Animal-Genome cDNA 20110601C-002891


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002891
         (1461 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039444.1| complement component C6 precursor [Bos tauru...   650   0.0  
Alignment   gi|NP_001039606.2| complement component 8, beta polypeptide [Bo...   160   4e-39
Alignment   gi|NP_001039431.1| complement component C7 precursor [Bos tauru...   160   4e-39
Alignment   gi|NP_001030441.1| complement component C9 precursor [Bos tauru...   150   4e-36
Alignment   gi|NP_001039750.1| complement component C8 alpha chain [Bos tau...   149   8e-36
Alignment   gi|NP_001193672.1| thrombospondin type-1 domain-containing prot...    57   4e-08
Alignment   gi|NP_001071311.1| low-density lipoprotein receptor-related pro...    57   5e-08
Alignment   gi|XP_002690044.1| PREDICTED: brain-specific angiogenesis inhib...    55   2e-07
Alignment   gi|XP_001789178.2| PREDICTED: brain-specific angiogenesis inhib...    55   2e-07
Alignment   gi|NP_777168.1| spondin-1 precursor [Bos taurus].                     54   4e-07

>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
          Length = 932

 Score =  650 bits (1677), Expect = 0.0
 Identities = 302/372 (81%), Positives = 326/372 (87%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            M +HSV+YFILLS LIDKSQACFCDHYPW+QWSSCSKTCNSG          ++YY +NF
Sbjct: 1    MARHSVMYFILLSALIDKSQACFCDHYPWSQWSSCSKTCNSGTQTRQRRIVTDKYYFENF 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            C +LCTKQE+RECNWQTCPINC LGDYGPWSDCDPCV+K+FKVRSILRP+QFGGQPCTEP
Sbjct: 61   CGQLCTKQESRECNWQTCPINCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            LMTF+PCIPSKLCKIEE+DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGR K VC
Sbjct: 121  LMTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRKKTVC 180

Query: 832  SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
            SR +NPIP VQLMG GFH LAGEPRGEVL NSFTGG+C+TVKSS+ASNP+RVPANLENVN
Sbjct: 181  SRSHNPIPGVQLMGMGFHFLAGEPRGEVLDNSFTGGVCRTVKSSRASNPYRVPANLENVN 240

Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
            FEVQTKEDD + DFY+DLIPLE++KDQ+A G G   SSF VPIFY            AFK
Sbjct: 241  FEVQTKEDDLEADFYDDLIPLEDNKDQEALGSGLATSSFRVPIFYSSKRSQSSSHSSAFK 300

Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
            QAIQAS KK SSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYN+ALYS IFDD
Sbjct: 301  QAIQASQKKASSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNSALYSRIFDD 360

Query: 1372 FGTHYFHSGSLG 1407
            FGTHYF SGSLG
Sbjct: 361  FGTHYFTSGSLG 372


>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
          Length = 590

 Score =  160 bits (404), Expect = 4e-39
 Identities = 97/317 (30%), Positives = 155/317 (48%), Gaps = 6/317 (1%)
 Frame = +1

Query: 475  DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 654
            + L   ++TR  +    PI+C L  +  W+ CDPC +K+++   ++RP+QF G+ C    
Sbjct: 45   ESLAKTRQTRSVDVTPLPIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSD 104

Query: 655  MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 834
                 C+ ++ C+  +V C+      +GRCI  +L CNG+NDCGD SDE NC +T   C 
Sbjct: 105  KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQ 163

Query: 835  RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 1014
            ++     ++  + +G ++      G VL + +  G+C        +  FR P N+E  NF
Sbjct: 164  QEMEQYWAIGSLASGINLFTNNLEGPVLDHRYYAGLCS--PHYILNTRFRKPYNVE--NF 219

Query: 1015 EVQTK-EDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHV-----PIFYXXXXXXXXXX 1176
              QT+ + DF    YE     E++     TG    +SSF +      IF           
Sbjct: 220  IPQTRGKYDFTLTEYESYSDFEHN----VTGTAISRSSFSLGFKIAGIFELGYSSMSNIG 275

Query: 1177 XXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYS 1356
                 +  + SH K S F+     ++V ++ +KT++L L   FL+ +  LPLEY+   Y 
Sbjct: 276  QHFISRIRRFSHTK-SKFLHARSDLEVAHYKLKTRNLMLHHEFLQRVKQLPLEYSYGEYR 334

Query: 1357 PIFDDFGTHYFHSGSLG 1407
             +F DFGTHY     LG
Sbjct: 335  DLFRDFGTHYITEAVLG 351


>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
          Length = 843

 Score =  160 bits (404), Expect = 4e-39
 Identities = 97/298 (32%), Positives = 147/298 (49%), Gaps = 4/298 (1%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            PINC  G Y PWS+C+ C + Q + RSI    Q+GG  C       +PC P++ C  E+ 
Sbjct: 25   PINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTRGCPTED- 83

Query: 706  DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
             C  +FRC SG+CI+  L CNG++DC  D +DE  C    ++  C  K  P P+++L G 
Sbjct: 84   GCGERFRCFSGQCISKSLVCNGDSDCEEDGADEDRCEDAESRPACD-KDKPPPNIELTGR 142

Query: 877  GFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFY 1056
            G++ L G+ R +VL     GG C+ V S    + +R+  N+ +  F+V+   +DF  +FY
Sbjct: 143  GYNALTGQFRNQVLNTKSFGGQCRKVYSGDGRDFYRLSGNILSYTFQVKI-NNDFNNEFY 201

Query: 1057 EDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIR 1236
                   NS          E SS     F             +    +  + KK    + 
Sbjct: 202  -------NSTWAYVKETSTEHSSSSKGRFLFFSSSSSSHGYSSNTNIL--TKKKSYQLLV 252

Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
            +   ++V  F     + LQL++ F K L++LP  Y+ + Y  + D +GTHY  SGSLG
Sbjct: 253  LQNTVEVAQFINNNPEFLQLAESFWKELSYLPSLYDYSAYRRLIDQYGTHYLQSGSLG 310


>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
          Length = 548

 Score =  150 bits (378), Expect = 4e-36
 Identities = 90/322 (27%), Positives = 151/322 (46%), Gaps = 28/322 (8%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            PI+C +  +  WS CDPC+++ F+ RSI    QF G+ C + +   + C+P++ C+  E 
Sbjct: 38   PIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNGRKCVDAVGDRQQCVPTEACEDPEE 97

Query: 706  DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGR-TKAVC-SRKYNPIPSVQLMGAG 879
             C N F+C +GRCI ++L CN +NDCGD SDE NC +  +  C +R        +  G G
Sbjct: 98   GCGNDFQCGTGRCIKNRLLCNEDNDCGDYSDEDNCEQDPRPPCRNRVVEESELARTAGFG 157

Query: 880  FHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYE 1059
             +IL  +P      N +  G+C  V        +R P N+ ++ ++ +  + +F+T+ +E
Sbjct: 158  INILGMDPLSTPFDNQYYNGLCDRVWDGNTLTYYRRPWNVASLTYDTKA-DKNFRTENHE 216

Query: 1060 DLIP-LENSKDQQATGFGQEKSSFHVPI-------FYXXXXXXXXXXXXAFKQAIQA--- 1206
            + I  L    +++   F    S  + P+                       K A +A   
Sbjct: 217  ESIQILRTIIEEKKLNFNAGLSVKYTPVEAIEKNKCVDLEHSDKGSTSSPSKLAAEAKFR 276

Query: 1207 ---------------SHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYN 1341
                           S K++  F+ +   + +  F M+++D+ L   FL ++N LP  Y 
Sbjct: 277  FTYSKDDIYRLLSSYSAKQEKMFLHVKGKVHLGRFVMRSRDVMLQTTFLDSINTLPTTYE 336

Query: 1342 AALYSPIFDDFGTHYFHSGSLG 1407
               Y    + +GTHY  SGSLG
Sbjct: 337  KGEYFAFLETYGTHYSSSGSLG 358


>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
          Length = 589

 Score =  149 bits (375), Expect = 8e-36
 Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 25/318 (7%)
 Frame = +1

Query: 529  INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
            ++C L ++  W+DC PC +K+++ RS+L+PN+FGG  C+  +     C     C + +  
Sbjct: 40   VSCQLDNWAEWTDCFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTAC-LSQAQ 98

Query: 709  CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 876
            C   F+C ++GRC+   L CNG+ DC D SDE +C   + +   CS+ Y+PIP  +    
Sbjct: 99   CGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRILENDCSQ-YDPIPGSEKAAL 157

Query: 877  GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 1005
            G++IL  E    V    + GG C+TV + +                     FR P N   
Sbjct: 158  GYNILTQEEAQHVYDARYYGGQCETVYNGEWRELQYDPACERLYYGDDDKYFRKPYNFLK 217

Query: 1006 VNFEVQTKEDDFQTDFYED----LIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXX 1173
             +FE Q  +    ++ Y D    L  ++N K   ++G         VP+           
Sbjct: 218  YHFEAQA-DTKISSEIYNDANDLLTKVKNDKSV-SSGLTIGVGIRGVPV--TVTAGVSMS 273

Query: 1174 XXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALY 1353
               AF + +   H+K  SF+RI   ++  +F M+ +++ L +  L++L  LP  Y+  +Y
Sbjct: 274  QDAAFLKKLSKYHEKKYSFMRIFTKVQTAHFKMRRENIVLDEGMLQSLMELPERYHYGMY 333

Query: 1354 SPIFDDFGTHYFHSGSLG 1407
            +   +D+GTHY  SGS+G
Sbjct: 334  AKFINDYGTHYITSGSMG 351


>ref|NP_001193672.1| thrombospondin type-1 domain-containing protein 7A [Bos taurus].
          Length = 1647

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 22/155 (14%)
 Frame = +1

Query: 355  CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLC---TKQETRE 507
            CF   Y  T WS+C  +    C +G          +     N  +C+ L    T Q    
Sbjct: 1209 CFHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEKTWQMNMS 1268

Query: 508  CNWQTCPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCI- 675
            C  + CP+NC L D+ PWS+C        K  + R++ +P Q  G+PC   +   +PC  
Sbjct: 1269 CMVE-CPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSKPCPV 1327

Query: 676  ---------PSKLCKIEEVDCKNKFRCDSGRCIAS 753
                     P   C++++  C    R  +  C+ S
Sbjct: 1328 KPCYQWRYGPWSACQVQDAQCGEGTRTRNISCVVS 1362


>ref|NP_001071311.1| low-density lipoprotein receptor-related protein 4 [Bos taurus].
          Length = 1905

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +1

Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
           GD+   SDC    PC   +F   S L  N   +  G    +     R C  S +C  E+ 
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-VCTAEQ- 274

Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
                FRC SGRC+     C+GE+DC DNSDE NC  T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307


>ref|XP_002690044.1| PREDICTED: brain-specific angiogenesis inhibitor 3, partial [Bos
           taurus].
          Length = 777

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
                C N  +  S  C A+    +G ++C G  ++ R C   +   + ++N
Sbjct: 411 QCSATCSNGTQQRSRLCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459


>ref|XP_001789178.2| PREDICTED: brain-specific angiogenesis inhibitor 3 [Bos taurus].
          Length = 1490

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
                C N  +  S  C A+    +G ++C G  ++ R C   +   + ++N
Sbjct: 411 QCSATCSNGTQQRSRLCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459


>ref|NP_777168.1| spondin-1 precursor [Bos taurus].
          Length = 807

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDYG 555
           W++WS CS TC  G              L    D     ++  +C    CPI+C L ++ 
Sbjct: 620 WSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEELEQVEKCMLPECPIDCELTEWS 675

Query: 556 PWSDCDPCVEK--QFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEE 702
            WS+C+    K    + R I    QFGG PC E        +  K C+I +
Sbjct: 676 QWSECNKSCGKGHMIRTRMIQMEPQFGGTPCPE-------TVQRKKCRIRK 719


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,671,496
Number of extensions: 1331356
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4040
Number of HSP's successfully gapped: 42
Length of query: 487
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 381
Effective length of database: 14,174,046
Effective search space: 5400311526
Effective search space used: 5400311526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002891
         (1461 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_868028.1| PREDICTED: similar to Complement component C6 p...   640   0.0  
Alignment   gi|XP_536488.2| PREDICTED: similar to Complement component C6 p...   640   0.0  
Alignment   gi|XP_536489.2| PREDICTED: similar to complement component 6 [C...   386   e-107
Alignment   gi|XP_536694.2| PREDICTED: similar to Complement component C8 b...   157   3e-38
Alignment   gi|XP_546339.2| PREDICTED: similar to complement component 7 pr...   150   4e-36
Alignment   gi|XP_536695.2| PREDICTED: similar to complement component 8, a...   140   3e-33
Alignment   gi|XP_536494.2| PREDICTED: similar to Complement component C9 p...   126   6e-29
Alignment   gi|XP_868034.1| PREDICTED: similar to complement component 7 pr...    97   5e-20
Alignment   gi|XP_867064.1| PREDICTED: similar to Brain-specific angiogenes...    57   3e-08
Alignment   gi|XP_867052.1| PREDICTED: similar to Brain-specific angiogenes...    57   3e-08

>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
            [Canis familiaris].
          Length = 936

 Score =  640 bits (1650), Expect = 0.0
 Identities = 301/374 (80%), Positives = 324/374 (86%), Gaps = 2/374 (0%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            M   S+LYFILLS LIDK Q CFCDHYPW+QWSSCSKTCN G          +QYYLDNF
Sbjct: 1    MAGQSILYFILLSALIDKCQPCFCDHYPWSQWSSCSKTCNFGTQSRQRKIVVDQYYLDNF 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            CD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSILRP+QFGGQPCTEP
Sbjct: 61   CDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            L+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERNCGR KAVC
Sbjct: 121  LVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVC 180

Query: 832  --SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLEN 1005
               R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVKSSKASNP+RVPANLEN
Sbjct: 181  PGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLEN 240

Query: 1006 VNFEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXA 1185
            VNFEVQTKEDD +TDFY+DLI L  +++QQ    G+E+SS ++PIFY            A
Sbjct: 241  VNFEVQTKEDDLETDFYKDLISLTKNENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSA 300

Query: 1186 FKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIF 1365
            FKQAIQASHKKDSSF RIHKVI+VLNFTMKTKDLQLSDVFLKALNHLPLEYN ALYS IF
Sbjct: 301  FKQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIF 360

Query: 1366 DDFGTHYFHSGSLG 1407
            DDFGTHY+ SGSLG
Sbjct: 361  DDFGTHYYTSGSLG 374


>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
            [Canis familiaris].
          Length = 936

 Score =  640 bits (1650), Expect = 0.0
 Identities = 301/374 (80%), Positives = 324/374 (86%), Gaps = 2/374 (0%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            M   S+LYFILLS LIDK Q CFCDHYPW+QWSSCSKTCN G          +QYYLDNF
Sbjct: 1    MAGQSILYFILLSALIDKCQPCFCDHYPWSQWSSCSKTCNFGTQSRQRKIVVDQYYLDNF 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            CD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSILRP+QFGGQPCTEP
Sbjct: 61   CDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            L+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERNCGR KAVC
Sbjct: 121  LVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVC 180

Query: 832  --SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLEN 1005
               R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVKSSKASNP+RVPANLEN
Sbjct: 181  PGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLEN 240

Query: 1006 VNFEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXA 1185
            VNFEVQTKEDD +TDFY+DLI L  +++QQ    G+E+SS ++PIFY            A
Sbjct: 241  VNFEVQTKEDDLETDFYKDLISLTKNENQQGLFGGEEQSSLYIPIFYSSKKTQSTTHNSA 300

Query: 1186 FKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIF 1365
            FKQAIQASHKKDSSF RIHKVI+VLNFTMKTKDLQLSDVFLKALNHLPLEYN ALYS IF
Sbjct: 301  FKQAIQASHKKDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIF 360

Query: 1366 DDFGTHYFHSGSLG 1407
            DDFGTHY+ SGSLG
Sbjct: 361  DDFGTHYYTSGSLG 374


>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
          Length = 2211

 Score =  386 bits (992), Expect = e-107
 Identities = 174/192 (90%), Positives = 184/192 (95%), Gaps = 2/192 (1%)
 Frame = +1

Query: 448  NQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQF 627
            +QYYLDNFCD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSILRP+QF
Sbjct: 30   DQYYLDNFCDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQF 89

Query: 628  GGQPCTEPLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERN 807
            GGQPCTEPL+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERN
Sbjct: 90   GGQPCTEPLVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERN 149

Query: 808  CGRTKAVC--SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPF 981
            CGR KAVC   R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVKSSKASNP+
Sbjct: 150  CGRAKAVCPGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPY 209

Query: 982  RVPANLENVNFE 1017
            RVPANLENVNFE
Sbjct: 210  RVPANLENVNFE 221



 Score =  117 bits (293), Expect = 3e-26
 Identities = 57/64 (89%), Positives = 60/64 (93%)
 Frame = +1

Query: 1216 KDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHS 1395
            +DSSF RIHKVI+VLNFTMKTKDLQLSDVFLKALNHLPLEYN ALYS IFDDFGTHY+ S
Sbjct: 221  EDSSFTRIHKVIEVLNFTMKTKDLQLSDVFLKALNHLPLEYNFALYSRIFDDFGTHYYTS 280

Query: 1396 GSLG 1407
            GSLG
Sbjct: 281  GSLG 284


>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
            (Complement component 8 beta subunit) [Canis familiaris].
          Length = 590

 Score =  157 bits (396), Expect = 3e-38
 Identities = 90/311 (28%), Positives = 144/311 (46%)
 Frame = +1

Query: 475  DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 654
            + L   ++TR  +    PI+C L  +  W+ CDPC +K+++  S+LRP+QF G+PC    
Sbjct: 45   ESLAKSRQTRSVDVTLMPIDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSD 104

Query: 655  MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 834
                 C+ S+ C+  +V C+      +GRC+  +L CNG+NDCGD SDE NC R    C 
Sbjct: 105  KEVEDCVTSRPCR-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQ 163

Query: 835  RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 1014
             +     ++  + +G ++      G VL + +  G C        +  FR P N+E+   
Sbjct: 164  HEMEQYWAIGRLASGVNLFTNSFEGPVLDHRYYAGGCS--PHYILNTRFRKPYNVESYTP 221

Query: 1015 EVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQ 1194
            + Q K   F    YE     E++  +           F +P  +             F  
Sbjct: 222  QTQGKY-KFALTAYESYSDFEHNITKTERSTSSFSFGFKIPEIFEFGISMASDNGKHFIS 280

Query: 1195 AIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDF 1374
             I+      S+F+     ++V ++ +K + L L   FL+ +  LPLEY+   Y  +F DF
Sbjct: 281  RIKRFSHTKSTFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKLLPLEYSYGEYRDLFRDF 340

Query: 1375 GTHYFHSGSLG 1407
            GTHY     LG
Sbjct: 341  GTHYITEAVLG 351


>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
            [Canis familiaris].
          Length = 863

 Score =  150 bits (378), Expect = 4e-36
 Identities = 88/298 (29%), Positives = 142/298 (47%), Gaps = 4/298 (1%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            P+NC    Y PWS+C+ C + Q   RS+    Q+GG PC       +PC P++ C  EE 
Sbjct: 25   PVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE- 83

Query: 706  DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
             C  +FRC SG+CI+  L CNG++DC  D++DE  C    ++  C     P P+++L G 
Sbjct: 84   GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLD-QPPPNIELTGN 142

Query: 877  GFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFY 1056
            G++ L G+ + +V+     GG C+ V S   +  +R+  N+ +  F+V+   +DF  +FY
Sbjct: 143  GYNELTGQFKNKVINTKSFGGQCRKVFSGDGNFFYRLSGNILSYTFQVKI-NNDFNYEFY 201

Query: 1057 EDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIR 1236
                        + T   ++ S F                        +    K+   + 
Sbjct: 202  NSSWSYVKHTSAEYTSSRKKSSLF---------SSSSSSSYNRISHTSKTHENKNHQLLI 252

Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
            +   ++V  F     + L L++ F K L+ LP  Y+ + Y  + D +GTHY  SGSLG
Sbjct: 253  VQNTVEVAQFVNNNPEFLHLAEPFWKELSLLPPLYDYSAYRRLIDQYGTHYLQSGSLG 310


>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
            precursor [Canis familiaris].
          Length = 589

 Score =  140 bits (353), Expect = 3e-33
 Identities = 89/322 (27%), Positives = 149/322 (46%), Gaps = 25/322 (7%)
 Frame = +1

Query: 517  QTCPIN---CLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKL 687
            Q+ PI    C L ++  W+DC PC +K+++ RS+L+P++FGG  C+  +     C     
Sbjct: 33   QSAPITAVPCQLSNWSEWTDCFPCQDKKYRYRSLLQPDKFGGTICSGDVWDQASCHSPTA 92

Query: 688  CKIEEVDCKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIP 855
            C + +  C   F+C ++GRC+   L CNG+ DC D SDE +C   +     CS+ Y PIP
Sbjct: 93   C-LHQAQCGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRVAENDCSQ-YEPIP 150

Query: 856  SVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFR 984
              +    G++IL  +    V    + GG C+TV + +                     FR
Sbjct: 151  GSESAALGYNILTQKEAQHVYDPRYYGGQCETVYNGEWREIRYDPTCERLYYGEDEKYFR 210

Query: 985  VPANLENVNFEVQTKEDDFQTDFYEDLIPLENS-KDQQATGFGQEKSSFHVPIFYXXXXX 1161
             P N    +FE    +  F ++ Y+D   L +  K+      G                 
Sbjct: 211  KPYNFLKYHFEALA-DTRFSSELYDDAHDLLSKVKNNNFVSTGVTVGVSFTGSSVTVDVG 269

Query: 1162 XXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYN 1341
                   +    ++  +KK  SF+R+   ++  +F M+  ++ L +  L++L  LP +YN
Sbjct: 270  VSSSQNSSSLDELKKYNKKKYSFLRVFTKVQTAHFKMRRGNIVLDEGMLQSLMELPEQYN 329

Query: 1342 AALYSPIFDDFGTHYFHSGSLG 1407
              +Y+   +D+GTHY  SGS+G
Sbjct: 330  YGMYAKFINDYGTHYITSGSMG 351


>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
            familiaris].
          Length = 589

 Score =  126 bits (316), Expect = 6e-29
 Identities = 96/340 (28%), Positives = 144/340 (42%), Gaps = 37/340 (10%)
 Frame = +1

Query: 499  TRECNWQTCPINCLLGDYGPWSDCDPCVEK------------QFKVRSILRPNQFGGQPC 642
            TRE N    P++C +  +  WS+CDPC+++            QF  RSI    QF GQ  
Sbjct: 41   TRE-NDTPFPVDCRMSSWSQWSECDPCLKQMVKILIFPAGFVQFPSRSIQVFRQFKGQKG 99

Query: 643  TEPLMTFRPCIPSKLCKIEEVDCKN-KFRCDSGRCIASKLECNGENDCGDNSDERNC-GR 816
               L       P   C   E D     F C +GRCI  +L CNG+NDCGD SDE +C   
Sbjct: 100  VAALGNRGHWDPGDPCAPGEEDWGGGDFGCRTGRCIKKRLLCNGDNDCGDFSDEDDCESD 159

Query: 817  TKAVCSRKY-NPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPA 993
             +  C  K        ++ G G +IL  EP      N +  G+C  V+       +R P 
Sbjct: 160  PRLPCREKVVEESELARMAGYGINILGMEPLSTPFDNEYYNGLCDRVRDGNTLVYYRRPW 219

Query: 994  NLENVNFEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQ-------------------- 1113
            N+ ++ +E +  + +F+T++YE+ I       Q+ T   +                    
Sbjct: 220  NVASLVYETKA-DKNFRTEYYEEQIESFKKIVQEKTSNFKADIALKLTPTEAIEKCKINP 278

Query: 1114 --EKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDL 1287
              E S     I               ++  +  S KK+  F+ +  VI +  F M+++D+
Sbjct: 279  EGEDSPRDSSINAESKFQFTYSKNEIYQLFLTHSSKKEKVFLHVKGVIHLGRFVMRSRDV 338

Query: 1288 QLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
             L+  FL  +  LP  Y    Y    + +GTHY  SGSLG
Sbjct: 339  MLTTTFLDDIKALPSTYEKGEYFAFLETYGTHYSSSGSLG 378


>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
           [Canis familiaris].
          Length = 143

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
 Frame = +1

Query: 526 PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
           P+NC    Y PWS+C+ C + Q   RS+    Q+GG PC       +PC P++ C  EE 
Sbjct: 25  PVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE- 83

Query: 706 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
            C  +FRC SG+CI+  L CNG++DC  D++DE  C    ++  C     P P+++L G 
Sbjct: 84  GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLD-QPPPNIELTGN 142

Query: 877 G 879
           G
Sbjct: 143 G 143


>ref|XP_867064.1| PREDICTED: similar to Brain-specific angiogenesis inhibitor 3
           precursor isoform 5 [Canis familiaris].
          Length = 1523

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSPWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
              V C N  +  S +C A+    +G ++C G  ++ R C   +   + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459


>ref|XP_867052.1| PREDICTED: similar to Brain-specific angiogenesis inhibitor 3
           precursor isoform 4 [Canis familiaris].
          Length = 984

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSPWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
              V C N  +  S +C A+    +G ++C G  ++ R C   +   + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,964,862
Number of extensions: 1371971
Number of successful extensions: 4255
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4122
Number of HSP's successfully gapped: 29
Length of query: 487
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 380
Effective length of database: 15,307,552
Effective search space: 5816869760
Effective search space used: 5816869760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002891
         (1461 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001108603.2| complement component C6 precursor [Homo sapi...   615   e-176
Alignment   gi|NP_000056.2| complement component C6 precursor [Homo sapiens].    615   e-176
Alignment   gi|NP_001728.1| complement component C9 precursor [Homo sapiens].    161   1e-39
Alignment   gi|NP_000578.2| complement component C7 precursor [Homo sapiens].    158   1e-38
Alignment   gi|NP_000553.1| complement component C8 alpha chain precursor [...   152   6e-37
Alignment   gi|NP_000057.1| complement component C8 beta chain preproprotei...   149   8e-36
Alignment   gi|NP_002325.2| low-density lipoprotein receptor-related protei...    57   3e-08
Alignment   gi|NP_001695.1| brain-specific angiogenesis inhibitor 3 precurs...    57   3e-08
Alignment   gi|NP_006099.2| spondin-1 precursor [Homo sapiens].                   56   1e-07
Alignment   gi|NP_056019.1| thrombospondin type-1 domain-containing protein...    56   1e-07

>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
          Length = 934

 Score =  615 bits (1585), Expect = e-176
 Identities = 286/372 (76%), Positives = 316/372 (84%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            M + SVLYFILL+ LI+K QACFCDHY WTQW+SCSKTCNSG          ++YY +NF
Sbjct: 1    MARRSVLYFILLNALINKGQACFCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENF 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            C+++C+KQETRECNWQ CPINCLLGD+GPWSDCDPC+EKQ KVRS+LRP+QFGGQPCT P
Sbjct: 61   CEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            L+ F+PCIPSKLCKIEE DCKNKFRCDSGRCIA KLECNGENDCGDNSDER+CGRTKAVC
Sbjct: 121  LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 180

Query: 832  SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
            +RKYNPIPSVQLMG GFH LAGEPRGEVL NSFTGGICKTVKSS+ SNP+RVPANLENV 
Sbjct: 181  TRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVG 240

Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
            FEVQT EDD +TDFY+DL  L ++++QQ +   Q  SSF VPIFY            AFK
Sbjct: 241  FEVQTAEDDLKTDFYKDLTSLGHNENQQGSFSSQGGSSFSVPIFYSSKRSENINHNSAFK 300

Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
            QAIQASHKKDSSFIRIHKV+KVLNFT K KDL LSDVFLKALNHLPLEYN+ALYS IFDD
Sbjct: 301  QAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDD 360

Query: 1372 FGTHYFHSGSLG 1407
            FGTHYF SGSLG
Sbjct: 361  FGTHYFTSGSLG 372


>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
          Length = 934

 Score =  615 bits (1585), Expect = e-176
 Identities = 286/372 (76%), Positives = 316/372 (84%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            M + SVLYFILL+ LI+K QACFCDHY WTQW+SCSKTCNSG          ++YY +NF
Sbjct: 1    MARRSVLYFILLNALINKGQACFCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENF 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            C+++C+KQETRECNWQ CPINCLLGD+GPWSDCDPC+EKQ KVRS+LRP+QFGGQPCT P
Sbjct: 61   CEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            L+ F+PCIPSKLCKIEE DCKNKFRCDSGRCIA KLECNGENDCGDNSDER+CGRTKAVC
Sbjct: 121  LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 180

Query: 832  SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
            +RKYNPIPSVQLMG GFH LAGEPRGEVL NSFTGGICKTVKSS+ SNP+RVPANLENV 
Sbjct: 181  TRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVG 240

Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
            FEVQT EDD +TDFY+DL  L ++++QQ +   Q  SSF VPIFY            AFK
Sbjct: 241  FEVQTAEDDLKTDFYKDLTSLGHNENQQGSFSSQGGSSFSVPIFYSSKRSENINHNSAFK 300

Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
            QAIQASHKKDSSFIRIHKV+KVLNFT K KDL LSDVFLKALNHLPLEYN+ALYS IFDD
Sbjct: 301  QAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSRIFDD 360

Query: 1372 FGTHYFHSGSLG 1407
            FGTHYF SGSLG
Sbjct: 361  FGTHYFTSGSLG 372


>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
          Length = 559

 Score =  161 bits (408), Expect = 1e-39
 Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 25/329 (7%)
 Frame = +1

Query: 496  ETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCI 675
            E  E +     I+C +  +  WS CDPC+ + F+ RSI    QF G+ CT+ +   R C+
Sbjct: 30   ELTESSGSASHIDCRMSPWSEWSQCDPCLRQMFRSRSIEVFGQFNGKRCTDAVGDRRQCV 89

Query: 676  PSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC-GRTKAVC-SRKYNP 849
            P++ C+  E DC N F+C +GRCI  +L CNG+NDCGD SDE +C    +  C  R    
Sbjct: 90   PTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCESEPRPPCRDRVVEE 149

Query: 850  IPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTK 1029
                +  G G +IL  +P      N F  G+C   +       +R P N+ ++ +E +  
Sbjct: 150  SELARTAGYGINILGMDPLSTPFDNEFYNGLCNRDRDGNTLTYYRRPWNVASLIYETKG- 208

Query: 1030 EDDFQTDFYEDLI-----------------------PLENSKDQQATGFGQEKSSFHVPI 1140
            E +F+T+ YE+ I                       P E +K +Q      E+++  + +
Sbjct: 209  EKNFRTEHYEEQIEAFKSIIQEKTSNFNAAISLKFTPTETNKAEQCC----EETASSISL 264

Query: 1141 FYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALN 1320
                           ++  +  S KK+  F+ +   I +  F M+ +D+ L+  F+  + 
Sbjct: 265  HGKGSFRFSYSKNETYQLFLSYSSKKEKMFLHVKGEIHLGRFVMRNRDVVLTTTFVDDIK 324

Query: 1321 HLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
             LP  Y    Y    + +GTHY  SGSLG
Sbjct: 325  ALPTTYEKGEYFAFLETYGTHYSSSGSLG 353


>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
          Length = 843

 Score =  158 bits (400), Expect = 1e-38
 Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 4/302 (1%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            P+NC    Y PWS+C+ C + Q + RS+    Q+GGQPC       + C P++ C  EE 
Sbjct: 25   PVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGCPTEE- 83

Query: 706  DCKNKFRCDSGRCIASKLECNGENDCG-DNSDERNCGRTKAVCSRKYN-PIPSVQLMGAG 879
             C  +FRC SG+CI+  L CNG++DC  D++DE  C  ++   S   + P P+++L G G
Sbjct: 84   GCGERFRCFSGQCISKSLVCNGDSDCDEDSADEDRCEDSERRPSCDIDKPPPNIELTGNG 143

Query: 880  FHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYE 1059
            ++ L G+ R  V+     GG C+ V S    + +R+  N+ +  F+V+   +DF  +FY 
Sbjct: 144  YNELTGQFRNRVINTKSFGGQCRKVFSGDGKDFYRLSGNVLSYTFQVKI-NNDFNYEFYN 202

Query: 1060 DLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHK-KDSSFIR 1236
                       + T   +++S F                  ++       HK K    + 
Sbjct: 203  STWSYVKHTSTEHTSSSRKRSFFR----------SSSSSSRSYTSHTNEIHKGKSYQLLV 252

Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLGKP 1413
            +   ++V  F     + LQL++ F K L+HLP  Y+ + Y  + D +GTHY  SGSLG  
Sbjct: 253  VENTVEVAQFINNNPEFLQLAEPFWKELSHLPSLYDYSAYRRLIDQYGTHYLQSGSLGGE 312

Query: 1414 VR 1419
             R
Sbjct: 313  YR 314


>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
          Length = 584

 Score =  152 bits (385), Expect = 6e-37
 Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 22/315 (6%)
 Frame = +1

Query: 529  INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
            + C L ++  W+DC PC +K+++ RS+L+PN+FGG  C+  +     C  S  C + +  
Sbjct: 37   VTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTC-VRQAQ 95

Query: 709  CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 876
            C   F+C ++GRC+   L CNG+ DC D SDE +C   +A+   CS+ Y PIP  Q    
Sbjct: 96   CGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ-YEPIPGSQKAAL 154

Query: 877  GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 1005
            G++IL  E    V   S+ GG C+TV + +                     FR P N   
Sbjct: 155  GYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLK 214

Query: 1006 VNFEVQTKEDDFQTDFYEDLIPLENS-KDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXX 1182
             +FE    +    ++FY++   L +  K  ++  FG                        
Sbjct: 215  YHFEALA-DTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDT 273

Query: 1183 AFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPI 1362
            +F   +   ++K   F RI   ++  +F M+  D+ L +  L++L  LP +YN  +Y+  
Sbjct: 274  SFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKF 333

Query: 1363 FDDFGTHYFHSGSLG 1407
             +D+GTHY  SGS+G
Sbjct: 334  INDYGTHYITSGSMG 348


>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
          Length = 591

 Score =  149 bits (375), Expect = 8e-36
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 1/306 (0%)
 Frame = +1

Query: 493  QETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPC 672
            ++ R  +    PI+C L  +  W+ CDPC +K+++   +L+P+QF G+PC         C
Sbjct: 51   RQMRSVDVTLMPIDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDC 110

Query: 673  IPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPI 852
            + ++ C   +V C+      +GRC+  +L CNG+NDCGD SDE NC R    C  + +  
Sbjct: 111  VTNRPCG-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQY 169

Query: 853  PSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKE 1032
              +  + +G ++      G VL + +  G C        +  FR P N+E+   + Q K 
Sbjct: 170  WGIGSLASGINLFTNSFEGPVLDHRYYAGGCS--PHYILNTRFRKPYNVESYTPQTQGKY 227

Query: 1033 DDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVP-IFYXXXXXXXXXXXXAFKQAIQAS 1209
             +F    YE     E +  ++          F +P IF               ++  + S
Sbjct: 228  -EFILKEYESYSDFERNVTEKMASKSGFSFGFKIPGIFELGISSQSDRGKHYIRRTKRFS 286

Query: 1210 HKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYF 1389
            H K S F+     ++V ++ +K + L L   FL+ +  LPLEY+   Y  +F DFGTHY 
Sbjct: 287  HTK-SVFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKRLPLEYSYGEYRDLFRDFGTHYI 345

Query: 1390 HSGSLG 1407
                LG
Sbjct: 346  TEAVLG 351


>ref|NP_002325.2| low-density lipoprotein receptor-related protein 4 precursor [Homo
           sapiens].
          Length = 1905

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +1

Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
           GD+   SDC    PC   +F   S L  N   +  G    +     R C  S +C  E+ 
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274

Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
                FRC SGRC+     C+GE+DC DNSDE NC  T
Sbjct: 275 -----FRCHSGRCVRLSWRCDGEDDCADNSDEENCENT 307


>ref|NP_001695.1| brain-specific angiogenesis inhibitor 3 precursor [Homo sapiens].
          Length = 1522

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
              V C N  +  S +C A+    +G ++C G  ++ R C   +   + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459


>ref|NP_006099.2| spondin-1 precursor [Homo sapiens].
          Length = 807

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
 Frame = +1

Query: 373 PWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDY 552
           PW++WS CS TC  G              L    D     ++  +C    CPI+C L ++
Sbjct: 619 PWSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEDLEQVEKCMLPECPIDCELTEW 674

Query: 553 GPWSDCDPCVEK--QFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEE 702
             WS+C+    K    + R I    QFGG PC E        +  K C+I +
Sbjct: 675 SQWSECNKSCGKGHVIRTRMIQMEPQFGGAPCPE-------TVQRKKCRIRK 719


>ref|NP_056019.1| thrombospondin type-1 domain-containing protein 7A precursor [Homo
            sapiens].
          Length = 1657

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 29/193 (15%)
 Frame = +1

Query: 361  CDHYPW--TQWSSCSKT----CNSGXXXXXXXXXXNQ-YYLD-NFCDRLCTKQETRECNW 516
            C HY +  T WS+C  +    C +G          +    +D  +C+ L  ++     NW
Sbjct: 1219 CYHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVDLKYCEALGLEK-----NW 1273

Query: 517  QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFR 666
            Q        CP+NC L D+ PWS+C        K  + R++ +P Q  G+PC   +   +
Sbjct: 1274 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPSLMDQSK 1333

Query: 667  PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
            PC P K            C+++E  C    R  +  C+ S       +D     DE  C 
Sbjct: 1334 PC-PVKPCYRWQYGQWSPCQVQEAQCGEGTRTRNISCVVSD---GSADDFSKVVDEEFCA 1389

Query: 814  RTKAVCSRKYNPI 852
              + +     N +
Sbjct: 1390 DIELIIDGNKNMV 1402


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,145,375
Number of extensions: 1367307
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 4165
Number of HSP's successfully gapped: 29
Length of query: 487
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 380
Effective length of database: 14,770,016
Effective search space: 5612606080
Effective search space used: 5612606080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002891
         (1461 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057913.2| complement component 6 [Mus musculus].               578   e-165
Alignment   gi|NP_001230766.1| complement component C7 [Mus musculus].           160   3e-39
Alignment   gi|NP_038513.1| complement component C9 [Mus musculus].              151   1e-36
Alignment   gi|NP_666260.1| complement component C8 alpha chain precursor [...   146   5e-35
Alignment   gi|NP_598643.1| complement component C8 beta chain precursor [M...   142   9e-34
Alignment   gi|NP_663559.1| spondin-1 precursor [Mus musculus].                   57   3e-08
Alignment   gi|NP_783573.4| brain-specific angiogenesis inhibitor 3 precurs...    57   3e-08
Alignment   gi|NP_001139329.1| low-density lipoprotein receptor-related pro...    57   4e-08
Alignment   gi|NP_766256.3| low-density lipoprotein receptor-related protei...    57   4e-08
Alignment   gi|NP_001074557.1| low-density lipoprotein receptor-related pro...    55   1e-07

>ref|NP_057913.2| complement component 6 [Mus musculus].
          Length = 769

 Score =  578 bits (1490), Expect = e-165
 Identities = 269/372 (72%), Positives = 301/372 (80%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            M +H  L FILL  LIDKS+ACFCDHYPWT WSSCSK+CNSG          N YY  N 
Sbjct: 1    MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            CD+LC KQETRECN QTCPINC+LGDYG WSDCDPC EKQ KV+S+LRP+QFGGQPCTEP
Sbjct: 61   CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            L+TF+PC+PSKLCKIEE +CKNKF CDSGRCI SKLECNGENDCGDNSDERNCGRTK VC
Sbjct: 121  LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC 180

Query: 832  SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
            +R Y PIPSVQLMG GFH LAGEPRGEVL NSFTGGICK VK+S+ASNP+RV ANLENVN
Sbjct: 181  TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN 240

Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
            FEVQT EDD +T+FY++LI  E +K++ +    +    F +PIF+            AF 
Sbjct: 241  FEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFN 300

Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
            + I+ASHKKDSSFIRIHK+IKVLNFTMK  DLQLSDVFLKAL HLPLEYN+A+YS IFDD
Sbjct: 301  KVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDD 360

Query: 1372 FGTHYFHSGSLG 1407
            FGTHYF SGSLG
Sbjct: 361  FGTHYFTSGSLG 372


>ref|NP_001230766.1| complement component C7 [Mus musculus].
          Length = 845

 Score =  160 bits (404), Expect = 3e-39
 Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 3/301 (0%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            P+NC    YGPWS+C+ C + Q + RS+    Q+GG PC       + C P + C  EE 
Sbjct: 25   PVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPERGCPTEE- 83

Query: 706  DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYNPIPSVQLMGAGF 882
             C ++FRC SG+CI+  L CNG+ DC  D +DE  C            P P+++L G G+
Sbjct: 84   GCGDRFRCFSGQCISKSLVCNGDPDCEEDGADEDKCENVANPSCNIDKPPPNIELTGYGY 143

Query: 883  HILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYED 1062
            +++ G+ +  V+     GG C+ V S    + +R+  N+ +  F+V+  ++DF  +FY  
Sbjct: 144  NVVTGQGKKRVINTKSFGGQCRKVFSGDGKDFYRLSGNILSYTFQVKV-DNDFNYEFYNS 202

Query: 1063 LIP-LENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRI 1239
                ++++  +Q T +  +    H    Y            + K+ I  +  K    + +
Sbjct: 203  SWSYIKHTSTEQNTFYSWKGLFSHSRNTY---------GHGSAKEEID-TKMKSYKLLVV 252

Query: 1240 HKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLGKPV 1416
               ++V  FT    + LQ+++ F K L+HLP  Y+ + Y  + D +GTHY  SGSLG   
Sbjct: 253  QNTVEVAQFTNNNPEFLQVAEPFWKELSHLPTLYDYSAYRRLIDQYGTHYLQSGSLGGEY 312

Query: 1417 R 1419
            R
Sbjct: 313  R 313


>ref|NP_038513.1| complement component C9 [Mus musculus].
          Length = 561

 Score =  151 bits (382), Expect = 1e-36
 Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 23/317 (7%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            PI+C +  +  WS+CDPC++++F+ RSIL   QF G+ C + L   + C P++ C+  + 
Sbjct: 51   PIDCRMSPWSNWSECDPCLKQRFRSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQE 110

Query: 706  DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT-KAVCSRKYNPIPSVQLM-GAG 879
            +C N F+C++GRCI  +L CNG+NDCGD SDE +C    +  C  +      + L  G G
Sbjct: 111  NCGNDFQCETGRCIKRRLLCNGDNDCGDYSDENDCDDDPRTPCRDRVAEESELGLTAGYG 170

Query: 880  FHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFYE 1059
             +IL  EP      N F  G+C  V+  K    +R P N+ ++ +E +  +  F+T+ Y+
Sbjct: 171  INILGMEPLRTPFDNEFYNGLCDRVRDEKTY--YRKPWNVVSLIYETKA-DKSFRTENYD 227

Query: 1060 DLIPLENSKDQQAT-------------------GFGQEKSSFHV--PIFYXXXXXXXXXX 1176
            + + +  + +++ T                   G G+   + H   P             
Sbjct: 228  EHLEVFKAINREKTSNFNADFALKFSATEVPEKGAGEVSPAEHSSKPTNISAKFKFSYFM 287

Query: 1177 XXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYS 1356
               F++      +    F+ +  V+++  F M+ +D+ L   FL  +  LP  Y    Y 
Sbjct: 288  GKNFRRLSSYFSQSKKMFVHLRGVVQLGRFVMRNRDVVLRSTFLDDVKALPTSYEKGEYF 347

Query: 1357 PIFDDFGTHYFHSGSLG 1407
               + +GTHY  SGSLG
Sbjct: 348  GFLETYGTHYSTSGSLG 364


>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
          Length = 587

 Score =  146 bits (368), Expect = 5e-35
 Identities = 88/320 (27%), Positives = 149/320 (46%), Gaps = 27/320 (8%)
 Frame = +1

Query: 529  INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
            ++C L D+  W+DC PC +K+++ RS+L+P++FGG  C+  +     C     C + +  
Sbjct: 37   VSCQLSDWYKWTDCFPCQDKKYRYRSLLQPSKFGGTICSGDIWDEASCDSPTPC-LRQAQ 95

Query: 709  CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS--RKYNPIPSVQLMGAG 879
            C   F+C ++GRC+   L CNG+NDC D SDE +C   +       +Y PIP  +    G
Sbjct: 96   CGQDFQCRETGRCLKRHLVCNGDNDCLDGSDESDCEDVRVTEDDCHQYEPIPGSERAALG 155

Query: 880  FHILAGEPRGEVLGNSFTGGICKTVKSS-----------------KASNPFRVPANLENV 1008
            ++IL  E    V    + GG C+TV +                  +    FR P N    
Sbjct: 156  YNILTQEEAQSVYDAKYYGGQCETVYNGDWRKLRYDPTCERLYYGEDEKYFRKPYNFLKY 215

Query: 1009 NFEVQTKEDDFQTDFYED----LIPLENSKDQQA---TGFGQEKSSFHVPIFYXXXXXXX 1167
            +FE    +    ++FY+D       ++N K   A    G    KS   + +         
Sbjct: 216  HFEALA-DTSISSEFYDDANDLFFHIKNGKSHSAGVTVGVAPVKSPVSIEV------TGS 268

Query: 1168 XXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAA 1347
                 +F   +   ++K   F+R+   I+   F M+  ++ L +  L++L  LP ++N  
Sbjct: 269  GSKASSFLNKLNKYNEKRYGFMRVSTKIQTAQFKMRRNNIVLDEGMLQSLMELPEQFNYG 328

Query: 1348 LYSPIFDDFGTHYFHSGSLG 1407
            +Y+   +D+GTHY  SG++G
Sbjct: 329  MYAKFINDYGTHYITSGTMG 348


>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
          Length = 589

 Score =  142 bits (357), Expect = 9e-34
 Identities = 86/295 (29%), Positives = 136/295 (46%), Gaps = 1/295 (0%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            PI+C L  +  W+ CDPC +K+++   +LRP+QF G+ C         C+ ++ C+  +V
Sbjct: 61   PIDCELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCR-SQV 119

Query: 706  DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPIPSVQLMGAGFH 885
             C+      +GRC+  +L CNG+NDCGD SDE NC R    C R+     ++  + +G +
Sbjct: 120  RCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKNCQREMEQYWAIDRLASGIN 179

Query: 886  ILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTK-EDDFQTDFYED 1062
            +      G VL + +  G C           FR P N+E  ++  QTK E +F    YE 
Sbjct: 180  LFTNTFEGPVLDHRYYAGGCS--PHYILDTNFRKPYNVE--SYTPQTKCEYEFTLTEYES 235

Query: 1063 LIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIH 1242
                E    ++ T      S F V                 +    +      S F+   
Sbjct: 236  YSDFERLVIEKKTHMFNFTSGFKVDGVMDLGIKVESNEGKNYVTRTKRFAHTQSKFLHAR 295

Query: 1243 KVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
             V++V ++ +K++ L L   FL+ +  LPLEY+   Y  +  DFGTH+     LG
Sbjct: 296  SVLEVAHYKLKSRSLMLHYEFLQRVKSLPLEYSYGEYRDLLRDFGTHFITEAVLG 350


>ref|NP_663559.1| spondin-1 precursor [Mus musculus].
          Length = 807

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +1

Query: 373 PWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDY 552
           PW++WS CS TC  G              L    D     ++  +C    CPI+C L ++
Sbjct: 619 PWSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEDLEQAEKCMLPECPIDCELSEW 674

Query: 553 GPWSDCDPCVEK--QFKVRSILRPNQFGGQPCTE 648
             WS+C+    K    + R+I    QFGG PC E
Sbjct: 675 SQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPE 708


>ref|NP_783573.4| brain-specific angiogenesis inhibitor 3 precursor [Mus musculus].
          Length = 1522

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSACSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
              V C N  +  S +C A+    +G ++C G  ++ R C   +   + ++N
Sbjct: 411 HCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459


>ref|NP_001139329.1| low-density lipoprotein receptor-related protein 4 isoform 2 [Mus
           musculus].
          Length = 519

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +1

Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
           GD+   SDC    PC   +F   S L  N   +  G    +     R C  S +C  E+ 
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINSGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274

Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
                FRC SGRC+     C+GE+DC DNSDE NC  T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307


>ref|NP_766256.3| low-density lipoprotein receptor-related protein 4 isoform 1 [Mus
           musculus].
          Length = 1905

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +1

Query: 544 GDYGPWSDCD---PCVEKQFKVRSILRPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
           GD+   SDC    PC   +F   S L  N   +  G    +     R C  S +C  E+ 
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINSGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274

Query: 706 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 819
                FRC SGRC+     C+GE+DC DNSDE NC  T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307


>ref|NP_001074557.1| low-density lipoprotein receptor-related protein 2 precursor [Mus
            musculus].
          Length = 4660

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 42/127 (33%), Positives = 51/127 (40%), Gaps = 26/127 (20%)
 Frame = +1

Query: 547  DYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVDC----- 711
            D G  SD +P        RS    N+F    C  P      CIPS      E DC     
Sbjct: 2848 DCGDGSDENPIYCASHTCRS----NEF---QCVSP----HRCIPSYWFCDGEADCVDSSD 2896

Query: 712  -------------KNKFRCDSGRCIASKLECNGENDCGDNSDE--------RNCGRTKAV 828
                          N+F CD+GRCI+S   C+G+NDCGD SDE        +NC  T+  
Sbjct: 2897 EPDTCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQNCSSTEFT 2956

Query: 829  CSRKYNP 849
            C     P
Sbjct: 2957 CINSRPP 2963



 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 685  LCKIEEVDCK-NKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
            LC   E  C  ++FRCD+G CI     CN  +DC DNSDE+ CG
Sbjct: 3069 LCHTPEPTCPPHQFRCDNGHCIEMGTVCNHVDDCSDNSDEKGCG 3112



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +1

Query: 631  GQPCTEPLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC 810
            G P  EP        P++ C        + F C++G+C+ S   C+G +DC DNSDE  C
Sbjct: 1014 GDPAREP--------PTQQCG------SSSFPCNNGKCVPSIFRCDGVDDCHDNSDEHQC 1059

Query: 811  GRTKAVCS 834
            G     CS
Sbjct: 1060 GALNNTCS 1067



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +1

Query: 712  KNKFRCDSGRCIASKLECNGENDCGDNSDERNC 810
            +++FRC   +CI S+  C+ ENDCGDNSDER+C
Sbjct: 3763 ESEFRCADQQCIPSRWVCDQENDCGDNSDERDC 3795


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,311,968
Number of extensions: 1172288
Number of successful extensions: 3995
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3802
Number of HSP's successfully gapped: 44
Length of query: 487
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 382
Effective length of database: 12,463,779
Effective search space: 4761163578
Effective search space used: 4761163578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002891
         (1461 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001090918.1| complement component C6 [Sus scrofa].             733   0.0  
Alignment   gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus...   506   e-143
Alignment   gi|NP_001090917.1| complement component C9 [Sus scrofa].             165   5e-41
Alignment   gi|NP_001090920.1| complement component C8B [Sus scrofa].            163   2e-40
Alignment   gi|NP_001090919.1| complement component C8 alpha chain [Sus scr...   154   9e-38
Alignment   gi|NP_999447.1| complement component C7 precursor [Sus scrofa].      154   2e-37
Alignment   gi|XP_003361084.1| PREDICTED: thrombospondin type-1 domain-cont...    60   2e-09
Alignment   gi|XP_003357499.1| PREDICTED: thrombospondin type-1 domain-cont...    59   5e-09
Alignment   gi|XP_003121319.2| PREDICTED: brain-specific angiogenesis inhib...    59   7e-09
Alignment   gi|XP_003353287.1| PREDICTED: brain-specific angiogenesis inhib...    59   7e-09

>ref|NP_001090918.1| complement component C6 [Sus scrofa].
          Length = 935

 Score =  733 bits (1893), Expect = 0.0
 Identities = 348/372 (93%), Positives = 348/372 (93%)
 Frame = +1

Query: 292  MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 471
            MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSG          NQYYLDNF
Sbjct: 1    MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGTQTRQRQITINQYYLDNF 60

Query: 472  CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 651
            CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP
Sbjct: 61   CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 120

Query: 652  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 831
            LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC
Sbjct: 121  LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 180

Query: 832  SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 1011
            SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN
Sbjct: 181  SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVN 240

Query: 1012 FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFK 1191
            FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFY            AFK
Sbjct: 241  FEVQTKEDDFQTDFYEDLIPLENSKDQQATGFGQEKSSFHVPIFYSSKKSQTSSHNSAFK 300

Query: 1192 QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSPIFDD 1371
            QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYS IFDD
Sbjct: 301  QAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALYSRIFDD 360

Query: 1372 FGTHYFHSGSLG 1407
            FGTHYF SGSLG
Sbjct: 361  FGTHYFTSGSLG 372


>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
          Length = 267

 Score =  506 bits (1304), Expect = e-143
 Identities = 231/249 (92%), Positives = 234/249 (93%)
 Frame = +1

Query: 289  MMDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDN 468
            MMD+HSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSG          NQYYLDN
Sbjct: 1    MMDRHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGTQTRQRQITINQYYLDN 60

Query: 469  FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTE 648
            FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSIL PNQFGGQPCTE
Sbjct: 61   FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTE 120

Query: 649  PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV 828
            PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV
Sbjct: 121  PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV 180

Query: 829  CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENV 1008
            CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENV
Sbjct: 181  CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENV 240

Query: 1009 NFEVQTKED 1035
            +FE+    D
Sbjct: 241  DFEINGLSD 249


>ref|NP_001090917.1| complement component C9 [Sus scrofa].
          Length = 543

 Score =  165 bits (418), Expect = 5e-41
 Identities = 97/329 (29%), Positives = 154/329 (46%), Gaps = 28/329 (8%)
 Frame = +1

Query: 505  ECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSK 684
            +CN    PI+C +  +G WS CDPC+++ F+ RSI    QF GQ C + +   R C+P++
Sbjct: 33   DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 92

Query: 685  LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT-KAVC-SRKYNPIPS 858
             C+  E DC + F+C +GRCI  +L CNG+NDCGD SDE +C    +  C  R       
Sbjct: 93   PCEDLEEDCGSDFQCGTGRCIKRRLLCNGDNDCGDFSDEDDCDSDPRPPCRERVVEESEL 152

Query: 859  VQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDD 1038
             +  G G +IL  +P      N +  G+C  V+       +R P N+  + +E +  + +
Sbjct: 153  ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKV-DKN 211

Query: 1039 FQTDFYEDLIP--------------------------LENSKDQQATGFGQEKSSFHVPI 1140
            F+T+++E  I                           +E  K +      +E S+   P+
Sbjct: 212  FRTEYHERQIQVLKTIIEEKKSNFNADLTIKFTPTEAIEQLKSKNVELANEENSN---PM 268

Query: 1141 FYXXXXXXXXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALN 1320
                           +K  +  S KK+  F+ +  VI +  F M+ +D+ L+  FL  + 
Sbjct: 269  NNKAHFRFTYSKTETYKLLLSYSSKKEKIFLHVKGVIHLGRFVMRKRDVMLTKTFLDDVK 328

Query: 1321 HLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
            +LP  Y    Y    + +GTHY  SGSLG
Sbjct: 329  YLPSTYEKGEYFAFLETYGTHYSSSGSLG 357


>ref|NP_001090920.1| complement component C8B [Sus scrofa].
          Length = 611

 Score =  163 bits (413), Expect = 2e-40
 Identities = 98/318 (30%), Positives = 154/318 (48%), Gaps = 7/318 (2%)
 Frame = +1

Query: 475  DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPL 654
            + L   ++TR  +    PI+C L  +  W+ CDPC +K+++  S+LRP+QF G+PC    
Sbjct: 57   ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNFSD 116

Query: 655  MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 834
                 C+ ++ C+  +V C+      +GRCI  +L CNG+NDCGD SDE NC R    C 
Sbjct: 117  KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 175

Query: 835  RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNF 1014
            ++ +   ++  + +G ++      G VL + +  G C        +  FR P N+EN N 
Sbjct: 176  QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGACS--PHYILNTRFRKPYNVENFNP 233

Query: 1015 EVQTKEDDFQTDF--YEDLIPLENSKDQQATGFGQEKSSFHV-----PIFYXXXXXXXXX 1173
            + Q K D   T++  Y D        +Q  T     KSSF        +F          
Sbjct: 234  QTQGKYDFALTEYESYSDF-------EQNVTTAAISKSSFSFGFKISGMFEFGISSTSDK 286

Query: 1174 XXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNAALY 1353
                  +  + SH K S+F+     ++V  + +K+++L L   FL+ +  LPLEY+   Y
Sbjct: 287  GKRFISRTKRFSHTK-STFLHARSDLEVARYKLKSRNLMLHYEFLQRVKQLPLEYSYGEY 345

Query: 1354 SPIFDDFGTHYFHSGSLG 1407
              +F DFGTHY     LG
Sbjct: 346  RDLFRDFGTHYITEAVLG 363


>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
          Length = 589

 Score =  154 bits (390), Expect = 9e-38
 Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 28/321 (8%)
 Frame = +1

Query: 529  INCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 708
            ++C L ++  W++C PC +K+++ RS+L+PN+FGG  C+  +     C     C + +  
Sbjct: 40   VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGAICSGNVWDQASCHSPTEC-LRQAQ 98

Query: 709  CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 876
            C   F+C ++GRC+   L CNG+ DC D SDE +C   +     CS+ Y+PIP  +    
Sbjct: 99   CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQ-YDPIPGSERATL 157

Query: 877  GFHILAGEPRGEVLGNSFTGGICKTVKSSK-----------------ASNPFRVPANLEN 1005
            G++IL  E    V    + GG C+TV + +                     FR P N   
Sbjct: 158  GYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRNPYNFLK 217

Query: 1006 VNFEVQTKEDDFQTDFYED----LIPLENSKDQQA---TGFGQEKSSFHVPIFYXXXXXX 1164
             +FE    +  F ++ Y+D    L  ++N K   A    G G   S F   +        
Sbjct: 218  YHFEALA-DSKFSSESYDDANDLLKKVKNEKSVSAGVTVGIGPTGSPFTANV------GL 270

Query: 1165 XXXXXXAFKQAIQASHKKDSSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNA 1344
                  AF   +   ++K  SFIRI   ++  +F M+  ++ L +V L++L  LP +YN 
Sbjct: 271  SGSRESAFLNKLSTYNEKKYSFIRIFTKVQTASFMMRRDNIMLDEVMLQSLMELPEQYNY 330

Query: 1345 ALYSPIFDDFGTHYFHSGSLG 1407
             +Y+   DD+GTHY  SGS+G
Sbjct: 331  GMYAKFIDDYGTHYITSGSMG 351


>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
          Length = 843

 Score =  154 bits (388), Expect = 2e-37
 Identities = 92/298 (30%), Positives = 144/298 (48%), Gaps = 4/298 (1%)
 Frame = +1

Query: 526  PINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 705
            P+NC    Y PWS+C+ C + Q + R +    Q+GG PC       + C P++ C  EE 
Sbjct: 25   PVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTRGCPTEE- 83

Query: 706  DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 876
             C  +FRC SG+CI+  L CNG++DC  D++DE  C    ++  C     P P+++L G 
Sbjct: 84   GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLS-KPPPNIELTGN 142

Query: 877  GFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDDFQTDFY 1056
            G++ L G+ R  VL     GG C+ V S    + +R+  N+ +  F+V+   +DF  +FY
Sbjct: 143  GYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRDFYRLSGNVLSYTFQVKV-NNDFNYEFY 201

Query: 1057 EDLIPLENSKDQQATGFGQEKSSFHVPIFYXXXXXXXXXXXXAFKQAIQASHKKDSSFIR 1236
                        + T      S   V IF              + +  +   KK    + 
Sbjct: 202  NSTWSYAKHTSTEHT----SSSKGRVFIF-----SSSSSSSSYYAKTYEILKKKSYQLLV 252

Query: 1237 IHKVIKVLNFTMKTKD-LQLSDVFLKALNHLPLEYNAALYSPIFDDFGTHYFHSGSLG 1407
            +   ++V  F     + LQL++ F K L++LP  Y+ + Y  + D +GTHY  SGSLG
Sbjct: 253  VQNTVEVAQFINNNPEFLQLAESFWKELSYLPPLYDYSAYRRLIDQYGTHYLQSGSLG 310


>ref|XP_003361084.1| PREDICTED: thrombospondin type-1 domain-containing protein 7A-like
           [Sus scrofa].
          Length = 640

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
 Frame = +1

Query: 355 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLCTKQETRECNW 516
           CF  +Y  T WS+C  +    C +G          +     N  +C+ L  ++     NW
Sbjct: 213 CFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEK-----NW 267

Query: 517 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFR 666
           Q        CP+NC L D+ PWS+C        K  + R++ +P Q  G+PC   +   +
Sbjct: 268 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSK 327

Query: 667 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
           PC P K            CK+++  C    R  +  C+ S       +D     DE  C 
Sbjct: 328 PC-PVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSD---GSADDFSKVVDEEFCT 383

Query: 814 RTKAV 828
            T+ +
Sbjct: 384 DTEPI 388


>ref|XP_003357499.1| PREDICTED: thrombospondin type-1 domain-containing protein 7A-like
            [Sus scrofa].
          Length = 995

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
 Frame = +1

Query: 355  CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLCTKQETRECNW 516
            CF  +Y  T WS+C  +    C +G          +     N  +C+ L  ++     NW
Sbjct: 575  CFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEK-----NW 629

Query: 517  QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILRPNQFGGQPCTEPLMTFR 666
            Q        CP+NC L D+ PWS+C        K  + R++ +P Q  G+PC   +   +
Sbjct: 630  QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSK 689

Query: 667  PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 813
            PC P K            CK+++  C    R  +  C+ S       +D     D+  C 
Sbjct: 690  PC-PVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSD---GSADDFSKVVDDEFCT 745

Query: 814  RTKAV 828
             T+ +
Sbjct: 746  DTEPI 750


>ref|XP_003121319.2| PREDICTED: brain-specific angiogenesis inhibitor 3-like isoform 1
           [Sus scrofa].
          Length = 1522

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRACTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
              V C N  +  S +C A+    +G ++C G  ++ R C   + + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECIANGQWN 459


>ref|XP_003353287.1| PREDICTED: brain-specific angiogenesis inhibitor 3-like isoform 2
           [Sus scrofa].
          Length = 1522

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
 Frame = +1

Query: 376 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 552
           W+QWS+CS TC  G                  C      +E+R C N   CP++ +  ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351

Query: 553 GPWSDCD-PCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 699
            PWS C   C   Q        P Q+GG+PC  P    +PC    LC ++          
Sbjct: 352 SPWSLCSFTCGRGQRTRTRACTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410

Query: 700 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 846
              V C N  +  S +C A+    +G ++C G  ++ R C   + + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECIANGQWN 459


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,811,547
Number of extensions: 846150
Number of successful extensions: 2628
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2538
Number of HSP's successfully gapped: 18
Length of query: 487
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 384
Effective length of database: 8,779,541
Effective search space: 3371343744
Effective search space used: 3371343744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002891
         (1461 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr16                                                         406   e-110

>Sscrofa_Chr16 
||          Length = 86898991

 Score =  406 bits (205), Expect = e-110
 Identities = 236/245 (96%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1217     aggattccagttttattaggatccataaagtgataaaagtcttaaacttcacaatgaaaa 1276
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27232824 aggattccagttttattaggatccataaagtgataaaagtcttaaacttcacaatgaaaa 27232765

                                                                            
Query: 1277     ctaaagatctgcagctttctgacgtctttttgaaagcacttaaccatctgcctctagaat 1336
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27232764 ctaaagatttgcagctttctgacgtctttttgaaagcacttaaccatctgcctctagaat 27232705

                                                                            
Query: 1337     acaacgctgctttgtacagcccgatatttgatgattttgggactcactattttcactctg 1396
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||
Sbjct: 27232704 acaacgctgctttgtacagccggatatttgatgattttgggactcactatttcacctctg 27232645

                                                                            
Query: 1397     gctccctggggaagcctgtacgaccttctctatcaatttagcaatgaggaactgaagaac 1456
                ||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 27232644 gctccct-gggaggcgtgtacgaccttctctatcagtttagcaatgaggaactgaagaac 27232586

                     
Query: 1457     tcagg 1461
                |||||
Sbjct: 27232585 tcagg 27232581



 Score =  396 bits (200), Expect = e-107
 Identities = 203/204 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1016     aggtacaaactaaagaagatgattttcaaacagatttctatgaggatttaattcctcttg 1075
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 27236983 aggtacaaactaaagaagatgattttgaaacagatttctatgaggatttaattcctcttg 27236924

                                                                            
Query: 1076     aaaatagtaaagatcaacaagccacaggtttcggccaagagaagagctcttttcatgtac 1135
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27236923 aaaatagtaaagatcaacaagccacaggtttcggccaagagaagagctcttttcatgtac 27236864

                                                                            
Query: 1136     caattttttattcctcaaagaaaagccaaaccagcagccataattctgccttcaaacaag 1195
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27236863 caattttttattcctcaaagaaaagccaaaccagcagccataattctgccttcaaacaag 27236804

                                        
Query: 1196     ctattcaagcctcccacaaaaagg 1219
                ||||||||||||||||||||||||
Sbjct: 27236803 ctattcaagcctcccacaaaaagg 27236780



 Score =  327 bits (165), Expect = 1e-86
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                            
Query: 266      caggatctggagactctccaggcatgatggacaaacactctgtcttgtattttatcttgc 325
                ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 27256070 caggatctggagactctccaggcatgatggacagacactctgtcttgtattttatcttgc 27256011

                                                                            
Query: 326      tgagtggtctgattgacaagagccaagcctgtttctgtgatcactacccatggactcagt 385
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27256010 tgagtggtctgattgacaagagccaagcctgtttctgtgatcactacccatggactcagt 27255951

                                                                 
Query: 386      ggtccagctgctcaaaaacctgtaattctggaacccagaccagacagag 434
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27255950 ggtccagctgctcaaaaacctgtaattctggaacccagaccagacagag 27255902



 Score =  315 bits (159), Expect = 4e-83
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                            
Query: 433      agacaaattactataaatcagtactatcttgacaacttttgtgaccggctttgcaccaag 492
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27254358 agacaaattactataaatcagtactatcttgacaacttttgtgaccggctttgcaccaag 27254299

                                                                            
Query: 493      caggagaccagagaatgtaactggcaaacttgtcctatcaattgcctcctgggagattat 552
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27254298 caggagaccagagaatgtaactggcaaacttgtcctatcaattgcctcctgggagattat 27254239

                                                       
Query: 553      ggaccatggtcagattgtgacccttgtgttgaaaaacag 591
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 27254238 ggaccatggtcagattgtgacccttgtgttgaaaaacag 27254200



 Score =  289 bits (146), Expect = 2e-75
 Identities = 149/150 (99%)
 Strand = Plus / Minus

                                                                            
Query: 589      cagtttaaggttaggtccatcttgcgccccaatcagtttggaggacaaccatgtactgag 648
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 27252967 cagtttaaggttaggtccatcttgcaccccaatcagtttggaggacaaccatgtactgag 27252908

                                                                            
Query: 649      ccactcatgacctttcgaccatgtattccatctaaactctgcaaaattgaagaggttgac 708
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27252907 ccactcatgacctttcgaccatgtattccatctaaactctgcaaaattgaagaggttgac 27252848

                                              
Query: 709      tgcaagaataaattccgctgtgacagtggt 738
                ||||||||||||||||||||||||||||||
Sbjct: 27252847 tgcaagaataaattccgctgtgacagtggt 27252818



 Score =  280 bits (141), Expect = 2e-72
 Identities = 144/145 (99%)
 Strand = Plus / Minus

                                                                            
Query: 736      ggtcgctgcattgccagcaagttggaatgcaatggagaaaatgattgtggagacaattcg 795
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 27248597 ggtcgctgcattgccagcaagttggaatgcaatggagaaaatgattgtggagacaattca 27248538

                                                                            
Query: 796      gatgagaggaattgtgggagaacaaaagcagtatgctcacggaagtataatcccatccct 855
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27248537 gatgagaggaattgtgggagaacaaaagcagtatgctcacggaagtataatcccatccct 27248478

                                         
Query: 856      agtgtacagttgatgggcgctgggt 880
                |||||||||||||||||||||||||
Sbjct: 27248477 agtgtacagttgatgggcgctgggt 27248453



 Score =  278 bits (140), Expect = 8e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262334 gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 27262275

                                                                            
Query: 61       tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262274 tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 27262215

                                    
Query: 121      ccctggataccacaaactgg 140
                ||||||||||||||||||||
Sbjct: 27262214 ccctggataccacaaactgg 27262195



 Score =  278 bits (140), Expect = 8e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139118 gatcgctgggacatgaccttgggttagctagcagtggggaaaaaagacttgtttggatta 52139059

                                                                            
Query: 61       tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139058 tcctataagccctcttcattgtgaataactattattttcttagccatttgcagattagtt 52138999

                                    
Query: 121      ccctggataccacaaactgg 140
                ||||||||||||||||||||
Sbjct: 52138998 ccctggataccacaaactgg 52138979



 Score =  270 bits (136), Expect = 2e-69
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                            
Query: 878      ggtttcatattctggcaggagagcccaggggagaagtcctaggtaattctttcactggag 937
                |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 27243065 ggtttcatattctggcaggagagcccagaggagaagtcctaggtaattctttcactggag 27243006

                                                                            
Query: 938      gaatatgtaaaaccgtcaaaagcagtaaagccagtaatccatttcgtgttccagccaatc 997
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27243005 gaatatgtaaaaccgtcaaaagcagtaaagccagtaatccatttcgtgttccagccaatc 27242946

                                        
Query: 998      tagaaaacgtcaactttgaggtac 1021
                ||||||||||| ||||||||||||
Sbjct: 27242945 tagaaaacgtcgactttgaggtac 27242922



 Score =  248 bits (125), Expect = 7e-63
 Identities = 128/129 (99%)
 Strand = Plus / Minus

                                                                            
Query: 141      tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataaaagattcaaaata 200
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 27261848 tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataagagattcaaaata 27261789

                                                                            
Query: 201      tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 260
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27261788 tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 27261729

                         
Query: 261      cctgccagg 269
                |||||||||
Sbjct: 27261728 cctgccagg 27261720



 Score =  248 bits (125), Expect = 7e-63
 Identities = 128/129 (99%)
 Strand = Plus / Minus

                                                                            
Query: 141      tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataaaagattcaaaata 200
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 52138632 tttcttgagcttctggagcaggtacagaaggaaaaaataagaaataagagattcaaaata 52138573

                                                                            
Query: 201      tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 260
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52138572 tttacaagaagatggaaaggaggatcctacagttgggaacaaactagagaatcttctgaa 52138513

                         
Query: 261      cctgccagg 269
                |||||||||
Sbjct: 52138512 cctgccagg 52138504


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,543,022
Number of extensions: 556
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 11
Length of query: 1461
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1440
Effective length of database: 2,808,413,156
Effective search space: 4044114944640
Effective search space used: 4044114944640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)