Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002903
(1041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098448.1| linker for activation of T-cells family memb... 204 3e-60
>ref|NP_001098448.1| linker for activation of T-cells family member 1 [Bos taurus].
Length = 254
Score = 204 bits (518), Expect(2) = 3e-60
Identities = 119/205 (58%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Frame = +1
Query: 358 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 537
MEAVS Y CVRCRELPGSYDTA DSLTPSSI+IK PPTL P
Sbjct: 1 MEAVSPAVYVLGPLLLPLLAVLLMALCVRCRELPGSYDTAVSDSLTPSSIMIKLPPTLVP 60
Query: 538 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEGASA 717
P T YP SQPDLLPIPRSPQP GGSH M SSRQDS ANSVASYENEG +
Sbjct: 61 RPSTTPYPLP------SQPDLLPIPRSPQPLGGSHCMASSRQDSASANSVASYENEGVTG 114
Query: 718 ILAALAGRRPGPALGSADPVSFPPEPVCXXXXXXXXXXXYHNEGYLVVLP--DXXXXXXX 891
A AGRR P LGSADPV PPE C Y+NEGYLVVLP D
Sbjct: 115 TPVAPAGRRLRPILGSADPVWSPPEAACEDADEDDYEEDYNNEGYLVVLPDRDPATSTGN 174
Query: 892 XXXXXXXXXKPGLRDSAFSMESGED 966
KPGLRDSAFSMESGED
Sbjct: 175 AVSPAPASSKPGLRDSAFSMESGED 199
Score = 47.4 bits (111), Expect(2) = 3e-60
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPESEESA+ASLNGS EYVNVS
Sbjct: 200 YVNVPESEESADASLNGSREYVNVS 224
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,578,314
Number of extensions: 1362258
Number of successful extensions: 14245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13213
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002903
(1041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849910.1| PREDICTED: similar to linker for activation of ... 210 1e-61
>ref|XP_849910.1| PREDICTED: similar to linker for activation of T cells isoform b
[Canis familiaris].
Length = 309
Score = 210 bits (535), Expect(2) = 1e-61
Identities = 118/206 (57%), Positives = 122/206 (59%)
Frame = +1
Query: 349 LLQMEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPT 528
LLQMEAV LIPY CVRCRELPGSYD+ A DSLTPSSIVIKRPPT
Sbjct: 35 LLQMEAVVLIPYMLGLLLLPLLAVVL---CVRCRELPGSYDSTASDSLTPSSIVIKRPPT 91
Query: 529 LAPWPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEG 708
+ PWP A SY P+TSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE
Sbjct: 92 VVPWPSAPSYGPVTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE- 150
Query: 709 ASAILAALAGRRPGPALGSADPVSFPPEPVCXXXXXXXXXXXYHNEGYLVVLPDXXXXXX 888
E + YHNEGYL VLPD
Sbjct: 151 ---------------------------EHLSCEDNDEDEEEEYHNEGYLEVLPDSTPATG 183
Query: 889 XXXXXXXXXXKPGLRDSAFSMESGED 966
P LRDSAFSMESGED
Sbjct: 184 TAVPPAPVPSNPSLRDSAFSMESGED 209
Score = 45.8 bits (107), Expect(2) = 1e-61
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPES+ESANASL+GS EYVNVS
Sbjct: 210 YVNVPESKESANASLDGSREYVNVS 234
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,197,102
Number of extensions: 1382211
Number of successful extensions: 15137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14120
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002903
(1041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055202.1| linker for activation of T-cells family member ... 206 1e-59
Alignment gi|NP_001014989.2| linker for activation of T-cells family memb... 174 5e-50
Alignment gi|NP_001014987.1| linker for activation of T-cells family memb... 174 7e-50
Alignment gi|NP_001014988.1| linker for activation of T-cells family memb... 167 6e-48
>ref|NP_055202.1| linker for activation of T-cells family member 1 isoform a [Homo
sapiens].
Length = 262
Score = 206 bits (525), Expect(2) = 1e-59
Identities = 110/178 (61%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Frame = +1
Query: 436 CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAPWPPATSYPPMTSYPPLSQPDLLPIPR 615
CV C LPGSYD+ + DSL P I KRP T+APWPPA YPP+TSYPPLSQPDLLPIPR
Sbjct: 26 CVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPA--YPPVTSYPPLSQPDLLPIPR 83
Query: 616 SPQPPGGSHRMPSSRQDSDGANSVASYENEGASAILAALAGRRP-GPALGSADPVSFPPE 792
SPQP GGSHR PSSR+DSDGANSVASYENEGAS I A AG GP+ PVS PPE
Sbjct: 84 SPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGAQAGWGVWGPSWTRLTPVSLPPE 143
Query: 793 PVCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXXXXXXXXXXXKPGLRDSAFSMESGED 966
P C YHN GYLVVLPD PG+RDSAFSMES +D
Sbjct: 144 PAC--EDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDD 199
Score = 42.4 bits (98), Expect(2) = 1e-59
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPES ESA ASL+GS EYVNVS
Sbjct: 200 YVNVPESGESAEASLDGSREYVNVS 224
>ref|NP_001014989.2| linker for activation of T-cells family member 1 isoform d [Homo
sapiens].
Length = 269
Score = 174 bits (442), Expect(2) = 5e-50
Identities = 102/205 (49%), Positives = 110/205 (53%)
Frame = +1
Query: 352 LQMEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTL 531
LQME L+P CV C LPGSYD+ + DSL P I KRP T+
Sbjct: 35 LQMEEAILVP-CVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTV 93
Query: 532 APWPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEGA 711
APWPPA YPP+TSYPPLSQPDLLPIPRSPQP GGSHR PSSR+DSDGANSVASYENE
Sbjct: 94 APWPPA--YPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE-- 149
Query: 712 SAILAALAGRRPGPALGSADPVSFPPEPVCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXX 891
EP C YHN GYLVVLPD
Sbjct: 150 --------------------------EPACEDADEDEDD--YHNPGYLVVLPDSTPATST 181
Query: 892 XXXXXXXXXKPGLRDSAFSMESGED 966
PG+RDSAFSMES +D
Sbjct: 182 AAPSAPALSTPGIRDSAFSMESIDD 206
Score = 42.4 bits (98), Expect(2) = 5e-50
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPES ESA ASL+GS EYVNVS
Sbjct: 207 YVNVPESGESAEASLDGSREYVNVS 231
>ref|NP_001014987.1| linker for activation of T-cells family member 1 isoform b [Homo
sapiens].
Length = 233
Score = 174 bits (441), Expect(2) = 7e-50
Identities = 96/177 (54%), Positives = 103/177 (58%)
Frame = +1
Query: 436 CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAPWPPATSYPPMTSYPPLSQPDLLPIPR 615
CV C LPGSYD+ + DSL P I KRP T+APWPPA YPP+TSYPPLSQPDLLPIPR
Sbjct: 26 CVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPA--YPPVTSYPPLSQPDLLPIPR 83
Query: 616 SPQPPGGSHRMPSSRQDSDGANSVASYENEGASAILAALAGRRPGPALGSADPVSFPPEP 795
SPQP GGSHR PSSR+DSDGANSVASYENE EP
Sbjct: 84 SPQPLGGSHRTPSSRRDSDGANSVASYENE----------------------------EP 115
Query: 796 VCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXXXXXXXXXXXKPGLRDSAFSMESGED 966
C YHN GYLVVLPD PG+RDSAFSMES +D
Sbjct: 116 ACEDADEDEDD--YHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDD 170
Score = 42.4 bits (98), Expect(2) = 7e-50
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPES ESA ASL+GS EYVNVS
Sbjct: 171 YVNVPESGESAEASLDGSREYVNVS 195
>ref|NP_001014988.1| linker for activation of T-cells family member 1 isoform c [Homo
sapiens].
Length = 232
Score = 167 bits (424), Expect(2) = 6e-48
Identities = 95/177 (53%), Positives = 102/177 (57%)
Frame = +1
Query: 436 CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAPWPPATSYPPMTSYPPLSQPDLLPIPR 615
CV C LPGSYD+ + DSL P I KRP T+APWPPA YPP+TSYPPLSQPDLLPIP
Sbjct: 26 CVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPA--YPPVTSYPPLSQPDLLPIP- 82
Query: 616 SPQPPGGSHRMPSSRQDSDGANSVASYENEGASAILAALAGRRPGPALGSADPVSFPPEP 795
SPQP GGSHR PSSR+DSDGANSVASYENE EP
Sbjct: 83 SPQPLGGSHRTPSSRRDSDGANSVASYENE----------------------------EP 114
Query: 796 VCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXXXXXXXXXXXKPGLRDSAFSMESGED 966
C YHN GYLVVLPD PG+RDSAFSMES +D
Sbjct: 115 ACEDADEDEDD--YHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDD 169
Score = 42.4 bits (98), Expect(2) = 6e-48
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPES ESA ASL+GS EYVNVS
Sbjct: 170 YVNVPESGESAEASLDGSREYVNVS 194
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,055,517
Number of extensions: 1323968
Number of successful extensions: 13814
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 12813
Number of HSP's successfully gapped: 8
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002903
(1041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034819.1| linker for activation of T-cells family member ... 152 3e-37
>ref|NP_034819.1| linker for activation of T-cells family member 1 [Mus musculus].
Length = 242
Score = 152 bits (385), Expect = 3e-37
Identities = 93/203 (45%), Positives = 104/203 (51%)
Frame = +1
Query: 358 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 537
MEA +L P CVRCRELP SYD+ + +SL P SI+IK P P
Sbjct: 1 MEADALSPVGLGLLLLPFLVTLLAALCVRCRELPVSYDSTSTESLYPRSILIKPPQITVP 60
Query: 538 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEGASA 717
PA SYP +TS+PPL QPDLLPIPRSPQP GGSHRMPSS+Q+SD ANSVASYEN+
Sbjct: 61 RTPAVSYPLVTSFPPLRQPDLLPIPRSPQPLGGSHRMPSSQQNSDDANSVASYENQ---- 116
Query: 718 ILAALAGRRPGPALGSADPVSFPPEPVCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXXXX 897
EP C Y N GYLVVLPD
Sbjct: 117 ------------------------EPACKNVDADEDEDDYPN-GYLVVLPDSSPAAVPVV 151
Query: 898 XXXXXXXKPGLRDSAFSMESGED 966
P L DSAFS+ES ED
Sbjct: 152 SSAPVPSNPDLGDSAFSVESCED 174
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,047,664
Number of extensions: 1069020
Number of successful extensions: 10639
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9697
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002903
(1041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124572.1| PREDICTED: linker for activation of T-cells ... 246 4e-73
Alignment gi|XP_003124570.1| PREDICTED: linker for activation of T-cells ... 246 4e-73
>ref|XP_003124572.1| PREDICTED: linker for activation of T-cells family member 1-like
[Sus scrofa].
Length = 233
Score = 246 bits (628), Expect(2) = 4e-73
Identities = 131/203 (64%), Positives = 131/203 (64%)
Frame = +1
Query: 358 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 537
MEAVSLIPY CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP
Sbjct: 1 MEAVSLIPYALGLLLLPLLAVLLMALCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 60
Query: 538 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEGASA 717
WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE
Sbjct: 61 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE---- 116
Query: 718 ILAALAGRRPGPALGSADPVSFPPEPVCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXXXX 897
EPVC YHNEGYLVVLPD
Sbjct: 117 ------------------------EPVCEDADEDEDEEDYHNEGYLVVLPDSVPATGATV 152
Query: 898 XXXXXXXKPGLRDSAFSMESGED 966
KPGLRDSAFSMESGED
Sbjct: 153 LAAPASNKPGLRDSAFSMESGED 175
Score = 47.4 bits (111), Expect(2) = 4e-73
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPESEESA+ASLNGS EYVNVS
Sbjct: 176 YVNVPESEESADASLNGSREYVNVS 200
>ref|XP_003124570.1| PREDICTED: linker for activation of T-cells family member 1-like
[Sus scrofa].
Length = 233
Score = 246 bits (628), Expect(2) = 4e-73
Identities = 131/203 (64%), Positives = 131/203 (64%)
Frame = +1
Query: 358 MEAVSLIPYXXXXXXXXXXXXXXXXXCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 537
MEAVSLIPY CVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP
Sbjct: 1 MEAVSLIPYALGLLLLPLLAVLLMALCVRCRELPGSYDTAAPDSLTPSSIVIKRPPTLAP 60
Query: 538 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENEGASA 717
WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE
Sbjct: 61 WPPATSYPPMTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDSDGANSVASYENE---- 116
Query: 718 ILAALAGRRPGPALGSADPVSFPPEPVCXXXXXXXXXXXYHNEGYLVVLPDXXXXXXXXX 897
EPVC YHNEGYLVVLPD
Sbjct: 117 ------------------------EPVCEDADEDEDEEDYHNEGYLVVLPDSVPATGATV 152
Query: 898 XXXXXXXKPGLRDSAFSMESGED 966
KPGLRDSAFSMESGED
Sbjct: 153 PAAPASNKPGLRDSAFSMESGED 175
Score = 47.4 bits (111), Expect(2) = 4e-73
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 966 YVNVPESEESANASLNGSWEYVNVS 1040
YVNVPESEESA+ASLNGS EYVNVS
Sbjct: 176 YVNVPESEESADASLNGSREYVNVS 200
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,287,935
Number of extensions: 931227
Number of successful extensions: 9613
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8758
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002903
(1041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 377 e-102
>Sscrofa_Chr03
|| Length = 144787322
Score = 377 bits (190), Expect = e-102
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 48 ctgagagaggcgggcgcagagcccaggggcaggtacggctggggcgcagggtctgtatag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825611 ctgagagaggcgggcgcagagcccaggggcaggtacggctggggcgcagggtctgtatag 18825670
Query: 108 gggcgcctggtgccccagactccagcccagcctggcctgacctccctggggtcaagggcc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825671 gggcgcctggtgccccagactccagcccagcctggcctgacctccctggggtcaagggcc 18825730
Query: 168 ttccagagccggcgctgccgcccactcagcccattgaggggagggggcgcggctgcccct 227
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825731 ttccagaaccggcgctgccgcccactcagcccattgaggggagggggcgcggctgcccct 18825790
Query: 228 ctaccaggctccca 241
||||||||||||||
Sbjct: 18825791 ctaccaggctccca 18825804
Score = 357 bits (180), Expect = 8e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 676 gccaacagtgtggccagctacgagaacgagggtgcgtctgcgatcctggcggccctggct 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18827028 gccaacagtgtggccagctacgagaacgagggtgcgtctgcgatcctggcggccctggct 18827087
Query: 736 gggaggaggccagggcccgccctgggctctgctgaccctgtgtcgttccccccagagcca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18827088 gggaggaggccagggcccgccctgggctctgctgaccctgtgtcgttccccccagagcca 18827147
Query: 796 gtctgtgaggatgcggacgaagacgaggatgaggaagactatcacaacgagggctacttg 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18827148 gtctgtgaggatgcggacgaagacgaggatgaggaagactatcacaacgagggctacttg 18827207
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 294 agcagctctgctcttgagggctgtgcagcgagcagctaggccaggtccaagccccctcct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825857 agcagctctgctcttgagggctgtgcagcgagcagctaggccaggtccaagccccctcct 18825916
Query: 354 gcagatggaggcggtcagcctgatcccctacgcgctgggcctcctgctgctgcccctctt 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 18825917 gcagatggaggcggtcagcctgatcccctacgcactgggcctcctgctgctgcccctctt 18825976
Query: 414 ggccgtgttgctgatggcactgtgtgtgcgttgccgagagctgccagg 461
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18825977 ggccgtgttgctgatggcactgtgtgtgcgttgccgagagctgccagg 18826024
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 524 ccacacttgccccctggccaccagccacttcctacccgcctatgacctcctacccacccc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18826652 ccacacttgccccctggccaccagccacttcctacccgcctatgacctcctacccacccc 18826711
Query: 584 tgagccagccagatctgctccccatcccg 612
|||||||||||||||||||||||||||||
Sbjct: 18826712 tgagccagccagatctgctccccatcccg 18826740
Score = 172 bits (87), Expect = 2e-40
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 855 ggtggtgcttcccgacagcgtcccagccactggcgccacggtcccagcagctcctgcgtc 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18827279 ggtggtgcttcccgacagcgtcccagccactggcgccacggtcccagcagctcctgcgtc 18827338
Query: 915 cagcaagcccggcctccgagacagcgccttctcca 949
|| ||||||||||||||||||||||||||| ||||
Sbjct: 18827339 caacaagcccggcctccgagacagcgccttttcca 18827373
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 612 gcgatccccgcagccccccggaggctcccaccgcatgccttcttcccggcaggactcaga 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18826873 gcgatccccgcagccccccggaggctcccaccgcatgccttcttcccggcaggactcaga 18826932
Query: 672 tggtg 676
|||||
Sbjct: 18826933 tggtg 18826937
Score = 101 bits (51), Expect = 7e-19
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 950 tggagtccggggaagat-acgtgaacgttcctgagagtgaggagagtgcaaatgcgtctc 1008
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18829051 tggagtccggggaagattacgtgaacgttcctgagagtgaggagagtgcagatgcgtctc 18829110
Query: 1009 taa 1011
|||
Sbjct: 18829111 taa 18829113
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 481 cccgatagtttgaccccaagtagcatcgtgatcaagcggcctc 523
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18826361 cccgctagtttgaccccaagtagcatcgtgatcaagcggcctc 18826403
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 457 ccaggctcatatgacactgctgcccccgatag 488
||||||||||||||||||||||||||||||||
Sbjct: 18826212 ccaggctcatatgacactgctgcccccgatag 18826243
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,825,137
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 9
Length of query: 1041
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1020
Effective length of database: 2,808,413,156
Effective search space: 2864581419120
Effective search space used: 2864581419120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)