Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002898
(1080 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073084.1| glutathione S-transferase kappa 1 [Bos tauru... 390 e-109
>ref|NP_001073084.1| glutathione S-transferase kappa 1 [Bos taurus].
Length = 226
Score = 390 bits (1003), Expect = e-109
Identities = 186/226 (82%), Positives = 206/226 (91%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGP+PRT+ELFYDVLSPYSWLAFE+LCRYKNIWN++LQL P+LI G ++SGNQPPAMLP
Sbjct: 1 MGPVPRTLELFYDVLSPYSWLAFEVLCRYKNIWNISLQLQPTLIGGNLRESGNQPPAMLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
KAVY++ D++ L H QVPIHFPKDFFS IL KGSLTAMRFLT VK+EHPE+LEKV RE
Sbjct: 61 HKAVYLRSDLRLLSQHHQVPIHFPKDFFSVILKKGSLTAMRFLTAVKMEHPELLEKVPRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSRDEDITEP SILAAAEKAGMS QA+ LLE VSTP+VKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPPSILAAAEKAGMSMEQAQELLEWVSTPQVKNQLKETTEAACKYGA 180
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLP+TVAHL D+THMLFGSDR+ELLAHLLGEKWMGPVPPAVNA+L
Sbjct: 181 FGLPVTVAHLQDETHMLFGSDRLELLAHLLGEKWMGPVPPAVNAKL 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,682,242
Number of extensions: 1717928
Number of successful extensions: 8206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8089
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002898
(1080 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532742.2| PREDICTED: similar to Glutathione S-transferase... 395 e-110
Alignment gi|XP_852361.1| PREDICTED: similar to Glutathione S-transferase... 272 4e-73
>ref|XP_532742.2| PREDICTED: similar to Glutathione S-transferase kappa 1 (GST 13-13)
(Glutathione S-transferase subunit 13) (GST class-kappa)
(GSTK1-1) (hGSTK1) [Canis familiaris].
Length = 226
Score = 395 bits (1015), Expect = e-110
Identities = 188/226 (83%), Positives = 207/226 (91%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRT+ELFYDVLSPYSWL FE+LCRYKNIWN+NLQL PSLIAGI KDSGNQPPA+LP
Sbjct: 1 MGPLPRTLELFYDVLSPYSWLGFEVLCRYKNIWNINLQLRPSLIAGIMKDSGNQPPALLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RKA Y+ DI+ L H+QVP+ FPKDFFS IL KGSL+AMRFLT V +EHPEMLEKVSRE
Sbjct: 61 RKAQYLINDIRLLGQHVQVPMQFPKDFFSVILEKGSLSAMRFLTAVNMEHPEMLEKVSRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSRDEDITEPQSILAAAEKAGMST QA+GLLE++ TP+VKN+LKE TEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPQSILAAAEKAGMSTEQAQGLLEKIVTPKVKNKLKENTEAACKYGA 180
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLP+TVAHLD +THMLFGSDRMELLAHLLGEKWMGPVPPA+N +L
Sbjct: 181 FGLPVTVAHLDGQTHMLFGSDRMELLAHLLGEKWMGPVPPAINPKL 226
>ref|XP_852361.1| PREDICTED: similar to Glutathione S-transferase kappa 1 (GST 13-13)
(Glutathione S-transferase subunit 13) (GST class-kappa)
(GSTK1-1) (hGSTK1) [Canis familiaris].
Length = 179
Score = 272 bits (696), Expect = 4e-73
Identities = 133/178 (74%), Positives = 153/178 (85%)
Frame = +2
Query: 251 KDSGNQPPAMLPRKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKL 430
K S NQ PA+LPRKA Y+K DI+ H+QVP+ FPKDFF IL KGSL+AMRFLT V +
Sbjct: 2 KGSRNQLPALLPRKAQYLKNDIRLRGQHVQVPMQFPKDFFFVILEKGSLSAMRFLTAVNM 61
Query: 431 EHPEMLEKVSRELWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQL 610
+HPEMLE+VSRELWM VWSRDEDITEPQS+LAAAEKAGMST QA+GLLE++ TP+VKN+L
Sbjct: 62 KHPEMLEEVSRELWMCVWSRDEDITEPQSMLAAAEKAGMSTEQAQGLLEKIVTPKVKNKL 121
Query: 611 KETTEAACKYGAFGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
KE TEA+ KY AFGLP+TVAHLD +THMLFGSDRMELL HLLGEKWMGPVP A+N +L
Sbjct: 122 KENTEASGKYRAFGLPVTVAHLDGQTHMLFGSDRMELLTHLLGEKWMGPVPAAINPKL 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,422,898
Number of extensions: 1718960
Number of successful extensions: 8425
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8314
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002898
(1080 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057001.1| glutathione S-transferase kappa 1 isoform a [Ho... 399 e-111
Alignment gi|NP_001137152.1| glutathione S-transferase kappa 1 isoform c ... 369 e-102
Alignment gi|NP_001137151.1| glutathione S-transferase kappa 1 isoform b ... 362 e-100
Alignment gi|NP_001137153.1| glutathione S-transferase kappa 1 isoform d ... 314 8e-86
>ref|NP_057001.1| glutathione S-transferase kappa 1 isoform a [Homo sapiens].
Length = 226
Score = 399 bits (1025), Expect = e-111
Identities = 188/226 (83%), Positives = 207/226 (91%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI KDSGN+PP +LP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RK +YM D+K L HHLQ+PIHFPKDF S +L KGSL+AMRFLT V LEHPEMLEK SRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSR+EDITEPQSILAAAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGA
Sbjct: 121 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA 180
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLPITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 181 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 226
>ref|NP_001137152.1| glutathione S-transferase kappa 1 isoform c [Homo sapiens].
Length = 214
Score = 369 bits (948), Expect = e-102
Identities = 177/226 (78%), Positives = 195/226 (86%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI KDSGN+PP +LP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RK +YM D+K L HHLQ+PIHFPKDF S +L KGSL+AMRFLT V LEHPEMLEK SRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSR AAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGA
Sbjct: 121 LWMRVWSR------------AAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA 168
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLPITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 169 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 214
>ref|NP_001137151.1| glutathione S-transferase kappa 1 isoform b [Homo sapiens].
Length = 282
Score = 362 bits (930), Expect = e-100
Identities = 185/282 (65%), Positives = 205/282 (72%), Gaps = 56/282 (19%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI KDSGN+PP +LP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RK +YM D+K L HHLQ+PIHFPKDF S +L KGSL+AMRFLT V LEHPEMLEK SRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 467 LWMRVWSR-------------DEDITEP-------------------------------- 511
LWMRVWSR D+ +T P
Sbjct: 121 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF 180
Query: 512 -----------QSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGAFGLP 658
QSILAAAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGAFGLP
Sbjct: 181 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 240
Query: 659 ITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
ITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 241 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 282
>ref|NP_001137153.1| glutathione S-transferase kappa 1 isoform d [Homo sapiens].
Length = 183
Score = 314 bits (805), Expect = 8e-86
Identities = 160/226 (70%), Positives = 173/226 (76%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI KDSG
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSG-------- 52
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
SL+AMRFLT V LEHPEMLEK SRE
Sbjct: 53 -----------------------------------SLSAMRFLTAVNLEHPEMLEKASRE 77
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSR+EDITEPQSILAAAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGA
Sbjct: 78 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA 137
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLPITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 138 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,336,126
Number of extensions: 1676480
Number of successful extensions: 7796
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7682
Number of HSP's successfully gapped: 6
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002898
(1080 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083831.1| glutathione S-transferase kappa 1 [Mus musculus]. 345 3e-95
>ref|NP_083831.1| glutathione S-transferase kappa 1 [Mus musculus].
Length = 226
Score = 345 bits (885), Expect = 3e-95
Identities = 164/226 (72%), Positives = 192/226 (84%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGP PR +ELFYDVLSPYSWL FE+LCRY+++WN+ LQL P+LIAGI KDSGNQPPAM+P
Sbjct: 1 MGPAPRILELFYDVLSPYSWLGFEVLCRYQHLWNIKLQLRPTLIAGIMKDSGNQPPAMVP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RK Y+ ++I L+ QVP++ PKDFF + KGS+ AMRFLTTV +E PEMLEKVSRE
Sbjct: 61 RKGQYIFKEIPLLKQFFQVPLNIPKDFFGETVKKGSINAMRFLTTVSMEQPEMLEKVSRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
+WMRVWSRDEDITE QSILAAA KAGMST QA+ LE++ST +VKN+L E T+AACKYGA
Sbjct: 121 IWMRVWSRDEDITEYQSILAAAVKAGMSTAQAQHFLEKISTQQVKNKLIENTDAACKYGA 180
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLP TVAH+D KT+MLFGSDR+ELLA+LLGEKWMGPVPP NARL
Sbjct: 181 FGLPTTVAHVDGKTYMLFGSDRLELLAYLLGEKWMGPVPPTANARL 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,414,836
Number of extensions: 1387605
Number of successful extensions: 6501
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6386
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002898
(1080 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134621.1| PREDICTED: glutathione S-transferase kappa 1... 456 e-128
Alignment gi|XP_003134623.1| PREDICTED: glutathione S-transferase kappa 1... 424 e-119
Alignment gi|XP_003134622.1| PREDICTED: glutathione S-transferase kappa 1... 421 e-118
Alignment gi|XP_003134624.1| PREDICTED: glutathione S-transferase kappa 1... 350 8e-97
>ref|XP_003134621.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 1 [Sus
scrofa].
Length = 226
Score = 456 bits (1172), Expect = e-128
Identities = 222/226 (98%), Positives = 223/226 (98%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGI KDSGNQPPAMLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RKAVYMKEDIKRL HHLQVPIHFPKDFFS ILGKGSLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 61 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSRDEDITEPQS+LAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 180
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL
Sbjct: 181 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 226
>ref|XP_003134623.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 3 [Sus
scrofa].
Length = 214
Score = 424 bits (1091), Expect = e-119
Identities = 211/226 (93%), Positives = 211/226 (93%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGI KDSGNQPPAMLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RKAVYMKEDIKRL HHLQVPIHFPKDFFS ILGKGSLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 61 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSR AAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSR------------AAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 168
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL
Sbjct: 169 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 214
>ref|XP_003134622.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 2 [Sus
scrofa].
Length = 232
Score = 421 bits (1082), Expect = e-118
Identities = 206/210 (98%), Positives = 207/210 (98%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGI KDSGNQPPAMLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 60
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
RKAVYMKEDIKRL HHLQVPIHFPKDFFS ILGKGSLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 61 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 120
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSRDEDITEPQS+LAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 180
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLL 736
FGLPITVAHLDDKTHMLFGSDRMELLAHLL
Sbjct: 181 FGLPITVAHLDDKTHMLFGSDRMELLAHLL 210
>ref|XP_003134624.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 4 [Sus
scrofa].
Length = 183
Score = 350 bits (898), Expect = 8e-97
Identities = 181/226 (80%), Positives = 182/226 (80%)
Frame = +2
Query: 107 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGIFKDSGNQPPAMLP 286
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGI KDSG
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSG-------- 52
Query: 287 RKAVYMKEDIKRLEHHLQVPIHFPKDFFSAILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 466
SLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 53 -----------------------------------SLTAMRFLTTVKLEHPEMLEKVSRE 77
Query: 467 LWMRVWSRDEDITEPQSILAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 646
LWMRVWSRDEDITEPQS+LAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 78 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 137
Query: 647 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 784
FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL
Sbjct: 138 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 183
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,466,591
Number of extensions: 1162868
Number of successful extensions: 5356
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5277
Number of HSP's successfully gapped: 5
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002898
(1080 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 632 e-179
Sscrofa_Chr18 335 3e-89
>Sscrofa_Chr09
|| Length = 153670197
Score = 632 bits (319), Expect = e-179
Identities = 578/662 (87%), Gaps = 13/662 (1%)
Strand = Plus / Minus
Query: 129 tggagcttttctacgatgtgctgtccccctactcctggctggccttcgagatcctgtgcc 188
||||||| |||| |||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 132884746 tggagctcttctgtgatgtgctgtccccctcctcctggctgtccttcgaggctctgtgct 132884687
Query: 189 ggtacaagaacatctggaatgtcaacctgcagctgtgcccaagcttaattgcagggatct 248
||||||||||||||||||| |||| ||| || ||||||| ||||||||||
Sbjct: 132884686 ggtacaagaacatctggaacgtcagcct-------tg----agcttaagtgcagggatca 132884638
Query: 249 tcaaagacagcggaaaccagccaccagctatgcttccccgcaaagctgtgtacatgaaag 308
| ||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct: 132884637 tgaaagacagcagaaaccagctgccagctatgcttccccgcaaagctctgtacttgaaag 132884578
Query: 309 aggacattaagcgactggaacaccatctccaggttcccatccacttccccaaggatttct 368
|||||||||| |||| || |||||||||||| || |||||||||| | |||||||
Sbjct: 132884577 gtgacattaagctcctgggactgcatctccaggtttccctccacttcccgagagatttct 132884518
Query: 369 tctctgcgatccttggaaaaggaagtttgacagccatgcgcttcctcaccaccgtgaaac 428
|||||| || ||||| ||||||||||||||||||||||| ||||||| | | || ||||
Sbjct: 132884517 tctctgtgacccttgaaaaaggaagtttgacagccatgcacttcctcctctcagtaaaac 132884458
Query: 429 tggagcaccccgagatgctggagaaagtgtccagggaactgtggatgcgcgtctggtcac 488
|||||||||| | ||||||||||||||||||| |||||| | |||||| | |||||||||
Sbjct: 132884457 tggagcacccggcgatgctggagaaagtgtccggggaacagaggatgcacatctggtcac 132884398
Query: 489 gggacgaagacatcacagagccccagagcatcctggccgcggcagagaaggccggcatgt 548
||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||
Sbjct: 132884397 gggacgaagacatcacagagccccagagcatcctgtccacagcagagaaggctggcatgt 132884338
Query: 549 ccacaggacaggcccgaggactcctggaaagggtctcaacaccagaggtgaagaaccagc 608
||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 132884337 ccacaggacaggccc-aggacttctggaaagggtctcaacaccacaggtgaagaaccagc 132884279
Query: 609 tcaaggagaccactgaggcggcctgcaaatatggggcctttgggctgcccatcactgtgg 668
||||||||||||||| ||| ||||||| | ||||| |||||||||||||||| |||||
Sbjct: 132884278 tcaaggagaccactggggcagcctgcagacctggggtctttgggctgcccatccctgtga 132884219
Query: 669 cccacctggatgacaaaacacacatgctctttggctctgaccggatggagctgctggcac 728
|||||||| |||||| ||| |||||||| | ||||||||||| ||||||| |||||||||
Sbjct: 132884218 cccacctgtatgacagaacccacatgctgtctggctctgacccgatggagttgctggcac 132884159
Query: 729 acctgctgggcgagaagtggatgggccctgtgcctccagctgtaaatgccagactttaag 788
||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 132884158 acctgctggaagagaagtggat-ggccctgtgcctccatctgtaaatgccagactttaag 132884100
Query: 789 ga 790
||
Sbjct: 132884099 ga 132884098
>Sscrofa_Chr18
|| Length = 61220071
Score = 335 bits (169), Expect = 3e-89
Identities = 175/177 (98%)
Strand = Plus / Minus
Query: 2 actctgcgcctggagccgcggcctggacgctgcgcgcaggagtacgggaacgatcaacgc 61
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 7239942 actctgcgcctggagccgcggcctggacgctgcgcgcaggagaaagggaacgatcaacgc 7239883
Query: 62 tcggcttgctgggccgcgcttgcttctcagttgtccggctgcagcatggggcctctcccg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239882 tcggcttgctgggccgcgcttgcttctcagttgtccggctgcagcatggggcctctcccg 7239823
Query: 122 cggaccgtggagcttttctacgatgtgctgtccccctactcctggctggccttcgag 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239822 cggaccgtggagcttttctacgatgtgctgtccccctactcctggctggccttcgag 7239766
Score = 272 bits (137), Expect = 4e-70
Identities = 149/153 (97%)
Strand = Plus / Minus
Query: 737 ggcgagaagtggatgggccctgtgcctccagctgtaaatgccagactttaaggaagcaaa 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234685 ggcgagaagtggatgggccctgtgcctccagctgtaaatgccagactttaaggaagcaaa 7234626
Query: 797 gctgttggtataaacagaagaccatctgcttacccctccagcgcggggcctgggactctg 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234625 gctgttggtataaacagaagaccatctgcttacccctccagcgcggggcctgggactctg 7234566
Query: 857 ctttcctacctgacaaaacttcctctgtggccc 889
|||||||| |||||| | ||||||||||||||
Sbjct: 7234565 ctttcctatctgacagagtttcctctgtggccc 7234533
Score = 236 bits (119), Expect = 2e-59
Identities = 128/131 (97%)
Strand = Plus / Minus
Query: 260 ggaaaccagccaccagctatgcttccccgcaaagctgtgtacatgaaagaggacattaag 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238980 ggaaaccagccaccagctatgcttccccgcaaagctgtgtacatgaaagaggacattaag 7238921
Query: 320 cgactggaacaccatctccaggttcccatccacttccccaaggatttcttctctgcgatc 379
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 7238920 cgactgggacaccatctccaggttcccatccacttccccaaggatttcttctctacaatc 7238861
Query: 380 cttggaaaagg 390
|||||||||||
Sbjct: 7238860 cttggaaaagg 7238850
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 527 gcggcagagaaggccggcatgtccacaggacaggcccgaggactcctggaaagggtctca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235921 gcggcagagaaggccggcatgtccacaggacaggcccgaggactcctggaaagggtctca 7235862
Query: 587 acaccagaggtgaagaaccagctcaaggagaccactgaggcggcctgcaaatatgggg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235861 acaccagaggtgaagaaccagctcaaggagaccactgaggcggcctgcaaatatgggg 7235804
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 388 aggaagtttgacagccatgcgcttcctcaccaccgtgaaactggagcaccccgagatgct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238548 aggaagtttgacagccatgcgcttcctcaccaccgtgaaactggagcaccccgagatgct 7238489
Query: 448 ggagaaagtgtccagggaactgtggatgcgcgtctggtcacggg 491
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238488 ggagaaagtgtccagggaactgtggatgcgcgtctggtcacggg 7238445
Score = 182 bits (92), Expect = 3e-43
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 643 ggcctttgggctgcccatcactgtggcccacctggatgacaaaacacacatgctctttgg 702
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7235165 ggcctttgggctgcccatcactgtggctcacctggatgacaaaacacacatgctctttgg 7235106
Query: 703 ctctgaccggatggagctgctggcacacctgctggg 738
||||||||||||||||||||||||||||||||||||
Sbjct: 7235105 ctctgaccggatggagctgctggcacacctgctggg 7235070
Score = 161 bits (81), Expect = 1e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 177 agatcctgtgccggtacaagaacatctggaatgtcaacctgcagctgtgcccaagcttaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239251 agatcctgtgccggtacaagaacatctggaatgtcaacctgcagctgtgcccaagcttaa 7239192
Query: 237 ttgcagggatcttcaaagacagcgg 261
||||||||||||| |||||||||||
Sbjct: 7239191 ttgcagggatcttaaaagacagcgg 7239167
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 490 ggacgaagacatcacagagccccagagcatcctggccg 527
|||||||||||||||||||||||||||| |||||||||
Sbjct: 7238165 ggacgaagacatcacagagccccagagcgtcctggccg 7238128
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,516,064
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 10
Length of query: 1080
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1059
Effective length of database: 2,808,413,156
Effective search space: 2974109532204
Effective search space used: 2974109532204
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)