Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002906
(966 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776739.1| fatty acid-binding protein, adipocyte [Bos taur... 229 2e-60
Alignment gi|NP_001068707.1| myelin P2 protein [Bos taurus]. 186 2e-47
Alignment gi|NP_776738.1| fatty acid-binding protein, heart [Bos taurus]. 175 5e-44
Alignment gi|NP_001179339.1| fatty acid-binding protein 9 [Bos taurus]. 170 2e-42
Alignment gi|XP_002692760.1| PREDICTED: fatty acid-binding protein 9-like... 170 2e-42
Alignment gi|NP_001071630.1| fatty acid-binding protein, brain [Bos tauru... 158 6e-39
Alignment gi|XP_002692761.1| PREDICTED: fatty acid binding protein 12-lik... 156 2e-38
Alignment gi|NP_776740.1| fatty acid-binding protein, epidermal [Bos taur... 150 2e-36
Alignment gi|XP_002688416.1| PREDICTED: fatty acid binding protein 3-like... 148 6e-36
Alignment gi|XP_002692762.1| PREDICTED: fatty acid binding protein 12-lik... 119 4e-27
>ref|NP_776739.1| fatty acid-binding protein, adipocyte [Bos taurus].
Length = 132
Score = 229 bits (585), Expect = 2e-60
Identities = 108/132 (81%), Positives = 123/132 (93%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKP LII++NG ++TI+SESTFKN
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPTLIISLNGGVVTIKSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEFDE+T DDRKVKS + LD GALVQVQ WDGK+TTI RK++DDK+V+EC+M
Sbjct: 61 TEISFKLGQEFDEITPDDRKVKSIVNLDEGALVQVQNWDGKSTTIKRKLMDDKMVLECVM 120
Query: 431 KGVTATRIYERA 466
GVTATR+YERA
Sbjct: 121 NGVTATRVYERA 132
>ref|NP_001068707.1| myelin P2 protein [Bos taurus].
Length = 132
Score = 186 bits (473), Expect = 2e-47
Identities = 90/131 (68%), Positives = 108/131 (82%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSENFD+YMK +GVG ATRK+ +AKP +II+ GD+ITIR+ES FKN
Sbjct: 1 MSNKFLGTWKLVSSENFDEYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESPFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEF+E TAD+RK KST+TL G+L QVQKWDG TTI RK+VD K+VVEC M
Sbjct: 61 TEISFKLGQEFEETTADNRKTKSTVTLARGSLNQVQKWDGNETTIKRKLVDGKMVVECKM 120
Query: 431 KGVTATRIYER 463
K V TRIYE+
Sbjct: 121 KDVVCTRIYEK 131
>ref|NP_776738.1| fatty acid-binding protein, heart [Bos taurus].
Length = 133
Score = 175 bits (444), Expect = 5e-44
Identities = 84/131 (64%), Positives = 102/131 (77%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M DAFVGTWKLV S+NFDDYMK +GVGFATR+V M KP II VNGD + I+++STFKN
Sbjct: 1 MVDAFVGTWKLVDSKNFDDYMKSLGVGFATRQVGNMTKPTTIIEVNGDTVIIKTQSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG EFDE TADDRKVKS +TLDGG LV VQKW+G+ T++ R++VD KL++
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQKWNGQETSLVREMVDGKLILTLTH 120
Query: 431 KGVTATRIYER 463
TR YE+
Sbjct: 121 GTAVCTRTYEK 131
>ref|NP_001179339.1| fatty acid-binding protein 9 [Bos taurus].
Length = 132
Score = 170 bits (430), Expect = 2e-42
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVS ENFD+YMKE+GV A + +AG AKP +II+ +GD I+I+++S FKN
Sbjct: 1 MVEPFLGTWKLVSRENFDEYMKELGVSVAVQNLAGSAKPRIIISADGDKISIKTQSAFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
+EI+FKLG+EFDE T D+RKVKS ITLDGG+++ VQKW GK TTI RKIVD K++VE IM
Sbjct: 61 SEISFKLGEEFDETTIDNRKVKSIITLDGGSMIHVQKWLGKETTIKRKIVDGKMLVEYIM 120
Query: 431 KGVTATRIYER 463
V +T + E+
Sbjct: 121 NNVVSTGVCEK 131
>ref|XP_002692760.1| PREDICTED: fatty acid-binding protein 9-like [Bos taurus].
Length = 132
Score = 170 bits (430), Expect = 2e-42
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVS ENFD+YMKE+GV A + +AG AKP +II+ +GD I+I+++S FKN
Sbjct: 1 MVEPFLGTWKLVSRENFDEYMKELGVSVAVQNLAGSAKPRIIISADGDKISIKTQSAFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
+EI+FKLG+EFDE T D+RKVKS ITLDGG+++ VQKW GK TTI RKIVD K++VE IM
Sbjct: 61 SEISFKLGEEFDETTIDNRKVKSIITLDGGSMIHVQKWLGKETTIKRKIVDGKMLVEYIM 120
Query: 431 KGVTATRIYER 463
V +T + E+
Sbjct: 121 NNVVSTGVCEK 131
>ref|NP_001071630.1| fatty acid-binding protein, brain [Bos taurus].
Length = 132
Score = 158 bits (400), Expect = 6e-39
Identities = 75/132 (56%), Positives = 95/132 (71%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M +AF TWKL S+NFD+YMK +GVGFATR+V + KP +II+ GD + IR++STFKN
Sbjct: 1 MVEAFCATWKLTESQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDRVVIRTQSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+F LG+EFDE TADDR KS ++LDG LV VQKWDGK T R+I D K+++
Sbjct: 61 TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMIMTLTF 120
Query: 431 KGVTATRIYERA 466
V A R YE+A
Sbjct: 121 GDVVAVRHYEKA 132
>ref|XP_002692761.1| PREDICTED: fatty acid binding protein 12-like isoform 1 [Bos
taurus].
Length = 140
Score = 156 bits (395), Expect = 2e-38
Identities = 73/131 (55%), Positives = 97/131 (74%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M D F GTWK +S ENF++YMKE+G+G A+RK+ +AKP + I D+ITI+++S FKN
Sbjct: 1 MVDLFQGTWKSISCENFEEYMKELGIGRASRKLGCLAKPTVTIMTKEDLITIKTKSIFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
+I+FKLG+EF+E T K KST+ LD +LVQVQ WDGK TI RK+VD+K+VVE ++
Sbjct: 61 NDISFKLGEEFEETTPGGHKTKSTVILDDDSLVQVQDWDGKEITIRRKLVDEKMVVESVV 120
Query: 431 KGVTATRIYER 463
VT TR YER
Sbjct: 121 NNVTCTRTYER 131
>ref|NP_776740.1| fatty acid-binding protein, epidermal [Bos taurus].
Length = 135
Score = 150 bits (379), Expect = 2e-36
Identities = 71/126 (56%), Positives = 93/126 (73%)
Frame = +2
Query: 86 VGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAF 265
VG W+LV S+ FD+YMKEVGVG A RKV MAKP+ IIT +G ++I++EST K T+ +
Sbjct: 8 VGRWRLVESKGFDEYMKEVGVGMALRKVGAMAKPDCIITSDGKNLSIKTESTLKTTQFSC 67
Query: 266 KLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVTA 445
KLG++F+E TAD RK ++ GALVQ Q+WDGK +TI RK+ D KLVV C+M VT
Sbjct: 68 KLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLEDGKLVVVCVMNNVTC 127
Query: 446 TRIYER 463
TR+YE+
Sbjct: 128 TRVYEK 133
>ref|XP_002688416.1| PREDICTED: fatty acid binding protein 3-like [Bos taurus].
Length = 153
Score = 148 bits (374), Expect = 6e-36
Identities = 69/128 (53%), Positives = 92/128 (71%)
Frame = +2
Query: 77 DAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTE 256
D F+GTWKLV S NFDDYMK +GVGFAT++ A + KP +I VN D ITI+++S F+N E
Sbjct: 23 DTFMGTWKLVDSRNFDDYMKSLGVGFATKQAANITKPITVIEVNVDTITIKTQSVFQNRE 82
Query: 257 IAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKG 436
++F+LG F+E TADDRKVKS + LDGG V VQ W+G+ TT+ R+IVD+KL++
Sbjct: 83 VSFELGVNFNETTADDRKVKSIVMLDGGKFVHVQNWNGQETTLVREIVDEKLILPLTHCS 142
Query: 437 VTATRIYE 460
R Y+
Sbjct: 143 AVCNRTYK 150
>ref|XP_002692762.1| PREDICTED: fatty acid binding protein 12-like isoform 2 [Bos
taurus].
Length = 130
Score = 119 bits (298), Expect = 4e-27
Identities = 57/105 (54%), Positives = 76/105 (72%)
Frame = +2
Query: 149 GFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFKLGQEFDEVTADDRKVKSTIT 328
G A+RK+ +AKP + I D+ITI+++S FKN +I+FKLG+EF+E T K KST+
Sbjct: 17 GRASRKLGCLAKPTVTIMTKEDLITIKTKSIFKNNDISFKLGEEFEETTPGGHKTKSTVI 76
Query: 329 LDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVTATRIYER 463
LD +LVQVQ WDGK TI RK+VD+K+VVE ++ VT TR YER
Sbjct: 77 LDDDSLVQVQDWDGKEITIRRKLVDEKMVVESVVNNVTCTRTYER 121
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,134,539
Number of extensions: 795714
Number of successful extensions: 1582
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1573
Number of HSP's successfully gapped: 20
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002906
(966 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850162.1| PREDICTED: similar to Fatty acid-binding protei... 244 1e-64
Alignment gi|XP_543759.2| PREDICTED: similar to Fatty acid-binding protei... 240 1e-63
Alignment gi|XP_548843.2| PREDICTED: similar to Fatty acid-binding protei... 239 2e-63
Alignment gi|XP_860850.1| PREDICTED: similar to Fatty acid-binding protei... 202 5e-52
Alignment gi|XP_544144.2| PREDICTED: similar to Myelin P2 protein [Canis ... 191 7e-49
Alignment gi|XP_535331.1| PREDICTED: similar to Fatty acid-binding protei... 181 1e-45
Alignment gi|XP_544145.2| PREDICTED: similar to fatty acid binding protei... 169 5e-42
Alignment gi|XP_533484.2| PREDICTED: similar to Fatty acid-binding protei... 155 4e-38
Alignment gi|XP_544146.2| PREDICTED: similar to Myelin P2 protein [Canis ... 150 1e-36
Alignment gi|XP_535112.2| PREDICTED: similar to Fatty acid-binding protei... 122 4e-28
>ref|XP_850162.1| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP)
isoform 1 [Canis familiaris].
Length = 132
Score = 244 bits (622), Expect = 1e-64
Identities = 120/132 (90%), Positives = 127/132 (96%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKL SSENFDDYMKEVGVGFATRKVAGMAKPN+II+VNGD+ITI+SESTFKN
Sbjct: 1 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEFDEVTADDRKVKS ITLDGG LVQVQKWDGK+TTI RK VDDKLVVECIM
Sbjct: 61 TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVQVQKWDGKSTTIKRKRVDDKLVVECIM 120
Query: 431 KGVTATRIYERA 466
KGVT+TRIYERA
Sbjct: 121 KGVTSTRIYERA 132
>ref|XP_543759.2| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP) [Canis
familiaris].
Length = 132
Score = 240 bits (613), Expect = 1e-63
Identities = 118/132 (89%), Positives = 127/132 (96%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKL SSENFDDYMKEVGVGFATRKVAGMAKP++II+VNGD+ITI+SESTFKN
Sbjct: 1 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPSMIISVNGDVITIKSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEFDEVTADDRKVKS ITLDGG LV+VQKWDGK+TTI RK VDDKLVVECIM
Sbjct: 61 TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVRVQKWDGKSTTIKRKQVDDKLVVECIM 120
Query: 431 KGVTATRIYERA 466
KGVT+TRIYERA
Sbjct: 121 KGVTSTRIYERA 132
>ref|XP_548843.2| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP) [Canis
familiaris].
Length = 183
Score = 239 bits (611), Expect = 2e-63
Identities = 119/135 (88%), Positives = 126/135 (93%)
Frame = +2
Query: 62 AHKMCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSEST 241
AHKMCDAFVGTWKL SSENFDDYMKEVGVGFATRKVAGMAKPN II+VNGD+ITI+SEST
Sbjct: 49 AHKMCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNRIISVNGDVITIKSEST 108
Query: 242 FKNTEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVE 421
FKNTEI+FKLGQEFDEVTAD R VKS ITLDGG LVQVQKWDG++TTI RK VDDKLVVE
Sbjct: 109 FKNTEISFKLGQEFDEVTADYRNVKSIITLDGGVLVQVQKWDGESTTIKRKQVDDKLVVE 168
Query: 422 CIMKGVTATRIYERA 466
CI KGVT+TRIYERA
Sbjct: 169 CIRKGVTSTRIYERA 183
>ref|XP_860850.1| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP) (P2
adipocyte protein) (Myelin P2 protein homolog) (3T3-L1
lipid binding protein) (422 protein) (P15) isoform 2
[Canis familiaris].
Length = 111
Score = 202 bits (513), Expect = 5e-52
Identities = 98/108 (90%), Positives = 104/108 (96%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKL SSENFDDYMKEVGVGFATRKVAGMAKPN+II+VNGD+ITI+SESTFKN
Sbjct: 1 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRK 394
TEI+FKLGQEFDEVTADDRKVKS ITLDGG LVQVQKWDGK+TTI RK
Sbjct: 61 TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVQVQKWDGKSTTIKRK 108
>ref|XP_544144.2| PREDICTED: similar to Myelin P2 protein [Canis familiaris].
Length = 132
Score = 191 bits (486), Expect = 7e-49
Identities = 92/131 (70%), Positives = 110/131 (83%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSE+FDDYMK +GVG ATRK+ +AKP +II+ GD+ITIR+ESTFKN
Sbjct: 1 MSNRFLGTWKLVSSEHFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEF+E TAD+RK KS +TL G+L QVQKWDGK TTI RK+VD K+VVEC M
Sbjct: 61 TEISFKLGQEFEETTADNRKAKSIVTLSRGSLNQVQKWDGKETTIKRKLVDGKMVVECKM 120
Query: 431 KGVTATRIYER 463
KGV TRIYE+
Sbjct: 121 KGVVCTRIYEK 131
>ref|XP_535331.1| PREDICTED: similar to Fatty acid-binding protein, heart (H-FABP)
(Heart-type fatty acid-binding protein) (Muscle fatty
acid-binding protein) (M-FABP) (Mammary-derived growth
inhibitor) (MDGI) isoform 1 [Canis familiaris].
Length = 133
Score = 181 bits (458), Expect = 1e-45
Identities = 86/131 (65%), Positives = 103/131 (78%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M DAFVGTWKLV S+NFDDYMK +GVGFATR+VA M KP +I +NGD I I++ STFKN
Sbjct: 1 MVDAFVGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTVIEMNGDTIIIKTHSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG EFDE TADDRKVKST+TLDGG LV VQKW+G+ TT+ R++VD KL++
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSTVTLDGGKLVHVQKWNGQETTLVRELVDGKLILTLTH 120
Query: 431 KGVTATRIYER 463
TR YE+
Sbjct: 121 GSAVCTRTYEK 131
>ref|XP_544145.2| PREDICTED: similar to fatty acid binding protein 9, testis [Canis
familiaris].
Length = 132
Score = 169 bits (427), Expect = 5e-42
Identities = 78/131 (59%), Positives = 106/131 (80%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSENF++Y+K++G+ A R +AG+AKP + I+ NGD + I++ES+FKN
Sbjct: 1 MIEPFLGTWKLVSSENFEEYLKQLGMNAAARNLAGLAKPRISISANGDEVNIKTESSFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG+EF+E+TAD+RKVKS ITL G+++ VQKW GK TTI R+IVD K+VVE M
Sbjct: 61 TEISFKLGEEFEEITADNRKVKSIITLTSGSMIHVQKWLGKETTIKRQIVDGKMVVEYSM 120
Query: 431 KGVTATRIYER 463
+TRIYE+
Sbjct: 121 NKTVSTRIYEK 131
>ref|XP_533484.2| PREDICTED: similar to Fatty acid-binding protein, brain (B-FABP)
(Brain lipid-binding protein) (BLBP) (Mammary derived
growth inhibitor related) [Canis familiaris].
Length = 132
Score = 155 bits (393), Expect = 4e-38
Identities = 75/132 (56%), Positives = 93/132 (70%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M +AF TWKL S+NFD+YMK +GVGFATR+V + KP +II GD + IR++ TFKN
Sbjct: 1 MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIIGQEGDKVVIRTQCTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+F LG+EFDE TADDR KS ++LDG LV VQKWDGK T R+I D K+V+
Sbjct: 61 TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 431 KGVTATRIYERA 466
V A R YE+A
Sbjct: 121 GDVVAVRQYEKA 132
>ref|XP_544146.2| PREDICTED: similar to Myelin P2 protein [Canis familiaris].
Length = 140
Score = 150 bits (380), Expect = 1e-36
Identities = 71/131 (54%), Positives = 94/131 (71%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M D G WK +S ENF++YMKE+G+G A+RK+A +AKP + I+ D ITI+++S FKN
Sbjct: 1 MVDQLQGKWKSISCENFEEYMKELGIGRASRKLACLAKPTVTISTQEDWITIKTKSIFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
+I+FKLG+EF+E T K KS +TLD +L+QVQ WDGK TI RK+VD K+VVE +
Sbjct: 61 NKISFKLGEEFEETTPGGHKTKSVVTLDNDSLIQVQDWDGKENTIRRKLVDGKMVVESAV 120
Query: 431 KGVTATRIYER 463
VT TR YER
Sbjct: 121 NNVTCTRTYER 131
>ref|XP_535112.2| PREDICTED: similar to Fatty acid-binding protein, epidermal
(E-FABP) (Psoriasis-associated fatty acid-binding
protein homolog) (PA-FABP) [Canis familiaris].
Length = 165
Score = 122 bits (307), Expect = 4e-28
Identities = 59/107 (55%), Positives = 77/107 (71%)
Frame = +2
Query: 143 GVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFKLGQEFDEVTADDRKVKST 322
GVG A RKV MAKP+ II+ +G +TI++EST K T+ + LG++F+E TAD RK ++
Sbjct: 57 GVGMALRKVGAMAKPDCIISSDGKNLTIKTESTLKTTQFSCNLGEKFEETTADGRKTQTV 116
Query: 323 ITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVTATRIYER 463
GALVQ Q+WDGK +TI RK+ D KLVVEC+M VT TRIYE+
Sbjct: 117 CNFTDGALVQHQEWDGKESTITRKLEDGKLVVECVMNNVTCTRIYEK 163
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,508,564
Number of extensions: 801191
Number of successful extensions: 1508
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 20
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002906
(966 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001433.1| fatty acid-binding protein, adipocyte [Homo sap... 240 1e-63
Alignment gi|NP_002668.1| myelin P2 protein [Homo sapiens]. 189 4e-48
Alignment gi|NP_001073995.1| fatty acid-binding protein 9 [Homo sapiens]. 184 8e-47
Alignment gi|NP_004093.1| fatty acid-binding protein, heart [Homo sapiens]. 177 2e-44
Alignment gi|NP_001437.1| fatty acid-binding protein, brain [Homo sapiens]. 157 1e-38
Alignment gi|NP_001098751.1| fatty acid-binding protein 12 [Homo sapiens]. 154 1e-37
Alignment gi|NP_001435.1| fatty acid-binding protein, epidermal [Homo sap... 149 4e-36
Alignment gi|NP_443192.1| retinoid-binding protein 7 [Homo sapiens]. 99 6e-21
Alignment gi|NP_004369.1| cellular retinoic acid-binding protein 1 [Homo ... 89 5e-18
Alignment gi|NP_002890.2| retinol-binding protein 1 isoform a [Homo sapie... 88 1e-17
>ref|NP_001433.1| fatty acid-binding protein, adipocyte [Homo sapiens].
Length = 132
Score = 240 bits (613), Expect = 1e-63
Identities = 117/132 (88%), Positives = 126/132 (95%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPN+II+VNGD+ITI+SESTFKN
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+F LGQEFDEVTADDRKVKSTITLDGG LV VQKWDGK+TTI RK DDKLVVEC+M
Sbjct: 61 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 120
Query: 431 KGVTATRIYERA 466
KGVT+TR+YERA
Sbjct: 121 KGVTSTRVYERA 132
>ref|NP_002668.1| myelin P2 protein [Homo sapiens].
Length = 132
Score = 189 bits (479), Expect = 4e-48
Identities = 90/131 (68%), Positives = 109/131 (83%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSENFDDYMK +GVG ATRK+ +AKP +II+ GD+ITIR+ESTFKN
Sbjct: 1 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEF+E TAD+RK KS +TL G+L QVQ+WDGK TTI RK+V+ K+V EC M
Sbjct: 61 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 120
Query: 431 KGVTATRIYER 463
KGV TRIYE+
Sbjct: 121 KGVVCTRIYEK 131
>ref|NP_001073995.1| fatty acid-binding protein 9 [Homo sapiens].
Length = 132
Score = 184 bits (468), Expect = 8e-47
Identities = 85/131 (64%), Positives = 112/131 (85%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSENF+DYMKE+GV FA R +AG+ KP + I+V+G M+TIR+ES+F++
Sbjct: 1 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
T+I+FKLG+EFDE TAD+RKVKSTITL+ G+++ VQKW GK TTI RKIVD+K+VVEC M
Sbjct: 61 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM 120
Query: 431 KGVTATRIYER 463
+ +TRIYE+
Sbjct: 121 NNIVSTRIYEK 131
>ref|NP_004093.1| fatty acid-binding protein, heart [Homo sapiens].
Length = 133
Score = 177 bits (448), Expect = 2e-44
Identities = 83/131 (63%), Positives = 103/131 (78%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M DAF+GTWKLV S+NFDDYMK +GVGFATR+VA M KP II NGD++T+++ STFKN
Sbjct: 1 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG EFDE TADDRKVKS +TLDGG LV +QKWDG+ TT+ R+++D KL++
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 120
Query: 431 KGVTATRIYER 463
TR YE+
Sbjct: 121 GTAVCTRTYEK 131
>ref|NP_001437.1| fatty acid-binding protein, brain [Homo sapiens].
Length = 132
Score = 157 bits (398), Expect = 1e-38
Identities = 75/132 (56%), Positives = 96/132 (72%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M +AF TWKL +S+NFD+YMK +GVGFATR+V + KP +II+ GD + IR+ STFKN
Sbjct: 1 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+F+LG+EFDE TADDR KS ++LDG LV +QKWDGK T R+I D K+V+
Sbjct: 61 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 431 KGVTATRIYERA 466
V A R YE+A
Sbjct: 121 GDVVAVRHYEKA 132
>ref|NP_001098751.1| fatty acid-binding protein 12 [Homo sapiens].
Length = 140
Score = 154 bits (389), Expect = 1e-37
Identities = 72/131 (54%), Positives = 97/131 (74%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M D GTWK +S EN +DYMKE+G+G A+RK+ +AKP + I+ +GD+ITI+++S FKN
Sbjct: 1 MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
EI+FKLG+EF+E+T K KS +TLD +L+QVQ WDGK TTI RK+VD K+VVE +
Sbjct: 61 NEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVESTV 120
Query: 431 KGVTATRIYER 463
V TR YE+
Sbjct: 121 NSVICTRTYEK 131
>ref|NP_001435.1| fatty acid-binding protein, epidermal [Homo sapiens].
Length = 135
Score = 149 bits (376), Expect = 4e-36
Identities = 70/125 (56%), Positives = 92/125 (73%)
Frame = +2
Query: 89 GTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFK 268
G W+LV S+ FD+YMKE+GVG A RK+ MAKP+ IIT +G +TI++EST K T+ +
Sbjct: 9 GRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCT 68
Query: 269 LGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVTAT 448
LG++F+E TAD RK ++ GALVQ Q+WDGK +TI RK+ D KLVVEC+M VT T
Sbjct: 69 LGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCT 128
Query: 449 RIYER 463
RIYE+
Sbjct: 129 RIYEK 133
>ref|NP_443192.1| retinoid-binding protein 7 [Homo sapiens].
Length = 134
Score = 99.0 bits (245), Expect = 6e-21
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Frame = +2
Query: 89 GTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFK 268
GTW L+SS+NF+ YM +G+ FATRK+A + KP +I NGD TI + S+ +N + FK
Sbjct: 7 GTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYFVKFK 66
Query: 269 LGQEFDEVT--ADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVT 442
+G+EFDE D+RK KS + D L +QK + K I DKL +E +G
Sbjct: 67 VGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQV 126
Query: 443 ATRIYERA 466
+ ++RA
Sbjct: 127 CKQTFQRA 134
>ref|NP_004369.1| cellular retinoic acid-binding protein 1 [Homo sapiens].
Length = 137
Score = 89.4 bits (220), Expect = 5e-18
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Frame = +2
Query: 83 FVGTWKLVSSENFDDYMKEVGVGFATRKVAGMA--KPNLIITVNGDMITIRSESTFKNTE 256
F GTWK+ SSENFD+ +K +GV RKVA A KP++ I +GD I++ +T + TE
Sbjct: 4 FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63
Query: 257 IAFKLGQEFDEVTADDRKVKSTITLDGGALVQ----VQKWDGKTTTINRKIVDDKLVVEC 424
I FK+G+ F+E T D RK +S T + + + + DG T R++ +D+L++
Sbjct: 64 INFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123
Query: 425 IMKGVTATRIYER 463
V TRIY R
Sbjct: 124 GADDVVCTRIYVR 136
>ref|NP_002890.2| retinol-binding protein 1 isoform a [Homo sapiens].
Length = 197
Score = 88.2 bits (217), Expect = 1e-17
Identities = 46/129 (35%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Frame = +2
Query: 83 FVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIA 262
F G WK++ +ENF++Y++ + V A RK+A + KP+ I +GD + IR+ STF+N +
Sbjct: 67 FTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMD 126
Query: 263 FKLGQEFDE--VTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKG 436
F++G+EF+E DDRK +T++ DG L VQK + + + I D+L +E ++G
Sbjct: 127 FQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEG 186
Query: 437 VTATRIYER 463
V +++++
Sbjct: 187 VVCKQVFKK 195
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,938,137
Number of extensions: 792888
Number of successful extensions: 1556
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 17
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002906
(966 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077717.1| fatty acid-binding protein, adipocyte [Mus musc... 239 2e-63
Alignment gi|NP_001025476.1| myelin P2 protein [Mus musculus]. 186 3e-47
Alignment gi|NP_034304.1| fatty acid-binding protein, heart [Mus musculus]. 181 6e-46
Alignment gi|NP_035728.2| fatty acid-binding protein 9 [Mus musculus]. 165 4e-41
Alignment gi|NP_083586.1| fatty acid-binding protein 12 [Mus musculus]. 154 8e-38
Alignment gi|NP_067247.1| fatty acid-binding protein, brain [Mus musculus]. 151 6e-37
Alignment gi|NP_034764.1| fatty acid-binding protein, epidermal [Mus musc... 148 7e-36
Alignment gi|NP_071303.1| retinoid-binding protein 7 [Mus musculus]. 93 3e-19
Alignment gi|NP_038524.1| cellular retinoic acid-binding protein 1 [Mus m... 89 7e-18
Alignment gi|NP_035384.1| retinol-binding protein 1 [Mus musculus]. 88 9e-18
>ref|NP_077717.1| fatty acid-binding protein, adipocyte [Mus musculus].
Length = 132
Score = 239 bits (611), Expect = 2e-63
Identities = 116/132 (87%), Positives = 126/132 (95%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPN+II+VNGD++TIRSESTFKN
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDLVTIRSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG EFDE+TADDRKVKS ITLDGGALVQVQKWDGK+TTI RK DKLVVEC+M
Sbjct: 61 TEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVM 120
Query: 431 KGVTATRIYERA 466
KGVT+TR+YERA
Sbjct: 121 KGVTSTRVYERA 132
>ref|NP_001025476.1| myelin P2 protein [Mus musculus].
Length = 132
Score = 186 bits (471), Expect = 3e-47
Identities = 88/131 (67%), Positives = 107/131 (81%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSE+FDDYMK +GVG A RK+ +AKP +II+ GD ITIR+ES FKN
Sbjct: 1 MSNKFLGTWKLVSSEHFDDYMKALGVGLANRKLGNLAKPTVIISKKGDYITIRTESAFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEFDE TAD+RK KS +TL+ G+L QVQKWDGK T I R ++D ++VVECIM
Sbjct: 61 TEISFKLGQEFDETTADNRKAKSIVTLERGSLKQVQKWDGKETAIRRTLLDGRMVVECIM 120
Query: 431 KGVTATRIYER 463
KGV TRIYE+
Sbjct: 121 KGVVCTRIYEK 131
>ref|NP_034304.1| fatty acid-binding protein, heart [Mus musculus].
Length = 133
Score = 181 bits (460), Expect = 6e-46
Identities = 87/131 (66%), Positives = 105/131 (80%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M DAFVGTWKLV S+NFDDYMK +GVGFATR+VA M KP II NGD ITI+++STFKN
Sbjct: 1 MADAFVGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDTITIKTQSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI F+LG EFDEVTADDRKVKS +TLDGG L+ VQKW+G+ TT+ R++VD KL++
Sbjct: 61 TEINFQLGIEFDEVTADDRKVKSLVTLDGGKLIHVQKWNGQETTLTRELVDGKLILTLTH 120
Query: 431 KGVTATRIYER 463
V +TR YE+
Sbjct: 121 GSVVSTRTYEK 131
>ref|NP_035728.2| fatty acid-binding protein 9 [Mus musculus].
Length = 132
Score = 165 bits (418), Expect = 4e-41
Identities = 78/131 (59%), Positives = 105/131 (80%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKL+SSENF++Y++E+GV RKVA + KP++ I+ NG+ + I++ S +N
Sbjct: 1 MIEPFLGTWKLISSENFENYVRELGVECEPRKVACLIKPSVSISFNGERMDIQAGSACRN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG+EF+E TAD+RKVKS IT +GG+++QVQKW GK TTI RKIVD K+VVEC M
Sbjct: 61 TEISFKLGEEFEETTADNRKVKSLITFEGGSMIQVQKWLGKQTTIKRKIVDGKMVVECTM 120
Query: 431 KGVTATRIYER 463
V +TRIYER
Sbjct: 121 NNVVSTRIYER 131
>ref|NP_083586.1| fatty acid-binding protein 12 [Mus musculus].
Length = 132
Score = 154 bits (390), Expect = 8e-38
Identities = 74/131 (56%), Positives = 98/131 (74%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M D GTWK VS +NF++YMKE+GVG A+RK+ +AKP + I+ +GD+ITI+++S FKN
Sbjct: 1 MVDQLQGTWKSVSCDNFENYMKELGVGRASRKLGCLAKPTVTISTDGDLITIKTKSIFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
EI+FKLG+EF+E T RK KST+ LD +LVQVQ WDGK TI R++VD K+VVE +
Sbjct: 61 KEISFKLGEEFEETTPSGRKSKSTVILDNDSLVQVQDWDGKEATICRRLVDGKMVVESAV 120
Query: 431 KGVTATRIYER 463
VT TR Y+R
Sbjct: 121 NNVTCTRTYQR 131
>ref|NP_067247.1| fatty acid-binding protein, brain [Mus musculus].
Length = 132
Score = 151 bits (382), Expect = 6e-37
Identities = 71/132 (53%), Positives = 91/132 (68%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M DAF TWKL S+NFD+YMK +GVGFATR+V + KP +II+ G + IR++ TFKN
Sbjct: 1 MVDAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGGKVVIRTQCTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI F+LG+EF+E + DDR KS + LDG L+ VQKWDGK T R+I D K+VV
Sbjct: 61 TEINFQLGEEFEETSIDDRNCKSVVRLDGDKLIHVQKWDGKETNCTREIKDGKMVVTLTF 120
Query: 431 KGVTATRIYERA 466
+ A R YE+A
Sbjct: 121 GDIVAVRCYEKA 132
>ref|NP_034764.1| fatty acid-binding protein, epidermal [Mus musculus].
Length = 135
Score = 148 bits (373), Expect = 7e-36
Identities = 67/125 (53%), Positives = 92/125 (73%)
Frame = +2
Query: 89 GTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFK 268
G W+L+ S F++YMKE+GVG A RK+A MAKP+ IIT +G+ IT+++EST K T +
Sbjct: 9 GKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCN 68
Query: 269 LGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVTAT 448
LG++FDE TAD RK ++ T GALVQ Q+WDGK +TI RK+ D K++VEC+M T T
Sbjct: 69 LGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCT 128
Query: 449 RIYER 463
R+YE+
Sbjct: 129 RVYEK 133
>ref|NP_071303.1| retinoid-binding protein 7 [Mus musculus].
Length = 134
Score = 93.2 bits (230), Expect = 3e-19
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Frame = +2
Query: 89 GTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFK 268
GTW L+SS+NF+ YM +G+ FATRK+A + KP +I NGD TI++ S+ +N + FK
Sbjct: 7 GTWNLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIQTCSSLRNYLVKFK 66
Query: 269 LGQEFDEVT--ADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVT 442
+G+EF+E D+RK S +T + L VQ+ + K + I D+L +E +G
Sbjct: 67 VGEEFEEDNKGLDNRKCTSLVTWENDKLTCVQRGEKKNRGWSHWIEGDQLHLEMFCEGQV 126
Query: 443 ATRIYERA 466
+ ++RA
Sbjct: 127 CKQTFQRA 134
>ref|NP_038524.1| cellular retinoic acid-binding protein 1 [Mus musculus].
Length = 137
Score = 88.6 bits (218), Expect = 7e-18
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Frame = +2
Query: 83 FVGTWKLVSSENFDDYMKEVGVGFATRKVAGMA--KPNLIITVNGDMITIRSESTFKNTE 256
F GTWK+ SSENFD+ +K +GV RKVA A KP++ I +GD I++ +T + TE
Sbjct: 4 FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63
Query: 257 IAFKLGQEFDEVTADDRKVKSTITLDGGALVQ----VQKWDGKTTTINRKIVDDKLVVEC 424
I FK+G+ F+E T D RK +S T + + + + DG T R++ +D+L++
Sbjct: 64 INFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123
Query: 425 IMKGVTATRIYER 463
V TRIY R
Sbjct: 124 GADDVVCTRIYVR 136
>ref|NP_035384.1| retinol-binding protein 1 [Mus musculus].
Length = 135
Score = 88.2 bits (217), Expect = 9e-18
Identities = 47/129 (36%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Frame = +2
Query: 83 FVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIA 262
F G WK++S+ENF++Y++ + V A RK+A + KP+ I +GD + IR+ STF+N +
Sbjct: 5 FNGYWKMLSNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMD 64
Query: 263 FKLGQEFDE--VTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKG 436
F++G+EF+E DDRK +T++ DG L VQK + + + I D+L +E +G
Sbjct: 65 FQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRAEG 124
Query: 437 VTATRIYER 463
V +++++
Sbjct: 125 VICKQVFKK 133
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,234,533
Number of extensions: 678634
Number of successful extensions: 1593
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1587
Number of HSP's successfully gapped: 14
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002906
(966 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002817.1| fatty acid-binding protein, adipocyte [Sus s... 264 6e-71
Alignment gi|NP_001171994.1| myelin P2 protein [Sus scrofa]. 190 9e-49
Alignment gi|NP_001093401.1| fatty acid-binding protein, heart [Sus scrof... 176 2e-44
Alignment gi|XP_003359943.1| PREDICTED: fatty acid-binding protein, heart... 166 2e-41
Alignment gi|XP_003127755.1| PREDICTED: fatty acid-binding protein, heart... 164 5e-41
Alignment gi|NP_001020400.1| fatty acid-binding protein, brain [Sus scrof... 159 3e-39
Alignment gi|NP_001034835.1| fatty acid-binding protein, epidermal [Sus s... 146 1e-35
Alignment gi|NP_001138694.1| retinoid-binding protein 7 [Sus scrofa]. 101 5e-22
Alignment gi|NP_001121964.1| cellular retinoic acid binding protein 1 [Su... 89 3e-18
Alignment gi|XP_003357088.1| PREDICTED: fatty acid-binding protein, intes... 88 6e-18
>ref|NP_001002817.1| fatty acid-binding protein, adipocyte [Sus scrofa].
Length = 132
Score = 264 bits (674), Expect = 6e-71
Identities = 132/132 (100%), Positives = 132/132 (100%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM
Sbjct: 61 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 120
Query: 431 KGVTATRIYERA 466
KGVTATRIYERA
Sbjct: 121 KGVTATRIYERA 132
>ref|NP_001171994.1| myelin P2 protein [Sus scrofa].
Length = 132
Score = 190 bits (483), Expect = 9e-49
Identities = 92/131 (70%), Positives = 109/131 (83%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M + F+GTWKLVSSENFDDYMK +GVG ATRK+ +AKP +II+ GD+ITIR+ESTFKN
Sbjct: 1 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLGQEF+E TAD+RK KS +TL G+L QVQKWDGK TTI RK+VD K+VVEC M
Sbjct: 61 TEISFKLGQEFEETTADNRKAKSVVTLARGSLNQVQKWDGKETTIKRKLVDGKMVVECKM 120
Query: 431 KGVTATRIYER 463
K V TRIYE+
Sbjct: 121 KDVVCTRIYEK 131
>ref|NP_001093401.1| fatty acid-binding protein, heart [Sus scrofa].
Length = 133
Score = 176 bits (446), Expect = 2e-44
Identities = 84/131 (64%), Positives = 102/131 (77%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP II VNGD I I+++STFK+
Sbjct: 1 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+FKLG EFDE TADDRKVKS +TLDGG LV +QKW+G+ TT+ R++VD KL++
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 120
Query: 431 KGVTATRIYER 463
TR YE+
Sbjct: 121 GSAVCTRTYEK 131
>ref|XP_003359943.1| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
Length = 133
Score = 166 bits (419), Expect = 2e-41
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M D F+G WKLV S+NFDD MK +GVGFATR+VA M KP +I VNGD ITI+++STFK+
Sbjct: 1 MADTFMGIWKLVDSKNFDDCMKSIGVGFATRQVANMTKPTTVIEVNGDTITIKTQSTFKS 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
EI+FKLG +FDE TADDRKVKS +TLDG LV VQKW+G+ TT+ R++VD KL++
Sbjct: 61 AEISFKLGLKFDETTADDRKVKSIVTLDGSKLVHVQKWNGQETTLVRELVDGKLILTLTH 120
Query: 431 KGVTATRIYER 463
T IYE+
Sbjct: 121 GSAVCTCIYEK 131
>ref|XP_003127755.1| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
Length = 211
Score = 164 bits (416), Expect = 5e-41
Identities = 79/129 (61%), Positives = 97/129 (75%)
Frame = +2
Query: 77 DAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTE 256
DAF GTWKLV S+NF DYMK +GVGFATR+VA M KP II VNGD +TI+++STFK+TE
Sbjct: 81 DAFAGTWKLVDSKNFHDYMKSIGVGFATRQVANMTKPTTIIEVNGDTVTIKTQSTFKSTE 140
Query: 257 IAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKG 436
I+FKLG FDE TADDRKVKS +T DG LV VQKW+G+ TT+ R++VD KL++
Sbjct: 141 ISFKLGVAFDETTADDRKVKSIVTPDGSKLVHVQKWNGQETTLVRELVDGKLILTLTHGS 200
Query: 437 VTATRIYER 463
R YE+
Sbjct: 201 EVCIRTYEK 209
>ref|NP_001020400.1| fatty acid-binding protein, brain [Sus scrofa].
Length = 132
Score = 159 bits (401), Expect = 3e-39
Identities = 76/132 (57%), Positives = 95/132 (71%)
Frame = +2
Query: 71 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 250
M +AF TWKL S+NFD+YMK +GVGFATR+V + KP +II+ GD + IR++STFKN
Sbjct: 1 MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTQSTFKN 60
Query: 251 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 430
TEI+F LG+EFDE TADDR KS ++LDG LV VQKWDGK T R+I D K+V+
Sbjct: 61 TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 431 KGVTATRIYERA 466
V A R YE+A
Sbjct: 121 GDVVAVRHYEKA 132
>ref|NP_001034835.1| fatty acid-binding protein, epidermal [Sus scrofa].
Length = 135
Score = 146 bits (369), Expect = 1e-35
Identities = 69/126 (54%), Positives = 91/126 (72%)
Frame = +2
Query: 86 VGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAF 265
VG W+LV S+ FD+YMKEVGVG A RK+ MAKP+ IIT +G +TI++EST K T+ +
Sbjct: 8 VGRWRLVESKGFDEYMKEVGVGMALRKMGAMAKPDCIITFDGKDLTIKTESTLKTTQFSC 67
Query: 266 KLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVTA 445
LGQ+F+E TAD RK ++ G LVQ Q+WDGK +TI RK+ + KLVV C+M VT
Sbjct: 68 NLGQKFEETTADGRKTQTVCDFTNGELVQHQEWDGKESTITRKVENGKLVVVCVMNNVTC 127
Query: 446 TRIYER 463
TR+YE+
Sbjct: 128 TRVYEK 133
>ref|NP_001138694.1| retinoid-binding protein 7 [Sus scrofa].
Length = 134
Score = 101 bits (252), Expect = 5e-22
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Frame = +2
Query: 89 GTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEIAFK 268
GTW LVSS+NF+ YM +G+ FATRK+A + KP +I NGD TI + S+ +N + FK
Sbjct: 7 GTWNLVSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYLVKFK 66
Query: 269 LGQEFDEVT--ADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIMKGVT 442
+G+EFDE D+RK KS +T D L VQK + K I D+L +E +G
Sbjct: 67 VGEEFDEDNKGLDNRKCKSLVTWDNDRLTCVQKGEKKNRGWTHWIEGDELHLEMFCEGQV 126
Query: 443 ATRIYERA 466
+ ++RA
Sbjct: 127 CKQTFQRA 134
>ref|NP_001121964.1| cellular retinoic acid binding protein 1 [Sus scrofa].
Length = 137
Score = 89.4 bits (220), Expect = 3e-18
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Frame = +2
Query: 83 FVGTWKLVSSENFDDYMKEVGVGFATRKVAGMA--KPNLIITVNGDMITIRSESTFKNTE 256
F GTWK+ SSENFD+ +K +GV RKVA A KP++ I +GD I++ +T + TE
Sbjct: 4 FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63
Query: 257 IAFKLGQEFDEVTADDRKVKSTITLDGGALVQ----VQKWDGKTTTINRKIVDDKLVVEC 424
I FK+G+ F+E T D RK +S T + + + + DG T R++ +D+L++
Sbjct: 64 INFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123
Query: 425 IMKGVTATRIYER 463
V TRIY R
Sbjct: 124 GADDVVCTRIYVR 136
>ref|XP_003357088.1| PREDICTED: fatty acid-binding protein, intestinal-like isoform 2
[Sus scrofa].
Length = 132
Score = 88.2 bits (217), Expect = 6e-18
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Frame = +2
Query: 80 AFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKNTEI 259
AF G WK+ +EN+D +M+++G+ RK+A LIIT G+ T++ STF+N EI
Sbjct: 2 AFDGAWKIDRNENYDKFMEKMGINVVKRKLAAHDNLKLIITQEGNKFTVKESSTFRNIEI 61
Query: 260 AFKLGQEFDEVTADDRKVKSTITLDGGALV-QVQKWD-GKTTTINRKIVDDKLVVECIMK 433
F+LG F+ AD ++ L+G LV + Q+ D GK R+I+ D++V + +
Sbjct: 62 VFELGVTFNYSLADGTELTGNWNLEGNKLVGKFQRVDNGKELNTVREIIGDEMVQTYVYE 121
Query: 434 GVTATRIYER 463
GV A RI+++
Sbjct: 122 GVEAKRIFKK 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,803,307
Number of extensions: 534539
Number of successful extensions: 1050
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 20
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002906
(966 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 94 2e-16
>Sscrofa_Chr04
|| Length = 143465943
Score = 93.7 bits (47), Expect = 2e-16
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 87 taggtacctggaaacttgtctccagtgaaaactttgatgattacatgaaag 137
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 60164089 taggtacctggaaacttgtctccagtgagaactttgatgattacatgaaag 60164139
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,438,903
Number of extensions: 1579
Number of successful extensions: 1579
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1579
Number of HSP's successfully gapped: 1
Length of query: 966
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 945
Effective length of database: 2,808,413,156
Effective search space: 2653950432420
Effective search space used: 2653950432420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)