Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002902
(978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098448.1| linker for activation of T-cells family memb... 214 9e-58
>ref|NP_001098448.1| linker for activation of T-cells family member 1 [Bos taurus].
Length = 254
Score = 214 bits (546), Expect(2) = 9e-58
Identities = 129/223 (57%), Positives = 132/223 (59%), Gaps = 30/223 (13%)
Frame = +3
Query: 363 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 542
MEAVS Y CVRCRELPGSYDTA DSLTPSSI+IK PPTL P
Sbjct: 1 MEAVSPAVYVLGPLLLPLLAVLLMALCVRCRELPGSYDTAVSDSLTPSSIMIKLPPTLVP 60
Query: 543 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE---- 710
P T YP SQPDLLPIPRSPQP GGSH M SSRQDS ANSVASYENE
Sbjct: 61 RPSTTPYPLP------SQPDLLPIPRSPQPLGGSHCMASSRQDSASANSVASYENEGVTG 114
Query: 711 ------------------------EPVCXXXXXXXXXXXYHNEGYLVVLPDSVPAT--GA 812
E C Y+NEGYLVVLPD PAT G
Sbjct: 115 TPVAPAGRRLRPILGSADPVWSPPEAACEDADEDDYEEDYNNEGYLVVLPDRDPATSTGN 174
Query: 813 TVLAAPASNKPGLRDSAFFMESGEDYVNVPESEESADASLNGS 941
V APAS+KPGLRDSAF MESGEDYVNVPESEESADASLNGS
Sbjct: 175 AVSPAPASSKPGLRDSAFSMESGEDYVNVPESEESADASLNGS 217
Score = 28.1 bits (61), Expect(2) = 9e-58
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQELQP
Sbjct: 218 REYVNVSQELQP 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,330,801
Number of extensions: 1111553
Number of successful extensions: 10642
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9791
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002902
(978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849910.1| PREDICTED: similar to linker for activation of ... 272 1e-73
>ref|XP_849910.1| PREDICTED: similar to linker for activation of T cells isoform b
[Canis familiaris].
Length = 309
Score = 272 bits (696), Expect(2) = 1e-73
Identities = 140/196 (71%), Positives = 148/196 (75%)
Frame = +3
Query: 354 LLQMEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPT 533
LLQMEAV LIPY CVRCRELPGSYD+ A DSLTPSSIVIKRPPT
Sbjct: 35 LLQMEAVVLIPYMLGLLLLPLLAVVL---CVRCRELPGSYDSTASDSLTPSSIVIKRPPT 91
Query: 534 LAPWPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEE 713
+ PWP A SY P+TSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEE
Sbjct: 92 VVPWPSAPSYGPVTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEE 151
Query: 714 PVCXXXXXXXXXXXYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFFMESGEDYV 893
+ YHNEGYL VLPDS PATG V AP + P LRDSAF MESGEDYV
Sbjct: 152 HLSCEDNDEDEEEEYHNEGYLEVLPDSTPATGTAVPPAPVPSNPSLRDSAFSMESGEDYV 211
Query: 894 NVPESEESADASLNGS 941
NVPES+ESA+ASL+GS
Sbjct: 212 NVPESKESANASLDGS 227
Score = 23.5 bits (49), Expect(2) = 1e-73
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 941 REYVNVSQEL 970
REYVNVSQEL
Sbjct: 228 REYVNVSQEL 237
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,703,287
Number of extensions: 1121547
Number of successful extensions: 11381
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10340
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002902
(978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014989.2| linker for activation of T-cells family memb... 234 6e-63
Alignment gi|NP_001014987.1| linker for activation of T-cells family memb... 233 8e-63
Alignment gi|NP_001014988.1| linker for activation of T-cells family memb... 227 7e-61
Alignment gi|NP_055202.1| linker for activation of T-cells family member ... 218 3e-58
>ref|NP_001014989.2| linker for activation of T-cells family member 1 isoform d [Homo
sapiens].
Length = 269
Score = 234 bits (596), Expect(2) = 6e-63
Identities = 123/195 (63%), Positives = 135/195 (69%)
Frame = +3
Query: 357 LQMEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTL 536
LQME L+P CV C LPGSYD+ + DSL P I KRP T+
Sbjct: 35 LQMEEAILVP-CVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTV 93
Query: 537 APWPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEP 716
APWPPA YPP+TSYPPLSQPDLLPIPRSPQP GGSHR PSSR+DSDGANSVASYENEEP
Sbjct: 94 APWPPA--YPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEP 151
Query: 717 VCXXXXXXXXXXXYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFFMESGEDYVN 896
C YHN GYLVVLPDS PAT +APA + PG+RDSAF MES +DYVN
Sbjct: 152 AC--EDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVN 209
Query: 897 VPESEESADASLNGS 941
VPES ESA+ASL+GS
Sbjct: 210 VPESGESAEASLDGS 224
Score = 26.2 bits (56), Expect(2) = 6e-63
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQEL P
Sbjct: 225 REYVNVSQELHP 236
>ref|NP_001014987.1| linker for activation of T-cells family member 1 isoform b [Homo
sapiens].
Length = 233
Score = 233 bits (595), Expect(2) = 8e-63
Identities = 117/167 (70%), Positives = 128/167 (76%)
Frame = +3
Query: 441 CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAPWPPATSYPPMTSYPPLSQPDLLPIPR 620
CV C LPGSYD+ + DSL P I KRP T+APWPPA YPP+TSYPPLSQPDLLPIPR
Sbjct: 26 CVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPA--YPPVTSYPPLSQPDLLPIPR 83
Query: 621 SPQPPGGSHRMPSSRQDSDGANSVASYENEEPVCXXXXXXXXXXXYHNEGYLVVLPDSVP 800
SPQP GGSHR PSSR+DSDGANSVASYENEEP C YHN GYLVVLPDS P
Sbjct: 84 SPQPLGGSHRTPSSRRDSDGANSVASYENEEPAC--EDADEDEDDYHNPGYLVVLPDSTP 141
Query: 801 ATGATVLAAPASNKPGLRDSAFFMESGEDYVNVPESEESADASLNGS 941
AT +APA + PG+RDSAF MES +DYVNVPES ESA+ASL+GS
Sbjct: 142 ATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGS 188
Score = 26.2 bits (56), Expect(2) = 8e-63
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQEL P
Sbjct: 189 REYVNVSQELHP 200
>ref|NP_001014988.1| linker for activation of T-cells family member 1 isoform c [Homo
sapiens].
Length = 232
Score = 227 bits (578), Expect(2) = 7e-61
Identities = 116/167 (69%), Positives = 127/167 (76%)
Frame = +3
Query: 441 CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAPWPPATSYPPMTSYPPLSQPDLLPIPR 620
CV C LPGSYD+ + DSL P I KRP T+APWPPA YPP+TSYPPLSQPDLLPIP
Sbjct: 26 CVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPA--YPPVTSYPPLSQPDLLPIP- 82
Query: 621 SPQPPGGSHRMPSSRQDSDGANSVASYENEEPVCXXXXXXXXXXXYHNEGYLVVLPDSVP 800
SPQP GGSHR PSSR+DSDGANSVASYENEEP C YHN GYLVVLPDS P
Sbjct: 83 SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDD--YHNPGYLVVLPDSTP 140
Query: 801 ATGATVLAAPASNKPGLRDSAFFMESGEDYVNVPESEESADASLNGS 941
AT +APA + PG+RDSAF MES +DYVNVPES ESA+ASL+GS
Sbjct: 141 ATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGS 187
Score = 26.2 bits (56), Expect(2) = 7e-61
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQEL P
Sbjct: 188 REYVNVSQELHP 199
>ref|NP_055202.1| linker for activation of T-cells family member 1 isoform a [Homo
sapiens].
Length = 262
Score = 218 bits (555), Expect(2) = 3e-58
Identities = 117/196 (59%), Positives = 128/196 (65%), Gaps = 29/196 (14%)
Frame = +3
Query: 441 CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAPWPPATSYPPMTSYPPLSQPDLLPIPR 620
CV C LPGSYD+ + DSL P I KRP T+APWPPA YPP+TSYPPLSQPDLLPIPR
Sbjct: 26 CVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPA--YPPVTSYPPLSQPDLLPIPR 83
Query: 621 SPQPPGGSHRMPSSRQDSDGANSVASYENE-----------------------------E 713
SPQP GGSHR PSSR+DSDGANSVASYENE E
Sbjct: 84 SPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGAQAGWGVWGPSWTRLTPVSLPPE 143
Query: 714 PVCXXXXXXXXXXXYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFFMESGEDYV 893
P C YHN GYLVVLPDS PAT +APA + PG+RDSAF MES +DYV
Sbjct: 144 PACEDADEDEDD--YHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYV 201
Query: 894 NVPESEESADASLNGS 941
NVPES ESA+ASL+GS
Sbjct: 202 NVPESGESAEASLDGS 217
Score = 26.2 bits (56), Expect(2) = 3e-58
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQEL P
Sbjct: 218 REYVNVSQELHP 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,796,266
Number of extensions: 1078628
Number of successful extensions: 10631
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9827
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002902
(978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034819.1| linker for activation of T-cells family member ... 211 2e-55
>ref|NP_034819.1| linker for activation of T-cells family member 1 [Mus musculus].
Length = 242
Score = 211 bits (537), Expect(2) = 2e-55
Identities = 114/193 (59%), Positives = 129/193 (66%)
Frame = +3
Query: 363 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 542
MEA +L P CVRCRELP SYD+ + +SL P SI+IK P P
Sbjct: 1 MEADALSPVGLGLLLLPFLVTLLAALCVRCRELPVSYDSTSTESLYPRSILIKPPQITVP 60
Query: 543 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC 722
PA SYP +TS+PPL QPDLLPIPRSPQP GGSHRMPSS+Q+SD ANSVASYEN+EP C
Sbjct: 61 RTPAVSYPLVTSFPPLRQPDLLPIPRSPQPLGGSHRMPSSQQNSDDANSVASYENQEPAC 120
Query: 723 XXXXXXXXXXXYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFFMESGEDYVNVP 902
Y N GYLVVLPDS PA V +AP + P L DSAF +ES EDYVNVP
Sbjct: 121 KNVDADEDEDDYPN-GYLVVLPDSSPAAVPVVSSAPVPSNPDLGDSAFSVESCEDYVNVP 179
Query: 903 ESEESADASLNGS 941
ESEESA+ASL+GS
Sbjct: 180 ESEESAEASLDGS 192
Score = 23.5 bits (49), Expect(2) = 2e-55
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVS E QP
Sbjct: 193 REYVNVSPEQQP 204
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,726,353
Number of extensions: 873177
Number of successful extensions: 8141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7366
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002902
(978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124572.1| PREDICTED: linker for activation of T-cells ... 328 4e-92
Alignment gi|XP_003124570.1| PREDICTED: linker for activation of T-cells ... 326 3e-91
>ref|XP_003124572.1| PREDICTED: linker for activation of T-cells family member 1-like
[Sus scrofa].
Length = 233
Score = 328 bits (842), Expect(2) = 4e-92
Identities = 164/193 (84%), Positives = 164/193 (84%)
Frame = +3
Query: 363 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 542
MEAVSLIPY CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP
Sbjct: 1 MEAVSLIPYALGLLLLPLLAVLLMALCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 60
Query: 543 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC 722
WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC
Sbjct: 61 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC 120
Query: 723 XXXXXXXXXXXYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFFMESGEDYVNVP 902
YHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAF MESGEDYVNVP
Sbjct: 121 EDADEDEDEEDYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFSMESGEDYVNVP 180
Query: 903 ESEESADASLNGS 941
ESEESADASLNGS
Sbjct: 181 ESEESADASLNGS 193
Score = 28.1 bits (61), Expect(2) = 4e-92
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQELQP
Sbjct: 194 REYVNVSQELQP 205
>ref|XP_003124570.1| PREDICTED: linker for activation of T-cells family member 1-like
[Sus scrofa].
Length = 233
Score = 326 bits (835), Expect(2) = 3e-91
Identities = 163/193 (84%), Positives = 163/193 (84%)
Frame = +3
Query: 363 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 542
MEAVSLIPY CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP
Sbjct: 1 MEAVSLIPYALGLLLLPLLAVLLMALCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 60
Query: 543 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC 722
WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC
Sbjct: 61 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEEPVC 120
Query: 723 XXXXXXXXXXXYHNEGYLVVLPDSVPATGATVLAAPASNKPGLRDSAFFMESGEDYVNVP 902
YHNEGYLVVLPDSVPATGATV AAPASNKPGLRDSAF MESGEDYVNVP
Sbjct: 121 EDADEDEDEEDYHNEGYLVVLPDSVPATGATVPAAPASNKPGLRDSAFSMESGEDYVNVP 180
Query: 903 ESEESADASLNGS 941
ESEESADASLNGS
Sbjct: 181 ESEESADASLNGS 193
Score = 28.1 bits (61), Expect(2) = 3e-91
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 941 REYVNVSQELQP 976
REYVNVSQELQP
Sbjct: 194 REYVNVSQELQP 205
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,845,482
Number of extensions: 763223
Number of successful extensions: 7144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6598
Number of HSP's successfully gapped: 4
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002902
(978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 369 2e-99
>Sscrofa_Chr03
|| Length = 144787322
Score = 369 bits (186), Expect = 2e-99
Identities = 192/194 (98%)
Strand = Plus / Plus
Query: 53 ctgagagaggcgggcgcagagcccaggggcaggtacggctggggcgcagggtctgtatag 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825611 ctgagagaggcgggcgcagagcccaggggcaggtacggctggggcgcagggtctgtatag 18825670
Query: 113 gggcgcctggtgccccagactccagcccagcctggcctgacctccctggggtcaagggcc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825671 gggcgcctggtgccccagactccagcccagcctggcctgacctccctggggtcaagggcc 18825730
Query: 173 ttccagagctggcgctgccgcccactcagcccattgaggggagggggcgcggctgcccct 232
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825731 ttccagaaccggcgctgccgcccactcagcccattgaggggagggggcgcggctgcccct 18825790
Query: 233 ctaccaggctccca 246
||||||||||||||
Sbjct: 18825791 ctaccaggctccca 18825804
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 299 agcagctctgctcttgagggctgtgcagcgagcagctaggccaggtccaagccccctcct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825857 agcagctctgctcttgagggctgtgcagcgagcagctaggccaggtccaagccccctcct 18825916
Query: 359 gcagatggaggcggtcagcctgatcccctacgcgctgggcctcctgctgctgcccctctt 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 18825917 gcagatggaggcggtcagcctgatcccctacgcactgggcctcctgctgctgcccctctt 18825976
Query: 419 ggccgtgttgctgatggcactgtgtgtgcgttgccgagagctgccagg 466
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825977 ggccgtgttgctgatggcactgtgtgtgcgttgccgagagctgccagg 18826024
Score = 174 bits (88), Expect = 6e-41
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 776 ggtggtgcttcccgacagcgtcccagccactggcgccacggtcctagcagctcctgcgtc 835
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 18827279 ggtggtgcttcccgacagcgtcccagccactggcgccacggtcccagcagctcctgcgtc 18827338
Query: 836 caacaagcccggcctccgagacagcgcctttt 867
||||||||||||||||||||||||||||||||
Sbjct: 18827339 caacaagcccggcctccgagacagcgcctttt 18827370
Score = 168 bits (85), Expect = 4e-39
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 529 ccacacttgccccttggccaccagccacttcctacccgcctatgacctcctacccacccc 588
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18826652 ccacacttgccccctggccaccagccacttcctacccgcctatgacctcctacccacccc 18826711
Query: 589 tgagccagccagatctgctccccatcccg 617
|||||||||||||||||||||||||||||
Sbjct: 18826712 tgagccagccagatctgctccccatcccg 18826740
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 711 gagccagtctgtgaggatgcggacgaagacgaggatgaggaagactatcacaacgagggc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18827142 gagccagtctgtgaggatgcggacgaagacgaggatgaggaagactatcacaacgagggc 18827201
Query: 771 tacttg 776
||||||
Sbjct: 18827202 tacttg 18827207
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 617 gcgatccccgcagccccccggaggctcccaccgcatgccttcttcccggcaggactcaga 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18826873 gcgatccccgcagccccccggaggctcccaccgcatgccttcttcccggcaggactcaga 18826932
Query: 677 tggtg 681
|||||
Sbjct: 18826933 tggtg 18826937
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 871 tggagtccggggaagattacgtgaacgttcctgagagtgaggagagtgcagatgcgtctc 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18829051 tggagtccggggaagattacgtgaacgttcctgagagtgaggagagtgcagatgcgtctc 18829110
Query: 931 taa 933
|||
Sbjct: 18829111 taa 18829113
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 486 cccgatagtttgaccccaagtagcatcgtgatcaagcggcctc 528
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18826361 cccgctagtttgaccccaagtagcatcgtgatcaagcggcctc 18826403
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 941 cgggagtatgtgaatgtgtcccaggagctacagcccgt 978
|||||||||||||| |||||||||||||||||||||||
Sbjct: 18829339 cgggagtatgtgaacgtgtcccaggagctacagcccgt 18829376
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 462 ccaggctcatatgacactgctgcccccgatag 493
||||||||||||||||||||||||||||||||
Sbjct: 18826212 ccaggctcatatgacactgctgcccccgatag 18826243
Score = 61.9 bits (31), Expect = 6e-07
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 681 gccaacagtgtggccagctacgagaacgagg 711
|||||||||||||||||||||||||||||||
Sbjct: 18827028 gccaacagtgtggccagctacgagaacgagg 18827058
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,146,894
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 11
Length of query: 978
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 957
Effective length of database: 2,808,413,156
Effective search space: 2687651390292
Effective search space used: 2687651390292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)