Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002896
(956 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179175.1| X-ray repair cross-complementing protein 6 [... 475 e-135
Alignment gi|XP_002687993.1| PREDICTED: X-ray repair complementing defect... 475 e-135
>ref|NP_001179175.1| X-ray repair cross-complementing protein 6 [Bos taurus].
Length = 612
Score = 475 bits (1222), Expect(2) = e-135
Identities = 239/298 (80%), Positives = 256/298 (85%)
Frame = +3
Query: 36 NMSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFD 215
NMSGWESYYKN+ DY SGRDSLIFLVDASRAMFESQDEDELTPFD
Sbjct: 5 NMSGWESYYKNEGDEEEEQEEGLEAGGDYSYSGRDSLIFLVDASRAMFESQDEDELTPFD 64
Query: 216 MSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDR 395
MSIQCI+SVYTNKIISS+RDLLAVVFYGTKKDKNSVNFKNIYVLQELD+PG KRVQELD+
Sbjct: 65 MSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVLQELDNPGVKRVQELDK 124
Query: 396 FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSA 575
FKGQEG KYF+D +GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+DDPHG+DSA
Sbjct: 125 FKGQEGKKYFEDQIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSA 184
Query: 576 KASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLED 755
KASRARTKAGDLRDTGIFLDLMHLKK GGFD SLFYRD+I +AE+EDIG+HFEES KLED
Sbjct: 185 KASRARTKAGDLRDTGIFLDLMHLKKRGGFDTSLFYRDVI-IAENEDIGIHFEESSKLED 243
Query: 756 LLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRGTNDPVKTR 929
LLRKVRAKET DV LTVGIYN+VQKAY+P PVRLYR TN+PVKT+
Sbjct: 244 LLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNMVQKAYRPPPVRLYRETNEPVKTK 301
Score = 24.6 bits (52), Expect(2) = e-135
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 914 PGENKTRKFNVNTG 955
P + KTR FNVNTG
Sbjct: 297 PVKTKTRTFNVNTG 310
>ref|XP_002687993.1| PREDICTED: X-ray repair complementing defective repair in Chinese
hamster cells 6 [Bos taurus].
Length = 612
Score = 475 bits (1222), Expect(2) = e-135
Identities = 239/298 (80%), Positives = 256/298 (85%)
Frame = +3
Query: 36 NMSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFD 215
NMSGWESYYKN+ DY SGRDSLIFLVDASRAMFESQDEDELTPFD
Sbjct: 5 NMSGWESYYKNEGDEEEEQEEGLEAGGDYSYSGRDSLIFLVDASRAMFESQDEDELTPFD 64
Query: 216 MSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDR 395
MSIQCI+SVYTNKIISS+RDLLAVVFYGTKKDKNSVNFKNIYVLQELD+PG KRVQELD+
Sbjct: 65 MSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDKNSVNFKNIYVLQELDNPGVKRVQELDK 124
Query: 396 FKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSA 575
FKGQEG KYF+D +GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+DDPHG+DSA
Sbjct: 125 FKGQEGKKYFEDQIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSA 184
Query: 576 KASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLED 755
KASRARTKAGDLRDTGIFLDLMHLKK GGFD SLFYRD+I +AE+EDIG+HFEES KLED
Sbjct: 185 KASRARTKAGDLRDTGIFLDLMHLKKRGGFDTSLFYRDVI-IAENEDIGIHFEESSKLED 243
Query: 756 LLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRGTNDPVKTR 929
LLRKVRAKET DV LTVGIYN+VQKAY+P PVRLYR TN+PVKT+
Sbjct: 244 LLRKVRAKETRKRVLSRLKLKLNKDVTLTVGIYNMVQKAYRPPPVRLYRETNEPVKTK 301
Score = 24.6 bits (52), Expect(2) = e-135
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 914 PGENKTRKFNVNTG 955
P + KTR FNVNTG
Sbjct: 297 PVKTKTRTFNVNTG 310
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,378,140
Number of extensions: 703751
Number of successful extensions: 1788
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1786
Number of HSP's successfully gapped: 4
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002896
(956 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531714.1| PREDICTED: similar to ATP-dependent DNA helicas... 469 e-133
Alignment gi|XP_857892.1| PREDICTED: similar to thyroid autoantigen isofo... 422 e-118
>ref|XP_531714.1| PREDICTED: similar to ATP-dependent DNA helicase II, 70 kDa subunit
(Lupus Ku autoantigen protein p70) (Ku70) (70 kDa
subunit of Ku antigen) (Thyroid-lupus autoantigen)
(TLAA) (CTC box binding factor 75 kDa subunit) (CTCBF)
(CTC75) isoform 1 [Canis familiaris].
Length = 608
Score = 469 bits (1206), Expect(2) = e-133
Identities = 236/297 (79%), Positives = 254/297 (85%)
Frame = +3
Query: 39 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 218
MSGWESYYKN+ +Y SGRDSLIFLVD SRAMFESQ E ELTPFDM
Sbjct: 1 MSGWESYYKNEGDEEGEQEDGLEAGGEYTYSGRDSLIFLVDGSRAMFESQGEVELTPFDM 60
Query: 219 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 398
SIQCIQSVYTNKIISS++DLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKRV ELD+F
Sbjct: 61 SIQCIQSVYTNKIISSNQDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRVLELDQF 120
Query: 399 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 578
KG+ G K+FQDL+GHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTN+DDPHGNDSAK
Sbjct: 121 KGERGKKHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGNDSAK 180
Query: 579 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 758
ASRARTKAGDLRDTGIFLDLMHLKK GGFDISLFYRDIIS+AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKRGGFDISLFYRDIISIAEDEDLGVHFEESSKLEDL 240
Query: 759 LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRGTNDPVKTR 929
LRKVRAKET D ALTVGIYN+VQKA +P PVRLYR TN+PVK++
Sbjct: 241 LRKVRAKETRKRVLCRLKLKLSKDTALTVGIYNMVQKAVRPAPVRLYRETNEPVKSK 297
Score = 25.0 bits (53), Expect(2) = e-133
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 914 PGENKTRKFNVNTG 955
P ++KTR FNVNTG
Sbjct: 293 PVKSKTRTFNVNTG 306
>ref|XP_857892.1| PREDICTED: similar to thyroid autoantigen isoform 2 [Canis
familiaris].
Length = 293
Score = 422 bits (1086), Expect = e-118
Identities = 211/249 (84%), Positives = 224/249 (89%)
Frame = +3
Query: 39 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 218
MSGWESYYKN+ +Y SGRDSLIFLVD SRAMFESQ E ELTPFDM
Sbjct: 1 MSGWESYYKNEGDEEGEQEDGLEAGGEYTYSGRDSLIFLVDGSRAMFESQGEVELTPFDM 60
Query: 219 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 398
SIQCIQSVYTNKIISS++DLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKRV ELD+F
Sbjct: 61 SIQCIQSVYTNKIISSNQDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRVLELDQF 120
Query: 399 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 578
KG+ G K+FQDL+GHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTN+DDPHGNDSAK
Sbjct: 121 KGERGKKHFQDLIGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNEDDPHGNDSAK 180
Query: 579 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 758
ASRARTKAGDLRDTGIFLDLMHLKK GGFDISLFYRDIIS+AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKRGGFDISLFYRDIISIAEDEDLGVHFEESSKLEDL 240
Query: 759 LRKVRAKET 785
LRKVRAKET
Sbjct: 241 LRKVRAKET 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,692,768
Number of extensions: 721539
Number of successful extensions: 1751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002896
(956 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001460.1| X-ray repair cross-complementing protein 6 [Hom... 462 e-130
>ref|NP_001460.1| X-ray repair cross-complementing protein 6 [Homo sapiens].
Length = 609
Score = 462 bits (1188), Expect = e-130
Identities = 232/299 (77%), Positives = 254/299 (84%), Gaps = 2/299 (0%)
Frame = +3
Query: 39 MSGWESYYKNQXXXXXXXXXXXXXXX--DYRCSGRDSLIFLVDASRAMFESQDEDELTPF 212
MSGWESYYK + DY+ SGRDSLIFLVDAS+AMFESQ EDELTPF
Sbjct: 1 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF 60
Query: 213 DMSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELD 392
DMSIQCIQSVY +KIISSDRDLLAVVFYGT+KDKNSVNFKNIYVLQELD+PGAKR+ ELD
Sbjct: 61 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD 120
Query: 393 RFKGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDS 572
+FKGQ+G K FQD++GHGSDYSLSEVLWVCANLFSDVQ KMSHKRIMLFTN+D+PHGNDS
Sbjct: 121 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS 180
Query: 573 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLE 752
AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIIS+AEDED+ VHFEES KLE
Sbjct: 181 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE 240
Query: 753 DLLRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRGTNDPVKTR 929
DLLRKVRAKET D+ ++VGIYNLVQKA KP P++LYR TN+PVKT+
Sbjct: 241 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTK 299
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,149,907
Number of extensions: 716241
Number of successful extensions: 1863
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002896
(956 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034377.2| X-ray repair cross-complementing protein 6 [Mus... 466 e-131
>ref|NP_034377.2| X-ray repair cross-complementing protein 6 [Mus musculus].
Length = 608
Score = 466 bits (1198), Expect = e-131
Identities = 233/297 (78%), Positives = 253/297 (85%)
Frame = +3
Query: 39 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 218
MS WESYYK + +Y+ SGRDSLIFLVDASRAMFESQ EDELTPFDM
Sbjct: 1 MSEWESYYKTEGEEEEEEEESPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDM 60
Query: 219 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 398
SIQCIQSVYT+KIISSDRDLLAVVFYGT+KDKNSVNFKNIYVLQ+LD+PGAKRV ELD+F
Sbjct: 61 SIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQF 120
Query: 399 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 578
KGQ+G K+F+D +GHGSDYSLSEVLWVCANLFSDVQ+KMSHKRIMLFTN+DDPHG DSAK
Sbjct: 121 KGQQGKKHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAK 180
Query: 579 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 758
ASRARTKA DLRDTGIFLDLMHLKKPGGFD+S+FYRDII+ AEDED+GVHFEES KLEDL
Sbjct: 181 ASRARTKASDLRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDL 240
Query: 759 LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRGTNDPVKTR 929
LRKVRAKET DV L VGIYNLVQKA KPFPVRLYR TN+PVKT+
Sbjct: 241 LRKVRAKETKKRVLSRLKFKLGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTK 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,552,364
Number of extensions: 609049
Number of successful extensions: 1613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1612
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002896
(956 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177114.1| X-ray repair cross-complementing protein 6 [... 521 e-148
>ref|NP_001177114.1| X-ray repair cross-complementing protein 6 [Sus scrofa].
Length = 607
Score = 521 bits (1343), Expect = e-148
Identities = 264/297 (88%), Positives = 266/297 (89%)
Frame = +3
Query: 39 MSGWESYYKNQXXXXXXXXXXXXXXXDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 218
MSGWESYYKNQ DYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM
Sbjct: 1 MSGWESYYKNQGDEEEEEEEGRETGEDYRCSGRDSLIFLVDASRAMFESQDEDELTPFDM 60
Query: 219 SIQCIQSVYTNKIISSDRDLLAVVFYGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 398
SIQCIQSVYTNKIISSDRDLLAVVF GTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF
Sbjct: 61 SIQCIQSVYTNKIISSDRDLLAVVFCGTKKDKNSVNFKNIYVLQELDSPGAKRVQELDRF 120
Query: 399 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 578
KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK
Sbjct: 121 KGQEGTKYFQDLLGHGSDYSLSEVLWVCANLFSDVQVKMSHKRIMLFTNDDDPHGNDSAK 180
Query: 579 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 758
ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL
Sbjct: 181 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISVAEDEDIGVHFEESHKLEDL 240
Query: 759 LRKVRAKETXXXXXXXXXXXXXXDVALTVGIYNLVQKAYKPFPVRLYRGTNDPVKTR 929
LRKVRAKET DVALTVGIYNLVQKAYKPFPVRLYR TN+PVKT+
Sbjct: 241 LRKVRAKETRKRVLHRLKLKLSKDVALTVGIYNLVQKAYKPFPVRLYRETNEPVKTK 297
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,506,611
Number of extensions: 448504
Number of successful extensions: 1176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002896
(956 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 492 e-136
>Sscrofa_Chr05
|| Length = 111506441
Score = 492 bits (248), Expect = e-136
Identities = 257/260 (98%)
Strand = Plus / Minus
Query: 364 caggtgctaaacgagtgcaagagctggatcggtttaaggggcaggaggggacgaagtatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294326 caggtgctaaacgagtgcaagagctggatcggtttaaggggcaggaggggacgaagtatt 4294267
Query: 424 tccaagacctgcttggccatggatctgactactcactaagtgaggtgctgtgggtctgcg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294266 tccaagacctgcttggccatggatctgactactcactaagtgaggtgctgtgggtctgcg 4294207
Query: 484 ccaacctcttcagtgacgtccaggtcaagatgagccataagaggatcatgcttttcacca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294206 ccaacctcttcagtgacgtccaggtcaagatgagccataagaggatcatgcttttcacca 4294147
Query: 544 atgacgacgacccccacggcaatgacagcgccaaagccagccgggcaaggaccaaagctg 603
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 4294146 atgacgacgacccccacggcaacgacagtgccaaagccagccgggccaggaccaaagctg 4294087
Query: 604 gggacctccgtgacacaggt 623
||||||||||||||||||||
Sbjct: 4294086 gggacctccgtgacacaggt 4294067
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 619 caggtatcttcctggacttgatgcacctgaagaagcctgggggctttgacatatccttgt 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293410 caggtatcttcctggacttgatgcacctgaagaagcctgggggctttgacatatccttgt 4293351
Query: 679 tctacagagatatcatcagtgtggcagaggatgaggacataggggttcactttgaggagt 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293350 tctacagagatatcatcagtgtggcagaggatgaggacataggggttcactttgaggagt 4293291
Query: 739 cgcacaagctcgaggacctgttgaggaaggtccgtgccaaggagaccaggaagcgtgtgc 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293290 cgcacaagctcgaggacctgttgaggaaggtccgtgccaaggagaccaggaagcgtgtgc 4293231
Query: 799 tccacaggt 807
|||||||||
Sbjct: 4293230 tccacaggt 4293222
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 225 cagtgtatccagagcgtgtacaccaataagatcataagcagtgatcgcgatctcttggca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294710 cagtgtatccagagcgtgtacaccaataagatcataagcagtgatcgcgatctcttggca 4294651
Query: 285 gtggtgttctatggtaccaagaaggacaaaaactcagtgaatttcaaaaatatctacgtc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4294650 gtggtgttctatggtaccaagaaggacaaaaactcagtgaatttcaaaaatatctacgtc 4294591
Query: 345 ctacaggaattggatagtccaggt 368
||||||||||||||||||||||||
Sbjct: 4294590 ctacaggaattggatagtccaggt 4294567
Score = 260 bits (131), Expect = 1e-66
Identities = 150/155 (96%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 803 caggttgaaacttaagctcagcaaagatgtagcgctcactgtcggcatttacaatttggt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290260 caggttgaaacttaagctcagcaaagatgtagcgctcactgtcggcatttacaatttggt 4290201
Query: 863 ccagaaggcttacaaacctttcccggtgaggctttatcggggaacaaatgacccggtgaa 922
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 4290200 ccagaaggcttacaaacctttcccggtgaggctttatcgggaaacaaatgaaccggtgaa 4290141
Query: 923 aa-caagacccggaagtttaatgtaaacacgggca 956
|| ||||||||||| ||||||||||||||| ||||
Sbjct: 4290140 aaccaagacccggacgtttaatgtaaacacaggca 4290106
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 22 agtgagcagtaaccaacatgtcagggtgggagtcttattacaaaaaccagggcgatgaag 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299785 agtgagcagtaaccaacatgtcagggtgggagtcttattacaaaaaccagggcgatgaag 4299726
Query: 82 aagaagaagaggaggagggccgtgaaacgggtg 114
|||||||||||||||||||||||||||||||||
Sbjct: 4299725 aagaagaagaggaggagggccgtgaaacgggtg 4299693
Score = 176 bits (89), Expect = 1e-41
Identities = 106/114 (92%)
Strand = Plus / Minus
Query: 114 gaagattatagatgttcaggaagagacagtttgannnnnnnggttgatgcttctagagcc 173
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 4297527 gaagattatagatgttcaggaagagatagtttgatttttttggttgatgcttctagagcc 4297468
Query: 174 atgtttgaatctcaggatgaagatgaattgactccttttgacatgagcatccag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297467 atgtttgaatctcaggatgaagatgaattgactccttttgacatgagcatccag 4297414
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,184,975
Number of extensions: 581
Number of successful extensions: 581
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 6
Length of query: 956
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 935
Effective length of database: 2,808,413,156
Effective search space: 2625866300860
Effective search space used: 2625866300860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)