Animal-Genome cDNA 20110601C-002895


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002895
         (2133 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179175.1| X-ray repair cross-complementing protein 6 [...  1033   0.0  
Alignment   gi|XP_002687993.1| PREDICTED: X-ray repair complementing defect...  1033   0.0  

>ref|NP_001179175.1| X-ray repair cross-complementing protein 6 [Bos taurus].
          Length = 612

 Score = 1033 bits (2671), Expect = 0.0
 Identities = 516/606 (85%), Positives = 549/606 (90%)
 Frame = +2

Query: 38   NMSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFD 217
            NMSGWESYYKN+               DY  SGRDSLIFLVDASRAMFESQDEDELTPFD
Sbjct: 5    NMSGWESYYKNEGDEEEEQEEGLEAGGDYSYSGRDSLIFLVDASRAMFESQDEDELTPFD 64

Query: 218  MSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDR 397
            MSIQCI+SVYTNKIISS+RDLLAVVFYGTKKDKNSVNFKNIYVLQELD+PG KRVQELD+
Sbjct: 65   MSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVLQELDNPGVKRVQELDK 124

Query: 398  FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSA 577
            FKGQEG KYF+D +GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+DDPHG+DSA
Sbjct: 125  FKGQEGKKYFEDQIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSA 184

Query: 578  KASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLED 757
            KASRARTKAGDLRDTGIFLDLMHLKK GGFD SLFYRD+I +AE+EDIG+HFEES KLED
Sbjct: 185  KASRARTKAGDLRDTGIFLDLMHLKKRGGFDTSLFYRDVI-IAENEDIGIHFEESSKLED 243

Query: 758  LLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTR 937
            LLRKVRAKET              DV LTVGIYN+VQKAY+P PVRLYRETNEPVKTKTR
Sbjct: 244  LLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNMVQKAYRPPPVRLYRETNEPVKTKTR 303

Query: 938  TFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHY 1117
            TFNVNTGSLLLPSDTKRSQTY +RQIVLEKEETE LKRFDEPG ILIGFKPL MLK+HHY
Sbjct: 304  TFNVNTGSLLLPSDTKRSQTYSHRQIVLEKEETEELKRFDEPGFILIGFKPLMMLKKHHY 363

Query: 1118 VRPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELD 1297
            +R SLFVYPEESL+NGSSTLF+ALLTKCLEKEVMAVCRYTPR+N PP FVAL+PQEEELD
Sbjct: 364  LRHSLFVYPEESLINGSSTLFSALLTKCLEKEVMAVCRYTPRRNSPPCFVALVPQEEELD 423

Query: 1298 DQKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENP 1477
            DQK+QV PPGFQLVFLPYADDKRKVPFTEK+MANPEQVDKMKAIVQKLRFKYRSDSFENP
Sbjct: 424  DQKIQVAPPGFQLVFLPYADDKRKVPFTEKVMANPEQVDKMKAIVQKLRFKYRSDSFENP 483

Query: 1478 VLQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAP 1657
            VLQQHFRNMEALALDLMEPEQAVDLTLPK E M KRLGSLVDEFKELVYPPDYNPEGK  
Sbjct: 484  VLQQHFRNMEALALDLMEPEQAVDLTLPKTEVMDKRLGSLVDEFKELVYPPDYNPEGKVT 543

Query: 1658 KRKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLD 1837
            KRK+D+ES GSKRPKVELSEEELKAH+S+GTLGKLTVP LKEACR++G+KGG+KKQELLD
Sbjct: 544  KRKKDDESYGSKRPKVELSEEELKAHVSKGTLGKLTVPALKEACRMYGLKGGLKKQELLD 603

Query: 1838 ALTKHF 1855
             LT+HF
Sbjct: 604  VLTEHF 609


>ref|XP_002687993.1| PREDICTED: X-ray repair complementing defective repair in Chinese
            hamster cells 6 [Bos taurus].
          Length = 612

 Score = 1033 bits (2671), Expect = 0.0
 Identities = 516/606 (85%), Positives = 549/606 (90%)
 Frame = +2

Query: 38   NMSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFD 217
            NMSGWESYYKN+               DY  SGRDSLIFLVDASRAMFESQDEDELTPFD
Sbjct: 5    NMSGWESYYKNEGDEEEEQEEGLEAGGDYSYSGRDSLIFLVDASRAMFESQDEDELTPFD 64

Query: 218  MSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDR 397
            MSIQCI+SVYTNKIISS+RDLLAVVFYGTKKDKNSVNFKNIYVLQELD+PG KRVQELD+
Sbjct: 65   MSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVLQELDNPGVKRVQELDK 124

Query: 398  FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSA 577
            FKGQEG KYF+D +GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+DDPHG+DSA
Sbjct: 125  FKGQEGKKYFEDQIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSA 184

Query: 578  KASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLED 757
            KASRARTKAGDLRDTGIFLDLMHLKK GGFD SLFYRD+I +AE+EDIG+HFEES KLED
Sbjct: 185  KASRARTKAGDLRDTGIFLDLMHLKKRGGFDTSLFYRDVI-IAENEDIGIHFEESSKLED 243

Query: 758  LLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTR 937
            LLRKVRAKET              DV LTVGIYN+VQKAY+P PVRLYRETNEPVKTKTR
Sbjct: 244  LLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNMVQKAYRPPPVRLYRETNEPVKTKTR 303

Query: 938  TFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHY 1117
            TFNVNTGSLLLPSDTKRSQTY +RQIVLEKEETE LKRFDEPG ILIGFKPL MLK+HHY
Sbjct: 304  TFNVNTGSLLLPSDTKRSQTYSHRQIVLEKEETEELKRFDEPGFILIGFKPLMMLKKHHY 363

Query: 1118 VRPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELD 1297
            +R SLFVYPEESL+NGSSTLF+ALLTKCLEKEVMAVCRYTPR+N PP FVAL+PQEEELD
Sbjct: 364  LRHSLFVYPEESLINGSSTLFSALLTKCLEKEVMAVCRYTPRRNSPPCFVALVPQEEELD 423

Query: 1298 DQKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENP 1477
            DQK+QV PPGFQLVFLPYADDKRKVPFTEK+MANPEQVDKMKAIVQKLRFKYRSDSFENP
Sbjct: 424  DQKIQVAPPGFQLVFLPYADDKRKVPFTEKVMANPEQVDKMKAIVQKLRFKYRSDSFENP 483

Query: 1478 VLQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAP 1657
            VLQQHFRNMEALALDLMEPEQAVDLTLPK E M KRLGSLVDEFKELVYPPDYNPEGK  
Sbjct: 484  VLQQHFRNMEALALDLMEPEQAVDLTLPKTEVMDKRLGSLVDEFKELVYPPDYNPEGKVT 543

Query: 1658 KRKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLD 1837
            KRK+D+ES GSKRPKVELSEEELKAH+S+GTLGKLTVP LKEACR++G+KGG+KKQELLD
Sbjct: 544  KRKKDDESYGSKRPKVELSEEELKAHVSKGTLGKLTVPALKEACRMYGLKGGLKKQELLD 603

Query: 1838 ALTKHF 1855
             LT+HF
Sbjct: 604  VLTEHF 609


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 77,741,019
Number of extensions: 2193850
Number of successful extensions: 7306
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7254
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 602
Effective length of database: 14,074,782
Effective search space: 8473018764
Effective search space used: 8473018764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002895
         (2133 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531714.1| PREDICTED: similar to ATP-dependent DNA helicas...  1030   0.0  
Alignment   gi|XP_857892.1| PREDICTED: similar to thyroid autoantigen isofo...   422   e-118

>ref|XP_531714.1| PREDICTED: similar to ATP-dependent DNA helicase II, 70 kDa subunit
            (Lupus Ku autoantigen protein p70) (Ku70) (70 kDa subunit
            of Ku antigen) (Thyroid-lupus autoantigen) (TLAA) (CTC
            box binding factor 75 kDa subunit) (CTCBF) (CTC75)
            isoform 1 [Canis familiaris].
          Length = 608

 Score = 1030 bits (2662), Expect = 0.0
 Identities = 512/605 (84%), Positives = 549/605 (90%)
 Frame = +2

Query: 41   MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
            MSGWESYYKN+               +Y  SGRDSLIFLVD SRAMFESQ E ELTPFDM
Sbjct: 1    MSGWESYYKNEGDEEGEQEDGLEAGGEYTYSGRDSLIFLVDGSRAMFESQGEVELTPFDM 60

Query: 221  SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
            SIQCIQSVYTNKIISS++DLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKRV ELD+F
Sbjct: 61   SIQCIQSVYTNKIISSNQDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRVLELDQF 120

Query: 401  KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
            KG+ G K+FQDL+GHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTN+DDPHGNDSAK
Sbjct: 121  KGERGKKHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGNDSAK 180

Query: 581  ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
            ASRARTKAGDLRDTGIFLDLMHLKK GGFDISLFYRDIIS+AEDED+GVHFEES KLEDL
Sbjct: 181  ASRARTKAGDLRDTGIFLDLMHLKKRGGFDISLFYRDIISIAEDEDLGVHFEESSKLEDL 240

Query: 761  LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 940
            LRKVRAKET              D ALTVGIYN+VQKA +P PVRLYRETNEPVK+KTRT
Sbjct: 241  LRKVRAKETRKRVLCRLKLKLSKDTALTVGIYNMVQKAVRPAPVRLYRETNEPVKSKTRT 300

Query: 941  FNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 1120
            FNVNTGSLLLPSDTKRSQ YGNRQIVLEKEETE LKRFDEPGLILIGFKPL MLK+HHY+
Sbjct: 301  FNVNTGSLLLPSDTKRSQNYGNRQIVLEKEETEELKRFDEPGLILIGFKPLIMLKKHHYL 360

Query: 1121 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 1300
            RPSLFVYPEESLVNGSSTLF ALLTKCLEKEVMAVCRYTPR+N+PPYFVAL+PQEEELDD
Sbjct: 361  RPSLFVYPEESLVNGSSTLFIALLTKCLEKEVMAVCRYTPRRNIPPYFVALLPQEEELDD 420

Query: 1301 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 1480
            QK+QVTPPGFQLVFLPYADDKRKVPFTEK+MANPEQ+DKMKAIVQKLRF YRSDSFENPV
Sbjct: 421  QKIQVTPPGFQLVFLPYADDKRKVPFTEKVMANPEQIDKMKAIVQKLRFNYRSDSFENPV 480

Query: 1481 LQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 1660
            LQQHFRN+E LALDLMEPEQA DLTLPK EA+ KRLGSLV+EFKELVYPPDY+PEGKAPK
Sbjct: 481  LQQHFRNLEVLALDLMEPEQAEDLTLPKIEAIDKRLGSLVNEFKELVYPPDYSPEGKAPK 540

Query: 1661 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 1840
            R+QD+E  GSKRPK+ELSEEEL+AH+++GTLGKLTVP LKEACRV G+KGG+KKQELLD 
Sbjct: 541  RRQDDEGLGSKRPKMELSEEELRAHVNKGTLGKLTVPMLKEACRVCGLKGGLKKQELLDI 600

Query: 1841 LTKHF 1855
            LTKHF
Sbjct: 601  LTKHF 605


>ref|XP_857892.1| PREDICTED: similar to thyroid autoantigen isoform 2 [Canis
           familiaris].
          Length = 293

 Score =  422 bits (1086), Expect = e-118
 Identities = 211/249 (84%), Positives = 224/249 (89%)
 Frame = +2

Query: 41  MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
           MSGWESYYKN+               +Y  SGRDSLIFLVD SRAMFESQ E ELTPFDM
Sbjct: 1   MSGWESYYKNEGDEEGEQEDGLEAGGEYTYSGRDSLIFLVDGSRAMFESQGEVELTPFDM 60

Query: 221 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
           SIQCIQSVYTNKIISS++DLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKRV ELD+F
Sbjct: 61  SIQCIQSVYTNKIISSNQDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRVLELDQF 120

Query: 401 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
           KG+ G K+FQDL+GHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTN+DDPHGNDSAK
Sbjct: 121 KGERGKKHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGNDSAK 180

Query: 581 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
           ASRARTKAGDLRDTGIFLDLMHLKK GGFDISLFYRDIIS+AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKRGGFDISLFYRDIISIAEDEDLGVHFEESSKLEDL 240

Query: 761 LRKVRAKET 787
           LRKVRAKET
Sbjct: 241 LRKVRAKET 249


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 81,072,552
Number of extensions: 2239524
Number of successful extensions: 7889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7848
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 601
Effective length of database: 15,207,544
Effective search space: 9139733944
Effective search space used: 9139733944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002895
         (2133 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001460.1| X-ray repair cross-complementing protein 6 [Hom...   999   0.0  

>ref|NP_001460.1| X-ray repair cross-complementing protein 6 [Homo sapiens].
          Length = 609

 Score =  999 bits (2582), Expect = 0.0
 Identities = 496/609 (81%), Positives = 540/609 (88%), Gaps = 2/609 (0%)
 Frame = +2

Query: 41   MSGWESYYKNQXXXXXXXXXXXXXXX--DYRCSGRDSLIFLVDASRAMFESQDEDELTPF 214
            MSGWESYYK +                 DY+ SGRDSLIFLVDAS+AMFESQ EDELTPF
Sbjct: 1    MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF 60

Query: 215  DMSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELD 394
            DMSIQCIQSVY +KIISSDRDLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKR+ ELD
Sbjct: 61   DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD 120

Query: 395  RFKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDS 574
            +FKGQ+G K FQD++GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+D+PHGNDS
Sbjct: 121  QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS 180

Query: 575  AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLE 754
            AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIIS+AEDED+ VHFEES KLE
Sbjct: 181  AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE 240

Query: 755  DLLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKT 934
            DLLRKVRAKET              D+ ++VGIYNLVQKA KP P++LYRETNEPVKTKT
Sbjct: 241  DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT 300

Query: 935  RTFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHH 1114
            RTFN +TG LLLPSDTKRSQ YG+RQI+LEKEETE LKRFD+PGL+L+GFKPL +LK+HH
Sbjct: 301  RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH 360

Query: 1115 YVRPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEEL 1294
            Y+RPSLFVYPEESLV GSSTLF+ALL KCLEKEV A+CRYTPR+N+PPYFVAL+PQEEEL
Sbjct: 361  YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL 420

Query: 1295 DDQKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFEN 1474
            DDQK+QVTPPGFQLVFLP+ADDKRK+PFTEKIMA PEQV KMKAIV+KLRF YRSDSFEN
Sbjct: 421  DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN 480

Query: 1475 PVLQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKA 1654
            PVLQQHFRN+EALALDLMEPEQAVDLTLPK EAM KRLGSLVDEFKELVYPPDYNPEGK 
Sbjct: 481  PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV 540

Query: 1655 PKRKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELL 1834
             KRK DNE  GSKRPKVE SEEELK HIS+GTLGK TVP LKEACR +G+K G+KKQELL
Sbjct: 541  TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL 600

Query: 1835 DALTKHFPD 1861
            +ALTKHF D
Sbjct: 601  EALTKHFQD 609


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 79,537,572
Number of extensions: 2205969
Number of successful extensions: 7389
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7345
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 601
Effective length of database: 14,671,124
Effective search space: 8817345524
Effective search space used: 8817345524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002895
         (2133 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034377.2| X-ray repair cross-complementing protein 6 [Mus...   984   0.0  

>ref|NP_034377.2| X-ray repair cross-complementing protein 6 [Mus musculus].
          Length = 608

 Score =  984 bits (2545), Expect = 0.0
 Identities = 491/604 (81%), Positives = 531/604 (87%)
 Frame = +2

Query: 41   MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
            MS WESYYK +               +Y+ SGRDSLIFLVDASRAMFESQ EDELTPFDM
Sbjct: 1    MSEWESYYKTEGEEEEEEEESPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDM 60

Query: 221  SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
            SIQCIQSVYT+KIISSDRDLLAVVFYGT+KDKNSVNFKNIYVLQ+LD+PGAKRV ELD+F
Sbjct: 61   SIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQF 120

Query: 401  KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
            KGQ+G K+F+D +GHGSDYSLSEVLWVCANLFSDVQ+KMSHKRIMLFTN+DDPHG DSAK
Sbjct: 121  KGQQGKKHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAK 180

Query: 581  ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
            ASRARTKA DLRDTGIFLDLMHLKKPGGFD+S+FYRDII+ AEDED+GVHFEES KLEDL
Sbjct: 181  ASRARTKASDLRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDL 240

Query: 761  LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 940
            LRKVRAKET              DV L VGIYNLVQKA KPFPVRLYRETNEPVKTKTRT
Sbjct: 241  LRKVRAKETKKRVLSRLKFKLGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRT 300

Query: 941  FNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 1120
            FNVNTGSLLLPSDTKRS TYG RQIVLEKEETE LKRFDEPGLIL+GFKP  MLK+ HY+
Sbjct: 301  FNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYL 360

Query: 1121 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 1300
            RPSLFVYPEESLV+GSSTLF+ALLTKC+EKEV+AVCRYTPRKN+ PYFVAL+PQEEELDD
Sbjct: 361  RPSLFVYPEESLVSGSSTLFSALLTKCVEKEVIAVCRYTPRKNVSPYFVALVPQEEELDD 420

Query: 1301 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 1480
            Q +QVTP GFQLVFLPYADDKRKVPFTEK+ AN EQ+DKMKAIVQKLRF YRSDSFENPV
Sbjct: 421  QNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQKLRFTYRSDSFENPV 480

Query: 1481 LQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 1660
            LQQHFRN+EALALD+ME EQ VDLTLPK EA+ KRLGSL DEFKELVYPP YNPEGK  K
Sbjct: 481  LQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAK 540

Query: 1661 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 1840
            RKQD+E   SK+PKVELSEEELKAH  +GTLGKLTVPTLK+ C+ HG+K G KKQELLDA
Sbjct: 541  RKQDDEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDA 600

Query: 1841 LTKH 1852
            L +H
Sbjct: 601  LIRH 604


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 67,553,714
Number of extensions: 1853735
Number of successful extensions: 6263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6223
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 602
Effective length of database: 12,343,635
Effective search space: 7430868270
Effective search space used: 7430868270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002895
         (2133 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177114.1| X-ray repair cross-complementing protein 6 [...  1141   0.0  

>ref|NP_001177114.1| X-ray repair cross-complementing protein 6 [Sus scrofa].
          Length = 607

 Score = 1141 bits (2951), Expect = 0.0
 Identities = 574/607 (94%), Positives = 575/607 (94%)
 Frame = +2

Query: 41   MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
            MSGWESYYKNQ               DYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM
Sbjct: 1    MSGWESYYKNQGDEEEEEEEGRETGEDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 60

Query: 221  SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
            SIQCIQSVYTNKIISSDRDLLAVVF GTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF
Sbjct: 61   SIQCIQSVYTNKIISSDRDLLAVVFCGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 120

Query: 401  KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
            KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK
Sbjct: 121  KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 180

Query: 581  ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
            ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL
Sbjct: 181  ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 240

Query: 761  LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 940
            LRKVRAKET              DVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT
Sbjct: 241  LRKVRAKETRKRVLHRLKLKLSKDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 300

Query: 941  FNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 1120
            FNVNTGSLLLPSDTKRSQTYGNRQ+VLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV
Sbjct: 301  FNVNTGSLLLPSDTKRSQTYGNRQVVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 360

Query: 1121 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 1300
            RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD
Sbjct: 361  RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 420

Query: 1301 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 1480
            QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV
Sbjct: 421  QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 480

Query: 1481 LQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 1660
            LQQHFRNME LALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK
Sbjct: 481  LQQHFRNMETLALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 540

Query: 1661 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 1840
            RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA
Sbjct: 541  RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 600

Query: 1841 LTKHFPD 1861
            LTKHF D
Sbjct: 601  LTKHFQD 607


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 50,262,176
Number of extensions: 1436602
Number of successful extensions: 4769
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 605
Effective length of database: 8,704,850
Effective search space: 5266434250
Effective search space used: 5266434250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002895
         (2133 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         539   e-150

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  539 bits (272), Expect = e-150
 Identities = 275/276 (99%)
 Strand = Plus / Minus

                                                                           
Query: 1669    agacaatgaaagctgtggaagcaaaaggcccaaggtggagttatctgaagaggagctgaa 1728
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274997 agacaatgaaagctgtggaagcaaaaggcccaaggtggagttatctgaagaggagctgaa 4274938

                                                                           
Query: 1729    ggcccacatcagcgagggcactctagggaagctcactgtgcccaccctgaaggaagcctg 1788
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274937 ggcccacatcagcgagggcactctagggaagctcactgtgcccaccctgaaggaagcctg 4274878

                                                                           
Query: 1789    cagggtacatggggtgaagggcgggatgaagaagcaggagctgctggatgctctcaccaa 1848
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274877 cagggtacatggggtgaagggcgggatgaagaagcaggagctgctggatgctctcaccaa 4274818

                                                                           
Query: 1849    gcacttcccggactgaccggagaccctacagccagtcacccgtccacgctgtagccagcc 1908
               |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274817 gcacttccaggactgaccggagaccctacagccagtcacccgtccacgctgtagccagcc 4274758

                                                   
Query: 1909    tgcccgctttcgtttttctcaagttaaatcatgttt 1944
               ||||||||||||||||||||||||||||||||||||
Sbjct: 4274757 tgcccgctttcgtttttctcaagttaaatcatgttt 4274722



 Score =  500 bits (252), Expect = e-138
 Identities = 258/260 (99%)
 Strand = Plus / Minus

                                                                           
Query: 366     caggtgctaaacgagtgcaagagctggatcggtttaaggggcaggaggggacgaagtatt 425
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294326 caggtgctaaacgagtgcaagagctggatcggtttaaggggcaggaggggacgaagtatt 4294267

                                                                           
Query: 426     tccaagacctgcttggccatggatctgactactcactaagtgaggtgctgtgggtctgcg 485
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294266 tccaagacctgcttggccatggatctgactactcactaagtgaggtgctgtgggtctgcg 4294207

                                                                           
Query: 486     ccaacctcttcagtgacgttcaggtcaagatgagccataagaggatcatgcttttcacca 545
               ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294206 ccaacctcttcagtgacgtccaggtcaagatgagccataagaggatcatgcttttcacca 4294147

                                                                           
Query: 546     atgacgacgacccccatggcaacgacagtgccaaagccagccgggccaggaccaaagctg 605
               |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294146 atgacgacgacccccacggcaacgacagtgccaaagccagccgggccaggaccaaagctg 4294087

                                   
Query: 606     gggacctccgtgacacaggt 625
               ||||||||||||||||||||
Sbjct: 4294086 gggacctccgtgacacaggt 4294067



 Score =  377 bits (190), Expect = e-101
 Identities = 190/190 (100%)
 Strand = Plus / Minus

                                                                           
Query: 805     caggttgaaacttaagctcagcaaagatgtagcgctcactgtcggcatttacaatttggt 864
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290260 caggttgaaacttaagctcagcaaagatgtagcgctcactgtcggcatttacaatttggt 4290201

                                                                           
Query: 865     ccagaaggcttacaaacctttcccggtgaggctttatcgggaaacaaatgaaccggtgaa 924
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290200 ccagaaggcttacaaacctttcccggtgaggctttatcgggaaacaaatgaaccggtgaa 4290141

                                                                           
Query: 925     aaccaagacccggacgtttaatgtaaacacaggcagtttgcttttgcctagcgacaccaa 984
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290140 aaccaagacccggacgtttaatgtaaacacaggcagtttgcttttgcctagcgacaccaa 4290081

                         
Query: 985     gaggtctcag 994
               ||||||||||
Sbjct: 4290080 gaggtctcag 4290071



 Score =  367 bits (185), Expect = 2e-98
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                           
Query: 621     caggtatcttcctggacttgatgcacctgaagaagcctgggggctttgacatatcgttgt 680
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4293410 caggtatcttcctggacttgatgcacctgaagaagcctgggggctttgacatatccttgt 4293351

                                                                           
Query: 681     tctacagagatatcatcagtgtggcagaggatgaggacataggggttcactttgaggagt 740
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293350 tctacagagatatcatcagtgtggcagaggatgaggacataggggttcactttgaggagt 4293291

                                                                           
Query: 741     cgcacaagctcgaggacctgttgaggaaggtccgtgccaaggagaccaggaagcgtgtgc 800
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293290 cgcacaagctcgaggacctgttgaggaaggtccgtgccaaggagaccaggaagcgtgtgc 4293231

                        
Query: 801     tccacaggt 809
               |||||||||
Sbjct: 4293230 tccacaggt 4293222



 Score =  327 bits (165), Expect = 1e-86
 Identities = 172/173 (99%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                           
Query: 992     cagacctatgggaatcgtcagattgtattagagaaagaagaaacagaaatgctgaaacgg 1051
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4287985 cagacctatgggaatcgtcagattgtattagagaaagaagaaacagaaatgctgaa-cgg 4287927

                                                                           
Query: 1052    ttcgatgaaccgggtttgattctcatcggtttcaagcccttgggaatgctgaagaggcat 1111
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287926 ttcgatgaaccgggtttgattctcatcggtttcaagcccttgggaatgctgaagaggcat 4287867

                                                                    
Query: 1112    cattacgtgaggccctcgctgttcgtgtaccccgaggagtccctggtgaatgg 1164
               |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287866 cattacgtgaggccctcgctgttcgtgtaccccgaggagtccctggtgaatgg 4287814



 Score =  325 bits (164), Expect = 6e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1163    gggagctcaaccctgttcactgctctgctcaccaagtgtctggagaaggaggtcatggca 1222
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285930 gggagctcaaccctgttcactgctctgctcaccaagtgtctggagaaggaggtcatggca 4285871

                                                                           
Query: 1223    gtgtgcagatatacgccccgcaagaacctccccccgtattttgtggccctgatgccacag 1282
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285870 gtgtgcagatatacgccccgcaagaacctccccccgtattttgtggccctgatgccacag 4285811

                                                           
Query: 1283    gaagaggagctggatgaccagaaagttcaggtgactcccccagg 1326
               ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285810 gaagaggagctggatgaccagaaagttcaggtgactcccccagg 4285767



 Score =  285 bits (144), Expect = 5e-74
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                           
Query: 227     cagtgtatccagagcgtgtacaccaataagatcataagcagtgatcgcgatctcttggca 286
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294710 cagtgtatccagagcgtgtacaccaataagatcataagcagtgatcgcgatctcttggca 4294651

                                                                           
Query: 287     gtggtgttctatggtaccaagaaggacaaaaactcagtgaatttcaaaaatatctacgtc 346
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294650 gtggtgttctatggtaccaagaaggacaaaaactcagtgaatttcaaaaatatctacgtc 4294591

                                       
Query: 347     ctacaggaattggatagtccaggt 370
               ||||||||||||||||||||||||
Sbjct: 4294590 ctacaggaattggatagtccaggt 4294567



 Score =  264 bits (133), Expect = 2e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1323    caggcttccagctcgtcttcttgccctatgctgatgacaaacggaaggtgccctttactg 1382
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4284200 caggcttccagctcgtcttcttgccctatgctgatgacaaacggaaggtgccctttactg 4284141

                                                                           
Query: 1383    aaaaaatcatggcaaacccagagcaggtggacaagatgaaggccattgttcagaagctcc 1442
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4284140 aaaaaatcatggcaaacccagagcaggtggacaagatgaaggccattgttcagaagctcc 4284081

                            
Query: 1443    gctttaagtacag 1455
               |||||||||||||
Sbjct: 4284080 gctttaagtacag 4284068



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1557    tgcccaaggctgaggcaatggctaaaaggctgggctccctggtggatgagtttaaggaac 1616
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277009 tgcccaaggctgaggcaatggctaaaaggctgggctccctggtggatgagtttaaggaac 4276950

                                                                     
Query: 1617    tggtctacccaccagattacaatcccgagggaaaggctcctaagcgaaaacaag 1670
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276949 tggtctacccaccagattacaatcccgagggaaaggctcctaagcgaaaacaag 4276896



 Score =  208 bits (105), Expect = 9e-51
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1452    acagaagtgacagctttgagaacccagtgctgcagcaacacttcaggaacatggaggcct 1511
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282701 acagaagtgacagctttgagaacccagtgctgcagcaacacttcaggaacatggaggcct 4282642

                                                            
Query: 1512    tggctttggatttgatggagcctgaacaagcagtggatctgacat 1556
               |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282641 tggctttggatttgatggagcctgaacaagcagtggatctgacat 4282597



 Score =  184 bits (93), Expect = 1e-43
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                           
Query: 24      agtgagcagtaaccaacatgtcagggtgggagtcttattacaaaaaccagggcgatgaag 83
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299785 agtgagcagtaaccaacatgtcagggtgggagtcttattacaaaaaccagggcgatgaag 4299726

                                                
Query: 84      aagaagaagaggaggagggccgtgaaacgggtg 116
               |||||||||||||||||||||||||||||||||
Sbjct: 4299725 aagaagaagaggaggagggccgtgaaacgggtg 4299693



 Score =  176 bits (89), Expect = 3e-41
 Identities = 106/114 (92%)
 Strand = Plus / Minus

                                                                           
Query: 116     gaagattatagatgttcaggaagagacagtttgannnnnnnggttgatgcttctagagcc 175
               |||||||||||||||||||||||||| |||||||       |||||||||||||||||||
Sbjct: 4297527 gaagattatagatgttcaggaagagatagtttgatttttttggttgatgcttctagagcc 4297468

                                                                     
Query: 176     atgtttgaatctcaggatgaagatgaattgactccttttgacatgagcatccag 229
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297467 atgtttgaatctcaggatgaagatgaattgactccttttgacatgagcatccag 4297414


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,749,722
Number of extensions: 819
Number of successful extensions: 819
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 12
Length of query: 2133
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2111
Effective length of database: 2,808,408,574
Effective search space: 5928550499714
Effective search space used: 5928550499714
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)