0
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 386 e-107
Alignment gi|XP_536694.2| PREDICTED: similar to Complement component C8 b... 157 3e-38
Alignment gi|XP_546339.2| PREDICTED: similar to complement component 7 pr... 150 4e-36
Alignment gi|XP_536695.2| PREDICTED: similar to complement component 8, a... 140 3e-33
Alignment gi|XP_536494.2| PREDICTED: similar to Complement component C9 p... 126 6e-29
Alignment gi|XP_868034.1| PREDICTED: similar to complement component 7 pr... 97 5e-20
Alignment gi|XP_867064.1| PREDICTED: similar to Brain-specific angiogenes... 57 3e-08
Alignment gi|XP_867052.1| PREDICTED: similar to Brain-specific angiogenes... 57 3e-08
>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
[Canis familiaris].
Length = 936
Score = 640 bits (1650), Expect = 0.0
Identities = 301/374 (80%), Positives = 324/374 (86%), Gaps = 2/374 (0%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
M S+LYFILLS LIDK Q CFCDHYPW+QWSSCSKTCN G +QYYLDNF
Sbjct: 1 MAGQSILYFILLSALIDKCQPCFCDHYPWSQWSSCSKTCNFGTQSRQRKIVVDQYYLDNF 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
CD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSILRP+QFGGQPCTEP
Sbjct: 61 CDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
L+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERNCGR KAVC
Sbjct: 121 LVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVC 180
Query: 832 --SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLEN 1005
R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVKSSKASNP+RVPANLEN
Sbjct: 181 PGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLEN 240
Query: 1006 VNFEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXA 1185
VNFEVQTKEDD +TDFY+DLI L +++QQ G+E+SS ++PIFY A
Sbjct: 241 VNFEVQTKEDDLETDFYKDLISLTKNENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSA 300
Query: 1186 FKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIF 1365
FKQAIQASHKKDSSF RIHKVI+VLNFTMKTKDLQLSDVFLKALNHLPLEYN ALYS IF
Sbjct: 301 FKQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIF 360
Query: 1366 DDFGTHYFHSGSLG 1407
DDFGTHY+ SGSLG
Sbjct: 361 DDFGTHYYTSGSLG 374
>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
[Canis familiaris].
Length = 936
Score = 640 bits (1650), Expect = 0.0
Identities = 301/374 (80%), Positives = 324/374 (86%), Gaps = 2/374 (0%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
M S+LYFILLS LIDK Q CFCDHYPW+QWSSCSKTCN G +QYYLDNF
Sbjct: 1 MAGQSILYFILLSALIDKCQPCFCDHYPWSQWSSCSKTCNFGTQSRQRKIVVDQYYLDNF 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
CD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSILRP+QFGGQPCTEP
Sbjct: 61 CDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
L+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERNCGR KAVC
Sbjct: 121 LVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVC 180
Query: 832 --SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLEN 1005
R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVKSSKASNP+RVPANLEN
Sbjct: 181 PGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLEN 240
Query: 1006 VNFEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXA 1185
VNFEVQTKEDD +TDFY+DLI L +++QQ G+E+SS ++PIFY A
Sbjct: 241 VNFEVQTKEDDLETDFYKDLISLTKNENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSA 300
Query: 1186 FKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIF 1365
FKQAIQASHKKDSSF RIHKVI+VLNFTMKTKDLQLSDVFLKALNHLPLEYN ALYS IF
Sbjct: 301 FKQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIF 360
Query: 1366 DDFGTHYFHSGSLG 1407
DDFGTHY+ SGSLG
Sbjct: 361 DDFGTHYYTSGSLG 374
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 386 bits (992), Expect = e-107
Identities = 174/192 (90%), Positives = 184/192 (95%), Gaps = 2/192 (1%)
Frame = +1
Query: 448 NQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQF 627
+QYYLDNFCD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSILRP+QF
Sbjct: 30 DQYYLDNFCDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQF 89
Query: 628 GGQPCTEPLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERN 807
GGQPCTEPL+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERN
Sbjct: 90 GGQPCTEPLVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERN 149
Query: 808 CGRTKAVC--SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPF 981
CGR KAVC R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVKSSKASNP+
Sbjct: 150 CGRAKAVCPGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPY 209
Query: 982 RVPANLENVNFE 1017
RVPANLENVNFE
Sbjct: 210 RVPANLENVNFE 221
Score = 117 bits (293), Expect = 3e-26
Identities = 57/64 (89%), Positives = 60/64 (93%)
Frame = +1
Query: 1216 KDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHS 1395
+DSSF RIHKVI+VLNFTMKTKDLQLSDVFLKALNHLPLEYN ALYS IFDDFGTHY+ S
Sbjct: 221 EDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIFDDFGTHYYTS 280
Query: 1396 GSLG 1407
GSLG
Sbjct: 281 GSLG 284
>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
(Complement component 8 beta subunit) [Canis familiaris].
Length = 590
Score = 157 bits (396), Expect = 3e-38
Identities = 90/311 (28%), Positives = 144/311 (46%)
Frame = +1
Query: 475 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 654
+ L ++TR + PI+C L + W+ CDPC +K+++ S+LRP+QF G+PC
Sbjct: 45 ESLAKSRQTRSVDVTLMPIDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSD 104
Query: 655 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 834
C+ S+ C+ +V C+ +GRC+ +L CNG+NDCGD SDE NC R C
Sbjct: 105 KEVEDCVTSRPCR-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQ 163
Query: 835 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 1014
+ ++ + +G ++ G VL + + G C + FR P N+E+
Sbjct: 164 HEMEQYWAIGRLASGVNLFTNSFEGPVLDHRYYAGGCS--PHYILNTRFRKPYNVESYTP 221
Query: 1015 EVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQ 1194
+ Q K F YE E++ + F +P + F
Sbjct: 222 QTQGKY-KFALTAYESYSDFEHNITKTERSTSSFSFGFKIPEIFEFGISMASDNGKHFIS 280
Query: 1195 AIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDF 1374
I+ S+F+ ++V ++ +K + L L FL+ + LPLEY+ Y +F DF
Sbjct: 281 RIKRFSHTKSTFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKLLPLEYSYGEYRDLFRDF 340
Query: 1375 GTHYFHSGSLG 1407
GTHY LG
Sbjct: 341 GTHYITEAVLG 351
>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
[Canis familiaris].
Length = 863
Score = 150 bits (378), Expect = 4e-36
Identities = 88/298 (29%), Positives = 142/298 (47%), Gaps = 4/298 (1%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
P+NC Y PWS+C+ C + Q RS+ Q+GG PC +PC P++ C EE
Sbjct: 25 PVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE- 83
Query: 706 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
C +FRC SG+CI+ L CNG++DC D++DE C ++ C P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLD-QPPPNIELTGN 142
Query: 877 GFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFY 1056
G++ L G+ + +V+ GG C+ V S + +R+ N+ + F+V+ +DF +FY
Sbjct: 143 GYNELTGQFKNKVINTKSFGGQCRKVFSGDGNFFYRLSGNILSYTFQVKI-NNDFNYEFY 201
Query: 1057 EDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIR 1236
+ T ++ S F + K+ +
Sbjct: 202 NSSWSYVKHTSAEYTSSRKKSSLF---------SSSSSSSYNRISHTSKTHENKNHQLLI 252
Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
+ ++V F + L L++ F K L+ LP Y+ + Y + D +GTHY SGSLG
Sbjct: 253 VQNTVEVAQFVNNNPEFLHLAEPFWKELSLLPPLYDYSAYRRLIDQYGTHYLQSGSLG 310
>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
precursor [Canis familiaris].
Length = 589
Score = 140 bits (353), Expect = 3e-33
Identities = 89/322 (27%), Positives = 149/322 (46%), Gaps = 25/322 (7%)
Frame = +1
Query: 517 QTCPIN---CLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKL 687
Q+ PI C L ++ W+DC PC +K+++ RS+L+P++FGG C+ + C
Sbjct: 33 QSAPITAVPCQLSNWSEWTDCFPCQDKKYRYRSLLQPDKFGGTICSGDVWDQASCHSPTA 92
Query: 688 CKIEEVDCKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIP 855
C + + C F+C ++GRC+ L CNG+ DC D SDE +C + CS+ Y PIP
Sbjct: 93 C-LHQAQCGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRVAENDCSQ-YEPIP 150
Query: 856 SVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFR 984
+ G++IL + V + GG C+TV + + FR
Sbjct: 151 GSESAALGYNILTQKEAQHVYDPRYYGGQCETVYNGEWREIRYDPTCERLYYGEDEKYFR 210
Query: 985 VPANLENVNFEVQTKEDDFQTDFYEDLIPLENS-KDQQATGFGQEKSSFHVPIFYXXXXX 1161
P N +FE + F ++ Y+D L + K+ G
Sbjct: 211 KPYNFLKYHFEALA-DTRFSSELYDDAHDLLSKVKNNNFVSTGVTVGVSFTGSSVTVDVG 269
Query: 1162 XXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYN 1341
+ ++ +KK SF+R+ ++ +F M+ ++ L + L++L LP +YN
Sbjct: 270 VSSSQNSSSLDELKKYNKKKYSFLRVFTKVQTAHFKMRRGNIVLDEGMLQSLMELPEQYN 329
Query: 1342 AALYSPIFDDFGTHYFHSGSLG 1407
+Y+ +D+GTHY SGS+G
Sbjct: 330 YGMYAKFINDYGTHYITSGSMG 351
>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
familiaris].
Length = 589
Score = 126 bits (316), Expect = 6e-29
Identities = 96/340 (28%), Positives = 144/340 (42%), Gaps = 37/340 (10%)
Frame = +1
Query: 499 TRECNWQTCPINCLLGDYGPWSDCDPCVEK------------QFKVRSILRPNQFGGQPC 642
TRE N P++C + + WS+CDPC+++ QF RSI QF GQ
Sbjct: 41 TRE-NDTPFPVDCRMSSWSQWSECDPCLKQMVKILIFPAGFVQFPSRSIQVFRQFKGQKG 99
Query: 643 TEPLMTFRPCIPSKLCKIEEVDCKN-KFRCDSGRCIASKLECNGENDCGDNSDERNC-GR 816
L P C E D F C +GRCI +L CNG+NDCGD SDE +C
Sbjct: 100 VAALGNRGHWDPGDPCAPGEEDWGGGDFGCRTGRCIKKRLLCNGDNDCGDFSDEDDCESD 159
Query: 817 TKAVCSRKY-NPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPA 993
+ C K ++ G G +IL EP N + G+C V+ +R P
Sbjct: 160 PRLPCREKVVEESELARMAGYGINILGMEPLSTPFDNEYYNGLCDRVRDGNTLVYYRRPW 219
Query: 994 NLENVNFEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQ-------------------- 1113
N+ ++ +E + + +F+T++YE+ I Q+ T +
Sbjct: 220 NVASLVYETKA-DKNFRTEYYEEQIESFKKIVQEKTSNFKADIALKLTPTEAIEKCKINP 278
Query: 1114 --EKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDL 1287
E S I ++ + S KK+ F+ + VI + F M+++D+
Sbjct: 279 EGEDSPRDSSINAESKFQFTYSKNEIYQLFLTHSSKKEKVFLHVKGVIHLGRFVMRSRDV 338
Query: 1288 QLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
L+ FL + LP Y Y + +GTHY SGSLG
Sbjct: 339 MLTTTFLDDIKALPSTYEKGEYFAFLETYGTHYSSSGSLG 378
>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
[Canis familiaris].
Length = 143
Score = 96.7 bits (239), Expect = 5e-20
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
P+NC Y PWS+C+ C + Q RS+ Q+GG PC +PC P++ C EE
Sbjct: 25 PVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE- 83
Query: 706 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
C +FRC SG+CI+ L CNG++DC D++DE C ++ C P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLD-QPPPNIELTGN 142
Query: 877 G 879
G
Sbjct: 143 G 143
>ref|XP_867064.1| PREDICTED: similar to Brain-specific angiogenesis inhibitor 3
precursor isoform 5 [Canis familiaris].
Length = 1523
Score = 57.4 bits (137), Expect = 3e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSPWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|XP_867052.1| PREDICTED: similar to Brain-specific angiogenesis inhibitor 3
precursor isoform 4 [Canis familiaris].
Length = 984
Score = 57.4 bits (137), Expect = 3e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSPWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,964,862
Number of extensions: 1371971
Number of successful extensions: 4255
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4122
Number of HSP's successfully gapped: 29
Length of query: 487
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 380
Effective length of database: 15,307,552
Effective search space: 5816869760
Effective search space used: 5816869760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002891
(1461 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108603.2| complement component C6 precursor [Homo sapi... 615 e-176
Alignment gi|NP_000056.2| complement component C6 precursor [Homo sapiens]. 615 e-176
Alignment gi|NP_001728.1| complement component C9 precursor [Homo sapiens]. 161 1e-39
Alignment gi|NP_000578.2| complement component C7 precursor [Homo sapiens]. 158 1e-38
Alignment gi|NP_000553.1| complement component C8 alpha chain precursor [... 152 6e-37
Alignment gi|NP_000057.1| complement component C8 beta chain preproprotei... 149 8e-36
Alignment gi|NP_002325.2| low-density lipoprotein receptor-related protei... 57 3e-08
Alignment gi|NP_001695.1| brain-specific angiogenesis inhibitor 3 precurs... 57 3e-08
Alignment gi|NP_006099.2| spondin-1 precursor [Homo sapiens]. 56 1e-07
Alignment gi|NP_056019.1| thrombospondin type-1 domain-containing protein... 56 1e-07
>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 615 bits (1585), Expect = e-176
Identities = 286/372 (76%), Positives = 316/372 (84%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
M + SVLYFILL+ LI+K QACFCDHY WTQW+SCSKTCNSG ++YY +NF
Sbjct: 1 MARRSVLYFILLNALINKGQACFCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENF 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
C+++C+KQETRECNWQ CPINCLLGD+GPWSDCDPC+EKQ KVRS+LRP+QFGGQPCT P
Sbjct: 61 CEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
L+ F+PCIPSKLCKIEE DCKNKFRCDSGRCIA KLECNGENDCGDNSDER+CGRTKAVC
Sbjct: 121 LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 180
Query: 832 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
+RKYNPIPSVQLMG GFH LAGEPRGEVL NSFTGGICKTVKSS+ SNP+RVPANLENV
Sbjct: 181 TRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVG 240
Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
FEVQT EDD +TDFY+DL L ++++QQ + Q SSF VPIFY AFK
Sbjct: 241 FEVQTAEDDLKTDFYKDLTSLGHNENQQGSFSSQGGSSFSVPIFYSSKRSENINHNSAFK 300
Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
QAIQASHKKDSSFIRIHKV+KVLNFT K KDL LSDVFLKALNHLPLEYN+ALYS IFDD
Sbjct: 301 QAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDD 360
Query: 1372 FGTHYFHSGSLG 1407
FGTHYF SGSLG
Sbjct: 361 FGTHYFTSGSLG 372
>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 615 bits (1585), Expect = e-176
Identities = 286/372 (76%), Positives = 316/372 (84%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
M + SVLYFILL+ LI+K QACFCDHY WTQW+SCSKTCNSG ++YY +NF
Sbjct: 1 MARRSVLYFILLNALINKGQACFCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENF 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
C+++C+KQETRECNWQ CPINCLLGD+GPWSDCDPC+EKQ KVRS+LRP+QFGGQPCT P
Sbjct: 61 CEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
L+ F+PCIPSKLCKIEE DCKNKFRCDSGRCIA KLECNGENDCGDNSDER+CGRTKAVC
Sbjct: 121 LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 180
Query: 832 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
+RKYNPIPSVQLMG GFH LAGEPRGEVL NSFTGGICKTVKSS+ SNP+RVPANLENV
Sbjct: 181 TRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVG 240
Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
FEVQT EDD +TDFY+DL L ++++QQ + Q SSF VPIFY AFK
Sbjct: 241 FEVQTAEDDLKTDFYKDLTSLGHNENQQGSFSSQGGSSFSVPIFYSSKRSENINHNSAFK 300
Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
QAIQASHKKDSSFIRIHKV+KVLNFT K KDL LSDVFLKALNHLPLEYN+ALYS IFDD
Sbjct: 301 QAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDD 360
Query: 1372 FGTHYFHSGSLG 1407
FGTHYF SGSLG
Sbjct: 361 FGTHYFTSGSLG 372
>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
Length = 559
Score = 161 bits (408), Expect = 1e-39
Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 25/329 (7%)
Frame = +1
Query: 496 ETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCI 675
E E + I+C + + WS CDPC+ + F+ RSI QF G+ CT+ + R C+
Sbjct: 30 ELTESSGSASHIDCRMSPWSEWSQCDPCLRQMFRSRSIEVFGQFNGKRCTDAVGDRRQCV 89
Query: 676 PSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC-GRTKAVC-SRKYNP 849
P++ C+ E DC N F+C +GRCI +L CNG+NDCGD SDE +C + C R
Sbjct: 90 PTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCESEPRPPCRDRVVEE 149
Query: 850 IPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTK 1029
+ G G +IL +P N F G+C + +R P N+ ++ +E +
Sbjct: 150 SELARTAGYGINILGMDPLSTPFDNEFYNGLCNRDRDGNTLTYYRRPWNVASLIYETKG- 208
Query: 1030 EDDFQTDFYEDLI-----------------------PLENSKDQQATGFGQEKSSFHVPI 1140
E +F+T+ YE+ I P E +K +Q E+++ + +
Sbjct: 209 EKNFRTEHYEEQIEAFKSIIQEKTSNFNAAISLKFTPTETNKAEQCC----EETASSISL 264
Query: 1141 FYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALN 1320
++ + S KK+ F+ + I + F M+ +D+ L+ F+ +
Sbjct: 265 HGKGSFRFSYSKNETYQLFLSYSSKKEKMFLHVKGEIHLGRFVMRNRDVVLTTTFVDDIK 324
Query: 1321 HLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
LP Y Y + +GTHY SGSLG
Sbjct: 325 ALPTTYEKGEYFAFLETYGTHYSSSGSLG 353
>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
Length = 843
Score = 158 bits (400), Expect = 1e-38
Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 4/302 (1%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
P+NC Y PWS+C+ C + Q + RS+ Q+GGQPC + C P++ C EE
Sbjct: 25 PVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGCPTEE- 83
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCG-DNSDERNCGRTKAVCSRKYN-PIPSVQLMGAG 879
C +FRC SG+CI+ L CNG++DC D++DE C ++ S + P P+++L G G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCDEDSADEDRCEDSERRPSCDIDKPPPNIELTGNG 143
Query: 880 FHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYE 1059
++ L G+ R V+ GG C+ V S + +R+ N+ + F+V+ +DF +FY
Sbjct: 144 YNELTGQFRNRVINTKSFGGQCRKVFSGDGKDFYRLSGNVLSYTFQVKI-NNDFNYEFYN 202
Query: 1060 DLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHK-KDSSFIR 1236
+ T +++S F ++ HK K +
Sbjct: 203 STWSYVKHTSTEHTSSSRKRSFFR----------SSSSSSRSYTSHTNEIHKGKSYQLLV 252
Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLGKP 1413
+ ++V F + LQL++ F K L+HLP Y+ + Y + D +GTHY SGSLG
Sbjct: 253 VENTVEVAQFINNNPEFLQLAEPFWKELSHLPSLYDYSAYRRLIDQYGTHYLQSGSLGGE 312
Query: 1414 VR 1419
R
Sbjct: 313 YR 314
>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
Length = 584
Score = 152 bits (385), Expect = 6e-37
Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 22/315 (6%)
Frame = +1
Query: 529 INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
+ C L ++ W+DC PC +K+++ RS+L+PN+FGG C+ + C S C + +
Sbjct: 37 VTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTC-VRQAQ 95
Query: 709 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 876
C F+C ++GRC+ L CNG+ DC D SDE +C +A+ CS+ Y PIP Q
Sbjct: 96 CGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ-YEPIPGSQKAAL 154
Query: 877 GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 1005
G++IL E V S+ GG C+TV + + FR P N
Sbjct: 155 GYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLK 214
Query: 1006 VNFEVQTKEDDFQTDFYEDLIPLENS-KDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXX 1182
+FE + ++FY++ L + K ++ FG
Sbjct: 215 YHFEALA-DTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDT 273
Query: 1183 AFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPI 1362
+F + ++K F RI ++ +F M+ D+ L + L++L LP +YN +Y+
Sbjct: 274 SFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKF 333
Query: 1363 FDDFGTHYFHSGSLG 1407
+D+GTHY SGS+G
Sbjct: 334 INDYGTHYITSGSMG 348
>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
Length = 591
Score = 149 bits (375), Expect = 8e-36
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 1/306 (0%)
Frame = +1
Query: 493 QETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPC 672
++ R + PI+C L + W+ CDPC +K+++ +L+P+QF G+PC C
Sbjct: 51 RQMRSVDVTLMPIDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDC 110
Query: 673 IPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPI 852
+ ++ C +V C+ +GRC+ +L CNG+NDCGD SDE NC R C + +
Sbjct: 111 VTNRPCG-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQY 169
Query: 853 PSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKE 1032
+ + +G ++ G VL + + G C + FR P N+E+ + Q K
Sbjct: 170 WGIGSLASGINLFTNSFEGPVLDHRYYAGGCS--PHYILNTRFRKPYNVESYTPQTQGKY 227
Query: 1033 DDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVP-IFYXXXXXXXXXXXXAFKQAIQAS 1209
+F YE E + ++ F +P IF ++ + S
Sbjct: 228 -EFILKEYESYSDFERNVTEKMASKSGFSFGFKIPGIFELGISSQSDRGKHYIRRTKRFS 286
Query: 1210 HKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYF 1389
H K S F+ ++V ++ +K + L L FL+ + LPLEY+ Y +F DFGTHY
Sbjct: 287 HTK-SVFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKRLPLEYSYGEYRDLFRDFGTHYI 345
Query: 1390 HSGSLG 1407
LG
Sbjct: 346 TEAVLG 351
>ref|NP_002325.2| low-density lipoprotein receptor-related protein 4 precursor [Homo
sapiens].
Length = 1905
Score = 57.4 bits (137), Expect = 3e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCHSGRCVRLSWRCDGEDDCADNSDEENCENT 307
>ref|NP_001695.1| brain-specific angiogenesis inhibitor 3 precursor [Homo sapiens].
Length = 1522
Score = 57.4 bits (137), Expect = 3e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|NP_006099.2| spondin-1 precursor [Homo sapiens].
Length = 807
Score = 55.8 bits (133), Expect = 1e-07
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 373 PWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDY 552
PW++WS CS TC G L D ++ +C CPI+C L ++
Sbjct: 619 PWSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEDLEQVEKCMLPECPIDCELTEW 674
Query: 553 GPWSDCDPCVEK--QFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEE 702
WS+C+ K + R I QFGG PC E + K C+I +
Sbjct: 675 SQWSECNKSCGKGHVIRTRMIQMEPQFGGAPCPE-------TVQRKKCRIRK 719
>ref|NP_056019.1| thrombospondin type-1 domain-containing protein 7A precursor [Homo
sapiens].
Length = 1657
Score = 55.8 bits (133), Expect = 1e-07
Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 29/193 (15%)
Frame = +1
Query: 361 CDHYPW--TQWSSCSKT----CNSGXXXXXXXXXXNQ-YYLD-NFCDRLCTKQETRECNW 516
C HY + T WS+C + C +G + +D +C+ L ++ NW
Sbjct: 1219 CYHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVDLKYCEALGLEK-----NW 1273
Query: 517 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFR 666
Q CP+NC L D+ PWS+C K + R++ +P Q G+PC + +
Sbjct: 1274 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPSLMDQSK 1333
Query: 667 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
PC P K C+++E C R + C+ S +D DE C
Sbjct: 1334 PC-PVKPCYRWQYGQWSPCQVQEAQCGEGTRTRNISCVVSD---GSADDFSKVVDEEFCA 1389
Query: 814 RTKAVCSRKYNPI 852
+ + N +
Sbjct: 1390 DIELIIDGNKNMV 1402
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,145,375
Number of extensions: 1367307
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 4165
Number of HSP's successfully gapped: 29
Length of query: 487
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 380
Effective length of database: 14,770,016
Effective search space: 5612606080
Effective search space used: 5612606080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002891
(1461 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057913.2| complement component 6 [Mus musculus]. 578 e-165
Alignment gi|NP_001230766.1| complement component C7 [Mus musculus]. 160 3e-39
Alignment gi|NP_038513.1| complement component C9 [Mus musculus]. 151 1e-36
Alignment gi|NP_666260.1| complement component C8 alpha chain precursor [... 146 5e-35
Alignment gi|NP_598643.1| complement component C8 beta chain precursor [M... 142 9e-34
Alignment gi|NP_663559.1| spondin-1 precursor [Mus musculus]. 57 3e-08
Alignment gi|NP_783573.4| brain-specific angiogenesis inhibitor 3 precurs... 57 3e-08
Alignment gi|NP_001139329.1| low-density lipoprotein receptor-related pro... 57 4e-08
Alignment gi|NP_766256.3| low-density lipoprotein receptor-related protei... 57 4e-08
Alignment gi|NP_001074557.1| low-density lipoprotein receptor-related pro... 55 1e-07
>ref|NP_057913.2| complement component 6 [Mus musculus].
Length = 769
Score = 578 bits (1490), Expect = e-165
Identities = 269/372 (72%), Positives = 301/372 (80%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
M +H L FILL LIDKS+ACFCDHYPWT WSSCSK+CNSG N YY N
Sbjct: 1 MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
CD+LC KQETRECN QTCPINC+LGDYG WSDCDPC EKQ KV+S+LRP+QFGGQPCTEP
Sbjct: 61 CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
L+TF+PC+PSKLCKIEE +CKNKF CDSGRCI SKLECNGENDCGDNSDERNCGRTK VC
Sbjct: 121 LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC 180
Query: 832 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
+R Y PIPSVQLMG GFH LAGEPRGEVL NSFTGGICK VK+S+ASNP+RV ANLENVN
Sbjct: 181 TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN 240
Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
FEVQT EDD +T+FY++LI E +K++ + + F +PIF+ AF
Sbjct: 241 FEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFN 300
Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
+ I+ASHKKDSSFIRIHK+IKVLNFTMK DLQLSDVFLKAL HLPLEYN+A+YS IFDD
Sbjct: 301 KVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDD 360
Query: 1372 FGTHYFHSGSLG 1407
FGTHYF SGSLG
Sbjct: 361 FGTHYFTSGSLG 372
>ref|NP_001230766.1| complement component C7 [Mus musculus].
Length = 845
Score = 160 bits (404), Expect = 3e-39
Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 3/301 (0%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
P+NC YGPWS+C+ C + Q + RS+ Q+GG PC + C P + C EE
Sbjct: 25 PVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPERGCPTEE- 83
Query: 706 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYNPIPSVQLMGAGF 882
C ++FRC SG+CI+ L CNG+ DC D +DE C P P+++L G G+
Sbjct: 84 GCGDRFRCFSGQCISKSLVCNGDPDCEEDGADEDKCENVANPSCNIDKPPPNIELTGYGY 143
Query: 883 HILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYED 1062
+++ G+ + V+ GG C+ V S + +R+ N+ + F+V+ ++DF +FY
Sbjct: 144 NVVTGQGKKRVINTKSFGGQCRKVFSGDGKDFYRLSGNILSYTFQVKV-DNDFNYEFYNS 202
Query: 1063 LIP-LENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRI 1239
++++ +Q T + + H Y + K+ I + K + +
Sbjct: 203 SWSYIKHTSTEQNTFYSWKGLFSHSRNTY---------GHGSAKEEID-TKMKSYKLLVV 252
Query: 1240 HKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLGKPV 1416
++V FT + LQ+++ F K L+HLP Y+ + Y + D +GTHY SGSLG
Sbjct: 253 QNTVEVAQFTNNNPEFLQVAEPFWKELSHLPTLYDYSAYRRLIDQYGTHYLQSGSLGGEY 312
Query: 1417 R 1419
R
Sbjct: 313 R 313
>ref|NP_038513.1| complement component C9 [Mus musculus].
Length = 561
Score = 151 bits (382), Expect = 1e-36
Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 23/317 (7%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
PI+C + + WS+CDPC++++F+ RSIL QF G+ C + L + C P++ C+ +
Sbjct: 51 PIDCRMSPWSNWSECDPCLKQRFRSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQE 110
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT-KAVCSRKYNPIPSVQLM-GAG 879
+C N F+C++GRCI +L CNG+NDCGD SDE +C + C + + L G G
Sbjct: 111 NCGNDFQCETGRCIKRRLLCNGDNDCGDYSDENDCDDDPRTPCRDRVAEESELGLTAGYG 170
Query: 880 FHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYE 1059
+IL EP N F G+C V+ K +R P N+ ++ +E + + F+T+ Y+
Sbjct: 171 INILGMEPLRTPFDNEFYNGLCDRVRDEKTY--YRKPWNVVSLIYETKA-DKSFRTENYD 227
Query: 1060 DLIPLENSKDQQAT-------------------GFGQEKSSFHV--PIFYXXXXXXXXXX 1176
+ + + + +++ T G G+ + H P
Sbjct: 228 EHLEVFKAINREKTSNFNADFALKFSATEVPEKGAGEVSPAEHSSKPTNISAKFKFSYFM 287
Query: 1177 XXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYS 1356
F++ + F+ + V+++ F M+ +D+ L FL + LP Y Y
Sbjct: 288 GKNFRRLSSYFSQSKKMFVHLRGVVQLGRFVMRNRDVVLRSTFLDDVKALPTSYEKGEYF 347
Query: 1357 PIFDDFGTHYFHSGSLG 1407
+ +GTHY SGSLG
Sbjct: 348 GFLETYGTHYSTSGSLG 364
>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
Length = 587
Score = 146 bits (368), Expect = 5e-35
Identities = 88/320 (27%), Positives = 149/320 (46%), Gaps = 27/320 (8%)
Frame = +1
Query: 529 INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
++C L D+ W+DC PC +K+++ RS+L+P++FGG C+ + C C + +
Sbjct: 37 VSCQLSDWYKWTDCFPCQDKKYRYRSLLQPSKFGGTICSGDIWDEASCDSPTPC-LRQAQ 95
Query: 709 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS--RKYNPIPSVQLMGAG 879
C F+C ++GRC+ L CNG+NDC D SDE +C + +Y PIP + G
Sbjct: 96 CGQDFQCRETGRCLKRHLVCNGDNDCLDGSDESDCEDVRVTEDDCHQYEPIPGSERAALG 155
Query: 880 FHILAGEPRGEVLGNSFTGGICKTVKSS-----------------KASNPFRVPANLENV 1008
++IL E V + GG C+TV + + FR P N
Sbjct: 156 YNILTQEEAQSVYDAKYYGGQCETVYNGDWRKLRYDPTCERLYYGEDEKYFRKPYNFLKY 215
Query: 1009 NFEVQTKEDDFQTDFYED----LIPLENSKDQQA---TGFGQEKSSFHVPIFYXXXXXXX 1167
+FE + ++FY+D ++N K A G KS + +
Sbjct: 216 HFEALA-DTSISSEFYDDANDLFFHIKNGKSHSAGVTVGVAPVKSPVSIEV------TGS 268
Query: 1168 XXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAA 1347
+F + ++K F+R+ I+ F M+ ++ L + L++L LP ++N
Sbjct: 269 GSKASSFLNKLNKYNEKRYGFMRVSTKIQTAQFKMRRNNIVLDEGMLQSLMELPEQFNYG 328
Query: 1348 LYSPIFDDFGTHYFHSGSLG 1407
+Y+ +D+GTHY SG++G
Sbjct: 329 MYAKFINDYGTHYITSGTMG 348
>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
Length = 589
Score = 142 bits (357), Expect = 9e-34
Identities = 86/295 (29%), Positives = 136/295 (46%), Gaps = 1/295 (0%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
PI+C L + W+ CDPC +K+++ +LRP+QF G+ C C+ ++ C+ +V
Sbjct: 61 PIDCELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCR-SQV 119
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPIPSVQLMGAGFH 885
C+ +GRC+ +L CNG+NDCGD SDE NC R C R+ ++ + +G +
Sbjct: 120 RCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKNCQREMEQYWAIDRLASGIN 179
Query: 886 ILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTK-EDDFQTDFYED 1062
+ G VL + + G C FR P N+E ++ QTK E +F YE
Sbjct: 180 LFTNTFEGPVLDHRYYAGGCS--PHYILDTNFRKPYNVE--SYTPQTKCEYEFTLTEYES 235
Query: 1063 LIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIH 1242
E ++ T S F V + + S F+
Sbjct: 236 YSDFERLVIEKKTHMFNFTSGFKVDGVMDLGIKVESNEGKNYVTRTKRFAHTQSKFLHAR 295
Query: 1243 KVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
V++V ++ +K++ L L FL+ + LPLEY+ Y + DFGTH+ LG
Sbjct: 296 SVLEVAHYKLKSRSLMLHYEFLQRVKSLPLEYSYGEYRDLLRDFGTHFITEAVLG 350
>ref|NP_663559.1| spondin-1 precursor [Mus musculus].
Length = 807
Score = 57.4 bits (137), Expect = 3e-08
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 373 PWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDY 552
PW++WS CS TC G L D ++ +C CPI+C L ++
Sbjct: 619 PWSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEDLEQAEKCMLPECPIDCELSEW 674
Query: 553 GPWSDCDPCVEK--QFKVRSILRPNQFGGQPCTE 648
WS+C+ K + R+I QFGG PC E
Sbjct: 675 SQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPE 708
>ref|NP_783573.4| brain-specific angiogenesis inhibitor 3 precursor [Mus musculus].
Length = 1522
Score = 57.4 bits (137), Expect = 3e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSACSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 HCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|NP_001139329.1| low-density lipoprotein receptor-related protein 4 isoform 2 [Mus
musculus].
Length = 519
Score = 57.0 bits (136), Expect = 4e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINSGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307
>ref|NP_766256.3| low-density lipoprotein receptor-related protein 4 isoform 1 [Mus
musculus].
Length = 1905
Score = 57.0 bits (136), Expect = 4e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINSGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274
Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307
>ref|NP_001074557.1| low-density lipoprotein receptor-related protein 2 precursor [Mus
musculus].
Length = 4660
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/127 (33%), Positives = 51/127 (40%), Gaps = 26/127 (20%)
Frame = +1
Query: 547 DYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVDC----- 711
D G SD +P RS N+F C P CIPS E DC
Sbjct: 2848 DCGDGSDENPIYCASHTCRS----NEF---QCVSP----HRCIPSYWFCDGEADCVDSSD 2896
Query: 712 -------------KNKFRCDSGRCIASKLECNGENDCGDNSDE--------RNCGRTKAV 828
N+F CD+GRCI+S C+G+NDCGD SDE +NC T+
Sbjct: 2897 EPDTCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQNCSSTEFT 2956
Query: 829 CSRKYNP 849
C P
Sbjct: 2957 CINSRPP 2963
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 685 LCKIEEVDCK-NKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
LC E C ++FRCD+G CI CN +DC DNSDE+ CG
Sbjct: 3069 LCHTPEPTCPPHQFRCDNGHCIEMGTVCNHVDDCSDNSDEKGCG 3112
Score = 49.7 bits (117), Expect = 6e-06
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +1
Query: 631 GQPCTEPLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC 810
G P EP P++ C + F C++G+C+ S C+G +DC DNSDE C
Sbjct: 1014 GDPAREP--------PTQQCG------SSSFPCNNGKCVPSIFRCDGVDDCHDNSDEHQC 1059
Query: 811 GRTKAVCS 834
G CS
Sbjct: 1060 GALNNTCS 1067
Score = 49.3 bits (116), Expect = 8e-06
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +1
Query: 712 KNKFRCDSGRCIASKLECNGENDCGDNSDERNC 810
+++FRC +CI S+ C+ ENDCGDNSDER+C
Sbjct: 3763 ESEFRCADQQCIPSRWVCDQENDCGDNSDERDC 3795
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,311,968
Number of extensions: 1172288
Number of successful extensions: 3995
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3802
Number of HSP's successfully gapped: 44
Length of query: 487
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 382
Effective length of database: 12,463,779
Effective search space: 4761163578
Effective search space used: 4761163578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002891
(1461 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090918.1| complement component C6 [Sus scrofa]. 733 0.0
Alignment gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus... 506 e-143
Alignment gi|NP_001090917.1| complement component C9 [Sus scrofa]. 165 5e-41
Alignment gi|NP_001090920.1| complement component C8B [Sus scrofa]. 163 2e-40
Alignment gi|NP_001090919.1| complement component C8 alpha chain [Sus scr... 154 9e-38
Alignment gi|NP_999447.1| complement component C7 precursor [Sus scrofa]. 154 2e-37
Alignment gi|XP_003361084.1| PREDICTED: thrombospondin type-1 domain-cont... 60 2e-09
Alignment gi|XP_003357499.1| PREDICTED: thrombospondin type-1 domain-cont... 59 5e-09
Alignment gi|XP_003121319.2| PREDICTED: brain-specific angiogenesis inhib... 59 7e-09
Alignment gi|XP_003353287.1| PREDICTED: brain-specific angiogenesis inhib... 59 7e-09
>ref|NP_001090918.1| complement component C6 [Sus scrofa].
Length = 935
Score = 733 bits (1893), Expect = 0.0
Identities = 348/372 (93%), Positives = 348/372 (93%)
Frame = +1
Query: 292 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSG NQYYLDNF
Sbjct: 1 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGTQTRQRQITINQYYLDNF 60
Query: 472 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP
Sbjct: 61 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 120
Query: 652 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC
Sbjct: 121 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 180
Query: 832 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN
Sbjct: 181 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 240
Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFY AFK
Sbjct: 241 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYSSKKSQTSSHNSAFK 300
Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYS IFDD
Sbjct: 301 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSRIFDD 360
Query: 1372 FGTHYFHSGSLG 1407
FGTHYF SGSLG
Sbjct: 361 FGTHYFTSGSLG 372
>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
Length = 267
Score = 506 bits (1304), Expect = e-143
Identities = 231/249 (92%), Positives = 234/249 (93%)
Frame = +1
Query: 289 MMDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDN 468
MMD+HSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSG NQYYLDN
Sbjct: 1 MMDRHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGTQTRQRQITINQYYLDN 60
Query: 469 FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTE 648
FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSIL PNQFGGQPCTE
Sbjct: 61 FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTE 120
Query: 649 PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV 828
PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV
Sbjct: 121 PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV 180
Query: 829 CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENV 1008
CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENV
Sbjct: 181 CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENV 240
Query: 1009 NFEVQTKED 1035
+FE+ D
Sbjct: 241 DFEINGLSD 249
>ref|NP_001090917.1| complement component C9 [Sus scrofa].
Length = 543
Score = 165 bits (418), Expect = 5e-41
Identities = 97/329 (29%), Positives = 154/329 (46%), Gaps = 28/329 (8%)
Frame = +1
Query: 505 ECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSK 684
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + R C+P++
Sbjct: 33 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 92
Query: 685 LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT-KAVC-SRKYNPIPS 858
C+ E DC + F+C +GRCI +L CNG+NDCGD SDE +C + C R
Sbjct: 93 PCEDLEEDCGSDFQCGTGRCIKRRLLCNGDNDCGDFSDEDDCDSDPRPPCRERVVEESEL 152
Query: 859 VQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDD 1038
+ G G +IL +P N + G+C V+ +R P N+ + +E + + +
Sbjct: 153 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKV-DKN 211
Query: 1039 FQTDFYEDLIP--------------------------LENSKDQQATGFGQEKSSFHVPI 1140
F+T+++E I +E K + +E S+ P+
Sbjct: 212 FRTEYHERQIQVLKTIIEEKKSNFNADLTIKFTPTEAIEQLKSKNVELANEENSN---PM 268
Query: 1141 FYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALN 1320
+K + S KK+ F+ + VI + F M+ +D+ L+ FL +
Sbjct: 269 NNKAHFRFTYSKTETYKLLLSYSSKKEKIFLHVKGVIHLGRFVMRKRDVMLTKTFLDDVK 328
Query: 1321 HLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
+LP Y Y + +GTHY SGSLG
Sbjct: 329 YLPSTYEKGEYFAFLETYGTHYSSSGSLG 357
>ref|NP_001090920.1| complement component C8B [Sus scrofa].
Length = 611
Score = 163 bits (413), Expect = 2e-40
Identities = 98/318 (30%), Positives = 154/318 (48%), Gaps = 7/318 (2%)
Frame = +1
Query: 475 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 654
+ L ++TR + PI+C L + W+ CDPC +K+++ S+LRP+QF G+PC
Sbjct: 57 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNFSD 116
Query: 655 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 834
C+ ++ C+ +V C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 117 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 175
Query: 835 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 1014
++ + ++ + +G ++ G VL + + G C + FR P N+EN N
Sbjct: 176 QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACS--PHYILNTRFRKPYNVENFNP 233
Query: 1015 EVQTKEDDFQTDF--YEDLIPLENSKDQQATGFGQEKSSFHV-----PIFYXXXXXXXXX 1173
+ Q K D T++ Y D +Q T KSSF +F
Sbjct: 234 QTQGKYDFALTEYESYSDF-------EQNVTTAAISKSSFSFGFKISGMFEFGISSTSDK 286
Query: 1174 XXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALY 1353
+ + SH K S+F+ ++V + +K+++L L FL+ + LPLEY+ Y
Sbjct: 287 GKRFISRTKRFSHTK-STFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEY 345
Query: 1354 SPIFDDFGTHYFHSGSLG 1407
+F DFGTHY LG
Sbjct: 346 RDLFRDFGTHYITEAVLG 363
>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
Length = 589
Score = 154 bits (390), Expect = 9e-38
Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 28/321 (8%)
Frame = +1
Query: 529 INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
++C L ++ W++C PC +K+++ RS+L+PN+FGG C+ + C C + +
Sbjct: 40 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGAICSGNVWDQASCHSPTEC-LRQAQ 98
Query: 709 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 876
C F+C ++GRC+ L CNG+ DC D SDE +C + CS+ Y+PIP +
Sbjct: 99 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 157
Query: 877 GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 1005
G++IL E V + GG C+TV + + FR P N
Sbjct: 158 GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRNPYNFLK 217
Query: 1006 VNFEVQTKEDDFQTDFYED----LIPLENSKDQQA---TGFGQEKSSFHVPIFYXXXXXX 1164
+FE + F ++ Y+D L ++N K A G G S F +
Sbjct: 218 YHFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANV------GL 270
Query: 1165 XXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNA 1344
AF + ++K SFIRI ++ +F M+ ++ L +V L++L LP +YN
Sbjct: 271 SGSRESAFLNKLSTYNEKKYSFIRIFTKVQTASFMMRRDNIMLDEVMLQSLMELPEQYNY 330
Query: 1345 ALYSPIFDDFGTHYFHSGSLG 1407
+Y+ DD+GTHY SGS+G
Sbjct: 331 GMYAKFIDDYGTHYITSGSMG 351
>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
Length = 843
Score = 154 bits (388), Expect = 2e-37
Identities = 92/298 (30%), Positives = 144/298 (48%), Gaps = 4/298 (1%)
Frame = +1
Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
P+NC Y PWS+C+ C + Q + R + Q+GG PC + C P++ C EE
Sbjct: 25 PVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTRGCPTEE- 83
Query: 706 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
C +FRC SG+CI+ L CNG++DC D++DE C ++ C P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLS-KPPPNIELTGN 142
Query: 877 GFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFY 1056
G++ L G+ R VL GG C+ V S + +R+ N+ + F+V+ +DF +FY
Sbjct: 143 GYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRDFYRLSGNVLSYTFQVKV-NNDFNYEFY 201
Query: 1057 EDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIR 1236
+ T S V IF + + + KK +
Sbjct: 202 NSTWSYAKHTSTEHT----SSSKGRVFIF-----SSSSSSSSYYAKTYEILKKKSYQLLV 252
Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
+ ++V F + LQL++ F K L++LP Y+ + Y + D +GTHY SGSLG
Sbjct: 253 VQNTVEVAQFINNNPEFLQLAESFWKELSYLPPLYDYSAYRRLIDQYGTHYLQSGSLG 310
>ref|XP_003361084.1| PREDICTED: thrombospondin type-1 domain-containing protein 7A-like
[Sus scrofa].
Length = 640
Score = 60.5 bits (145), Expect = 2e-09
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
Frame = +1
Query: 355 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLCTKQETRECNW 516
CF +Y T WS+C + C +G + N +C+ L ++ NW
Sbjct: 213 CFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEK-----NW 267
Query: 517 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFR 666
Q CP+NC L D+ PWS+C K + R++ +P Q G+PC + +
Sbjct: 268 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSK 327
Query: 667 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
PC P K CK+++ C R + C+ S +D DE C
Sbjct: 328 PC-PVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSD---GSADDFSKVVDEEFCT 383
Query: 814 RTKAV 828
T+ +
Sbjct: 384 DTEPI 388
>ref|XP_003357499.1| PREDICTED: thrombospondin type-1 domain-containing protein 7A-like
[Sus scrofa].
Length = 995
Score = 59.3 bits (142), Expect = 5e-09
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
Frame = +1
Query: 355 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLCTKQETRECNW 516
CF +Y T WS+C + C +G + N +C+ L ++ NW
Sbjct: 575 CFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEK-----NW 629
Query: 517 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFR 666
Q CP+NC L D+ PWS+C K + R++ +P Q G+PC + +
Sbjct: 630 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSK 689
Query: 667 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
PC P K CK+++ C R + C+ S +D D+ C
Sbjct: 690 PC-PVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSD---GSADDFSKVVDDEFCT 745
Query: 814 RTKAV 828
T+ +
Sbjct: 746 DTEPI 750
>ref|XP_003121319.2| PREDICTED: brain-specific angiogenesis inhibitor 3-like isoform 1
[Sus scrofa].
Length = 1522
Score = 58.9 bits (141), Expect = 7e-09
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRACTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
V C N + S +C A+ +G ++C G ++ R C + + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECIANGQWN 459
>ref|XP_003353287.1| PREDICTED: brain-specific angiogenesis inhibitor 3-like isoform 2
[Sus scrofa].
Length = 1522
Score = 58.9 bits (141), Expect = 7e-09
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Frame = +1
Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRACTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
V C N + S +C A+ +G ++C G ++ R C + + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECIANGQWN 459
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,811,547
Number of extensions: 846150
Number of successful extensions: 2628
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2538
Number of HSP's successfully gapped: 18
Length of query: 487
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 384
Effective length of database: 8,779,541
Effective search space: 3371343744
Effective search space used: 3371343744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002891
(1461 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 406 e-110
>Sscrofa_Chr16
|| Length = 86898991
Score = 406 bits (205), Expect = e-110
Identities = 236/245 (96%), Gaps = 1/245 (0%)
Strand = Plus / Minus
Query: 1217 aggattccagttttattaggatccataaagtgataaaagtcttaaacttcacaatgaaaa 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27232824 aggattccagttttattaggatccataaagtgataaaagtcttaaacttcacaatgaaaa 27232765
Query: 1277 ctaaagatctgcagctttctgacgtctttttgaaagcacttaaccatctgcctctagaat 1336
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27232764 ctaaagatttgcagctttctgacgtctttttgaaagcacttaaccatctgcctctagaat 27232705
Query: 1337 acaacgctgctttgtacagcccgatatttgatgattttgggactcactattttcactctg 1396
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 27232704 acaacgctgctttgtacagccggatatttgatgattttgggactcactatttcacctctg 27232645
Query: 1397 gctccctggggaagcctgtacgaccttctctatcaatttagcaatgaggaactgaagaac 1456
||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 27232644 gctccct-gggaggcgtgtacgaccttctctatcagtttagcaatgaggaactgaagaac 27232586
Query: 1457 tcagg 1461
|||||
Sbjct: 27232585 tcagg 27232581
Score = 396 bits (200), Expect = e-107
Identities = 203/204 (99%)
Strand = Plus / Minus
Query: 1016 aggtacaaactaaagaagatgattttcaaacagatttctatgaggatttaattcctcttg 1075
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 27236983 aggtacaaactaaagaagatgattttgaaacagatttctatgaggatttaattcctcttg 27236924
Query: 1076 aaaatagtaaagatcaacaagccacaggtttcggccaagagaagagctcttttcatgtac 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27236923 aaaatagtaaagatcaacaagccacaggtttcggccaagagaagagctcttttcatgtac 27236864
Query: 1136 caattttttattcctcaaagaaaagccaaaccagcagccataattctgccttcaaacaag 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27236863 caattttttattcctcaaagaaaagccaaaccagcagccataattctgccttcaaacaag 27236804
Query: 1196 ctattcaagcctcccacaaaaagg 1219
||||||||||||||||||||||||
Sbjct: 27236803 ctattcaagcctcccacaaaaagg 27236780
Score = 327 bits (165), Expect = 1e-86
Identities = 168/169 (99%)
Strand = Plus / Minus
Query: 266 caggatctggagactctccaggcatgatggacaaacactctgtcttgtattttatcttgc 325
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 27256070 caggatctggagactctccaggcatgatggacagacactctgtcttgtattttatcttgc 27256011
Query: 326 tgagtggtctgattgacaagagccaagcctgtttctgtgatcactacccatggactcagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27256010 tgagtggtctgattgacaagagccaagcctgtttctgtgatcactacccatggactcagt 27255951
Query: 386 ggtccagctgctcaaaaacctgtaattctggaacccagaccagacagag 434
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27255950 ggtccagctgctcaaaaacctgtaattctggaacccagaccagacagag 27255902
Score = 315 bits (159), Expect = 4e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 433 agacaaattactataaatcagtactatcttgacaacttttgtgaccggctttgcaccaag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27254358 agacaaattactataaatcagtactatcttgacaacttttgtgaccggctttgcaccaag 27254299
Query: 493 caggagaccagagaatgtaactggcaaacttgtcctatcaattgcctcctgggagattat 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27254298 caggagaccagagaatgtaactggcaaacttgtcctatcaattgcctcctgggagattat 27254239
Query: 553 ggaccatggtcagattgtgacccttgtgttgaaaaacag 591
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27254238 ggaccatggtcagattgtgacccttgtgttgaaaaacag 27254200
Score = 289 bits (146), Expect = 2e-75
Identities = 149/150 (99%)
Strand = Plus / Minus
Query: 589 cagtttaaggttaggtccatcttgcgccccaatcagtttggaggacaaccatgtactgag 648
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 27252967 cagtttaaggttaggtccatcttgcaccccaatcagtttggaggacaaccatgtactgag 27252908
Query: 649 ccactcatgacctttcgaccatgtattccatctaaactctgcaaaattgaagaggttgac 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27252907 ccactcatgacctttcgaccatgtattccatctaaactctgcaaaattgaagaggttgac 27252848
Query: 709 tgcaagaataaattccgctgtgacagtggt 738
||||||||||||||||||||||||||||||
Sbjct: 27252847 tgcaagaataaattccgctgtgacagtggt 27252818
Score = 280 bits (141), Expect = 2e-72
Identities = 144/145 (99%)
Strand = Plus / Minus
Query: 736 ggtcgctgcattgccagcaagttggaatgcaatggagaaaatgattgtggagacaattcg 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27248597 ggtcgctgcattgccagcaagttggaatgcaatggagaaaatgattgtggagacaattca 27248538
Query: 796 gatgagaggaattgtgggagaacaaaagcagtatgctcacggaagtataatcccatccct 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27248537 gatgagaggaattgtgggagaacaaaagcagtatgctcacggaagtataatcccatccct 27248478
Query: 856 agtgtacagttgatgggcgctgggt 880
|||||||||||||||||||||||||
Sbjct: 27248477 agtgtacagttgatgggcgctgggt 27248453
Score = 278 bits (140), Expect = 8e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 1 gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262334 gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 27262275
Query: 61 tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262274 tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 27262215
Query: 121 ccctggataccacaaactgg 140
||||||||||||||||||||
Sbjct: 27262214 ccctggataccacaaactgg 27262195
Score = 278 bits (140), Expect = 8e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 1 gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139118 gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 52139059
Query: 61 tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139058 tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 52138999
Query: 121 ccctggataccacaaactgg 140
||||||||||||||||||||
Sbjct: 52138998 ccctggataccacaaactgg 52138979
Score = 270 bits (136), Expect = 2e-69
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 878 ggtttcatattctggcaggagagcccaggggagaagtcctaggtaattctttcactggag 937
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 27243065 ggtttcatattctggcaggagagcccagaggagaagtcctaggtaattctttcactggag 27243006
Query: 938 gaatatgtaaaaccgtcaaaagcagtaaagccagtaatccatttcgtgttccagccaatc 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27243005 gaatatgtaaaaccgtcaaaagcagtaaagccagtaatccatttcgtgttccagccaatc 27242946
Query: 998 tagaaaacgtcaactttgaggtac 1021
||||||||||| ||||||||||||
Sbjct: 27242945 tagaaaacgtcgactttgaggtac 27242922
Score = 248 bits (125), Expect = 7e-63
Identities = 128/129 (99%)
Strand = Plus / Minus
Query: 141 tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataaaagattcaaaata 200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 27261848 tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataagagattcaaaata 27261789
Query: 201 tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27261788 tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 27261729
Query: 261 cctgccagg 269
|||||||||
Sbjct: 27261728 cctgccagg 27261720
Score = 248 bits (125), Expect = 7e-63
Identities = 128/129 (99%)
Strand = Plus / Minus
Query: 141 tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataaaagattcaaaata 200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 52138632 tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataagagattcaaaata 52138573
Query: 201 tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52138572 tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 52138513
Query: 261 cctgccagg 269
|||||||||
Sbjct: 52138512 cctgccagg 52138504
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,543,022
Number of extensions: 556
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 11
Length of query: 1461
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1440
Effective length of database: 2,808,413,156
Effective search space: 4044114944640
Effective search space used: 4044114944640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)