Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002895
(2133 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179175.1| X-ray repair cross-complementing protein 6 [... 1033 0.0
Alignment gi|XP_002687993.1| PREDICTED: X-ray repair complementing defect... 1033 0.0
>ref|NP_001179175.1| X-ray repair cross-complementing protein 6 [Bos taurus].
Length = 612
Score = 1033 bits (2671), Expect = 0.0
Identities = 516/606 (85%), Positives = 549/606 (90%)
Frame = +2
Query: 38 NMSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFD 217
NMSGWESYYKN+ DY SGRDSLIFLVDASRAMFESQDEDELTPFD
Sbjct: 5 NMSGWESYYKNEGDEEEEQEEGLEAGGDYSYSGRDSLIFLVDASRAMFESQDEDELTPFD 64
Query: 218 MSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDR 397
MSIQCI+SVYTNKIISS+RDLLAVVFYGTKKDKNSVNFKNIYVLQELD+PG KRVQELD+
Sbjct: 65 MSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVLQELDNPGVKRVQELDK 124
Query: 398 FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSA 577
FKGQEG KYF+D +GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+DDPHG+DSA
Sbjct: 125 FKGQEGKKYFEDQIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSA 184
Query: 578 KASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLED 757
KASRARTKAGDLRDTGIFLDLMHLKK GGFD SLFYRD+I +AE+EDIG+HFEES KLED
Sbjct: 185 KASRARTKAGDLRDTGIFLDLMHLKKRGGFDTSLFYRDVI-IAENEDIGIHFEESSKLED 243
Query: 758 LLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTR 937
LLRKVRAKET DV LTVGIYN+VQKAY+P PVRLYRETNEPVKTKTR
Sbjct: 244 LLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNMVQKAYRPPPVRLYRETNEPVKTKTR 303
Query: 938 TFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHY 1117
TFNVNTGSLLLPSDTKRSQTY +RQIVLEKEETE LKRFDEPG ILIGFKPL MLK+HHY
Sbjct: 304 TFNVNTGSLLLPSDTKRSQTYSHRQIVLEKEETEELKRFDEPGFILIGFKPLMMLKKHHY 363
Query: 1118 VRPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELD 1297
+R SLFVYPEESL+NGSSTLF+ALLTKCLEKEVMAVCRYTPR+N PP FVAL+PQEEELD
Sbjct: 364 LRHSLFVYPEESLINGSSTLFSALLTKCLEKEVMAVCRYTPRRNSPPCFVALVPQEEELD 423
Query: 1298 DQKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENP 1477
DQK+QV PPGFQLVFLPYADDKRKVPFTEK+MANPEQVDKMKAIVQKLRFKYRSDSFENP
Sbjct: 424 DQKIQVAPPGFQLVFLPYADDKRKVPFTEKVMANPEQVDKMKAIVQKLRFKYRSDSFENP 483
Query: 1478 VLQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAP 1657
VLQQHFRNMEALALDLMEPEQAVDLTLPK E M KRLGSLVDEFKELVYPPDYNPEGK
Sbjct: 484 VLQQHFRNMEALALDLMEPEQAVDLTLPKTEVMDKRLGSLVDEFKELVYPPDYNPEGKVT 543
Query: 1658 KRKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLD 1837
KRK+D+ES GSKRPKVELSEEELKAH+S+GTLGKLTVP LKEACR++G+KGG+KKQELLD
Sbjct: 544 KRKKDDESYGSKRPKVELSEEELKAHVSKGTLGKLTVPALKEACRMYGLKGGLKKQELLD 603
Query: 1838 ALTKHF 1855
LT+HF
Sbjct: 604 VLTEHF 609
>ref|XP_002687993.1| PREDICTED: X-ray repair complementing defective repair in Chinese
hamster cells 6 [Bos taurus].
Length = 612
Score = 1033 bits (2671), Expect = 0.0
Identities = 516/606 (85%), Positives = 549/606 (90%)
Frame = +2
Query: 38 NMSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFD 217
NMSGWESYYKN+ DY SGRDSLIFLVDASRAMFESQDEDELTPFD
Sbjct: 5 NMSGWESYYKNEGDEEEEQEEGLEAGGDYSYSGRDSLIFLVDASRAMFESQDEDELTPFD 64
Query: 218 MSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDR 397
MSIQCI+SVYTNKIISS+RDLLAVVFYGTKKDKNSVNFKNIYVLQELD+PG KRVQELD+
Sbjct: 65 MSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVLQELDNPGVKRVQELDK 124
Query: 398 FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSA 577
FKGQEG KYF+D +GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+DDPHG+DSA
Sbjct: 125 FKGQEGKKYFEDQIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSA 184
Query: 578 KASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLED 757
KASRARTKAGDLRDTGIFLDLMHLKK GGFD SLFYRD+I +AE+EDIG+HFEES KLED
Sbjct: 185 KASRARTKAGDLRDTGIFLDLMHLKKRGGFDTSLFYRDVI-IAENEDIGIHFEESSKLED 243
Query: 758 LLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTR 937
LLRKVRAKET DV LTVGIYN+VQKAY+P PVRLYRETNEPVKTKTR
Sbjct: 244 LLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNMVQKAYRPPPVRLYRETNEPVKTKTR 303
Query: 938 TFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHY 1117
TFNVNTGSLLLPSDTKRSQTY +RQIVLEKEETE LKRFDEPG ILIGFKPL MLK+HHY
Sbjct: 304 TFNVNTGSLLLPSDTKRSQTYSHRQIVLEKEETEELKRFDEPGFILIGFKPLMMLKKHHY 363
Query: 1118 VRPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELD 1297
+R SLFVYPEESL+NGSSTLF+ALLTKCLEKEVMAVCRYTPR+N PP FVAL+PQEEELD
Sbjct: 364 LRHSLFVYPEESLINGSSTLFSALLTKCLEKEVMAVCRYTPRRNSPPCFVALVPQEEELD 423
Query: 1298 DQKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENP 1477
DQK+QV PPGFQLVFLPYADDKRKVPFTEK+MANPEQVDKMKAIVQKLRFKYRSDSFENP
Sbjct: 424 DQKIQVAPPGFQLVFLPYADDKRKVPFTEKVMANPEQVDKMKAIVQKLRFKYRSDSFENP 483
Query: 1478 VLQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAP 1657
VLQQHFRNMEALALDLMEPEQAVDLTLPK E M KRLGSLVDEFKELVYPPDYNPEGK
Sbjct: 484 VLQQHFRNMEALALDLMEPEQAVDLTLPKTEVMDKRLGSLVDEFKELVYPPDYNPEGKVT 543
Query: 1658 KRKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLD 1837
KRK+D+ES GSKRPKVELSEEELKAH+S+GTLGKLTVP LKEACR++G+KGG+KKQELLD
Sbjct: 544 KRKKDDESYGSKRPKVELSEEELKAHVSKGTLGKLTVPALKEACRMYGLKGGLKKQELLD 603
Query: 1838 ALTKHF 1855
LT+HF
Sbjct: 604 VLTEHF 609
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 77,741,019
Number of extensions: 2193850
Number of successful extensions: 7306
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7254
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 602
Effective length of database: 14,074,782
Effective search space: 8473018764
Effective search space used: 8473018764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002895
(2133 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531714.1| PREDICTED: similar to ATP-dependent DNA helicas... 1030 0.0
Alignment gi|XP_857892.1| PREDICTED: similar to thyroid autoantigen isofo... 422 e-118
>ref|XP_531714.1| PREDICTED: similar to ATP-dependent DNA helicase II, 70 kDa subunit
(Lupus Ku autoantigen protein p70) (Ku70) (70 kDa subunit
of Ku antigen) (Thyroid-lupus autoantigen) (TLAA) (CTC
box binding factor 75 kDa subunit) (CTCBF) (CTC75)
isoform 1 [Canis familiaris].
Length = 608
Score = 1030 bits (2662), Expect = 0.0
Identities = 512/605 (84%), Positives = 549/605 (90%)
Frame = +2
Query: 41 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
MSGWESYYKN+ +Y SGRDSLIFLVD SRAMFESQ E ELTPFDM
Sbjct: 1 MSGWESYYKNEGDEEGEQEDGLEAGGEYTYSGRDSLIFLVDGSRAMFESQGEVELTPFDM 60
Query: 221 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
SIQCIQSVYTNKIISS++DLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKRV ELD+F
Sbjct: 61 SIQCIQSVYTNKIISSNQDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRVLELDQF 120
Query: 401 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
KG+ G K+FQDL+GHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTN+DDPHGNDSAK
Sbjct: 121 KGERGKKHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGNDSAK 180
Query: 581 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
ASRARTKAGDLRDTGIFLDLMHLKK GGFDISLFYRDIIS+AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKRGGFDISLFYRDIISIAEDEDLGVHFEESSKLEDL 240
Query: 761 LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 940
LRKVRAKET D ALTVGIYN+VQKA +P PVRLYRETNEPVK+KTRT
Sbjct: 241 LRKVRAKETRKRVLCRLKLKLSKDTALTVGIYNMVQKAVRPAPVRLYRETNEPVKSKTRT 300
Query: 941 FNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 1120
FNVNTGSLLLPSDTKRSQ YGNRQIVLEKEETE LKRFDEPGLILIGFKPL MLK+HHY+
Sbjct: 301 FNVNTGSLLLPSDTKRSQNYGNRQIVLEKEETEELKRFDEPGLILIGFKPLIMLKKHHYL 360
Query: 1121 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 1300
RPSLFVYPEESLVNGSSTLF ALLTKCLEKEVMAVCRYTPR+N+PPYFVAL+PQEEELDD
Sbjct: 361 RPSLFVYPEESLVNGSSTLFIALLTKCLEKEVMAVCRYTPRRNIPPYFVALLPQEEELDD 420
Query: 1301 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 1480
QK+QVTPPGFQLVFLPYADDKRKVPFTEK+MANPEQ+DKMKAIVQKLRF YRSDSFENPV
Sbjct: 421 QKIQVTPPGFQLVFLPYADDKRKVPFTEKVMANPEQIDKMKAIVQKLRFNYRSDSFENPV 480
Query: 1481 LQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 1660
LQQHFRN+E LALDLMEPEQA DLTLPK EA+ KRLGSLV+EFKELVYPPDY+PEGKAPK
Sbjct: 481 LQQHFRNLEVLALDLMEPEQAEDLTLPKIEAIDKRLGSLVNEFKELVYPPDYSPEGKAPK 540
Query: 1661 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 1840
R+QD+E GSKRPK+ELSEEEL+AH+++GTLGKLTVP LKEACRV G+KGG+KKQELLD
Sbjct: 541 RRQDDEGLGSKRPKMELSEEELRAHVNKGTLGKLTVPMLKEACRVCGLKGGLKKQELLDI 600
Query: 1841 LTKHF 1855
LTKHF
Sbjct: 601 LTKHF 605
>ref|XP_857892.1| PREDICTED: similar to thyroid autoantigen isoform 2 [Canis
familiaris].
Length = 293
Score = 422 bits (1086), Expect = e-118
Identities = 211/249 (84%), Positives = 224/249 (89%)
Frame = +2
Query: 41 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
MSGWESYYKN+ +Y SGRDSLIFLVD SRAMFESQ E ELTPFDM
Sbjct: 1 MSGWESYYKNEGDEEGEQEDGLEAGGEYTYSGRDSLIFLVDGSRAMFESQGEVELTPFDM 60
Query: 221 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
SIQCIQSVYTNKIISS++DLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKRV ELD+F
Sbjct: 61 SIQCIQSVYTNKIISSNQDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRVLELDQF 120
Query: 401 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
KG+ G K+FQDL+GHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTN+DDPHGNDSAK
Sbjct: 121 KGERGKKHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGNDSAK 180
Query: 581 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
ASRARTKAGDLRDTGIFLDLMHLKK GGFDISLFYRDIIS+AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKRGGFDISLFYRDIISIAEDEDLGVHFEESSKLEDL 240
Query: 761 LRKVRAKET 787
LRKVRAKET
Sbjct: 241 LRKVRAKET 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 81,072,552
Number of extensions: 2239524
Number of successful extensions: 7889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7848
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 601
Effective length of database: 15,207,544
Effective search space: 9139733944
Effective search space used: 9139733944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002895
(2133 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001460.1| X-ray repair cross-complementing protein 6 [Hom... 999 0.0
>ref|NP_001460.1| X-ray repair cross-complementing protein 6 [Homo sapiens].
Length = 609
Score = 999 bits (2582), Expect = 0.0
Identities = 496/609 (81%), Positives = 540/609 (88%), Gaps = 2/609 (0%)
Frame = +2
Query: 41 MSGWESYYKNQXXXXXXXXXXXXXXX--DYRCSGRDSLIFLVDASRAMFESQDEDELTPF 214
MSGWESYYK + DY+ SGRDSLIFLVDAS+AMFESQ EDELTPF
Sbjct: 1 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF 60
Query: 215 DMSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELD 394
DMSIQCIQSVY +KIISSDRDLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKR+ ELD
Sbjct: 61 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD 120
Query: 395 RFKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDS 574
+FKGQ+G K FQD++GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+D+PHGNDS
Sbjct: 121 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS 180
Query: 575 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLE 754
AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIIS+AEDED+ VHFEES KLE
Sbjct: 181 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE 240
Query: 755 DLLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKT 934
DLLRKVRAKET D+ ++VGIYNLVQKA KP P++LYRETNEPVKTKT
Sbjct: 241 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT 300
Query: 935 RTFNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHH 1114
RTFN +TG LLLPSDTKRSQ YG+RQI+LEKEETE LKRFD+PGL+L+GFKPL +LK+HH
Sbjct: 301 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH 360
Query: 1115 YVRPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEEL 1294
Y+RPSLFVYPEESLV GSSTLF+ALL KCLEKEV A+CRYTPR+N+PPYFVAL+PQEEEL
Sbjct: 361 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL 420
Query: 1295 DDQKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFEN 1474
DDQK+QVTPPGFQLVFLP+ADDKRK+PFTEKIMA PEQV KMKAIV+KLRF YRSDSFEN
Sbjct: 421 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN 480
Query: 1475 PVLQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKA 1654
PVLQQHFRN+EALALDLMEPEQAVDLTLPK EAM KRLGSLVDEFKELVYPPDYNPEGK
Sbjct: 481 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV 540
Query: 1655 PKRKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELL 1834
KRK DNE GSKRPKVE SEEELK HIS+GTLGK TVP LKEACR +G+K G+KKQELL
Sbjct: 541 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL 600
Query: 1835 DALTKHFPD 1861
+ALTKHF D
Sbjct: 601 EALTKHFQD 609
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 79,537,572
Number of extensions: 2205969
Number of successful extensions: 7389
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7345
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 601
Effective length of database: 14,671,124
Effective search space: 8817345524
Effective search space used: 8817345524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002895
(2133 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034377.2| X-ray repair cross-complementing protein 6 [Mus... 984 0.0
>ref|NP_034377.2| X-ray repair cross-complementing protein 6 [Mus musculus].
Length = 608
Score = 984 bits (2545), Expect = 0.0
Identities = 491/604 (81%), Positives = 531/604 (87%)
Frame = +2
Query: 41 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
MS WESYYK + +Y+ SGRDSLIFLVDASRAMFESQ EDELTPFDM
Sbjct: 1 MSEWESYYKTEGEEEEEEEESPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDM 60
Query: 221 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
SIQCIQSVYT+KIISSDRDLLAVVFYGT+KDKNSVNFKNIYVLQ+LD+PGAKRV ELD+F
Sbjct: 61 SIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQF 120
Query: 401 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
KGQ+G K+F+D +GHGSDYSLSEVLWVCANLFSDVQ+KMSHKRIMLFTN+DDPHG DSAK
Sbjct: 121 KGQQGKKHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAK 180
Query: 581 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
ASRARTKA DLRDTGIFLDLMHLKKPGGFD+S+FYRDII+ AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKASDLRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDL 240
Query: 761 LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 940
LRKVRAKET DV L VGIYNLVQKA KPFPVRLYRETNEPVKTKTRT
Sbjct: 241 LRKVRAKETKKRVLSRLKFKLGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRT 300
Query: 941 FNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 1120
FNVNTGSLLLPSDTKRS TYG RQIVLEKEETE LKRFDEPGLIL+GFKP MLK+ HY+
Sbjct: 301 FNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYL 360
Query: 1121 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 1300
RPSLFVYPEESLV+GSSTLF+ALLTKC+EKEV+AVCRYTPRKN+ PYFVAL+PQEEELDD
Sbjct: 361 RPSLFVYPEESLVSGSSTLFSALLTKCVEKEVIAVCRYTPRKNVSPYFVALVPQEEELDD 420
Query: 1301 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 1480
Q +QVTP GFQLVFLPYADDKRKVPFTEK+ AN EQ+DKMKAIVQKLRF YRSDSFENPV
Sbjct: 421 QNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQKLRFTYRSDSFENPV 480
Query: 1481 LQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 1660
LQQHFRN+EALALD+ME EQ VDLTLPK EA+ KRLGSL DEFKELVYPP YNPEGK K
Sbjct: 481 LQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAK 540
Query: 1661 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 1840
RKQD+E SK+PKVELSEEELKAH +GTLGKLTVPTLK+ C+ HG+K G KKQELLDA
Sbjct: 541 RKQDDEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDA 600
Query: 1841 LTKH 1852
L +H
Sbjct: 601 LIRH 604
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 67,553,714
Number of extensions: 1853735
Number of successful extensions: 6263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6223
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 602
Effective length of database: 12,343,635
Effective search space: 7430868270
Effective search space used: 7430868270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002895
(2133 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177114.1| X-ray repair cross-complementing protein 6 [... 1141 0.0
>ref|NP_001177114.1| X-ray repair cross-complementing protein 6 [Sus scrofa].
Length = 607
Score = 1141 bits (2951), Expect = 0.0
Identities = 574/607 (94%), Positives = 575/607 (94%)
Frame = +2
Query: 41 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 220
MSGWESYYKNQ DYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM
Sbjct: 1 MSGWESYYKNQGDEEEEEEEGRETGEDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 60
Query: 221 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 400
SIQCIQSVYTNKIISSDRDLLAVVF GTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF
Sbjct: 61 SIQCIQSVYTNKIISSDRDLLAVVFCGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 120
Query: 401 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 580
KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK
Sbjct: 121 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 180
Query: 581 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 760
ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 240
Query: 761 LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 940
LRKVRAKET DVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT
Sbjct: 241 LRKVRAKETRKRVLHRLKLKLSKDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTKTRT 300
Query: 941 FNVNTGSLLLPSDTKRSQTYGNRQIVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 1120
FNVNTGSLLLPSDTKRSQTYGNRQ+VLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV
Sbjct: 301 FNVNTGSLLLPSDTKRSQTYGNRQVVLEKEETEMLKRFDEPGLILIGFKPLGMLKRHHYV 360
Query: 1121 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 1300
RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD
Sbjct: 361 RPSLFVYPEESLVNGSSTLFTALLTKCLEKEVMAVCRYTPRKNLPPYFVALMPQEEELDD 420
Query: 1301 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 1480
QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV
Sbjct: 421 QKVQVTPPGFQLVFLPYADDKRKVPFTEKIMANPEQVDKMKAIVQKLRFKYRSDSFENPV 480
Query: 1481 LQQHFRNMEALALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 1660
LQQHFRNME LALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK
Sbjct: 481 LQQHFRNMETLALDLMEPEQAVDLTLPKAEAMAKRLGSLVDEFKELVYPPDYNPEGKAPK 540
Query: 1661 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 1840
RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA
Sbjct: 541 RKQDNESCGSKRPKVELSEEELKAHISEGTLGKLTVPTLKEACRVHGVKGGMKKQELLDA 600
Query: 1841 LTKHFPD 1861
LTKHF D
Sbjct: 601 LTKHFQD 607
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 50,262,176
Number of extensions: 1436602
Number of successful extensions: 4769
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 605
Effective length of database: 8,704,850
Effective search space: 5266434250
Effective search space used: 5266434250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002895
(2133 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 539 e-150
>Sscrofa_Chr05
|| Length = 111506441
Score = 539 bits (272), Expect = e-150
Identities = 275/276 (99%)
Strand = Plus / Minus
Query: 1669 agacaatgaaagctgtggaagcaaaaggcccaaggtggagttatctgaagaggagctgaa 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274997 agacaatgaaagctgtggaagcaaaaggcccaaggtggagttatctgaagaggagctgaa 4274938
Query: 1729 ggcccacatcagcgagggcactctagggaagctcactgtgcccaccctgaaggaagcctg 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274937 ggcccacatcagcgagggcactctagggaagctcactgtgcccaccctgaaggaagcctg 4274878
Query: 1789 cagggtacatggggtgaagggcgggatgaagaagcaggagctgctggatgctctcaccaa 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274877 cagggtacatggggtgaagggcgggatgaagaagcaggagctgctggatgctctcaccaa 4274818
Query: 1849 gcacttcccggactgaccggagaccctacagccagtcacccgtccacgctgtagccagcc 1908
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274817 gcacttccaggactgaccggagaccctacagccagtcacccgtccacgctgtagccagcc 4274758
Query: 1909 tgcccgctttcgtttttctcaagttaaatcatgttt 1944
||||||||||||||||||||||||||||||||||||
Sbjct: 4274757 tgcccgctttcgtttttctcaagttaaatcatgttt 4274722
Score = 500 bits (252), Expect = e-138
Identities = 258/260 (99%)
Strand = Plus / Minus
Query: 366 caggtgctaaacgagtgcaagagctggatcggtttaaggggcaggaggggacgaagtatt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294326 caggtgctaaacgagtgcaagagctggatcggtttaaggggcaggaggggacgaagtatt 4294267
Query: 426 tccaagacctgcttggccatggatctgactactcactaagtgaggtgctgtgggtctgcg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294266 tccaagacctgcttggccatggatctgactactcactaagtgaggtgctgtgggtctgcg 4294207
Query: 486 ccaacctcttcagtgacgttcaggtcaagatgagccataagaggatcatgcttttcacca 545
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294206 ccaacctcttcagtgacgtccaggtcaagatgagccataagaggatcatgcttttcacca 4294147
Query: 546 atgacgacgacccccatggcaacgacagtgccaaagccagccgggccaggaccaaagctg 605
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294146 atgacgacgacccccacggcaacgacagtgccaaagccagccgggccaggaccaaagctg 4294087
Query: 606 gggacctccgtgacacaggt 625
||||||||||||||||||||
Sbjct: 4294086 gggacctccgtgacacaggt 4294067
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 805 caggttgaaacttaagctcagcaaagatgtagcgctcactgtcggcatttacaatttggt 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290260 caggttgaaacttaagctcagcaaagatgtagcgctcactgtcggcatttacaatttggt 4290201
Query: 865 ccagaaggcttacaaacctttcccggtgaggctttatcgggaaacaaatgaaccggtgaa 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290200 ccagaaggcttacaaacctttcccggtgaggctttatcgggaaacaaatgaaccggtgaa 4290141
Query: 925 aaccaagacccggacgtttaatgtaaacacaggcagtttgcttttgcctagcgacaccaa 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290140 aaccaagacccggacgtttaatgtaaacacaggcagtttgcttttgcctagcgacaccaa 4290081
Query: 985 gaggtctcag 994
||||||||||
Sbjct: 4290080 gaggtctcag 4290071
Score = 367 bits (185), Expect = 2e-98
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 621 caggtatcttcctggacttgatgcacctgaagaagcctgggggctttgacatatcgttgt 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4293410 caggtatcttcctggacttgatgcacctgaagaagcctgggggctttgacatatccttgt 4293351
Query: 681 tctacagagatatcatcagtgtggcagaggatgaggacataggggttcactttgaggagt 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293350 tctacagagatatcatcagtgtggcagaggatgaggacataggggttcactttgaggagt 4293291
Query: 741 cgcacaagctcgaggacctgttgaggaaggtccgtgccaaggagaccaggaagcgtgtgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293290 cgcacaagctcgaggacctgttgaggaaggtccgtgccaaggagaccaggaagcgtgtgc 4293231
Query: 801 tccacaggt 809
|||||||||
Sbjct: 4293230 tccacaggt 4293222
Score = 327 bits (165), Expect = 1e-86
Identities = 172/173 (99%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 992 cagacctatgggaatcgtcagattgtattagagaaagaagaaacagaaatgctgaaacgg 1051
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4287985 cagacctatgggaatcgtcagattgtattagagaaagaagaaacagaaatgctgaa-cgg 4287927
Query: 1052 ttcgatgaaccgggtttgattctcatcggtttcaagcccttgggaatgctgaagaggcat 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287926 ttcgatgaaccgggtttgattctcatcggtttcaagcccttgggaatgctgaagaggcat 4287867
Query: 1112 cattacgtgaggccctcgctgttcgtgtaccccgaggagtccctggtgaatgg 1164
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287866 cattacgtgaggccctcgctgttcgtgtaccccgaggagtccctggtgaatgg 4287814
Score = 325 bits (164), Expect = 6e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1163 gggagctcaaccctgttcactgctctgctcaccaagtgtctggagaaggaggtcatggca 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285930 gggagctcaaccctgttcactgctctgctcaccaagtgtctggagaaggaggtcatggca 4285871
Query: 1223 gtgtgcagatatacgccccgcaagaacctccccccgtattttgtggccctgatgccacag 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285870 gtgtgcagatatacgccccgcaagaacctccccccgtattttgtggccctgatgccacag 4285811
Query: 1283 gaagaggagctggatgaccagaaagttcaggtgactcccccagg 1326
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285810 gaagaggagctggatgaccagaaagttcaggtgactcccccagg 4285767
Score = 285 bits (144), Expect = 5e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 227 cagtgtatccagagcgtgtacaccaataagatcataagcagtgatcgcgatctcttggca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294710 cagtgtatccagagcgtgtacaccaataagatcataagcagtgatcgcgatctcttggca 4294651
Query: 287 gtggtgttctatggtaccaagaaggacaaaaactcagtgaatttcaaaaatatctacgtc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294650 gtggtgttctatggtaccaagaaggacaaaaactcagtgaatttcaaaaatatctacgtc 4294591
Query: 347 ctacaggaattggatagtccaggt 370
||||||||||||||||||||||||
Sbjct: 4294590 ctacaggaattggatagtccaggt 4294567
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 1323 caggcttccagctcgtcttcttgccctatgctgatgacaaacggaaggtgccctttactg 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4284200 caggcttccagctcgtcttcttgccctatgctgatgacaaacggaaggtgccctttactg 4284141
Query: 1383 aaaaaatcatggcaaacccagagcaggtggacaagatgaaggccattgttcagaagctcc 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4284140 aaaaaatcatggcaaacccagagcaggtggacaagatgaaggccattgttcagaagctcc 4284081
Query: 1443 gctttaagtacag 1455
|||||||||||||
Sbjct: 4284080 gctttaagtacag 4284068
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 1557 tgcccaaggctgaggcaatggctaaaaggctgggctccctggtggatgagtttaaggaac 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277009 tgcccaaggctgaggcaatggctaaaaggctgggctccctggtggatgagtttaaggaac 4276950
Query: 1617 tggtctacccaccagattacaatcccgagggaaaggctcctaagcgaaaacaag 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276949 tggtctacccaccagattacaatcccgagggaaaggctcctaagcgaaaacaag 4276896
Score = 208 bits (105), Expect = 9e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1452 acagaagtgacagctttgagaacccagtgctgcagcaacacttcaggaacatggaggcct 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282701 acagaagtgacagctttgagaacccagtgctgcagcaacacttcaggaacatggaggcct 4282642
Query: 1512 tggctttggatttgatggagcctgaacaagcagtggatctgacat 1556
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282641 tggctttggatttgatggagcctgaacaagcagtggatctgacat 4282597
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 24 agtgagcagtaaccaacatgtcagggtgggagtcttattacaaaaaccagggcgatgaag 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299785 agtgagcagtaaccaacatgtcagggtgggagtcttattacaaaaaccagggcgatgaag 4299726
Query: 84 aagaagaagaggaggagggccgtgaaacgggtg 116
|||||||||||||||||||||||||||||||||
Sbjct: 4299725 aagaagaagaggaggagggccgtgaaacgggtg 4299693
Score = 176 bits (89), Expect = 3e-41
Identities = 106/114 (92%)
Strand = Plus / Minus
Query: 116 gaagattatagatgttcaggaagagacagtttgannnnnnnggttgatgcttctagagcc 175
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 4297527 gaagattatagatgttcaggaagagatagtttgatttttttggttgatgcttctagagcc 4297468
Query: 176 atgtttgaatctcaggatgaagatgaattgactccttttgacatgagcatccag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297467 atgtttgaatctcaggatgaagatgaattgactccttttgacatgagcatccag 4297414
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,749,722
Number of extensions: 819
Number of successful extensions: 819
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 12
Length of query: 2133
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2111
Effective length of database: 2,808,408,574
Effective search space: 5928550499714
Effective search space used: 5928550499714
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)