Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002892
(951 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039444.1| complement component C6 precursor [Bos tauru... 419 e-122
Alignment gi|NP_001039431.1| complement component C7 precursor [Bos tauru... 117 1e-26
Alignment gi|NP_001030441.1| complement component C9 precursor [Bos tauru... 112 5e-25
Alignment gi|NP_001039606.2| complement component 8, beta polypeptide [Bo... 110 2e-24
Alignment gi|NP_001039750.1| complement component C8 alpha chain [Bos tau... 105 6e-23
Alignment gi|NP_001071311.1| low-density lipoprotein receptor-related pro... 57 3e-08
Alignment gi|NP_001193672.1| thrombospondin type-1 domain-containing prot... 57 3e-08
Alignment gi|XP_002690044.1| PREDICTED: brain-specific angiogenesis inhib... 54 2e-07
Alignment gi|XP_001789178.2| PREDICTED: brain-specific angiogenesis inhib... 54 2e-07
Alignment gi|NP_777168.1| spondin-1 precursor [Bos taurus]. 54 3e-07
>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
Length = 932
Score = 419 bits (1078), Expect(2) = e-122
Identities = 183/222 (82%), Positives = 199/222 (89%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
M +HSV+YFILLS LIDKSQACFCDHYPW+QWSSCSKTCNSG ++YY +NF
Sbjct: 1 MARHSVMYFILLSALIDKSQACFCDHYPWSQWSSCSKTCNSGTQTRQRRIVTDKYYFENF 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
C +LCTKQE+RECNWQTCPINC LGDYGPWSDCDPCV+K+FKVRSIL P+QFGGQPCTEP
Sbjct: 61 CGQLCTKQESRECNWQTCPINCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
LMTF+PCIPSKLCKIEE+DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGR K VC
Sbjct: 121 LMTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRKKTVC 180
Query: 741 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
SR +NPIP VQLMG GFH LAGEPRGEVL NSFTGG+C+TVK
Sbjct: 181 SRSHNPIPGVQLMGMGFHFLAGEPRGEVLDNSFTGGVCRTVK 222
Score = 38.9 bits (89), Expect(2) = e-122
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 865 KAVKASNQFRGSAHLENVNFVVQTKEED 948
K+ +ASN +R A+LENVNF VQTKE+D
Sbjct: 222 KSSRASNPYRVPANLENVNFEVQTKEDD 249
>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
Length = 843
Score = 117 bits (293), Expect = 1e-26
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
PINC G Y PWS+C+ C + Q + RSI Q+GG C +PC P++ C E+
Sbjct: 25 PINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTRGCPTED- 83
Query: 615 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 785
C +FRC SG+CI+ L CNG++DC D +DE C ++ C K P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDGADEDRCEDAESRPACD-KDKPPPNIELTGR 142
Query: 786 GFHILAGEPRGEVLGNSFTGGICKTV 863
G++ L G+ R +VL GG C+ V
Sbjct: 143 GYNALTGQFRNQVLNTKSFGGQCRKV 168
>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
Length = 548
Score = 112 bits (280), Expect = 5e-25
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
PI+C + + WS CDPC+++ F+ RSI QF G+ C + + + C+P++ C+ E
Sbjct: 38 PIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNGRKCVDAVGDRQQCVPTEACEDPEE 97
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGR-TKAVC-SRKYNPIPSVQLMGAG 788
C N F+C +GRCI ++L CN +NDCGD SDE NC + + C +R + G G
Sbjct: 98 GCGNDFQCGTGRCIKNRLLCNEDNDCGDYSDEDNCEQDPRPPCRNRVVEESELARTAGFG 157
Query: 789 FHILAGEPRGEVLGNSFTGGICKTV 863
+IL +P N + G+C V
Sbjct: 158 INILGMDPLSTPFDNQYYNGLCDRV 182
>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
Length = 590
Score = 110 bits (274), Expect = 2e-24
Identities = 48/157 (30%), Positives = 84/157 (53%)
Frame = +3
Query: 384 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPL 563
+ L ++TR + PI+C L + W+ CDPC +K+++ ++ P+QF G+ C
Sbjct: 45 ESLAKTRQTRSVDVTPLPIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSD 104
Query: 564 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 743
C+ ++ C+ +V C+ +GRCI +L CNG+NDCGD SDE NC +T C
Sbjct: 105 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQ 163
Query: 744 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGIC 854
++ ++ + +G ++ G VL + + G+C
Sbjct: 164 QEMEQYWAIGSLASGINLFTNNLEGPVLDHRYYAGLC 200
>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
Length = 589
Score = 105 bits (262), Expect = 6e-23
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Frame = +3
Query: 438 INCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 617
++C L ++ W+DC PC +K+++ RS+L PN+FGG C+ + C C + +
Sbjct: 40 VSCQLDNWAEWTDCFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTAC-LSQAQ 98
Query: 618 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 785
C F+C ++GRC+ L CNG+ DC D SDE +C + + CS +Y+PIP +
Sbjct: 99 CGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRILENDCS-QYDPIPGSEKAAL 157
Query: 786 GFHILAGEPRGEVLGNSFTGGICKTV 863
G++IL E V + GG C+TV
Sbjct: 158 GYNILTQEEAQHVYDARYYGGQCETV 183
>ref|NP_001071311.1| low-density lipoprotein receptor-related protein 4 [Bos taurus].
Length = 1905
Score = 56.6 bits (135), Expect = 3e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +3
Query: 453 GDYGPWSDCD---PCVEKQFKVRSILHPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-VCTAEQ- 274
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 728
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307
>ref|NP_001193672.1| thrombospondin type-1 domain-containing protein 7A [Bos taurus].
Length = 1647
Score = 56.6 bits (135), Expect = 3e-08
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
Frame = +3
Query: 264 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLC---TKQETRE 416
CF Y T WS+C + C +G + N +C+ L T Q
Sbjct: 1209 CFHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEKTWQMNMS 1268
Query: 417 CNWQTCPINCLLGDYGPWSDCDP---CVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCI- 584
C + CP+NC L D+ PWS+C K + R++ P Q G+PC + +PC
Sbjct: 1269 CMVE-CPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSKPCPV 1327
Query: 585 ---------PSKLCKIEEVDCKNKFRCDSGRCIAS 662
P C++++ C R + C+ S
Sbjct: 1328 KPCYQWRYGPWSACQVQDAQCGEGTRTRNISCVVS 1362
>ref|XP_002690044.1| PREDICTED: brain-specific angiogenesis inhibitor 3, partial [Bos
taurus].
Length = 777
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
C N + S C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSATCSNGTQQRSRLCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|XP_001789178.2| PREDICTED: brain-specific angiogenesis inhibitor 3 [Bos taurus].
Length = 1490
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
C N + S C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSATCSNGTQQRSRLCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|NP_777168.1| spondin-1 precursor [Bos taurus].
Length = 807
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDYG 464
W++WS CS TC G L D ++ +C CPI+C L ++
Sbjct: 620 WSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEELEQVEKCMLPECPIDCELTEWS 675
Query: 465 PWSDCDPCVEK--QFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEE 611
WS+C+ K + R I QFGG PC E + K C+I +
Sbjct: 676 QWSECNKSCGKGHMIRTRMIQMEPQFGGTPCPE-------TVQRKKCRIRK 719
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,993,648
Number of extensions: 979947
Number of successful extensions: 3275
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3122
Number of HSP's successfully gapped: 51
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002892
(951 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868028.1| PREDICTED: similar to Complement component C6 p... 417 e-122
Alignment gi|XP_536488.2| PREDICTED: similar to Complement component C6 p... 417 e-122
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 346 1e-97
Alignment gi|XP_536694.2| PREDICTED: similar to Complement component C8 b... 111 9e-25
Alignment gi|XP_546339.2| PREDICTED: similar to complement component 7 pr... 110 1e-24
Alignment gi|XP_536695.2| PREDICTED: similar to complement component 8, a... 102 7e-22
Alignment gi|XP_868034.1| PREDICTED: similar to complement component 7 pr... 97 3e-20
Alignment gi|XP_536494.2| PREDICTED: similar to Complement component C9 p... 84 1e-16
Alignment gi|XP_540748.2| PREDICTED: similar to Low-density lipoprotein r... 57 3e-08
Alignment gi|XP_867064.1| PREDICTED: similar to Brain-specific angiogenes... 57 3e-08
>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
[Canis familiaris].
Length = 936
Score = 417 bits (1071), Expect(2) = e-122
Identities = 187/224 (83%), Positives = 198/224 (88%), Gaps = 2/224 (0%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
M S+LYFILLS LIDK Q CFCDHYPW+QWSSCSKTCN G +QYYLDNF
Sbjct: 1 MAGQSILYFILLSALIDKCQPCFCDHYPWSQWSSCSKTCNFGTQSRQRKIVVDQYYLDNF 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
CD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSIL P+QFGGQPCTEP
Sbjct: 61 CDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
L+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERNCGR KAVC
Sbjct: 121 LVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVC 180
Query: 741 --SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVK
Sbjct: 181 PGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVK 224
Score = 40.8 bits (94), Expect(2) = e-122
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNFVVQTKEED 948
K K+ KASN +R A+LENVNF VQTKE+D
Sbjct: 221 KTVKSSKASNPYRVPANLENVNFEVQTKEDD 251
>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
[Canis familiaris].
Length = 936
Score = 417 bits (1071), Expect(2) = e-122
Identities = 187/224 (83%), Positives = 198/224 (88%), Gaps = 2/224 (0%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
M S+LYFILLS LIDK Q CFCDHYPW+QWSSCSKTCN G +QYYLDNF
Sbjct: 1 MAGQSILYFILLSALIDKCQPCFCDHYPWSQWSSCSKTCNFGTQSRQRKIVVDQYYLDNF 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
CD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSIL P+QFGGQPCTEP
Sbjct: 61 CDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
L+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERNCGR KAVC
Sbjct: 121 LVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVC 180
Query: 741 --SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVK
Sbjct: 181 PGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVK 224
Score = 40.8 bits (94), Expect(2) = e-122
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNFVVQTKEED 948
K K+ KASN +R A+LENVNF VQTKE+D
Sbjct: 221 KTVKSSKASNPYRVPANLENVNFEVQTKEDD 251
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 346 bits (888), Expect(2) = 1e-97
Identities = 154/172 (89%), Positives = 163/172 (94%), Gaps = 2/172 (1%)
Frame = +3
Query: 357 NQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQF 536
+QYYLDNFCD+LCTK ETRECNWQ CPINCLLGDYGPWSDCDPCVEKQFKVRSIL P+QF
Sbjct: 30 DQYYLDNFCDQLCTKSETRECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQF 89
Query: 537 GGQPCTEPLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERN 716
GGQPCTEPL+TF+PCIPSKLCKIEE+DCKNKFRCDSGRCIA+KLECNGENDCGDNSDERN
Sbjct: 90 GGQPCTEPLVTFQPCIPSKLCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERN 149
Query: 717 CGRTKAVC--SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
CGR KAVC R++NPIPSVQLMGAGFH LAGEPRGEVL NSFTGGICKTVK
Sbjct: 150 CGRAKAVCPGKRQWNPIPSVQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVK 201
Score = 29.3 bits (64), Expect(2) = 1e-97
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNF 924
K K+ KASN +R A+LENVNF
Sbjct: 198 KTVKSSKASNPYRVPANLENVNF 220
>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
(Complement component 8 beta subunit) [Canis
familiaris].
Length = 590
Score = 111 bits (278), Expect = 9e-25
Identities = 51/157 (32%), Positives = 83/157 (52%)
Frame = +3
Query: 384 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPL 563
+ L ++TR + PI+C L + W+ CDPC +K+++ S+L P+QF G+PC
Sbjct: 45 ESLAKSRQTRSVDVTLMPIDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSD 104
Query: 564 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 743
C+ S+ C+ +V C+ +GRC+ +L CNG+NDCGD SDE NC R C
Sbjct: 105 KEVEDCVTSRPCR-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQ 163
Query: 744 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGIC 854
+ ++ + +G ++ G VL + + G C
Sbjct: 164 HEMEQYWAIGRLASGVNLFTNSFEGPVLDHRYYAGGC 200
>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
[Canis familiaris].
Length = 863
Score = 110 bits (276), Expect = 1e-24
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
P+NC Y PWS+C+ C + Q RS+ Q+GG PC +PC P++ C EE
Sbjct: 25 PVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE- 83
Query: 615 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 785
C +FRC SG+CI+ L CNG++DC D++DE C ++ C P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLD-QPPPNIELTGN 142
Query: 786 GFHILAGEPRGEVLGNSFTGGICKTV 863
G++ L G+ + +V+ GG C+ V
Sbjct: 143 GYNELTGQFKNKVINTKSFGGQCRKV 168
>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
precursor [Canis familiaris].
Length = 589
Score = 102 bits (253), Expect = 7e-22
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Frame = +3
Query: 426 QTCPIN---CLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKL 596
Q+ PI C L ++ W+DC PC +K+++ RS+L P++FGG C+ + C
Sbjct: 33 QSAPITAVPCQLSNWSEWTDCFPCQDKKYRYRSLLQPDKFGGTICSGDVWDQASCHSPTA 92
Query: 597 CKIEEVDCKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIP 764
C + + C F+C ++GRC+ L CNG+ DC D SDE +C + CS +Y PIP
Sbjct: 93 C-LHQAQCGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRVAENDCS-QYEPIP 150
Query: 765 SVQLMGAGFHILAGEPRGEVLGNSFTGGICKTV 863
+ G++IL + V + GG C+TV
Sbjct: 151 GSESAALGYNILTQKEAQHVYDPRYYGGQCETV 183
>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
[Canis familiaris].
Length = 143
Score = 96.7 bits (239), Expect = 3e-20
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
P+NC Y PWS+C+ C + Q RS+ Q+GG PC +PC P++ C EE
Sbjct: 25 PVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGCPTEE- 83
Query: 615 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 785
C +FRC SG+CI+ L CNG++DC D++DE C ++ C P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLD-QPPPNIELTGN 142
Query: 786 G 788
G
Sbjct: 143 G 143
>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
familiaris].
Length = 589
Score = 84.3 bits (207), Expect = 1e-16
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Frame = +3
Query: 408 TRECNWQTCPINCLLGDYGPWSDCDPCVEK------------QFKVRSILHPNQFGGQPC 551
TRE N P++C + + WS+CDPC+++ QF RSI QF GQ
Sbjct: 41 TRE-NDTPFPVDCRMSSWSQWSECDPCLKQMVKILIFPAGFVQFPSRSIQVFRQFKGQKG 99
Query: 552 TEPLMTFRPCIPSKLCKIEEVDCKN-KFRCDSGRCIASKLECNGENDCGDNSDERNC-GR 725
L P C E D F C +GRCI +L CNG+NDCGD SDE +C
Sbjct: 100 VAALGNRGHWDPGDPCAPGEEDWGGGDFGCRTGRCIKKRLLCNGDNDCGDFSDEDDCESD 159
Query: 726 TKAVCSRK-YNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
+ C K ++ G G +IL EP N + G+C V+
Sbjct: 160 PRLPCREKVVEESELARMAGYGINILGMEPLSTPFDNEYYNGLCDRVR 207
>ref|XP_540748.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 4 precursor (Multiple epidermal growth
factor-like domains 7) [Canis familiaris].
Length = 2021
Score = 57.0 bits (136), Expect = 3e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +3
Query: 453 GDYGPWSDCD---PCVEKQFKVRSILHPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 333 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 390
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 728
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 391 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 423
>ref|XP_867064.1| PREDICTED: similar to Brain-specific angiogenesis inhibitor 3
precursor isoform 5 [Canis familiaris].
Length = 1523
Score = 57.0 bits (136), Expect = 3e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSPWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,479,910
Number of extensions: 1003191
Number of successful extensions: 3201
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3063
Number of HSP's successfully gapped: 35
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002892
(951 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108603.2| complement component C6 precursor [Homo sapi... 405 e-116
Alignment gi|NP_000056.2| complement component C6 precursor [Homo sapiens]. 405 e-116
Alignment gi|NP_001728.1| complement component C9 precursor [Homo sapiens]. 117 2e-26
Alignment gi|NP_000553.1| complement component C8 alpha chain precursor [... 113 2e-25
Alignment gi|NP_000578.2| complement component C7 precursor [Homo sapiens]. 110 2e-24
Alignment gi|NP_000057.1| complement component C8 beta chain preproprotei... 105 8e-23
Alignment gi|NP_002325.2| low-density lipoprotein receptor-related protei... 57 2e-08
Alignment gi|NP_001695.1| brain-specific angiogenesis inhibitor 3 precurs... 57 2e-08
Alignment gi|NP_006099.2| spondin-1 precursor [Homo sapiens]. 55 7e-08
Alignment gi|NP_056019.1| thrombospondin type-1 domain-containing protein... 55 7e-08
>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 405 bits (1041), Expect(2) = e-116
Identities = 177/222 (79%), Positives = 196/222 (88%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
M + SVLYFILL+ LI+K QACFCDHY WTQW+SCSKTCNSG ++YY +NF
Sbjct: 1 MARRSVLYFILLNALINKGQACFCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENF 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
C+++C+KQETRECNWQ CPINCLLGD+GPWSDCDPC+EKQ KVRS+L P+QFGGQPCT P
Sbjct: 61 CEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
L+ F+PCIPSKLCKIEE DCKNKFRCDSGRCIA KLECNGENDCGDNSDER+CGRTKAVC
Sbjct: 121 LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 180
Query: 741 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
+RKYNPIPSVQLMG GFH LAGEPRGEVL NSFTGGICKTVK
Sbjct: 181 TRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVK 222
Score = 33.5 bits (75), Expect(2) = e-116
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNFVVQTKEED 948
K K+ + SN +R A+LENV F VQT E+D
Sbjct: 219 KTVKSSRTSNPYRVPANLENVGFEVQTAEDD 249
>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 405 bits (1041), Expect(2) = e-116
Identities = 177/222 (79%), Positives = 196/222 (88%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
M + SVLYFILL+ LI+K QACFCDHY WTQW+SCSKTCNSG ++YY +NF
Sbjct: 1 MARRSVLYFILLNALINKGQACFCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENF 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
C+++C+KQETRECNWQ CPINCLLGD+GPWSDCDPC+EKQ KVRS+L P+QFGGQPCT P
Sbjct: 61 CEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
L+ F+PCIPSKLCKIEE DCKNKFRCDSGRCIA KLECNGENDCGDNSDER+CGRTKAVC
Sbjct: 121 LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 180
Query: 741 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
+RKYNPIPSVQLMG GFH LAGEPRGEVL NSFTGGICKTVK
Sbjct: 181 TRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVK 222
Score = 33.5 bits (75), Expect(2) = e-116
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNFVVQTKEED 948
K K+ + SN +R A+LENV F VQT E+D
Sbjct: 219 KTVKSSRTSNPYRVPANLENVGFEVQTAEDD 249
>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
Length = 559
Score = 117 bits (292), Expect = 2e-26
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Frame = +3
Query: 405 ETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCI 584
E E + I+C + + WS CDPC+ + F+ RSI QF G+ CT+ + R C+
Sbjct: 30 ELTESSGSASHIDCRMSPWSEWSQCDPCLRQMFRSRSIEVFGQFNGKRCTDAVGDRRQCV 89
Query: 585 PSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC-GRTKAVC-SRKYNP 758
P++ C+ E DC N F+C +GRCI +L CNG+NDCGD SDE +C + C R
Sbjct: 90 PTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCESEPRPPCRDRVVEE 149
Query: 759 IPSVQLMGAGFHILAGEPRGEVLGNSFTGGIC 854
+ G G +IL +P N F G+C
Sbjct: 150 SELARTAGYGINILGMDPLSTPFDNEFYNGLC 181
>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
Length = 584
Score = 113 bits (283), Expect = 2e-25
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Frame = +3
Query: 438 INCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 617
+ C L ++ W+DC PC +K+++ RS+L PN+FGG C+ + C S C + +
Sbjct: 37 VTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTC-VRQAQ 95
Query: 618 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 785
C F+C ++GRC+ L CNG+ DC D SDE +C +A+ CS +Y PIP Q
Sbjct: 96 CGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCS-QYEPIPGSQKAAL 154
Query: 786 GFHILAGEPRGEVLGNSFTGGICKTV 863
G++IL E V S+ GG C+TV
Sbjct: 155 GYNILTQEDAQSVYDASYYGGQCETV 180
>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
Length = 843
Score = 110 bits (274), Expect = 2e-24
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
P+NC Y PWS+C+ C + Q + RS+ Q+GGQPC + C P++ C EE
Sbjct: 25 PVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGCPTEE- 83
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCG-DNSDERNCGRTKAVCSRKYN-PIPSVQLMGAG 788
C +FRC SG+CI+ L CNG++DC D++DE C ++ S + P P+++L G G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCDEDSADEDRCEDSERRPSCDIDKPPPNIELTGNG 143
Query: 789 FHILAGEPRGEVLGNSFTGGICKTV 863
++ L G+ R V+ GG C+ V
Sbjct: 144 YNELTGQFRNRVINTKSFGGQCRKV 168
>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
Length = 591
Score = 105 bits (261), Expect = 8e-23
Identities = 47/151 (31%), Positives = 78/151 (51%)
Frame = +3
Query: 402 QETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPC 581
++ R + PI+C L + W+ CDPC +K+++ +L P+QF G+PC C
Sbjct: 51 RQMRSVDVTLMPIDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDC 110
Query: 582 IPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPI 761
+ ++ C +V C+ +GRC+ +L CNG+NDCGD SDE NC R C + +
Sbjct: 111 VTNRPCG-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQY 169
Query: 762 PSVQLMGAGFHILAGEPRGEVLGNSFTGGIC 854
+ + +G ++ G VL + + G C
Sbjct: 170 WGIGSLASGINLFTNSFEGPVLDHRYYAGGC 200
>ref|NP_002325.2| low-density lipoprotein receptor-related protein 4 precursor [Homo
sapiens].
Length = 1905
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +3
Query: 453 GDYGPWSDCD---PCVEKQFKVRSILHPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINAGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 728
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCHSGRCVRLSWRCDGEDDCADNSDEENCENT 307
>ref|NP_001695.1| brain-specific angiogenesis inhibitor 3 precursor [Homo sapiens].
Length = 1522
Score = 57.0 bits (136), Expect = 2e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|NP_006099.2| spondin-1 precursor [Homo sapiens].
Length = 807
Score = 55.5 bits (132), Expect = 7e-08
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 282 PWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDY 461
PW++WS CS TC G L D ++ +C CPI+C L ++
Sbjct: 619 PWSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEDLEQVEKCMLPECPIDCELTEW 674
Query: 462 GPWSDCDPCVEK--QFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEE 611
WS+C+ K + R I QFGG PC E + K C+I +
Sbjct: 675 SQWSECNKSCGKGHVIRTRMIQMEPQFGGAPCPE-------TVQRKKCRIRK 719
>ref|NP_056019.1| thrombospondin type-1 domain-containing protein 7A precursor [Homo
sapiens].
Length = 1657
Score = 55.5 bits (132), Expect = 7e-08
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 29/193 (15%)
Frame = +3
Query: 270 CDHYPW--TQWSSCSKT----CNSGXXXXXXXXXXNQ-YYLD-NFCDRLCTKQETRECNW 425
C HY + T WS+C + C +G + +D +C+ L ++ NW
Sbjct: 1219 CYHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVDLKYCEALGLEK-----NW 1273
Query: 426 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILHPNQFGGQPCTEPLMTFR 575
Q CP+NC L D+ PWS+C K + R++ P Q G+PC + +
Sbjct: 1274 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPSLMDQSK 1333
Query: 576 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 722
PC P K C+++E C R + C+ S +D DE C
Sbjct: 1334 PC-PVKPCYRWQYGQWSPCQVQEAQCGEGTRTRNISCVVSD---GSADDFSKVVDEEFCA 1389
Query: 723 RTKAVCSRKYNPI 761
+ + N +
Sbjct: 1390 DIELIIDGNKNMV 1402
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,008,426
Number of extensions: 1007442
Number of successful extensions: 3227
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3090
Number of HSP's successfully gapped: 35
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002892
(951 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057913.2| complement component 6 [Mus musculus]. 387 e-112
Alignment gi|NP_038513.1| complement component C9 [Mus musculus]. 115 5e-26
Alignment gi|NP_001230766.1| complement component C7 [Mus musculus]. 111 7e-25
Alignment gi|NP_666260.1| complement component C8 alpha chain precursor [... 105 4e-23
Alignment gi|NP_598643.1| complement component C8 beta chain precursor [M... 101 7e-22
Alignment gi|NP_001139329.1| low-density lipoprotein receptor-related pro... 57 2e-08
Alignment gi|NP_766256.3| low-density lipoprotein receptor-related protei... 57 2e-08
Alignment gi|NP_663559.1| spondin-1 precursor [Mus musculus]. 57 2e-08
Alignment gi|NP_783573.4| brain-specific angiogenesis inhibitor 3 precurs... 57 2e-08
Alignment gi|NP_001074557.1| low-density lipoprotein receptor-related pro... 55 8e-08
>ref|NP_057913.2| complement component 6 [Mus musculus].
Length = 769
Score = 387 bits (994), Expect(2) = e-112
Identities = 172/222 (77%), Positives = 185/222 (83%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
M +H L FILL LIDKS+ACFCDHYPWT WSSCSK+CNSG N YY N
Sbjct: 1 MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
CD+LC KQETRECN QTCPINC+LGDYG WSDCDPC EKQ KV+S+L P+QFGGQPCTEP
Sbjct: 61 CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
L+TF+PC+PSKLCKIEE +CKNKF CDSGRCI SKLECNGENDCGDNSDERNCGRTK VC
Sbjct: 121 LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC 180
Query: 741 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
+R Y PIPSVQLMG GFH LAGEPRGEVL NSFTGGICK VK
Sbjct: 181 TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVK 222
Score = 37.4 bits (85), Expect(2) = e-112
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 865 KAVKASNQFRGSAHLENVNFVVQTKEED 948
K +ASN +R SA+LENVNF VQT E+D
Sbjct: 222 KTSRASNPYRVSANLENVNFEVQTIEDD 249
>ref|NP_038513.1| complement component C9 [Mus musculus].
Length = 561
Score = 115 bits (288), Expect = 5e-26
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
PI+C + + WS+CDPC++++F+ RSIL QF G+ C + L + C P++ C+ +
Sbjct: 51 PIDCRMSPWSNWSECDPCLKQRFRSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQE 110
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC-GRTKAVCSRKYNPIPSVQL-MGAG 788
+C N F+C++GRCI +L CNG+NDCGD SDE +C + C + + L G G
Sbjct: 111 NCGNDFQCETGRCIKRRLLCNGDNDCGDYSDENDCDDDPRTPCRDRVAEESELGLTAGYG 170
Query: 789 FHILAGEPRGEVLGNSFTGGICKTVK 866
+IL EP N F G+C V+
Sbjct: 171 INILGMEPLRTPFDNEFYNGLCDRVR 196
>ref|NP_001230766.1| complement component C7 [Mus musculus].
Length = 845
Score = 111 bits (278), Expect = 7e-25
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
P+NC YGPWS+C+ C + Q + RS+ Q+GG PC + C P + C EE
Sbjct: 25 PVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPERGCPTEE- 83
Query: 615 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYNPIPSVQLMGAGF 791
C ++FRC SG+CI+ L CNG+ DC D +DE C P P+++L G G+
Sbjct: 84 GCGDRFRCFSGQCISKSLVCNGDPDCEEDGADEDKCENVANPSCNIDKPPPNIELTGYGY 143
Query: 792 HILAGEPRGEVLGNSFTGGICKTV 863
+++ G+ + V+ GG C+ V
Sbjct: 144 NVVTGQGKKRVINTKSFGGQCRKV 167
>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
Length = 587
Score = 105 bits (263), Expect = 4e-23
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Frame = +3
Query: 438 INCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 617
++C L D+ W+DC PC +K+++ RS+L P++FGG C+ + C C + +
Sbjct: 37 VSCQLSDWYKWTDCFPCQDKKYRYRSLLQPSKFGGTICSGDIWDEASCDSPTPC-LRQAQ 95
Query: 618 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCG--RTKAVCSRKYNPIPSVQLMGAG 788
C F+C ++GRC+ L CNG+NDC D SDE +C R +Y PIP + G
Sbjct: 96 CGQDFQCRETGRCLKRHLVCNGDNDCLDGSDESDCEDVRVTEDDCHQYEPIPGSERAALG 155
Query: 789 FHILAGEPRGEVLGNSFTGGICKTV 863
++IL E V + GG C+TV
Sbjct: 156 YNILTQEEAQSVYDAKYYGGQCETV 180
>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
Length = 589
Score = 101 bits (252), Expect = 7e-22
Identities = 46/140 (32%), Positives = 75/140 (53%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
PI+C L + W+ CDPC +K+++ +L P+QF G+ C C+ ++ C+ +V
Sbjct: 61 PIDCELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCR-SQV 119
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPIPSVQLMGAGFH 794
C+ +GRC+ +L CNG+NDCGD SDE NC R C R+ ++ + +G +
Sbjct: 120 RCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKNCQREMEQYWAIDRLASGIN 179
Query: 795 ILAGEPRGEVLGNSFTGGIC 854
+ G VL + + G C
Sbjct: 180 LFTNTFEGPVLDHRYYAGGC 199
>ref|NP_001139329.1| low-density lipoprotein receptor-related protein 4 isoform 2 [Mus
musculus].
Length = 519
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +3
Query: 453 GDYGPWSDCD---PCVEKQFKVRSILHPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINSGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 728
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307
Score = 48.1 bits (113), Expect = 1e-05
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Frame = +3
Query: 606 EEVDC------KNKFRCDSGRCIASKLECNGENDCGDNSDE----RNCGRTKAVCS 743
+E DC +++F C +G CI S C+G+NDCGDNSDE R C + CS
Sbjct: 101 DEQDCPPRECEEDEFPCQNGYCIRSLWHCDGDNDCGDNSDEQCDMRKCSDKEFRCS 156
>ref|NP_766256.3| low-density lipoprotein receptor-related protein 4 isoform 1 [Mus
musculus].
Length = 1905
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +3
Query: 453 GDYGPWSDCD---PCVEKQFKVRSILHPN---QFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
GD+ SDC PC +F S L N + G + R C S +C E+
Sbjct: 217 GDWSDESDCSSHQPCRSGEFMCDSGLCINSGWRCDGDADCDDQSDERNCTTS-MCTAEQ- 274
Query: 615 DCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRT 728
FRC SGRC+ C+GE+DC DNSDE NC T
Sbjct: 275 -----FRCRSGRCVRLSWRCDGEDDCADNSDEENCENT 307
Score = 48.1 bits (113), Expect = 1e-05
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Frame = +3
Query: 606 EEVDC------KNKFRCDSGRCIASKLECNGENDCGDNSDE----RNCGRTKAVCS 743
+E DC +++F C +G CI S C+G+NDCGDNSDE R C + CS
Sbjct: 101 DEQDCPPRECEEDEFPCQNGYCIRSLWHCDGDNDCGDNSDEQCDMRKCSDKEFRCS 156
>ref|NP_663559.1| spondin-1 precursor [Mus musculus].
Length = 807
Score = 57.0 bits (136), Expect = 2e-08
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 282 PWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETRECNWQTCPINCLLGDY 461
PW++WS CS TC G L D ++ +C CPI+C L ++
Sbjct: 619 PWSEWSDCSVTCGKGMRTRQRMLKS----LAELGDCNEDLEQAEKCMLPECPIDCELSEW 674
Query: 462 GPWSDCDPCVEK--QFKVRSILHPNQFGGQPCTE 557
WS+C+ K + R+I QFGG PC E
Sbjct: 675 SQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPE 708
>ref|NP_783573.4| brain-specific angiogenesis inhibitor 3 precursor [Mus musculus].
Length = 1522
Score = 57.0 bits (136), Expect = 2e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSACSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRSCTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
V C N + S +C A+ +G ++C G ++ R C + + ++N
Sbjct: 411 HCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECTANGQWN 459
>ref|NP_001074557.1| low-density lipoprotein receptor-related protein 2 precursor [Mus
musculus].
Length = 4660
Score = 55.1 bits (131), Expect = 8e-08
Identities = 42/127 (33%), Positives = 51/127 (40%), Gaps = 26/127 (20%)
Frame = +3
Query: 456 DYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVDC----- 620
D G SD +P RS N+F C P CIPS E DC
Sbjct: 2848 DCGDGSDENPIYCASHTCRS----NEF---QCVSP----HRCIPSYWFCDGEADCVDSSD 2896
Query: 621 -------------KNKFRCDSGRCIASKLECNGENDCGDNSDE--------RNCGRTKAV 737
N+F CD+GRCI+S C+G+NDCGD SDE +NC T+
Sbjct: 2897 EPDTCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQNCSSTEFT 2956
Query: 738 CSRKYNP 758
C P
Sbjct: 2957 CINSRPP 2963
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 594 LCKIEEVDCK-NKFRCDSGRCIASKLECNGENDCGDNSDERNCG 722
LC E C ++FRCD+G CI CN +DC DNSDE+ CG
Sbjct: 3069 LCHTPEPTCPPHQFRCDNGHCIEMGTVCNHVDDCSDNSDEKGCG 3112
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +3
Query: 540 GQPCTEPLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC 719
G P EP P++ C + F C++G+C+ S C+G +DC DNSDE C
Sbjct: 1014 GDPAREP--------PTQQCG------SSSFPCNNGKCVPSIFRCDGVDDCHDNSDEHQC 1059
Query: 720 GRTKAVCS 743
G CS
Sbjct: 1060 GALNNTCS 1067
Score = 49.3 bits (116), Expect = 4e-06
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +3
Query: 621 KNKFRCDSGRCIASKLECNGENDCGDNSDERNC 719
+++FRC +CI S+ C+ ENDCGDNSDER+C
Sbjct: 3763 ESEFRCADQQCIPSRWVCDQENDCGDNSDERDC 3795
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,581,365
Number of extensions: 864120
Number of successful extensions: 3158
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2964
Number of HSP's successfully gapped: 53
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002892
(951 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090918.1| complement component C6 [Sus scrofa]. 466 e-138
Alignment gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus... 470 e-135
Alignment gi|NP_001090917.1| complement component C9 [Sus scrofa]. 120 1e-27
Alignment gi|NP_001090920.1| complement component C8B [Sus scrofa]. 113 1e-25
Alignment gi|NP_999447.1| complement component C7 precursor [Sus scrofa]. 110 1e-24
Alignment gi|NP_001090919.1| complement component C8 alpha chain [Sus scr... 102 4e-22
Alignment gi|XP_003361084.1| PREDICTED: thrombospondin type-1 domain-cont... 60 2e-09
Alignment gi|XP_003357499.1| PREDICTED: thrombospondin type-1 domain-cont... 59 4e-09
Alignment gi|XP_003121319.2| PREDICTED: brain-specific angiogenesis inhib... 59 5e-09
Alignment gi|XP_003353287.1| PREDICTED: brain-specific angiogenesis inhib... 59 5e-09
>ref|NP_001090918.1| complement component C6 [Sus scrofa].
Length = 935
Score = 466 bits (1200), Expect(2) = e-138
Identities = 211/222 (95%), Positives = 211/222 (95%)
Frame = +3
Query: 201 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNF 380
MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSG NQYYLDNF
Sbjct: 1 MDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGTQTRQRQITINQYYLDNF 60
Query: 381 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEP 560
CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSIL PNQFGGQPCTEP
Sbjct: 61 CDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEP 120
Query: 561 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 740
LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC
Sbjct: 121 LMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVC 180
Query: 741 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK
Sbjct: 181 SRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 222
Score = 44.3 bits (103), Expect(2) = e-138
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNFVVQTKEEDF 951
K K+ KASN FR A+LENVNF VQTKE+DF
Sbjct: 219 KTVKSSKASNPFRVPANLENVNFEVQTKEDDF 250
>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
Length = 267
Score = 470 bits (1210), Expect(2) = e-135
Identities = 212/223 (95%), Positives = 213/223 (95%)
Frame = +3
Query: 198 MMDKHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGXXXXXXXXXXNQYYLDN 377
MMD+HSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSG NQYYLDN
Sbjct: 1 MMDRHSVLYFILLSGLIDKSQACFCDHYPWTQWSSCSKTCNSGTQTRQRQITINQYYLDN 60
Query: 378 FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTE 557
FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTE
Sbjct: 61 FCDRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTE 120
Query: 558 PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV 737
PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV
Sbjct: 121 PLMTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAV 180
Query: 738 CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK
Sbjct: 181 CSRKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 223
Score = 28.9 bits (63), Expect(2) = e-135
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 856 KPSKAVKASNQFRGSAHLENVNFVV 930
K K+ KASN FR A+LENV+F +
Sbjct: 220 KTVKSSKASNPFRVPANLENVDFEI 244
>ref|NP_001090917.1| complement component C9 [Sus scrofa].
Length = 543
Score = 120 bits (301), Expect = 1e-27
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Frame = +3
Query: 414 ECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSK 593
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + R C+P++
Sbjct: 33 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 92
Query: 594 LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNC-GRTKAVC-SRKYNPIPS 767
C+ E DC + F+C +GRCI +L CNG+NDCGD SDE +C + C R
Sbjct: 93 PCEDLEEDCGSDFQCGTGRCIKRRLLCNGDNDCGDFSDEDDCDSDPRPPCRERVVEESEL 152
Query: 768 VQLMGAGFHILAGEPRGEVLGNSFTGGICKTVK 866
+ G G +IL +P N + G+C V+
Sbjct: 153 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVR 185
>ref|NP_001090920.1| complement component C8B [Sus scrofa].
Length = 611
Score = 113 bits (283), Expect = 1e-25
Identities = 51/157 (32%), Positives = 85/157 (54%)
Frame = +3
Query: 384 DRLCTKQETRECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPL 563
+ L ++TR + PI+C L + W+ CDPC +K+++ S+L P+QF G+PC
Sbjct: 57 ESLGKSRQTRSVDVTLTPIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNFSD 116
Query: 564 MTFRPCIPSKLCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCS 743
C+ ++ C+ +V C+ +GRCI +L CNG+NDCGD SDE NC R C
Sbjct: 117 KEVEDCVSNRPCR-SQVRCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQ 175
Query: 744 RKYNPIPSVQLMGAGFHILAGEPRGEVLGNSFTGGIC 854
++ + ++ + +G ++ G VL + + G C
Sbjct: 176 QEMDQYWAIGSLASGINLFTNNLEGPVLDHRYYAGAC 212
>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
Length = 843
Score = 110 bits (274), Expect = 1e-24
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Frame = +3
Query: 435 PINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEV 614
P+NC Y PWS+C+ C + Q + R + Q+GG PC + C P++ C EE
Sbjct: 25 PVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTRGCPTEE- 83
Query: 615 DCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNC--GRTKAVCSRKYNPIPSVQLMGA 785
C +FRC SG+CI+ L CNG++DC D++DE C ++ C P P+++L G
Sbjct: 84 GCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLS-KPPPNIELTGN 142
Query: 786 GFHILAGEPRGEVLGNSFTGGICKTV 863
G++ L G+ R VL GG C+ V
Sbjct: 143 GYNALTGQFRNRVLNTKSFGGQCRKV 168
>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
Length = 589
Score = 102 bits (253), Expect = 4e-22
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Frame = +3
Query: 438 INCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIEEVD 617
++C L ++ W++C PC +K+++ RS+L PN+FGG C+ + C C + +
Sbjct: 40 VSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGAICSGNVWDQASCHSPTEC-LRQAQ 98
Query: 618 CKNKFRC-DSGRCIASKLECNGENDCGDNSDERNCGRTKAV---CSRKYNPIPSVQLMGA 785
C F+C ++GRC+ L CNG+ DC D SDE +C + CS +Y+PIP +
Sbjct: 99 CGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCS-QYDPIPGSERATL 157
Query: 786 GFHILAGEPRGEVLGNSFTGGICKTV 863
G++IL E V + GG C+TV
Sbjct: 158 GYNILTQEETQSVYDARYYGGQCETV 183
>ref|XP_003361084.1| PREDICTED: thrombospondin type-1 domain-containing protein 7A-like
[Sus scrofa].
Length = 640
Score = 60.1 bits (144), Expect = 2e-09
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 27/185 (14%)
Frame = +3
Query: 264 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLCTKQETRECNW 425
CF +Y T WS+C + C +G + N +C+ L ++ NW
Sbjct: 213 CFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEK-----NW 267
Query: 426 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILHPNQFGGQPCTEPLMTFR 575
Q CP+NC L D+ PWS+C K + R++ P Q G+PC + +
Sbjct: 268 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSK 327
Query: 576 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 722
PC P K CK+++ C R + C+ S +D DE C
Sbjct: 328 PC-PVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSD---GSADDFSKVVDEEFCT 383
Query: 723 RTKAV 737
T+ +
Sbjct: 384 DTEPI 388
>ref|XP_003357499.1| PREDICTED: thrombospondin type-1 domain-containing protein 7A-like
[Sus scrofa].
Length = 995
Score = 58.9 bits (141), Expect = 4e-09
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 27/185 (14%)
Frame = +3
Query: 264 CFCDHYPWTQWSSCSKT----CNSGXXXXXXXXXXNQYYLDN--FCDRLCTKQETRECNW 425
CF +Y T WS+C + C +G + N +C+ L ++ NW
Sbjct: 575 CFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEK-----NW 629
Query: 426 QT-------CPINCLLGDYGPWSDCDP---CVEKQFKVRSILHPNQFGGQPCTEPLMTFR 575
Q CP+NC L D+ PWS+C K + R++ P Q G+PC + +
Sbjct: 630 QMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSK 689
Query: 576 PCIPSK-----------LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCG 722
PC P K CK+++ C R + C+ S +D D+ C
Sbjct: 690 PC-PVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSD---GSADDFSKVVDDEFCT 745
Query: 723 RTKAV 737
T+ +
Sbjct: 746 DTEPI 750
>ref|XP_003121319.2| PREDICTED: brain-specific angiogenesis inhibitor 3-like isoform 1
[Sus scrofa].
Length = 1522
Score = 58.5 bits (140), Expect = 5e-09
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRACTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
V C N + S +C A+ +G ++C G ++ R C + + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECIANGQWN 459
>ref|XP_003353287.1| PREDICTED: brain-specific angiogenesis inhibitor 3-like isoform 2
[Sus scrofa].
Length = 1522
Score = 58.5 bits (140), Expect = 5e-09
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Frame = +3
Query: 285 WTQWSSCSKTCNSGXXXXXXXXXXNQYYLDNFCDRLCTKQETREC-NWQTCPINCLLGDY 461
W+QWS+CS TC G C +E+R C N CP++ + ++
Sbjct: 297 WSQWSTCSVTCGQGSQVRTRTCVSP---YGTHCSG--PLRESRVCNNTALCPVHGVWEEW 351
Query: 462 GPWSDCD-PCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSKLCKIE---------- 608
PWS C C Q P Q+GG+PC P +PC LC ++
Sbjct: 352 SPWSLCSFTCGRGQRTRTRACTPPQYGGRPCEGPETHHKPC-NIALCPVDGQWQEWSSWS 410
Query: 609 --EVDCKNKFRCDSGRCIASKLECNGENDC-GDNSDERNCGRTKAVCSRKYN 755
V C N + S +C A+ +G ++C G ++ R C + + + ++N
Sbjct: 411 QCSVTCSNGTQQRSRQCTAA---AHGGSECRGPWAESRECYNPECIANGQWN 459
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,729,669
Number of extensions: 622249
Number of successful extensions: 1990
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1902
Number of HSP's successfully gapped: 26
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002892
(951 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 353 1e-94
>Sscrofa_Chr16
|| Length = 86898991
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 1 ctctagctgttgttagatcgctgggacatgaccttgggttagctagcagtggggaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262349 ctctagctgttgttagatcgctgggacatgaccttgggttagctagcagtggggaaaaaa 27262290
Query: 61 gacttgtttggattatcctataagccctcttcattgtgaataactattattttcttagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262289 gacttgtttggattatcctataagccctcttcattgtgaataactattattttcttagcc 27262230
Query: 121 atttgcagattagttccctggataccacaaactggataccagaaattctctttaaagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27262229 atttgcagattagttccctggataccacaaactggataccagaaattctctttaaagg 27262172
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 1 ctctagctgttgttagatcgctgggacatgaccttgggttagctagcagtggggaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139133 ctctagctgttgttagatcgctgggacatgaccttgggttagctagcagtggggaaaaaa 52139074
Query: 61 gacttgtttggattatcctataagccctcttcattgtgaataactattattttcttagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139073 gacttgtttggattatcctataagccctcttcattgtgaataactattattttcttagcc 52139014
Query: 121 atttgcagattagttccctggataccacaaactggataccagaaattctctttaaagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52139013 atttgcagattagttccctggataccacaaactggataccagaaattctctttaaagg 52138956
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Minus
Query: 176 aggatctggagactctccaggcatgatggacaaacactctgtcttgtattttatcttgct 235
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 27256069 aggatctggagactctccaggcatgatggacagacactctgtcttgtattttatcttgct 27256010
Query: 236 gagtggtctgattgacaagagccaagcctgtttctgtgatcactacccatggactcagtg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27256009 gagtggtctgattgacaagagccaagcctgtttctgtgatcactacccatggactcagtg 27255950
Query: 296 gtccagctgctcaaaaacctgtaattctggaacccagaccagacagag 343
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27255949 gtccagctgctcaaaaacctgtaattctggaacccagaccagacagag 27255902
Score = 315 bits (159), Expect = 2e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 342 agacaaattactataaatcagtactatcttgacaacttttgtgaccggctttgcaccaag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27254358 agacaaattactataaatcagtactatcttgacaacttttgtgaccggctttgcaccaag 27254299
Query: 402 caggagaccagagaatgtaactggcaaacttgtcctatcaattgcctcctgggagattat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27254298 caggagaccagagaatgtaactggcaaacttgtcctatcaattgcctcctgggagattat 27254239
Query: 462 ggaccatggtcagattgtgacccttgtgttgaaaaacag 500
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27254238 ggaccatggtcagattgtgacccttgtgttgaaaaacag 27254200
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 498 cagtttaaggttaggtccatcttgcaccccaatcagtttggaggacaaccatgtactgag 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27252967 cagtttaaggttaggtccatcttgcaccccaatcagtttggaggacaaccatgtactgag 27252908
Query: 558 ccactcatgacctttcgaccatgtattccatctaaactctgcaaaattgaagaggttgac 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27252907 ccactcatgacctttcgaccatgtattccatctaaactctgcaaaattgaagaggttgac 27252848
Query: 618 tgcaagaataaattccgctgtgacagtggt 647
||||||||||||||||||||||||||||||
Sbjct: 27252847 tgcaagaataaattccgctgtgacagtggt 27252818
Score = 280 bits (141), Expect = 1e-72
Identities = 144/145 (99%)
Strand = Plus / Minus
Query: 645 ggtcgctgcattgccagcaagttggaatgcaatggagaaaatgattgtggagacaattcg 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27248597 ggtcgctgcattgccagcaagttggaatgcaatggagaaaatgattgtggagacaattca 27248538
Query: 705 gatgagaggaattgtgggagaacaaaagcagtatgctcacggaagtataatcccatccct 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27248537 gatgagaggaattgtgggagaacaaaagcagtatgctcacggaagtataatcccatccct 27248478
Query: 765 agtgtacagttgatgggcgctgggt 789
|||||||||||||||||||||||||
Sbjct: 27248477 agtgtacagttgatgggcgctgggt 27248453
Score = 224 bits (113), Expect = 7e-56
Identities = 138/145 (95%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 787 ggtttcatattctggcaggagagcccagaggagaagtcctaggtaattctttcactggag 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27243065 ggtttcatattctggcaggagagcccagaggagaagtcctaggtaattctttcactggag 27243006
Query: 847 gaatatgtaaaaccgtcaaaagcagtaaaagccagtaatcaatttcgtggttcagcccat 906
|||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||| ||
Sbjct: 27243005 gaatatgtaaaaccgtcaaaagcagt-aaagccagtaatccatttcgtgttccagccaat 27242947
Query: 907 ctagaaaacgtcaactttgtggtac 931
|||||||||||| |||||| |||||
Sbjct: 27242946 ctagaaaacgtcgactttgaggtac 27242922
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,571,779
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 7
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)