Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002900
(1137 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077229.1| zinc transporter 7 [Bos taurus]. 429 e-120
Alignment gi|NP_001179103.1| zinc transporter 5 [Bos taurus]. 167 1e-41
Alignment gi|XP_002696329.1| PREDICTED: solute carrier family 30 (zinc tr... 167 1e-41
Alignment gi|NP_001179109.1| zinc transporter 10 [Bos taurus]. 73 5e-13
Alignment gi|XP_002694022.1| PREDICTED: solute carrier family 30, member ... 73 5e-13
Alignment gi|NP_001192822.1| zinc transporter 1 [Bos taurus]. 67 2e-11
Alignment gi|XP_002694311.1| PREDICTED: solute carrier family 30 (zinc tr... 67 2e-11
Alignment gi|NP_001069234.1| zinc transporter 6 [Bos taurus]. 61 2e-09
Alignment gi|XP_002690986.1| PREDICTED: solute carrier family 30 (zinc tr... 60 3e-09
Alignment gi|XP_613527.3| PREDICTED: solute carrier family 30 (zinc trans... 60 3e-09
>ref|NP_001077229.1| zinc transporter 7 [Bos taurus].
Length = 376
Score = 429 bits (1102), Expect(2) = e-120
Identities = 227/303 (74%), Positives = 228/303 (75%)
Frame = +2
Query: 191 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSN 370
MLPLSIKDDEYKPPKFNLF KISGWFRSILSDKTSRN VELLYGIWSN
Sbjct: 1 MLPLSIKDDEYKPPKFNLFRKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSN 60
Query: 371 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 550
CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF
Sbjct: 61 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 120
Query: 551 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFN 730
FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFK LFN
Sbjct: 121 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKHGGHGHSHGSGHGHSHSLFN 180
Query: 731 GALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLH 910
GAL+Q HGHGDHCH HELK PSLKETTGPSRQILQGVFLH
Sbjct: 181 GALDQTHGHGDHCHSHELKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLH 240
Query: 911 ILADTLGSIGVIASAIMMQNFGLMIADXXXXXXXXXXXXXXXXXXFRESVXILMQRTPPL 1090
ILADTLGSIGVIASAIMMQNFGLMIAD RESV ILMQRTPPL
Sbjct: 241 ILADTLGSIGVIASAIMMQNFGLMIADPICSILIAMLIVISVIPLLRESVGILMQRTPPL 300
Query: 1091 LXN 1099
L N
Sbjct: 301 LEN 303
Score = 24.3 bits (51), Expect(2) = e-120
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1102 LXQCYQRVQXLQ 1137
L QCYQRVQ LQ
Sbjct: 305 LPQCYQRVQQLQ 316
>ref|NP_001179103.1| zinc transporter 5 [Bos taurus].
Length = 769
Score = 167 bits (424), Expect = 1e-41
Identities = 98/273 (35%), Positives = 134/273 (49%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 410 KQILEENDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 469
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFL+ AFF+F E V R + PP++ L VS+
Sbjct: 470 MSRWKATRIFSYGYGRIEILSGFINGLFLVVIAFFVFMESVARLIDPPELDTHMLTPVSV 529
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + AHGH DH HGH
Sbjct: 530 GGLIVNLIGICAFSHAHNHSHGASQGSCHSSDHSHS-HHAHGHSDHGHGH---------- 578
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S ++GVFLH+LADTLGSIGVI S I+++ FG IA
Sbjct: 579 -------------GHSHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTILIEQFGWFIA 625
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 626 DPLCSLFIAVLIFLSVVPLIKDACQVLLLRLPP 658
>ref|XP_002696329.1| PREDICTED: solute carrier family 30 (zinc transporter), member 5 [Bos
taurus].
Length = 769
Score = 167 bits (424), Expect = 1e-41
Identities = 98/273 (35%), Positives = 134/273 (49%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 410 KQILEENDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 469
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFL+ AFF+F E V R + PP++ L VS+
Sbjct: 470 MSRWKATRIFSYGYGRIEILSGFINGLFLVVIAFFVFMESVARLIDPPELDTHMLTPVSV 529
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + AHGH DH HGH
Sbjct: 530 GGLIVNLIGICAFSHAHNHSHGASQGSCHSSDHSHS-HHAHGHSDHGHGH---------- 578
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S ++GVFLH+LADTLGSIGVI S I+++ FG IA
Sbjct: 579 -------------GHSHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTILIEQFGWFIA 625
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 626 DPLCSLFIAVLIFLSVVPLIKDACQVLLLRLPP 658
>ref|NP_001179109.1| zinc transporter 10 [Bos taurus].
Length = 486
Score = 72.8 bits (177), Expect = 5e-13
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKW-RDNDAFSYGYVRAEVLAGFV 520
EL+ G N + L+SDSF+M D ++ GL+A I++ R +YGY RAEV+
Sbjct: 25 ELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYIARRPRGGLGATYGYARAEVVGALS 84
Query: 521 NGLFLIFTAFFIFSEGVERALAPPDVHH-ERLLLVSILGFVVNLVGIFVFK 670
N +FL F IF E V R P + E +L+V LG VN+VG+ +F+
Sbjct: 85 NAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGALGLAVNVVGLLIFQ 135
>ref|XP_002694022.1| PREDICTED: solute carrier family 30, member 10 [Bos taurus].
Length = 486
Score = 72.8 bits (177), Expect = 5e-13
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKW-RDNDAFSYGYVRAEVLAGFV 520
EL+ G N + L+SDSF+M D ++ GL+A I++ R +YGY RAEV+
Sbjct: 25 ELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYIARRPRGGLGATYGYARAEVVGALS 84
Query: 521 NGLFLIFTAFFIFSEGVERALAPPDVHH-ERLLLVSILGFVVNLVGIFVFK 670
N +FL F IF E V R P + E +L+V LG VN+VG+ +F+
Sbjct: 85 NAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGALGLAVNVVGLLIFQ 135
>ref|NP_001192822.1| zinc transporter 1 [Bos taurus].
Length = 506
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +2
Query: 341 VELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISK-WRDNDAFSYGYVRAEVLAGF 517
+E++ + L ++SDSFHM D A++ L A ++ ++G++RAEV+
Sbjct: 24 LEVVVSRVTTSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGAL 83
Query: 518 VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNLVGIFVFKXXXXXXXX 694
VN +FL F I E +ER + P ++ ++ V + G VVN++G+ +F
Sbjct: 84 VNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVFGVGVAGLVVNVLGLCLFHHHSG---- 139
Query: 695 XXXXXXXXXLFNGALEQAHGHGDHCHG 775
F +H HG H HG
Sbjct: 140 ----------FGDDSSHSHSHGGHSHG 156
>ref|XP_002694311.1| PREDICTED: solute carrier family 30 (zinc transporter), member
1-like [Bos taurus].
Length = 506
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +2
Query: 341 VELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISK-WRDNDAFSYGYVRAEVLAGF 517
+E++ + L ++SDSFHM D A++ L A ++ ++G++RAEV+
Sbjct: 24 LEVVVSRVTTSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGAL 83
Query: 518 VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNLVGIFVFKXXXXXXXX 694
VN +FL F I E +ER + P ++ ++ V + G VVN++G+ +F
Sbjct: 84 VNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVFGVGVAGLVVNVLGLCLFHHHSG---- 139
Query: 695 XXXXXXXXXLFNGALEQAHGHGDHCHG 775
F +H HG H HG
Sbjct: 140 ----------FGDDSSHSHSHGGHSHG 156
>ref|NP_001069234.1| zinc transporter 6 [Bos taurus].
Length = 461
Score = 61.2 bits (147), Expect = 2e-09
Identities = 37/143 (25%), Positives = 69/143 (48%)
Frame = +2
Query: 221 YKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFH 400
++ P+ + FGK+ FR + +D+ S L++ +N + L + ++
Sbjct: 7 FRKPQRSFFGKLLQEFRLVAADRRSWKILLFGAINLTCTGFLLMWCSSTNSIALTAYTYL 66
Query: 401 MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERA 580
FD +++ L + + + + A+S+G+ R EVLA F + + A FI E ER
Sbjct: 67 TIFDLFSLITCLVSYWVMMRKPSPAYSFGFERLEVLAVFASTVLAQLGALFILKESAERF 126
Query: 581 LAPPDVHHERLLLVSILGFVVNL 649
L P++H RLL+ + + NL
Sbjct: 127 LEQPEIHTGRLLVGTFVALSFNL 149
>ref|XP_002690986.1| PREDICTED: solute carrier family 30 (zinc transporter), member
4-like [Bos taurus].
Length = 429
Score = 60.5 bits (145), Expect = 3e-09
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 9/217 (4%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVN 523
EL+ G +N L +++D+ HM D +AI+ L A +S F++G+ R EVL+ ++
Sbjct: 128 ELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMIS 187
Query: 524 GLFLIFTAFFIFSEGVERALAPP-DVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXX 700
L + F+ E V+R + +++ + +L+ + +G VN++ F+
Sbjct: 188 VLLVYILMGFLLYEAVQRTIHMKYEINGDIMLITAAIGVAVNVIMGFL------------ 235
Query: 701 XXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPS 880
L Q+ H H H H L PS TTGP
Sbjct: 236 ------------LNQSGHH--HAHSHSL----------------------PSNSPTTGPR 259
Query: 881 RQILQG--------VFLHILADTLGSIGVIASAIMMQ 967
QG F+H L D + S+GV+ +A +++
Sbjct: 260 CGHNQGQDSLAVRAAFVHALGDLVQSVGVLIAAYIIR 296
>ref|XP_613527.3| PREDICTED: solute carrier family 30 (zinc transporter), member
4-like [Bos taurus].
Length = 429
Score = 60.5 bits (145), Expect = 3e-09
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 9/217 (4%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVN 523
EL+ G +N L +++D+ HM D +AI+ L A +S F++G+ R EVL+ ++
Sbjct: 128 ELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMIS 187
Query: 524 GLFLIFTAFFIFSEGVERALAPP-DVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXX 700
L + F+ E V+R + +++ + +L+ + +G VN++ F+
Sbjct: 188 VLLVYILMGFLLYEAVQRTIHMKYEINGDIMLITAAIGVAVNVIMGFL------------ 235
Query: 701 XXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPS 880
L Q+ H H H H L PS TTGP
Sbjct: 236 ------------LNQSGHH--HAHSHSL----------------------PSNSPTTGPR 259
Query: 881 RQILQG--------VFLHILADTLGSIGVIASAIMMQ 967
QG F+H L D + S+GV+ +A +++
Sbjct: 260 CGHNQGQDSLAVRAAFVHALGDLVQSVGVLIAAYIIR 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,288,422
Number of extensions: 749786
Number of successful extensions: 2001
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 15
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002900
(1137 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537050.2| PREDICTED: similar to zinc transporter like 2 [... 442 e-128
Alignment gi|XP_544365.2| PREDICTED: similar to zinc transporter ZTL1 iso... 166 3e-41
Alignment gi|XP_850350.1| PREDICTED: similar to zinc transporter ZTL1 iso... 166 3e-41
Alignment gi|XP_532924.2| PREDICTED: similar to solute carrier family 30 ... 59 7e-09
Alignment gi|XP_544664.2| PREDICTED: similar to solute carrier family 30 ... 57 4e-08
>ref|XP_537050.2| PREDICTED: similar to zinc transporter like 2 [Canis familiaris].
Length = 672
Score = 442 bits (1137), Expect(4) = e-128
Identities = 235/314 (74%), Positives = 236/314 (75%)
Frame = +2
Query: 158 GVDPALRRAEKMLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXX 337
GV PA RRAEKMLPLSIKDDEYKPPKFNLF KISGWFRSILSDKTSRN
Sbjct: 286 GVAPAPRRAEKMLPLSIKDDEYKPPKFNLFRKISGWFRSILSDKTSRNLFFFLCLNLSFA 345
Query: 338 XVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGF 517
VELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGF
Sbjct: 346 FVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGF 405
Query: 518 VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXX 697
VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFK
Sbjct: 406 VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKHGGHGHSHG 465
Query: 698 XXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGP 877
LFNG L+QAHGHGDHCH HELK PSLKET GP
Sbjct: 466 SGHGHSHSLFNGVLDQAHGHGDHCHSHELKHGAAHSHDHAHGHGHFHSHDGPSLKETAGP 525
Query: 878 SRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADXXXXXXXXXXXXXXXXXXFRES 1057
SRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIAD RES
Sbjct: 526 SRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAMLIVVSVIPLLRES 585
Query: 1058 VXILMQRTPPLLXN 1099
V ILMQRTPPLL N
Sbjct: 586 VGILMQRTPPLLEN 599
Score = 27.3 bits (59), Expect(4) = e-128
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 3 RAGSRRVPGCV 35
RAGSRRVPGCV
Sbjct: 238 RAGSRRVPGCV 248
Score = 26.2 bits (56), Expect(4) = e-128
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 64 WKRRAARDKLRG 99
WKRRAARD+ RG
Sbjct: 255 WKRRAARDRRRG 266
Score = 24.3 bits (51), Expect(4) = e-128
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1102 LXQCYQRVQXLQ 1137
L QCYQRVQ LQ
Sbjct: 601 LPQCYQRVQQLQ 612
>ref|XP_544365.2| PREDICTED: similar to zinc transporter ZTL1 isoform 1 isoform 1
[Canis familiaris].
Length = 725
Score = 166 bits (421), Expect = 3e-41
Identities = 97/273 (35%), Positives = 134/273 (49%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 368 KQILEENDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 427
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFL+ AFF+F E V R + PP++ L VS+
Sbjct: 428 MSRWKATRIFSYGYGRIEILSGFINGLFLMVIAFFVFVESVARLIDPPELDTHMLTPVSV 487
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + HGH DH HGH
Sbjct: 488 GGLIVNLIGICAFSHAHNHNHGASQGSCHSSDHSHS-HHMHGHSDHGHGH---------- 536
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S T ++GVFLH+LADTLGSIGVI S ++++ FG IA
Sbjct: 537 ---------------SHGSTGRGMNANMRGVFLHVLADTLGSIGVIVSTVLIEQFGWFIA 581
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 582 DPLCSLFIAVLIFLSVFPLIKDAYQVLLLRLPP 614
>ref|XP_850350.1| PREDICTED: similar to zinc transporter ZTL1 isoform 1 isoform 2
[Canis familiaris].
Length = 766
Score = 166 bits (421), Expect = 3e-41
Identities = 97/273 (35%), Positives = 134/273 (49%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 409 KQILEENDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 468
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFL+ AFF+F E V R + PP++ L VS+
Sbjct: 469 MSRWKATRIFSYGYGRIEILSGFINGLFLMVIAFFVFVESVARLIDPPELDTHMLTPVSV 528
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + HGH DH HGH
Sbjct: 529 GGLIVNLIGICAFSHAHNHNHGASQGSCHSSDHSHS-HHMHGHSDHGHGH---------- 577
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S T ++GVFLH+LADTLGSIGVI S ++++ FG IA
Sbjct: 578 ---------------SHGSTGRGMNANMRGVFLHVLADTLGSIGVIVSTVLIEQFGWFIA 622
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 623 DPLCSLFIAVLIFLSVFPLIKDAYQVLLLRLPP 655
>ref|XP_532924.2| PREDICTED: similar to solute carrier family 30 (zinc transporter),
member 6 [Canis familiaris].
Length = 567
Score = 59.3 bits (142), Expect = 7e-09
Identities = 36/143 (25%), Positives = 68/143 (47%)
Frame = +2
Query: 221 YKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFH 400
++ P+ + FGK+ FR + +D+ S L++ +N + L + ++
Sbjct: 113 FRKPQRSFFGKLLQEFRLVAADRRSWKILLFGAINLTCTGFLLMWCSSTNSIALTAYTYL 172
Query: 401 MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERA 580
FD +++ L + + + + +S+G+ R EVLA F + + A FI E ER
Sbjct: 173 TIFDLFSLMTCLISYWVMMKKPSPVYSFGFERLEVLAVFASTVLAQLGALFILKESAERF 232
Query: 581 LAPPDVHHERLLLVSILGFVVNL 649
L P++H RLL+ + + NL
Sbjct: 233 LEQPEIHTGRLLVGTFVALSFNL 255
>ref|XP_544664.2| PREDICTED: similar to solute carrier family 30 (zinc transporter),
member 4 [Canis familiaris].
Length = 584
Score = 56.6 bits (135), Expect = 4e-08
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVN 523
EL+ G +N L +++D+ HM D +AI+ L A +S F++G+ R EVL+ ++
Sbjct: 284 ELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMIS 343
Query: 524 GLFLIFTAFFIFSEGVERAL-APPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXX 700
L + F+ E V+R + +++ + +L+ + +G VN++ F+
Sbjct: 344 VLLVYILMGFLLYEAVQRTIHMKYEINGDIMLITAAVGVAVNVIMGFL------------ 391
Query: 701 XXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPS 880
L Q+ G H H H L + G
Sbjct: 392 ------------LNQS---GHHAHSHSL--------------PSNSPTIGSGCRHNHGQD 422
Query: 881 RQILQGVFLHILADTLGSIGVIASAIMMQ 967
++ F+H L D + S+GV+ +A +++
Sbjct: 423 SLAVRAAFVHALGDLVQSVGVLIAAYIIR 451
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,866,855
Number of extensions: 777836
Number of successful extensions: 2312
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2298
Number of HSP's successfully gapped: 10
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002900
(1137 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138356.1| zinc transporter 7 [Homo sapiens]. 428 e-120
Alignment gi|NP_598003.2| zinc transporter 7 [Homo sapiens]. 428 e-120
Alignment gi|NP_075053.2| zinc transporter 5 isoform 1 [Homo sapiens]. 169 4e-42
Alignment gi|NP_061183.2| zinc transporter 10 [Homo sapiens]. 76 7e-14
Alignment gi|NP_067017.2| zinc transporter 1 [Homo sapiens]. 70 4e-12
Alignment gi|NP_001180443.1| zinc transporter 6 isoform 3 [Homo sapiens]. 60 4e-09
Alignment gi|NP_060434.2| zinc transporter 6 isoform 2 [Homo sapiens]. 60 4e-09
Alignment gi|NP_037441.2| zinc transporter 4 [Homo sapiens]. 55 1e-07
Alignment gi|NP_001180444.1| zinc transporter 6 isoform 4 [Homo sapiens]. 50 3e-06
>ref|NP_001138356.1| zinc transporter 7 [Homo sapiens].
Length = 376
Score = 428 bits (1101), Expect(2) = e-120
Identities = 226/303 (74%), Positives = 229/303 (75%)
Frame = +2
Query: 191 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSN 370
MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRN VELLYGIWSN
Sbjct: 1 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSN 60
Query: 371 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 550
CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF
Sbjct: 61 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 120
Query: 551 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFN 730
FIFSEGVERALAPPDVHHERLLLVSILGFVVNL+GIFVFK LFN
Sbjct: 121 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFN 180
Query: 731 GALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLH 910
GAL+QAHGH DHCH HE+K PSLKETTGPSRQILQGVFLH
Sbjct: 181 GALDQAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLH 240
Query: 911 ILADTLGSIGVIASAIMMQNFGLMIADXXXXXXXXXXXXXXXXXXFRESVXILMQRTPPL 1090
ILADTLGSIGVIASAIMMQNFGLMIAD RESV ILMQRTPPL
Sbjct: 241 ILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPL 300
Query: 1091 LXN 1099
L N
Sbjct: 301 LEN 303
Score = 24.3 bits (51), Expect(2) = e-120
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1102 LXQCYQRVQXLQ 1137
L QCYQRVQ LQ
Sbjct: 305 LPQCYQRVQQLQ 316
>ref|NP_598003.2| zinc transporter 7 [Homo sapiens].
Length = 376
Score = 428 bits (1101), Expect(2) = e-120
Identities = 226/303 (74%), Positives = 229/303 (75%)
Frame = +2
Query: 191 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSN 370
MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRN VELLYGIWSN
Sbjct: 1 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSN 60
Query: 371 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 550
CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF
Sbjct: 61 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 120
Query: 551 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFN 730
FIFSEGVERALAPPDVHHERLLLVSILGFVVNL+GIFVFK LFN
Sbjct: 121 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFN 180
Query: 731 GALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLH 910
GAL+QAHGH DHCH HE+K PSLKETTGPSRQILQGVFLH
Sbjct: 181 GALDQAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLH 240
Query: 911 ILADTLGSIGVIASAIMMQNFGLMIADXXXXXXXXXXXXXXXXXXFRESVXILMQRTPPL 1090
ILADTLGSIGVIASAIMMQNFGLMIAD RESV ILMQRTPPL
Sbjct: 241 ILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPL 300
Query: 1091 LXN 1099
L N
Sbjct: 301 LEN 303
Score = 24.3 bits (51), Expect(2) = e-120
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1102 LXQCYQRVQXLQ 1137
L QCYQRVQ LQ
Sbjct: 305 LPQCYQRVQQLQ 316
>ref|NP_075053.2| zinc transporter 5 isoform 1 [Homo sapiens].
Length = 765
Score = 169 bits (428), Expect = 4e-42
Identities = 98/273 (35%), Positives = 134/273 (49%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 408 KQILEESDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 467
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFLI AFF+F E V R + PP++ L VS+
Sbjct: 468 MSRWKATRIFSYGYGRIEILSGFINGLFLIVIAFFVFMESVARLIDPPELDTHMLTPVSV 527
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + HGH DH HGH
Sbjct: 528 GGLIVNLIGICAFSHAHSHAHGASQGSCHSSDHSHS-HHMHGHSDHGHGH---------- 576
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S G ++GVFLH+LADTLGSIGVI S ++++ FG IA
Sbjct: 577 ---------------SHGSAGGGMNANMRGVFLHVLADTLGSIGVIVSTVLIEQFGWFIA 621
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 622 DPLCSLFIAILIFLSVVPLIKDACQVLLLRLPP 654
>ref|NP_061183.2| zinc transporter 10 [Homo sapiens].
Length = 485
Score = 75.9 bits (185), Expect = 7e-14
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFS--YGYVRAEVLAGF 517
EL+ G N + L+SDSF+M D ++ GL+A I++ R FS YGY RAEV+
Sbjct: 25 ELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYIAR-RPTRGFSATYGYARAEVVGAL 83
Query: 518 VNGLFLIFTAFFIFSEGVERALAPPDVHH-ERLLLVSILGFVVNLVGIFVFK 670
N +FL F IF E V R P + E +L+V +LG +VN+VG+ +F+
Sbjct: 84 SNAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGVLGLLVNVVGLLIFQ 135
>ref|NP_067017.2| zinc transporter 1 [Homo sapiens].
Length = 507
Score = 70.1 bits (170), Expect = 4e-12
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Frame = +2
Query: 341 VELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISK-WRDNDAFSYGYVRAEVLAGF 517
+E++ ++ L ++SDSFHM D A++ L A ++ ++G++RAEV+
Sbjct: 24 LEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGAL 83
Query: 518 VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNLVGIFVFKXXXXXXXX 694
VN +FL F I E +ER + P ++ ++L V + G +VN++G+ +F
Sbjct: 84 VNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVGVAGLLVNVLGLCLFHHHSG---- 139
Query: 695 XXXXXXXXXLFNGALEQAHGHGDHCHGHEL 784
F+ H HG H HGH L
Sbjct: 140 ----------FSQDSGHGHSHGGHGHGHGL 159
>ref|NP_001180443.1| zinc transporter 6 isoform 3 [Homo sapiens].
Length = 438
Score = 60.1 bits (144), Expect = 4e-09
Identities = 36/143 (25%), Positives = 69/143 (48%)
Frame = +2
Query: 221 YKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFH 400
++ P+ + FGK+ FR + +D+ S L++ +N + L + ++
Sbjct: 7 FRKPQRSFFGKLLREFRLVAADRRSWKILLFGVINLICTGFLLMWCSSTNSIALTAYTYL 66
Query: 401 MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERA 580
FD +++ L + ++ + + +S+G+ R EVLA F + + A FI E ER
Sbjct: 67 TIFDLFSLMTCLISYWVTLRKPSPVYSFGFERLEVLAVFASTVLAQLGALFILKESAERF 126
Query: 581 LAPPDVHHERLLLVSILGFVVNL 649
L P++H RLL+ + + NL
Sbjct: 127 LEQPEIHTGRLLVGTFVALCFNL 149
>ref|NP_060434.2| zinc transporter 6 isoform 2 [Homo sapiens].
Length = 461
Score = 60.1 bits (144), Expect = 4e-09
Identities = 36/143 (25%), Positives = 69/143 (48%)
Frame = +2
Query: 221 YKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFH 400
++ P+ + FGK+ FR + +D+ S L++ +N + L + ++
Sbjct: 7 FRKPQRSFFGKLLREFRLVAADRRSWKILLFGVINLICTGFLLMWCSSTNSIALTAYTYL 66
Query: 401 MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERA 580
FD +++ L + ++ + + +S+G+ R EVLA F + + A FI E ER
Sbjct: 67 TIFDLFSLMTCLISYWVTLRKPSPVYSFGFERLEVLAVFASTVLAQLGALFILKESAERF 126
Query: 581 LAPPDVHHERLLLVSILGFVVNL 649
L P++H RLL+ + + NL
Sbjct: 127 LEQPEIHTGRLLVGTFVALCFNL 149
>ref|NP_037441.2| zinc transporter 4 [Homo sapiens].
Length = 429
Score = 55.1 bits (131), Expect = 1e-07
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVN 523
EL+ G +N L +++D+ HM D +AI+ L A +S F++G+ R EVL+ ++
Sbjct: 128 ELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMIS 187
Query: 524 GLFLIFTAFFIFSEGVERAL-APPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXX 700
L + F+ E V+R + +++ + +L+ + +G VN++
Sbjct: 188 VLLVYILMGFLLYEAVQRTIHMNYEINGDIMLITAAVGVAVNVI---------------- 231
Query: 701 XXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPS 880
G L GH H H H L + G
Sbjct: 232 ---------MGFLLNQSGH-RHSHSHSL--------------PSNSPTRGSGCERNHGQD 267
Query: 881 RQILQGVFLHILADTLGSIGVIASAIMMQ 967
++ F+H L D + S+GV+ +A +++
Sbjct: 268 SLAVRAAFVHALGDLVQSVGVLIAAYIIR 296
>ref|NP_001180444.1| zinc transporter 6 isoform 4 [Homo sapiens].
Length = 432
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/95 (28%), Positives = 50/95 (52%)
Frame = +2
Query: 365 SNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFT 544
+N + L + ++ FD +++ L + ++ + + +S+G+ R EVLA F + +
Sbjct: 26 TNSIALTAYTYLTIFDLFSLMTCLISYWVTLRKPSPVYSFGFERLEVLAVFASTVLAQLG 85
Query: 545 AFFIFSEGVERALAPPDVHHERLLLVSILGFVVNL 649
A FI E ER L P++H RLL+ + + NL
Sbjct: 86 ALFILKESAERFLEQPEIHTGRLLVGTFVALCFNL 120
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,150,844
Number of extensions: 762426
Number of successful extensions: 2292
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2273
Number of HSP's successfully gapped: 11
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002900
(1137 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075703.1| zinc transporter 7 [Mus musculus]. 410 e-115
Alignment gi|NP_075023.2| zinc transporter 5 [Mus musculus]. 170 2e-42
Alignment gi|NP_001028458.1| zinc transporter 10 [Mus musculus]. 72 8e-13
Alignment gi|NP_033605.1| zinc transporter 1 [Mus musculus]. 64 2e-10
Alignment gi|NP_659047.2| zinc transporter 6 [Mus musculus]. 59 5e-09
Alignment gi|NP_035904.2| zinc transporter 4 [Mus musculus]. 59 5e-09
>ref|NP_075703.1| zinc transporter 7 [Mus musculus].
Length = 378
Score = 410 bits (1054), Expect(2) = e-115
Identities = 220/305 (72%), Positives = 222/305 (72%), Gaps = 2/305 (0%)
Frame = +2
Query: 191 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSN 370
MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRN VELLYGIWSN
Sbjct: 1 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSN 60
Query: 371 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 550
CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF
Sbjct: 61 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 120
Query: 551 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFN 730
FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVF LFN
Sbjct: 121 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFNHGGHGHSHGSGHGHSHSLFN 180
Query: 731 GALEQAHGHGDHCHGHELK--XXXXXXXXXXXXXXXXXXXXXPSLKETTGPSRQILQGVF 904
GAL+ +HGH DHCH HE K PS K T GPSRQILQGVF
Sbjct: 181 GALDHSHGHEDHCHSHEAKHGAAHSHDHDHAHGHGHLHSHDGPSFKATAGPSRQILQGVF 240
Query: 905 LHILADTLGSIGVIASAIMMQNFGLMIADXXXXXXXXXXXXXXXXXXFRESVXILMQRTP 1084
LHILADTLGSIGVIASAIMMQNFGLMIAD RESV ILMQRTP
Sbjct: 241 LHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTP 300
Query: 1085 PLLXN 1099
P L N
Sbjct: 301 PSLEN 305
Score = 24.3 bits (51), Expect(2) = e-115
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1102 LXQCYQRVQXLQ 1137
L QCYQRVQ LQ
Sbjct: 307 LPQCYQRVQQLQ 318
>ref|NP_075023.2| zinc transporter 5 [Mus musculus].
Length = 761
Score = 170 bits (430), Expect = 2e-42
Identities = 98/273 (35%), Positives = 133/273 (48%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ +L + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 406 KQVLEESDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 465
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFLI AFF+F E V R + PP++ L VS+
Sbjct: 466 MSRWKATRIFSYGYGRIEILSGFINGLFLIVIAFFVFMESVARLIDPPELDTNMLTPVSV 525
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F G HGH H HGH
Sbjct: 526 GGLIVNLIGICAFSHAHSHGHGAS---------QGNCHSDHGHSHHAHGH---------- 566
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S T G ++GVFLH+LADTLGSIGVI S ++++ FG IA
Sbjct: 567 ---------GHDHGHSHGFTGGGMNANMRGVFLHVLADTLGSIGVIVSTVLIEQFGWFIA 617
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 618 DPLCSLFIAVLIFLSVIPLIKDACQVLLLRLPP 650
>ref|NP_001028458.1| zinc transporter 10 [Mus musculus].
Length = 470
Score = 72.0 bits (175), Expect = 8e-13
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDN-DAFSYGYVRAEVLAGFV 520
EL+ G N + L+SDSF+M D ++ GL + I++ + +YGYVRAEV+
Sbjct: 25 ELVSGYLGNSIALLSDSFNMLSDLISLCVGLGSGYIARRGPRGSSATYGYVRAEVVGALS 84
Query: 521 NGLFLIFTAFFIFSEGVERALAPPDVHH-ERLLLVSILGFVVNLVGIFVFK 670
N +FL F IF E V R P + E +L+V LG VN+VG+ +F+
Sbjct: 85 NAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGALGLAVNVVGLLIFQ 135
>ref|NP_033605.1| zinc transporter 1 [Mus musculus].
Length = 503
Score = 64.3 bits (155), Expect = 2e-10
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Frame = +2
Query: 374 LGLISDSFHMFFDSTAILAGLAASVISK-WRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 550
L ++SDSFHM D A++ L A ++ ++G++RAEV+ VN +FL F
Sbjct: 35 LAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGALVNAIFLTGLCF 94
Query: 551 FIFSEGVERALAPPDVHHERLLL-VSILGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLF 727
I E VER + P ++ ++L V + G +VN++G+ +F
Sbjct: 95 AILLEAVERFIEPHEMQQPLVVLSVGVAGLLVNVLGLCLFH------------------H 136
Query: 728 NGALEQAHGHGDHCHGH 778
+ Q GHG H HGH
Sbjct: 137 HSGEGQGAGHG-HSHGH 152
>ref|NP_659047.2| zinc transporter 6 [Mus musculus].
Length = 460
Score = 59.3 bits (142), Expect = 5e-09
Identities = 36/143 (25%), Positives = 68/143 (47%)
Frame = +2
Query: 221 YKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFH 400
++ P+ + FGK+ FR + +D+ S L++ +N + L + ++
Sbjct: 7 FRKPQRSFFGKLLQEFRLVAADRRSWKILLFGAINVLCTGFLLMWCSSTNSIALTAYTYL 66
Query: 401 MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERA 580
FD +++ L + + + + +S+G+ R EVLA F + + A FI E ER
Sbjct: 67 TIFDLFSLITCLISYWVMMRKPSPVYSFGFERLEVLAVFASTVLAQLGALFILKESAERF 126
Query: 581 LAPPDVHHERLLLVSILGFVVNL 649
L P++H RLL+ + + NL
Sbjct: 127 LEQPEIHTGRLLVGTFVALSFNL 149
>ref|NP_035904.2| zinc transporter 4 [Mus musculus].
Length = 430
Score = 59.3 bits (142), Expect = 5e-09
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVN 523
EL+ G +N L +++D+ HM D +AI+ L A +S F++G+ R EVL+ ++
Sbjct: 128 ELVGGYMANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTRRFTFGFHRLEVLSAMIS 187
Query: 524 GLFLIFTAFFIFSEGVERAL-APPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXX 700
+ + F+ E V+R + +++ + +L+ + +G VN++ F+
Sbjct: 188 VMLVYVLMGFLLYEAVQRTIHMNYEINGDVMLITAAVGVAVNVIMGFL------------ 235
Query: 701 XXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPS 880
L Q+ H H H H L S G
Sbjct: 236 ------------LNQSGHHHSHAHSHSLPSNSPSMV---------------SSGHNHGQD 268
Query: 881 RQILQGVFLHILADTLGSIGVIASAIMMQ 967
++ F+H L D + S+GV+ +A +++
Sbjct: 269 SLAVRAAFVHALGDLVQSVGVLIAAYIIR 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,880,352
Number of extensions: 644014
Number of successful extensions: 1765
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 8
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002900
(1137 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129683.1| zinc transporter 7 [Sus scrofa]. 438 e-124
Alignment gi|NP_001131096.1| zinc transporter 5 [Sus scrofa]. 166 2e-41
Alignment gi|XP_003359855.1| PREDICTED: zinc transporter 5-like [Sus scro... 166 2e-41
Alignment gi|XP_003357675.1| PREDICTED: zinc transporter 10 [Sus scrofa]. 70 2e-12
Alignment gi|NP_001132942.1| zinc transporter 1 [Sus scrofa]. 68 1e-11
Alignment gi|NP_001131095.1| zinc transporter 6 [Sus scrofa]. 61 1e-09
Alignment gi|NP_001124444.1| zinc transporter 4 [Sus scrofa]. 57 2e-08
>ref|NP_001129683.1| zinc transporter 7 [Sus scrofa].
Length = 376
Score = 438 bits (1127), Expect(2) = e-124
Identities = 232/304 (76%), Positives = 232/304 (76%)
Frame = +2
Query: 191 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSN 370
MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRN VELLYGIWSN
Sbjct: 1 MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSN 60
Query: 371 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 550
CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF
Sbjct: 61 CLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAF 120
Query: 551 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFN 730
FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFK LFN
Sbjct: 121 FIFSEGVERALAPPDVHHERLLLVSILGFVVNLVGIFVFKHGGHGHSHGSGHGHSHSLFN 180
Query: 731 GALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLH 910
GALEQAHGHGDHCHGHELK PSLKETTGPSRQILQGVFLH
Sbjct: 181 GALEQAHGHGDHCHGHELKHGAGHGHDHTHGHGHFHAHDGPSLKETTGPSRQILQGVFLH 240
Query: 911 ILADTLGSIGVIASAIMMQNFGLMIADXXXXXXXXXXXXXXXXXXFRESVXILMQRTPPL 1090
ILADTLGSIGVIASAIMMQNFGLMIAD RESV ILMQRTPPL
Sbjct: 241 ILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPL 300
Query: 1091 LXNI 1102
L NI
Sbjct: 301 LENI 304
Score = 24.3 bits (51), Expect(2) = e-124
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1102 LXQCYQRVQXLQ 1137
L QCYQRVQ LQ
Sbjct: 305 LPQCYQRVQQLQ 316
>ref|NP_001131096.1| zinc transporter 5 [Sus scrofa].
Length = 767
Score = 166 bits (420), Expect = 2e-41
Identities = 97/273 (35%), Positives = 133/273 (48%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 410 KQILEENDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 469
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFL+ AFF+F E V R + PP++ L VS+
Sbjct: 470 MSRWKATRIFSYGYGRIEILSGFINGLFLVVIAFFVFMESVARLIDPPELDTHMLTPVSV 529
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + HGH DH HGH
Sbjct: 530 GGLIVNLIGICAFSHAHTHTHGASQGSCHSSDHSHS-HHMHGHSDHGHGH---------- 578
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S ++GVFLH+LADTLGSIGVI S I+++ FG IA
Sbjct: 579 ---------------SHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTILIEQFGWFIA 623
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 624 DPLCSLFIAVLIFLSVVPLIKDACQVLLLRLPP 656
>ref|XP_003359855.1| PREDICTED: zinc transporter 5-like [Sus scrofa].
Length = 633
Score = 166 bits (420), Expect = 2e-41
Identities = 97/273 (35%), Positives = 133/273 (48%)
Frame = +2
Query: 269 RSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASV 448
+ IL + SR VEL YG+ +N LGLISD FHM FD +A++ GL A++
Sbjct: 276 KQILEENDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAAL 335
Query: 449 ISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSI 628
+S+W+ FSYGY R E+L+GF+NGLFL+ AFF+F E V R + PP++ L VS+
Sbjct: 336 MSRWKATRIFSYGYGRIEILSGFINGLFLVVIAFFVFMESVARLIDPPELDTHMLTPVSV 395
Query: 629 LGFVVNLVGIFVFKXXXXXXXXXXXXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXX 808
G +VNL+GI F + + HGH DH HGH
Sbjct: 396 GGLIVNLIGICAFSHAHTHTHGASQGSCHSSDHSHS-HHMHGHSDHGHGH---------- 444
Query: 809 XXXXXXXXXXXXXXPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIA 988
S ++GVFLH+LADTLGSIGVI S I+++ FG IA
Sbjct: 445 ---------------SHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTILIEQFGWFIA 489
Query: 989 DXXXXXXXXXXXXXXXXXXFRESVXILMQRTPP 1087
D +++ +L+ R PP
Sbjct: 490 DPLCSLFIAVLIFLSVVPLIKDACQVLLLRLPP 522
>ref|XP_003357675.1| PREDICTED: zinc transporter 10 [Sus scrofa].
Length = 490
Score = 70.5 bits (171), Expect = 2e-12
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKW-RDNDAFSYGYVRAEVLAGFV 520
EL+ G N + L+SDSF+M D ++ GL+A I++ R +YGY RAEV+
Sbjct: 25 ELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYIARRPRGGLGATYGYGRAEVVGALS 84
Query: 521 NGLFLIFTAFFIFSEGVERALAPPDVHH-ERLLLVSILGFVVNLVGIFVFK 670
N +FL F IF E V R P + E +L+V LG VN++G+ +F+
Sbjct: 85 NAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGALGLAVNVLGLLIFQ 135
>ref|NP_001132942.1| zinc transporter 1 [Sus scrofa].
Length = 506
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +2
Query: 341 VELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISK-WRDNDAFSYGYVRAEVLAGF 517
+E++ ++ L ++SDSFHM D A++ L A ++ ++G++RAEV+
Sbjct: 24 LEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGAL 83
Query: 518 VNGLFLIFTAFFIFSEGVERALAPPDVHHERLLL-VSILGFVVNLVGIFVFKXXXXXXXX 694
VN +FL F I E +ER + P ++ ++L V + G VVN++G+ +F
Sbjct: 84 VNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVGVAGLVVNVLGLCLFHHHSG---- 139
Query: 695 XXXXXXXXXLFNGALEQAHGHGDHCHG 775
F H HG H HG
Sbjct: 140 ----------FGNDSGHGHSHGGHGHG 156
>ref|NP_001131095.1| zinc transporter 6 [Sus scrofa].
Length = 461
Score = 60.8 bits (146), Expect = 1e-09
Identities = 37/143 (25%), Positives = 69/143 (48%)
Frame = +2
Query: 221 YKPPKFNLFGKISGWFRSILSDKTSRNXXXXXXXXXXXXXVELLYGIWSNCLGLISDSFH 400
++ P+ + FGK+ FR + +D+ S L++ +N + L + ++
Sbjct: 7 FRKPQRSFFGKLLQEFRLVAADRRSWKILFFGAINLTCTGFLLMWCSSTNSIALTAYTYL 66
Query: 401 MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERA 580
FD +++ L + + + + A+S+G+ R EVLA F + + A FI E ER
Sbjct: 67 TIFDLFSLMTCLISYWVMMRKPSPAYSFGFERLEVLAVFASTVLAQLGALFILKESAERF 126
Query: 581 LAPPDVHHERLLLVSILGFVVNL 649
L P++H RLL+ + + NL
Sbjct: 127 LEQPEIHTGRLLVGTFVALSFNL 149
>ref|NP_001124444.1| zinc transporter 4 [Sus scrofa].
Length = 429
Score = 56.6 bits (135), Expect = 2e-08
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 9/217 (4%)
Frame = +2
Query: 344 ELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVN 523
EL+ G +N L +++D+ HM D +AI+ L A +S F++G+ R EVL+ ++
Sbjct: 128 ELVGGYIANSLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMIS 187
Query: 524 GLFLIFTAFFIFSEGVERAL-APPDVHHERLLLVSILGFVVNLVGIFVFKXXXXXXXXXX 700
L + F+ E V+R + +++ + +L+ + +G VN++
Sbjct: 188 VLLVYILMGFLLYEAVQRTIHMKYEINGDIMLITAAVGVAVNVI---------------- 231
Query: 701 XXXXXXXLFNGALEQAHGHGDHCHGHELKXXXXXXXXXXXXXXXXXXXXXPSLKETT--- 871
G L GH H H H L PS TT
Sbjct: 232 ---------MGFLLNQSGH-HHAHSHSL----------------------PSNSPTTGSR 259
Query: 872 -----GPSRQILQGVFLHILADTLGSIGVIASAIMMQ 967
G ++ F+H L D + S+GV+ +A +++
Sbjct: 260 CGHSHGQDSLAVRAAFVHALGDLVQSVGVLIAAYIIR 296
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,074,677
Number of extensions: 481010
Number of successful extensions: 1438
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 10
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002900
(1137 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 410 e-112
>Sscrofa_Chr04
|| Length = 143465943
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 66 gaagcggcgcgcggcccgggacaagctccggggcttcccatctgaggcgtcaccactgtc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128939871 gaagcggcgcgcggcccgggacaagctccggggcttcccatctgaggcgtcaccactgtc 128939812
Query: 126 actaccatcacccacggagccgctactagtggggtgtagacccggcccttcgccgggcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128939811 actaccatcacccacggagccgctactagtggggtgtagacccggcccttcgccgggcag 128939752
Query: 186 agaagatgttgcccctgtccatcaaggacgatgaatacaaaccacccaagttcaatctgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128939751 agaagatgttgcccctgtccatcaaggacgatgaatacaaaccacccaagttcaatctgt 128939692
Query: 246 tcggcaagatctcgggctggtttaggt 272
|||||||||||||||||||||||||||
Sbjct: 128939691 tcggcaagatctcgggctggtttaggt 128939665
Score = 287 bits (145), Expect = 7e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 701 ggccatggacatagtcattccctctttaacggtgctctcgagcaggcgcatggccacgga 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128910639 ggccatggacatagtcattccctctttaacggtgctctcgagcaggcgcatggccacgga 128910580
Query: 761 gatcattgccacggtcatgaactgaaacatggtgctggacatggccatgaccacactcat 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128910579 gatcattgccacggtcatgaactgaaacatggtgctggacatggccatgaccacactcat 128910520
Query: 821 ggacacggacactttcatgctcatg 845
|||||||||||||||||||||||||
Sbjct: 128910519 ggacacggacactttcatgctcatg 128910495
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 895 aggtgtatttttacacattctagcagatacacttgggagtattggtgtaattgcctctgc 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128903493 aggtgtatttttacacattctagcagatacacttgggagtattggtgtaattgcctctgc 128903434
Query: 955 catcatgatgcaaaattttggtctgatgatagcggatcctatttgttcaattctgatagc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128903433 catcatgatgcaaaattttggtctgatgatagcggatcctatttgttcaattctgatagc 128903374
Query: 1015 catcctcatagttgtaag 1032
||||||||||||||||||
Sbjct: 128903373 catcctcatagttgtaag 128903356
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 573 agagagccttagcccctccagatgtgcatcatgagagactgcttcttgtttcaattcttg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128919401 agagagccttagcccctccagatgtgcatcatgagagactgcttcttgtttcaattcttg 128919342
Query: 633 ggtttgtggtaaacctagtaggaatatttgttttcaagcatggaggtcatggacattctc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128919341 ggtttgtggtaaacctagtaggaatatttgttttcaagcatggaggtcatggacattctc 128919282
Query: 693 atggctctgg 702
||||||||||
Sbjct: 128919281 atggctctgg 128919272
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 372 gcttaggcttgatttccgactcttttcacatgtttttcgatagcactgccattttggctg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128924417 gcttaggcttgatttccgactcttttcacatgtttttcgatagcactgccattttggctg 128924358
Query: 432 gattggcagcatctgttatttcaaaatggagagataatgatgctttctcttatgggta 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128924357 gattggcagcatctgttatttcaaaatggagagataatgatgctttctcttatgggta 128924300
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 268 taggtccatcctgtcggacaagacgtctcggaacctgtttttcttcctgtgcctgaacct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128939285 taggtccatcctgtcggacaagacgtctcggaacctgtttttcttcctgtgcctgaacct 128939226
Query: 328 ctctttcgcttttgtcgaactactctacggcatctggagcaactg 372
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128939225 ctctttcgcttttgtcgaactactctacggcatctggagcaactg 128939181
Score = 135 bits (68), Expect = 6e-29
Identities = 82/89 (92%)
Strand = Plus / Minus
Query: 486 ggtatgttagagcggaagttctggctggctttgtcaatggcctgtttttgatcttcactg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128920144 ggtatgttagagcggaagttctggctggctttgtcaatggcctgtttttgatcttcactg 128920085
Query: 546 cnnnnnnnattttctcagaaggagtcgag 574
| |||||||||||||||||||||
Sbjct: 128920084 ctttttttattttctcagaaggagtcgag 128920056
Score = 131 bits (66), Expect = 9e-28
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 1031 agtgttattcctctttttagagagtctgtggnaatattaatgcagagaactcctcccctt 1090
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 128878263 agtgttattcctcttttaagagagtctgttggaatattaatgcagagaactcctcccctt 128878204
Query: 1091 ttggnaaata-tctgnctcagtgctatcaaagggt 1124
|||| ||||| |||| ||||||||||||| |||||
Sbjct: 128878203 ttggaaaatattctgcctcagtgctatcagagggt 128878169
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 845 gatggcccttccttaaaagaaacaacaggacccagtagacagattttacaaggt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128906826 gatggcccttccttaaaagaaacaacaggacccagtagacagattttacaaggt 128906773
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,870,018
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 9
Length of query: 1137
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1116
Effective length of database: 2,808,413,156
Effective search space: 3134189082096
Effective search space used: 3134189082096
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)