Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002908
(1331 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002684714.1| PREDICTED: ADP-ribosylation factor-like 13B ... 457 e-129
Alignment gi|XP_001787957.1| PREDICTED: ADP-ribosylation factor-like 13B ... 415 e-116
Alignment gi|XP_002699863.1| PREDICTED: ADP-ribosylation factor-like 13-l... 149 7e-36
Alignment gi|XP_590359.4| PREDICTED: ADP-ribosylation factor-like 13 [Bos... 149 7e-36
Alignment gi|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos ... 129 5e-30
Alignment gi|NP_001033656.1| ADP-ribosylation factor-like protein 3 [Bos ... 112 7e-25
Alignment gi|NP_001032696.1| ADP-ribosylation factor-related protein 1 [B... 109 6e-24
Alignment gi|NP_001039536.1| ADP-ribosylation factor-like protein 8B [Bos... 103 3e-22
Alignment gi|NP_001069250.1| ADP-ribosylation factor-like protein 6 [Bos ... 102 8e-22
Alignment gi|NP_001179271.1| ADP-ribosylation factor-like protein 11 [Bos... 99 9e-21
>ref|XP_002684714.1| PREDICTED: ADP-ribosylation factor-like 13B [Bos taurus].
Length = 429
Score = 457 bits (1177), Expect = e-129
Identities = 230/268 (85%), Positives = 232/268 (86%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MFSLMANCC WFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL
Sbjct: 1 MFSLMANCCNWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI
Sbjct: 61 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK
Sbjct: 121 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 180
Query: 869 KGLYWLLHIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH 1048
KGLYWLLHIIARDFDALNERIQKDT
Sbjct: 181 KGLYWLLHIIARDFDALNERIQKDTAEQRALEEQEKRERAERVRKLREEREQREQEQAEL 240
Query: 1049 HGTSGLAELDPEPIIVNPFQPIASVIIE 1132
HGTSG+AELDPEP+IVNPFQPIASVIIE
Sbjct: 241 HGTSGMAELDPEPVIVNPFQPIASVIIE 268
>ref|XP_001787957.1| PREDICTED: ADP-ribosylation factor-like 13B [Bos taurus].
Length = 414
Score = 415 bits (1066), Expect = e-116
Identities = 212/249 (85%), Positives = 214/249 (85%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR 565
RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR
Sbjct: 5 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR 64
Query: 566 GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG 745
GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG
Sbjct: 65 GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG 124
Query: 746 EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE 925
EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE
Sbjct: 125 EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE 184
Query: 926 RIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHGTSGLAELDPEPIIVNPF 1105
RIQKDT HGTSG+AELDPEP+IVNPF
Sbjct: 185 RIQKDTAEQRALEEQEKRERAERVRKLREEREQREQEQAELHGTSGMAELDPEPVIVNPF 244
Query: 1106 QPIASVIIE 1132
QPIASVIIE
Sbjct: 245 QPIASVIIE 253
>ref|XP_002699863.1| PREDICTED: ADP-ribosylation factor-like 13-like [Bos taurus].
Length = 385
Score = 149 bits (375), Expect = 7e-36
Identities = 82/204 (40%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPED--VAPTVGFSKI 502
MF L+ +C K + R V ++++GL N+GKT + + + P +
Sbjct: 1 MFRLLTSCWCHLKTTEKTQRHVAIIIIGLHNSGKTDLVEAFRRQLPSRSRMDSCSSSEPT 60
Query: 503 DLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHP 682
L +EV+I+DL G + R IW NYYA+++G++FV+DSSD ERM+E K + +L
Sbjct: 61 TLLVDNYEVSIYDLKGDMQGRKIWPNYYAQAHGLVFVLDSSDLERMQEVKVILPNMLSDE 120
Query: 683 RISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKS 862
R++GKPIL+LANKQDK AL D+IE L LE+L+NE+K C++EPCS V ++ +
Sbjct: 121 RVAGKPILLLANKQDKMDALPPGDIIEYLLLERLMNENKSPCRVEPCSVVKELQRR-RQP 179
Query: 863 IKKGLYWLLHIIARDFDALNERIQ 934
I GL+WLL I ++ L R Q
Sbjct: 180 IIDGLHWLLSAIGEKYEELCTRQQ 203
>ref|XP_590359.4| PREDICTED: ADP-ribosylation factor-like 13 [Bos taurus].
Length = 385
Score = 149 bits (375), Expect = 7e-36
Identities = 82/204 (40%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPED--VAPTVGFSKI 502
MF L+ +C K + R V ++++GL N+GKT + + + P +
Sbjct: 1 MFRLLTSCWCHLKTTEKTQRHVAIIIIGLHNSGKTDLVEAFRRQLPSRSRMDSCSSSEPT 60
Query: 503 DLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHP 682
L +EV+I+DL G + R IW NYYA+++G++FV+DSSD ERM+E K + +L
Sbjct: 61 TLLVDNYEVSIYDLKGDMQGRKIWPNYYAQAHGLVFVLDSSDLERMQEVKVILPNMLSDE 120
Query: 683 RISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKS 862
R++GKPIL+LANKQDK AL D+IE L LE+L+NE+K C++EPCS V ++ +
Sbjct: 121 RVAGKPILLLANKQDKMDALPPGDIIEYLLLERLMNENKSPCRVEPCSVVKELQRR-RQP 179
Query: 863 IKKGLYWLLHIIARDFDALNERIQ 934
I GL+WLL I ++ L R Q
Sbjct: 180 IIDGLHWLLSAIGEKYEELCTRQQ 203
>ref|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos taurus].
Length = 184
Score = 129 bits (325), Expect = 5e-30
Identities = 67/179 (37%), Positives = 110/179 (61%)
Frame = +2
Query: 365 KRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDL 544
K+ ++ R++ L+M+GLDNAGKT K GE + ++PT+GF+ L F++ I+D+
Sbjct: 8 KKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDV 67
Query: 545 GGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 724
GG K +R W+NY+ + G+I+VVDS+D +RM++ + + +L R++G +L+ ANKQ
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQ 127
Query: 725 DKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 901
D GAL + E L L+ + + H C I+ CSAV G +++ G+ WLL I+
Sbjct: 128 DLPGALSSNAIREALELDSIRSHHWC---IQGCSAVTG------ENLLPGIDWLLDDIS 177
>ref|NP_001033656.1| ADP-ribosylation factor-like protein 3 [Bos taurus].
Length = 182
Score = 112 bits (280), Expect = 7e-25
Identities = 57/169 (33%), Positives = 103/169 (60%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
P ++V ++++GLDNAGKT K + E + PT GF+ ++ F++ ++D+GG ++
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGA 739
IR W+NY+ + +I+V+DS+D +R EET + ++E+L ++S P+L+ ANKQD A
Sbjct: 74 IRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 740 LGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
+++ E L+L + + QI+ CSA+ G G ++ G+ W+
Sbjct: 134 APASEIAEGLNLHTIRDR---FWQIQSCSALTGEG------VQDGMNWV 173
>ref|NP_001032696.1| ADP-ribosylation factor-related protein 1 [Bos taurus].
Length = 201
Score = 109 bits (272), Expect = 6e-24
Identities = 62/179 (34%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Frame = +2
Query: 398 LVMVGLDNAGKTATA--------KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGG 553
++++GLDNAGKT K +G + TVG + + GK + +DLGG
Sbjct: 20 VLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQ 79
Query: 554 KRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKE 733
+ ++ +W YYAE +GVI+V+DS+DEER+ E+K+ +++ + G PILVLANKQD E
Sbjct: 80 EELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVE 139
Query: 734 GALGEADVIECLS-LEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARD 907
L D+ S + CL Q CSA+ G K +++G+ W++ + R+
Sbjct: 140 TCLSIPDIKTAFSDCASKIGRRDCLTQ--ACSALTG------KGVREGIEWMVKCVVRN 190
>ref|NP_001039536.1| ADP-ribosylation factor-like protein 8B [Bos taurus].
Length = 186
Score = 103 bits (258), Expect = 3e-22
Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = +2
Query: 329 MFSLMANCCGWFKR--WREPVRKVTLVMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK 499
M +L++ WF+ W+E ++ L +VGL +GKT I G++ ED+ PTVGF+
Sbjct: 1 MLALISRLLDWFRSLFWKE---EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM 57
Query: 500 IDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRH 679
+ +G + I+D+GG R + +W+ Y +++++D++D E++E ++ + +L
Sbjct: 58 RKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117
Query: 680 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQI 814
P++ G P+LVL NK+D AL E +IE ++L + + C I
Sbjct: 118 PQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSI 162
>ref|NP_001069250.1| ADP-ribosylation factor-like protein 6 [Bos taurus].
Length = 186
Score = 102 bits (254), Expect = 8e-22
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQ--GEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
++V ++ +GLDN+GKT ++ +D+ PT+GFS + T+FD+ G R
Sbjct: 16 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDMSGQGR 75
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGK--PILVLANKQDKE 733
R +W++YY E +IFV+DSSD+ RM KE + +L HP I + PIL ANK D
Sbjct: 76 YRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLR 135
Query: 734 GALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
AL V + L LE + ++ +C + A+ G G +++G+ WL
Sbjct: 136 DALTSVKVSQLLCLEDIKDKPWHICASD---AIKGEG------LQEGVDWL 177
>ref|NP_001179271.1| ADP-ribosylation factor-like protein 11 [Bos taurus].
Length = 192
Score = 99.0 bits (245), Expect = 9e-21
Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Frame = +2
Query: 398 LVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQ-GKFEVTIFDLGGGKRIRGIW 574
+VM+GLD+AGKT ++G D PTVGF+ L G+ +T++D+GG +R W
Sbjct: 15 VVMMGLDSAGKTTLLYKLKGHQLVDTLPTVGFNVEPLEAPGQACLTLWDVGGQSPLRASW 74
Query: 575 KNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEAD 754
K+Y + ++FV+DS+DE R+ E ++EVL P + G P+LVLANK + AL +
Sbjct: 75 KDYLEGTAVLVFVLDSTDEARLPEAVAELTEVLEDPHLDGVPLLVLANKHEAPHALPLPE 134
Query: 755 VIECLSLEKLVNEHKCLC-QIEPCSAVLGYG 844
+ L L++ LC Q+ CSA+ G G
Sbjct: 135 IRNRLGLQRFPG----LCWQLRACSALTGEG 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,981,005
Number of extensions: 1111526
Number of successful extensions: 4499
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 4461
Number of HSP's successfully gapped: 40
Length of query: 443
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 338
Effective length of database: 14,207,134
Effective search space: 4802011292
Effective search space used: 4802011292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002908
(1331 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545056.2| PREDICTED: similar to ADP-ribosylation factor-l... 402 e-112
Alignment gi|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-l... 129 5e-30
Alignment gi|XP_534999.2| PREDICTED: similar to ADP-ribosylation factor-l... 112 6e-25
Alignment gi|XP_853013.1| PREDICTED: similar to ADP-ribosylation factor-l... 105 1e-22
Alignment gi|XP_849898.1| PREDICTED: similar to ADP-ribosylation factor-l... 101 1e-21
Alignment gi|XP_544360.1| PREDICTED: similar to GTP-binding protein ARD-1... 100 3e-21
Alignment gi|XP_855364.1| PREDICTED: similar to ADP-ribosylation factor r... 98 2e-20
Alignment gi|XP_545258.1| PREDICTED: similar to ADP-ribosylation factor 7... 96 6e-20
Alignment gi|XP_866707.1| PREDICTED: similar to ADP-ribosylation factor-l... 96 6e-20
Alignment gi|XP_548073.2| PREDICTED: similar to ADP-ribosylation factor 4... 96 6e-20
>ref|XP_545056.2| PREDICTED: similar to ADP-ribosylation factor-like 2-like 1 isoform 1
[Canis familiaris].
Length = 443
Score = 402 bits (1034), Expect = e-112
Identities = 206/249 (82%), Positives = 211/249 (84%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR 565
RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR
Sbjct: 33 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR 92
Query: 566 GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG 745
GIWKNYYAE+YGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG
Sbjct: 93 GIWKNYYAEAYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG 152
Query: 746 EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE 925
EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFD LNE
Sbjct: 153 EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDTLNE 212
Query: 926 RIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHGTSGLAELDPEPIIVNPF 1105
RIQ+D T +G+S LAELDPEPI VNPF
Sbjct: 213 RIQRDITEQRALEEQEKRERAERVRKLREEREQREREQAELNGSSSLAELDPEPITVNPF 272
Query: 1106 QPIASVIIE 1132
QPIASVI+E
Sbjct: 273 QPIASVILE 281
>ref|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-like protein 2
isoform 1 [Canis familiaris].
Length = 184
Score = 129 bits (325), Expect = 5e-30
Identities = 67/179 (37%), Positives = 110/179 (61%)
Frame = +2
Query: 365 KRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDL 544
K+ ++ R++ L+M+GLDNAGKT K GE + ++PT+GF+ L F++ I+D+
Sbjct: 8 KKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDV 67
Query: 545 GGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 724
GG K +R W+NY+ + G+I+VVDS+D +RM++ + + +L R++G +L+ ANKQ
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 127
Query: 725 DKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 901
D GAL + E L L+ + + H C I+ CSAV G +++ G+ WLL I+
Sbjct: 128 DLPGALSSNAIREALELDSIHSHHWC---IQGCSAVTG------ENLLPGIDWLLDDIS 177
>ref|XP_534999.2| PREDICTED: similar to ADP-ribosylation factor-like 3 [Canis
familiaris].
Length = 264
Score = 112 bits (281), Expect = 6e-25
Identities = 57/169 (33%), Positives = 104/169 (61%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
P ++V ++++GLDNAGKT K + E + PT GF+ ++ F++ ++D+GG ++
Sbjct: 96 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 155
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGA 739
IR W+NY+ + +I+V+DS+D +R EET + ++E+L ++S P+L+ ANKQD A
Sbjct: 156 IRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTA 215
Query: 740 LGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
+++ E L+L + + + QI+ CSA+ G G ++ G+ W+
Sbjct: 216 APASEIAEGLNLHTIRDR---VWQIQSCSALTGEG------VQDGINWV 255
>ref|XP_853013.1| PREDICTED: similar to ADP-ribosylation factor-like 10C [Canis
familiaris].
Length = 186
Score = 105 bits (262), Expect = 1e-22
Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = +2
Query: 329 MFSLMANCCGWFKR--WREPVRKVTLVMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK 499
M +L++ WF+ W+E ++ L +VGL +GKT I G++ ED+ PTVGF+
Sbjct: 1 MLALISRLLDWFRSLFWKE---EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM 57
Query: 500 IDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRH 679
+ +G + I+D+GG R R +W+ Y +++++D++D E++E ++ + +L
Sbjct: 58 RKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117
Query: 680 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQI 814
P++ G P+LVL NK+D AL E +IE ++L + + C I
Sbjct: 118 PQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSI 162
>ref|XP_849898.1| PREDICTED: similar to ADP-ribosylation factor-like 6 [Canis
familiaris].
Length = 317
Score = 101 bits (252), Expect = 1e-21
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQ--GEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
++V ++ +GLDN+GKT ++ +D+ PT+GFS + T+FD+ G R
Sbjct: 147 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGR 206
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGK--PILVLANKQDKE 733
R +W++YY E +IFV+DSSD RM KE + +L HP I + PIL ANK D
Sbjct: 207 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 266
Query: 734 GALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
A+ V + L LE + ++ +C + A+ G G +++G+ WL
Sbjct: 267 DAVTSVKVSQLLCLENIKDKPWHICASD---AIKGEG------LQEGVDWL 308
>ref|XP_544360.1| PREDICTED: similar to GTP-binding protein ARD-1 (ADP-ribosylation
factor domain protein 1) (Tripartite motif protein 23)
[Canis familiaris].
Length = 574
Score = 100 bits (249), Expect = 3e-21
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 2/176 (1%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATA-KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGK 556
P ++ +V +GLD AGKT K Q E+ + + PT+GF+ + + TI+D+GG
Sbjct: 401 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEYKNLKFTIWDVGGKH 459
Query: 557 RIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEG 736
++R +WK+YY + V+FVVDSS +R+ E ++++L + +L+ ANKQD G
Sbjct: 460 KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 519
Query: 737 ALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL-LHIIA 901
AL ++ E LSL KL I+ C A G G + +GL WL H++A
Sbjct: 520 ALSVEEITELLSLHKLCCGRS--WYIQGCDARSGMG------LYEGLDWLSRHLVA 567
>ref|XP_855364.1| PREDICTED: similar to ADP-ribosylation factor related protein 1
[Canis familiaris].
Length = 219
Score = 97.8 bits (242), Expect = 2e-20
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 27/197 (13%)
Frame = +2
Query: 398 LVMVGLDNAGKTATA--------KGIQGEYPEDVAPTVGFSKI----------------- 502
++++GLDNAGKT K +G + TVG +
Sbjct: 20 VLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNTARGNGSPTWAVLCPLPPI 79
Query: 503 -DLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRH 679
+ GK + ++LGG + ++ +W YYAE +GVI+V+DS+DEER+ E+K +++
Sbjct: 80 RTVEVGKGPLMFWELGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKRAFEKMVTS 139
Query: 680 PRISGKPILVLANKQDKEGALGEADVIECLS-LEKLVNEHKCLCQIEPCSAVLGYGKKID 856
+ G PILVLANKQD E L D+ S + CL Q CSA+ G
Sbjct: 140 EALDGVPILVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQ--ACSALTG------ 191
Query: 857 KSIKKGLYWLLHIIARD 907
K +++G+ W++ + R+
Sbjct: 192 KGVREGIEWMVKCVVRN 208
>ref|XP_545258.1| PREDICTED: similar to ADP-ribosylation factor 7 [Canis familiaris].
Length = 192
Score = 96.3 bits (238), Expect = 6e-20
Identities = 46/154 (29%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGK-FEVTIFDLGGGKRI 562
++ ++++GLD+AGK+ ++ PT+GF+ ++ K +TI+D+GG +++
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLAKNISTLPTIGFNVEMIQLEKNLSLTIWDVGGQEKM 71
Query: 563 RGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGAL 742
R +W +Y + G+++VVDS+D++R++++ + +L++ I P+++LANKQD GAL
Sbjct: 72 RTVWDHYCENTDGLMYVVDSTDKQRLKDSSRELEHILKNEHIKNVPVVLLANKQDVPGAL 131
Query: 743 GEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYG 844
D+ ++KL ++ ++PC A+ G G
Sbjct: 132 TAEDITRMFKVKKLCSDRN--WYVQPCCAITGDG 163
>ref|XP_866707.1| PREDICTED: similar to ADP-ribosylation factor-like protein 2
isoform 2 [Canis familiaris].
Length = 157
Score = 96.3 bits (238), Expect = 6e-20
Identities = 57/179 (31%), Positives = 95/179 (53%)
Frame = +2
Query: 365 KRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDL 544
K+ ++ R++ L+M+GLDNAGKT K GE + ++PT+GF+ L F++ I+D+
Sbjct: 8 KKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDV 67
Query: 545 GGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 724
GG K +R W+NY+ + G+I+VVDS+D +RM++ + + +L
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL----------------- 110
Query: 725 DKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 901
V E L L+ + + H C I+ CSAV G +++ G+ WLL I+
Sbjct: 111 ----------VEEALELDSIHSHHWC---IQGCSAVTG------ENLLPGIDWLLDDIS 150
>ref|XP_548073.2| PREDICTED: similar to ADP-ribosylation factor 4-like [Canis
familiaris].
Length = 201
Score = 96.3 bits (238), Expect = 6e-20
Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 5/154 (3%)
Frame = +2
Query: 398 LVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQ---GKFEVT--IFDLGGGKRI 562
+V++GLD+AGKT+ ++ + PT GF+ +R G +T ++D+GG +++
Sbjct: 24 VVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKL 83
Query: 563 RGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGAL 742
R +W++Y + G++FVVD+++ ER+EE K + + R G P+LVLANKQD+ GAL
Sbjct: 84 RPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGAL 143
Query: 743 GEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYG 844
A+V + L++ +L L ++ CSAV G G
Sbjct: 144 SAAEVEKRLAVRELA--AATLTHVQGCSAVDGLG 175
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,179,011
Number of extensions: 1155067
Number of successful extensions: 4641
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4604
Number of HSP's successfully gapped: 36
Length of query: 443
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 337
Effective length of database: 15,340,888
Effective search space: 5169879256
Effective search space used: 5169879256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002908
(1331 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001167621.1| ADP-ribosylation factor-like protein 13B iso... 434 e-122
Alignment gi|NP_878899.1| ADP-ribosylation factor-like protein 13B isofor... 434 e-122
Alignment gi|NP_001167622.1| ADP-ribosylation factor-like protein 13B iso... 230 2e-60
Alignment gi|NP_659433.2| ADP-ribosylation factor-like protein 13B isofor... 187 2e-47
Alignment gi|NP_001155963.1| ADP-ribosylation factor-like protein 13A iso... 162 7e-40
Alignment gi|NP_001155962.1| ADP-ribosylation factor-like protein 13A iso... 162 7e-40
Alignment gi|NP_001013008.2| ADP-ribosylation factor-like protein 13A iso... 162 7e-40
Alignment gi|NP_001658.2| ADP-ribosylation factor-like protein 2 isoform ... 129 6e-30
Alignment gi|NP_004302.1| ADP-ribosylation factor-like protein 3 [Homo sa... 114 3e-25
Alignment gi|NP_620150.1| ADP-ribosylation factor-like protein 8A [Homo s... 109 5e-24
>ref|NP_001167621.1| ADP-ribosylation factor-like protein 13B isoform 1 [Homo sapiens].
Length = 428
Score = 434 bits (1116), Expect = e-122
Identities = 220/268 (82%), Positives = 227/268 (84%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MFSLMA+CCGWFKRWREPVRKVTL+MVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKI+L
Sbjct: 1 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
RQGKFEVTIFDLGGG RIRGIWKNYYAESYGVIFVVDSSDEERMEETKE MSE+LRHPRI
Sbjct: 61 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSA+ GYGKKIDKSIK
Sbjct: 121 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK 180
Query: 869 KGLYWLLHIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH 1048
KGLYWLLH+IARDFDALNERIQK+TT
Sbjct: 181 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL 240
Query: 1049 HGTSGLAELDPEPIIVNPFQPIASVIIE 1132
GTSGLAELDPEP NPFQPIASVIIE
Sbjct: 241 DGTSGLAELDPEP--TNPFQPIASVIIE 266
>ref|NP_878899.1| ADP-ribosylation factor-like protein 13B isoform 1 [Homo sapiens].
Length = 428
Score = 434 bits (1116), Expect = e-122
Identities = 220/268 (82%), Positives = 227/268 (84%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MFSLMA+CCGWFKRWREPVRKVTL+MVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKI+L
Sbjct: 1 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
RQGKFEVTIFDLGGG RIRGIWKNYYAESYGVIFVVDSSDEERMEETKE MSE+LRHPRI
Sbjct: 61 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSA+ GYGKKIDKSIK
Sbjct: 121 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK 180
Query: 869 KGLYWLLHIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH 1048
KGLYWLLH+IARDFDALNERIQK+TT
Sbjct: 181 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL 240
Query: 1049 HGTSGLAELDPEPIIVNPFQPIASVIIE 1132
GTSGLAELDPEP NPFQPIASVIIE
Sbjct: 241 DGTSGLAELDPEP--TNPFQPIASVIIE 266
>ref|NP_001167622.1| ADP-ribosylation factor-like protein 13B isoform 3 [Homo sapiens].
Length = 325
Score = 230 bits (587), Expect = 2e-60
Identities = 121/165 (73%), Positives = 125/165 (75%)
Frame = +2
Query: 638 MEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIE 817
MEETKE MSE+LRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIE
Sbjct: 1 MEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIE 60
Query: 818 PCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXX 997
PCSA+ GYGKKIDKSIKKGLYWLLH+IARDFDALNERIQK+TT
Sbjct: 61 PCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERV 120
Query: 998 XXXXXXXXXXXXXXXXHHGTSGLAELDPEPIIVNPFQPIASVIIE 1132
GTSGLAELDPEP NPFQPIASVIIE
Sbjct: 121 RKLREERKQNEQEQAELDGTSGLAELDPEP--TNPFQPIASVIIE 163
>ref|NP_659433.2| ADP-ribosylation factor-like protein 13B isoform 2 [Homo sapiens].
Length = 321
Score = 187 bits (475), Expect = 2e-47
Identities = 99/141 (70%), Positives = 102/141 (72%)
Frame = +2
Query: 710 LANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLL 889
LANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSA+ GYGKKIDKSIKKGLYWLL
Sbjct: 21 LANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLL 80
Query: 890 HIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHGTSGLA 1069
H+IARDFDALNERIQK+TT GTSGLA
Sbjct: 81 HVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLA 140
Query: 1070 ELDPEPIIVNPFQPIASVIIE 1132
ELDPEP NPFQPIASVIIE
Sbjct: 141 ELDPEP--TNPFQPIASVIIE 159
Score = 49.7 bits (117), Expect = 6e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVR 388
MFSLMA+CCGWFKRWREPVR
Sbjct: 1 MFSLMASCCGWFKRWREPVR 20
>ref|NP_001155963.1| ADP-ribosylation factor-like protein 13A isoform b [Homo sapiens].
Length = 256
Score = 162 bits (410), Expect = 7e-40
Identities = 79/190 (41%), Positives = 122/190 (64%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MF L+++CC + E R VT+ ++GL+N+GKT + Q P + L
Sbjct: 1 MFRLLSSCCSCLRTTEETRRNVTIPIIGLNNSGKTVLVEAFQKLLPSKTDHCMKSELTTL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
++E++I+DL G + R W NYYA+++G++FV+DSSD RM+E K ++ +L R+
Sbjct: 61 LLDEYELSIYDLNGDLKGREAWPNYYAQAHGLVFVLDSSDIRRMQEVKIILTHLLSDKRV 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
+GKPIL+LANKQDK+ AL D+I+ L L+KLV E+KC C++EPCSA+ ++ + I
Sbjct: 121 AGKPILILANKQDKKKALMPCDIIDYLLLKKLVKENKCPCRVEPCSAIRNLERRNHQPIV 180
Query: 869 KGLYWLLHII 898
+GL WLL +I
Sbjct: 181 EGLRWLLAVI 190
>ref|NP_001155962.1| ADP-ribosylation factor-like protein 13A isoform a [Homo sapiens].
Length = 290
Score = 162 bits (410), Expect = 7e-40
Identities = 79/190 (41%), Positives = 122/190 (64%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MF L+++CC + E R VT+ ++GL+N+GKT + Q P + L
Sbjct: 1 MFRLLSSCCSCLRTTEETRRNVTIPIIGLNNSGKTVLVEAFQKLLPSKTDHCMKSELTTL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
++E++I+DL G + R W NYYA+++G++FV+DSSD RM+E K ++ +L R+
Sbjct: 61 LLDEYELSIYDLNGDLKGREAWPNYYAQAHGLVFVLDSSDIRRMQEVKIILTHLLSDKRV 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
+GKPIL+LANKQDK+ AL D+I+ L L+KLV E+KC C++EPCSA+ ++ + I
Sbjct: 121 AGKPILILANKQDKKKALMPCDIIDYLLLKKLVKENKCPCRVEPCSAIRNLERRNHQPIV 180
Query: 869 KGLYWLLHII 898
+GL WLL +I
Sbjct: 181 EGLRWLLAVI 190
>ref|NP_001013008.2| ADP-ribosylation factor-like protein 13A isoform a [Homo sapiens].
Length = 290
Score = 162 bits (410), Expect = 7e-40
Identities = 79/190 (41%), Positives = 122/190 (64%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MF L+++CC + E R VT+ ++GL+N+GKT + Q P + L
Sbjct: 1 MFRLLSSCCSCLRTTEETRRNVTIPIIGLNNSGKTVLVEAFQKLLPSKTDHCMKSELTTL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
++E++I+DL G + R W NYYA+++G++FV+DSSD RM+E K ++ +L R+
Sbjct: 61 LLDEYELSIYDLNGDLKGREAWPNYYAQAHGLVFVLDSSDIRRMQEVKIILTHLLSDKRV 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
+GKPIL+LANKQDK+ AL D+I+ L L+KLV E+KC C++EPCSA+ ++ + I
Sbjct: 121 AGKPILILANKQDKKKALMPCDIIDYLLLKKLVKENKCPCRVEPCSAIRNLERRNHQPIV 180
Query: 869 KGLYWLLHII 898
+GL WLL +I
Sbjct: 181 EGLRWLLAVI 190
>ref|NP_001658.2| ADP-ribosylation factor-like protein 2 isoform 1 [Homo sapiens].
Length = 184
Score = 129 bits (324), Expect = 6e-30
Identities = 67/179 (37%), Positives = 110/179 (61%)
Frame = +2
Query: 365 KRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDL 544
K+ ++ R++ L+M+GLDNAGKT K GE + ++PT+GF+ L F++ I+D+
Sbjct: 8 KKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDV 67
Query: 545 GGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 724
GG K +R W+NY+ + G+I+VVDS+D +RM++ + + +L R++G +L+ ANKQ
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 127
Query: 725 DKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 901
D GAL + E L L+ + + H C I+ CSAV G +++ G+ WLL I+
Sbjct: 128 DLPGALSSNAIREVLELDSIRSHHWC---IQGCSAVTG------ENLLPGIDWLLDDIS 177
>ref|NP_004302.1| ADP-ribosylation factor-like protein 3 [Homo sapiens].
Length = 182
Score = 114 bits (284), Expect = 3e-25
Identities = 58/169 (34%), Positives = 104/169 (61%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
P ++V ++++GLDNAGKT K + E + PT GF+ ++ F++ ++D+GG ++
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGA 739
IR WKNY+ + +I+V+DS+D +R EET + ++E+L ++S P+L+ ANKQD A
Sbjct: 74 IRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 740 LGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
+++ E L+L + + + QI+ CSA+ G G ++ G+ W+
Sbjct: 134 APASEIAEGLNLHTIRDR---VWQIQSCSALTGEG------VQDGMNWV 173
>ref|NP_620150.1| ADP-ribosylation factor-like protein 8A [Homo sapiens].
Length = 186
Score = 109 bits (273), Expect = 5e-24
Identities = 56/165 (33%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Frame = +2
Query: 329 MFSLMANCCGWFKR--WREPVRKVTLVMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK 499
M +L WFK W+E ++ L +VGL +GKT I G++ ED+ PTVGF+
Sbjct: 1 MIALFNKLLDWFKALFWKE---EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 57
Query: 500 IDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRH 679
+ +G + ++D+GG R R +W+ Y ++++VD++D+E++E +K + +L
Sbjct: 58 RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 117
Query: 680 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQI 814
P++ G P+LVL NK+D GAL E ++IE ++L + + C I
Sbjct: 118 PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSI 162
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,232,319
Number of extensions: 1132701
Number of successful extensions: 4424
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 4380
Number of HSP's successfully gapped: 50
Length of query: 443
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 337
Effective length of database: 14,802,980
Effective search space: 4988604260
Effective search space used: 4988604260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002908
(1331 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080853.3| ADP-ribosylation factor-like protein 13B [Mus m... 432 e-121
Alignment gi|NP_083223.1| ADP-ribosylation factor-like protein 13A [Mus m... 157 2e-38
Alignment gi|NP_062696.2| ADP-ribosylation factor-like protein 2 [Mus mus... 125 7e-29
Alignment gi|NP_062692.1| ADP-ribosylation factor-like protein 3 [Mus mus... 110 2e-24
Alignment gi|NP_001159464.1| ADP-ribosylation factor-related protein 1 is... 110 2e-24
Alignment gi|NP_001159463.1| ADP-ribosylation factor-related protein 1 is... 110 2e-24
Alignment gi|NP_083978.3| ADP-ribosylation factor-related protein 1 isofo... 110 2e-24
Alignment gi|NP_081099.1| ADP-ribosylation factor-like protein 8A [Mus mu... 109 4e-24
Alignment gi|NP_080287.1| ADP-ribosylation factor-like protein 8B [Mus mu... 105 8e-23
Alignment gi|NP_796311.2| ADP-ribosylation factor-like protein 11 [Mus mu... 104 2e-22
>ref|NP_080853.3| ADP-ribosylation factor-like protein 13B [Mus musculus].
Length = 427
Score = 432 bits (1111), Expect = e-121
Identities = 220/268 (82%), Positives = 228/268 (85%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MFSLMANCC FKRWREPVRKVTLVMVGLDNAGKTATAKGIQGE+PEDVAPTVGFSKIDL
Sbjct: 1 MFSLMANCCNLFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
RQGKF+VTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI
Sbjct: 61 RQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK
Sbjct: 121 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 180
Query: 869 KGLYWLLHIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH 1048
KGLYWLLHIIA+DFDAL+ERIQKDTT
Sbjct: 181 KGLYWLLHIIAKDFDALSERIQKDTTEQRALEEQEKRERAERVRKLREEREREQTEL--- 237
Query: 1049 HGTSGLAELDPEPIIVNPFQPIASVIIE 1132
GTSGLAE+D P++ NPFQPIA+VIIE
Sbjct: 238 DGTSGLAEIDSGPVLANPFQPIAAVIIE 265
>ref|NP_083223.1| ADP-ribosylation factor-like protein 13A [Mus musculus].
Length = 372
Score = 157 bits (396), Expect = 2e-38
Identities = 83/202 (41%), Positives = 123/202 (60%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MF L+ C K E R VT++++GLDN+GK+ + Q P + + ++ L
Sbjct: 1 MFRLLTACWSRQKTTEEKQRNVTIIVIGLDNSGKSRLIEAFQRLIPSKMHKEMRPTQTTL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
++V+I+DL G + R W +YYA+++G+IFVVDSSD R++E K ++ ++ R+
Sbjct: 61 LLDDYQVSIYDLTGDVKGREKWSSYYAQAHGLIFVVDSSDIARIQEVKIILTRIMFDKRV 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
SGKPIL+LANKQDK+ AL D+IE L LE+LVNE + +C++EPCS + K+ K I
Sbjct: 121 SGKPILILANKQDKKNALLPCDIIEYLLLERLVNETRSMCRVEPCSTIKRIPKRQQKPIV 180
Query: 869 KGLYWLLHIIARDFDALNERIQ 934
GL WLL I + L R Q
Sbjct: 181 VGLRWLLAAIGDQYSELYTRQQ 202
>ref|NP_062696.2| ADP-ribosylation factor-like protein 2 [Mus musculus].
Length = 184
Score = 125 bits (314), Expect = 7e-29
Identities = 66/179 (36%), Positives = 109/179 (60%)
Frame = +2
Query: 365 KRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDL 544
K+ ++ R++ L+M+GLDNAGKT K GE + ++PT+GF+ L F++ I+D+
Sbjct: 8 KKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDV 67
Query: 545 GGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 724
GG K +R W+NY+ + G+I+VVDS+D +RM++ + + +L R++G +L+ ANKQ
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 127
Query: 725 DKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 901
D GAL + E L L+ + + H +I+ CSAV G + + G+ WLL I+
Sbjct: 128 DLPGALSCNAIQEALELDSIRSHH---WRIQGCSAVTG------EDLLPGIDWLLDDIS 177
>ref|NP_062692.1| ADP-ribosylation factor-like protein 3 [Mus musculus].
Length = 182
Score = 110 bits (276), Expect = 2e-24
Identities = 56/169 (33%), Positives = 104/169 (61%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
P ++V ++++GLDNAGKT K + E + PT GF+ ++ F++ ++D+GG ++
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGA 739
IR W++Y+ + +I+V+DS+D +R EET + ++E+L ++S P+L+ ANKQD A
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 740 LGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
+++ E L+L + + + QI+ CSA+ G G ++ G+ W+
Sbjct: 134 APASEIAEGLNLHTIRDR---VWQIQSCSALTGEG------VQDGMNWV 173
>ref|NP_001159464.1| ADP-ribosylation factor-related protein 1 isoform 1 [Mus musculus].
Length = 201
Score = 110 bits (276), Expect = 2e-24
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Frame = +2
Query: 398 LVMVGLDNAGKTATA--------KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGG 553
++++GLDNAGKT K +G + TVG + + GK + +DLGG
Sbjct: 20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQ 79
Query: 554 KRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKE 733
+ ++ +W YYAE +GVI+V+DS+DEER+ E+KE +V+ + G PILVLANKQD E
Sbjct: 80 EELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVE 139
Query: 734 GALGEADVIECLS-LEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARD 907
L D+ S + CL Q CSA+ G K +++G+ W++ + R+
Sbjct: 140 TCLSIPDIKTAFSDCTCKIGRRDCLTQ--ACSALTG------KGVREGIEWMVKCVVRN 190
>ref|NP_001159463.1| ADP-ribosylation factor-related protein 1 isoform 1 [Mus musculus].
Length = 201
Score = 110 bits (276), Expect = 2e-24
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Frame = +2
Query: 398 LVMVGLDNAGKTATA--------KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGG 553
++++GLDNAGKT K +G + TVG + + GK + +DLGG
Sbjct: 20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQ 79
Query: 554 KRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKE 733
+ ++ +W YYAE +GVI+V+DS+DEER+ E+KE +V+ + G PILVLANKQD E
Sbjct: 80 EELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVE 139
Query: 734 GALGEADVIECLS-LEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARD 907
L D+ S + CL Q CSA+ G K +++G+ W++ + R+
Sbjct: 140 TCLSIPDIKTAFSDCTCKIGRRDCLTQ--ACSALTG------KGVREGIEWMVKCVVRN 190
>ref|NP_083978.3| ADP-ribosylation factor-related protein 1 isoform 1 [Mus musculus].
Length = 201
Score = 110 bits (276), Expect = 2e-24
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Frame = +2
Query: 398 LVMVGLDNAGKTATA--------KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGG 553
++++GLDNAGKT K +G + TVG + + GK + +DLGG
Sbjct: 20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQ 79
Query: 554 KRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKE 733
+ ++ +W YYAE +GVI+V+DS+DEER+ E+KE +V+ + G PILVLANKQD E
Sbjct: 80 EELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVE 139
Query: 734 GALGEADVIECLS-LEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARD 907
L D+ S + CL Q CSA+ G K +++G+ W++ + R+
Sbjct: 140 TCLSIPDIKTAFSDCTCKIGRRDCLTQ--ACSALTG------KGVREGIEWMVKCVVRN 190
>ref|NP_081099.1| ADP-ribosylation factor-like protein 8A [Mus musculus].
Length = 186
Score = 109 bits (273), Expect = 4e-24
Identities = 56/165 (33%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Frame = +2
Query: 329 MFSLMANCCGWFKR--WREPVRKVTLVMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK 499
M +L WFK W+E ++ L +VGL +GKT I G++ ED+ PTVGF+
Sbjct: 1 MIALFNKLLDWFKALFWKE---EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 57
Query: 500 IDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRH 679
+ +G + ++D+GG R R +W+ Y ++++VD++D+E++E +K + +L
Sbjct: 58 RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 117
Query: 680 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQI 814
P++ G P+LVL NK+D GAL E ++IE ++L + + C I
Sbjct: 118 PQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSI 162
>ref|NP_080287.1| ADP-ribosylation factor-like protein 8B [Mus musculus].
Length = 186
Score = 105 bits (262), Expect = 8e-23
Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = +2
Query: 329 MFSLMANCCGWFKR--WREPVRKVTLVMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK 499
M +L++ WF+ W+E ++ L +VGL +GKT I G++ ED+ PTVGF+
Sbjct: 1 MLALISRLLDWFRSLFWKE---EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM 57
Query: 500 IDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRH 679
+ +G + I+D+GG R R +W+ Y +++++D++D E++E ++ + +L
Sbjct: 58 RKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117
Query: 680 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQI 814
P++ G P+LVL NK+D AL E +IE ++L + + C I
Sbjct: 118 PQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSI 162
>ref|NP_796311.2| ADP-ribosylation factor-like protein 11 [Mus musculus].
Length = 176
Score = 104 bits (259), Expect = 2e-22
Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Frame = +2
Query: 398 LVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQ-GKFEVTIFDLGGGKRIRGIW 574
+VM+GLD+AGKT ++G D PTVGF+ L G +T++D+GG ++R W
Sbjct: 15 VVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATW 74
Query: 575 KNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEAD 754
K+Y +++V+DS+DE R+ E + EVL P ++G P LVLANKQ+ GAL +
Sbjct: 75 KDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLE 134
Query: 755 VIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHII 898
+ L LE K ++ CSA+ G G +++ L LLH++
Sbjct: 135 IRNRLGLEGF---QKHCWELRACSALTGQG------LQEALQSLLHLL 173
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,181,103
Number of extensions: 946630
Number of successful extensions: 3514
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3477
Number of HSP's successfully gapped: 36
Length of query: 443
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 339
Effective length of database: 12,493,815
Effective search space: 4235403285
Effective search space used: 4235403285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002908
(1331 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361063.1| PREDICTED: ADP-ribosylation factor-like prot... 421 0.0
Alignment gi|XP_003358923.1| PREDICTED: ADP-ribosylation factor-like prot... 209 3e-54
Alignment gi|XP_003135288.1| PREDICTED: ADP-ribosylation factor-like prot... 161 9e-40
Alignment gi|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like prot... 130 2e-30
Alignment gi|NP_001026955.1| ADP-ribosylation factor-like protein 3 [Sus ... 112 4e-25
Alignment gi|XP_003358917.1| PREDICTED: ADP-ribosylation factor-like prot... 101 8e-22
Alignment gi|XP_003132562.1| PREDICTED: ADP-ribosylation factor-like prot... 100 2e-21
Alignment gi|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 99 4e-21
Alignment gi|XP_003134061.2| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 99 4e-21
Alignment gi|XP_003359839.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 98 1e-20
>ref|XP_003361063.1| PREDICTED: ADP-ribosylation factor-like protein 13B-like, partial
[Sus scrofa].
Length = 503
Score = 421 bits (1081), Expect(2) = 0.0
Identities = 215/249 (86%), Positives = 216/249 (86%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR 565
R+VTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR
Sbjct: 118 RQVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIR 177
Query: 566 GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG 745
GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG
Sbjct: 178 GIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALG 237
Query: 746 EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE 925
EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE
Sbjct: 238 EADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNE 297
Query: 926 RIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHGTSGLAELDPEPIIVNPF 1105
RIQKDTT HHGTSGLAELDPEPIIVNPF
Sbjct: 298 RIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPF 357
Query: 1106 QPIASVIIE 1132
QPIASVIIE
Sbjct: 358 QPIASVIIE 366
Score = 252 bits (644), Expect(2) = 0.0
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +1
Query: 31 MRGFSLALCVHPCWVLCNCVFGPSVPKRGAQSRSARWSAVVIGCGARTDRPHLPLGLSSG 210
MRGFSLALCVHPCWVLCNCVFGPSVPKRGAQSRSARWSAVVIGCGARTDRPHLPLGLSSG
Sbjct: 1 MRGFSLALCVHPCWVLCNCVFGPSVPKRGAQSRSARWSAVVIGCGARTDRPHLPLGLSSG 60
Query: 211 PIRLRGASEWQRPPRLGLRLGGVHSRSGLGWEALGGTAWDVQSNGQLLRLVQAVAGARQ 387
PIRLRGASEWQRPPRLGLRLGGVHSRSGLGWEALGGTAWDVQSNGQLLRLVQAVAGARQ
Sbjct: 61 PIRLRGASEWQRPPRLGLRLGGVHSRSGLGWEALGGTAWDVQSNGQLLRLVQAVAGARQ 119
>ref|XP_003358923.1| PREDICTED: ADP-ribosylation factor-like protein 13B-like [Sus
scrofa].
Length = 363
Score = 209 bits (532), Expect = 3e-54
Identities = 108/141 (76%), Positives = 108/141 (76%)
Frame = +2
Query: 710 LANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLL 889
LANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLL
Sbjct: 21 LANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLL 80
Query: 890 HIIARDFDALNERIQKDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHGTSGLA 1069
HIIARDFDALNERIQKDTT HHGTSGLA
Sbjct: 81 HIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLA 140
Query: 1070 ELDPEPIIVNPFQPIASVIIE 1132
ELDPEPIIVNPFQPIASVIIE
Sbjct: 141 ELDPEPIIVNPFQPIASVIIE 161
>ref|XP_003135288.1| PREDICTED: ADP-ribosylation factor-like protein 13A-like [Sus
scrofa].
Length = 353
Score = 161 bits (407), Expect = 9e-40
Identities = 81/195 (41%), Positives = 121/195 (62%)
Frame = +2
Query: 329 MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDL 508
MF L+ +CC K E R VT++++GLDN+GKT + Q + + L
Sbjct: 1 MFRLLISCCSHLKATEERRRNVTIIIIGLDNSGKTVLVEAFQRLLRSRIDSHMKSELTTL 60
Query: 509 RQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 688
++V+I+DL G + R W NYYA+++G++FV+DSSD ERM+E K + +L R+
Sbjct: 61 LLDDYKVSIYDLNGDTKGRETWPNYYAQAHGLVFVLDSSDFERMQEVKVIFTRLLSDKRV 120
Query: 689 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIK 868
+GKPIL+LANKQDK+ AL D+IE L LE+L+NE K C++EPCSA+ ++ + I
Sbjct: 121 AGKPILLLANKQDKKDALLPFDIIEYLLLERLMNEKKSWCRLEPCSAIKNLQRRSHQPII 180
Query: 869 KGLYWLLHIIARDFD 913
+GL WLL I ++
Sbjct: 181 EGLRWLLSAIGNKYE 195
>ref|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Sus
scrofa].
Length = 184
Score = 130 bits (326), Expect = 2e-30
Identities = 67/179 (37%), Positives = 110/179 (61%)
Frame = +2
Query: 365 KRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDL 544
K+ ++ R++ L+M+GLDNAGKT K GE + ++PT+GF+ L F++ I+D+
Sbjct: 8 KKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDV 67
Query: 545 GGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQ 724
GG K +R W+NY+ + G+I+VVDS+D +RM++ + + +L R++G +L+ ANKQ
Sbjct: 68 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 127
Query: 725 DKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 901
D GAL + E L L+ + + H C I+ CSAV G +++ G+ WLL I+
Sbjct: 128 DLPGALSSKAIREALELDSIRSHHWC---IQGCSAVTG------ENLLPGIDWLLDDIS 177
>ref|NP_001026955.1| ADP-ribosylation factor-like protein 3 [Sus scrofa].
Length = 182
Score = 112 bits (281), Expect = 4e-25
Identities = 57/169 (33%), Positives = 104/169 (61%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
P ++V ++++GLDNAGKT K + E + PT GF+ ++ F++ ++D+GG ++
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGA 739
IR W+NY+ + +I+V+DS+D +R EET + ++E+L ++S P+L+ ANKQD A
Sbjct: 74 IRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 740 LGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
+++ E L+L + + + QI+ CSA+ G G ++ G+ W+
Sbjct: 134 APASEIAEGLNLHTIRDR---VWQIQSCSALTGEG------VQDGMNWV 173
>ref|XP_003358917.1| PREDICTED: ADP-ribosylation factor-like protein 6-like [Sus
scrofa].
Length = 186
Score = 101 bits (252), Expect = 8e-22
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQ--GEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKR 559
++V ++ +GLDN+GKT ++ +D+ PT+GFS + T+FD+ G R
Sbjct: 16 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGR 75
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGK--PILVLANKQDKE 733
R +W++YY E +IFV+DSSD RM KE + +L HP I + PIL ANK D
Sbjct: 76 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 135
Query: 734 GALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
A+ V + L LE + ++ +C + A+ G G +++G+ WL
Sbjct: 136 DAVTSVKVSQLLCLENIKDKPWHICASD---AIKGEG------LQEGVDWL 177
>ref|XP_003132562.1| PREDICTED: ADP-ribosylation factor-like protein 14-like [Sus
scrofa].
Length = 192
Score = 100 bits (249), Expect = 2e-21
Identities = 47/155 (30%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = +2
Query: 386 RKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFS--KIDLRQGKFEVTIFDLGGGKR 559
++ ++++GLD+AGK+ ++ + PT+GF+ ++L +G ++T++D+GG ++
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLAKDIETTPTIGFNVEMMELEKG-LQLTVWDVGGQEK 70
Query: 560 IRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGA 739
+R +W Y + G+++VVDSSD +R+E+++ +L++ I P+++LANKQD GA
Sbjct: 71 MRTVWSLYCENTDGLVYVVDSSDTQRLEDSRREFEHILKNEHIKNVPVILLANKQDVPGA 130
Query: 740 LGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYG 844
+ ++ ++KL ++ ++PC AV G G
Sbjct: 131 MNAEEITRMFKVKKLCSDRN--WYVQPCCAVTGDG 163
>ref|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like [Sus scrofa].
Length = 232
Score = 99.4 bits (246), Expect = 4e-21
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATA-KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGK 556
P ++ +V +GLD AGKT K Q E+ + + PT+GF+ + + TI+D+GG
Sbjct: 59 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEYKNLKFTIWDVGGKH 117
Query: 557 RIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEG 736
++R +WK+YY + V+FVVDSS +R+ E ++++L + +L+ ANKQD G
Sbjct: 118 KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 177
Query: 737 ALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
AL ++ E LSL KL I+ C A G G + +GL WL
Sbjct: 178 ALSVEEITELLSLHKLCCGRS--WYIQGCDARSGMG------LYEGLDWL 219
>ref|XP_003134061.2| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like isoform 1 [Sus
scrofa].
Length = 574
Score = 99.4 bits (246), Expect = 4e-21
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATA-KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGK 556
P ++ +V +GLD AGKT K Q E+ + + PT+GF+ + + TI+D+GG
Sbjct: 401 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEYKNLKFTIWDVGGKH 459
Query: 557 RIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEG 736
++R +WK+YY + V+FVVDSS +R+ E ++++L + +L+ ANKQD G
Sbjct: 460 KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 519
Query: 737 ALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWL 886
AL ++ E LSL KL I+ C A G G + +GL WL
Sbjct: 520 ALSVEEITELLSLHKLCCGRS--WYIQGCDARSGMG------LYEGLDWL 561
>ref|XP_003359839.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like isoform 3 [Sus
scrofa].
Length = 568
Score = 97.8 bits (242), Expect = 1e-20
Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Frame = +2
Query: 380 PVRKVTLVMVGLDNAGKTATA-KGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGK 556
P ++ +V +GLD AGKT K Q E+ + + PT+GF+ + + TI+D+GG
Sbjct: 401 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEYKNLKFTIWDVGGKH 459
Query: 557 RIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEG 736
++R +WK+YY + V+FVVDSS +R+ E ++++L + +L+ ANKQD G
Sbjct: 460 KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 519
Query: 737 ALGEADVIECLSLEKLVNEHKC 802
AL ++ E LSL KL C
Sbjct: 520 ALSVEEITELLSLHKLCCGRSC 541
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,971,513
Number of extensions: 715500
Number of successful extensions: 3003
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 2967
Number of HSP's successfully gapped: 44
Length of query: 443
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 341
Effective length of database: 8,804,438
Effective search space: 3002313358
Effective search space used: 3002313358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002908
(1331 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893394.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 726 0.0
Sscrofa_Chr13 482 e-133
>gb|GL893394.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2163
Length = 92414
Score = 726 bits (366), Expect = 0.0
Identities = 366/366 (100%)
Strand = Plus / Minus
Query: 22 agcacgtcgatgcggggattttcgctggctctgtgcgtccatccttgctgggttctgtgt 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72953 agcacgtcgatgcggggattttcgctggctctgtgcgtccatccttgctgggttctgtgt 72894
Query: 82 aactgcgtctttggcccgtctgttcctaaacgaggagcgcagtcgcggtcagctcgctgg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72893 aactgcgtctttggcccgtctgttcctaaacgaggagcgcagtcgcggtcagctcgctgg 72834
Query: 142 tcggccgtggttattgggtgtggtgctcggactgaccgtcctcacctccctctcggcctc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72833 tcggccgtggttattgggtgtggtgctcggactgaccgtcctcacctccctctcggcctc 72774
Query: 202 tcctctggacccatccgtcttaggggagcctcggagtggcagcggcccccaagactcggc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72773 tcctctggacccatccgtcttaggggagcctcggagtggcagcggcccccaagactcggc 72714
Query: 262 ctgagactaggaggggtccattctcgctccgggctcggatgggaggcgttgggaggaacg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72713 ctgagactaggaggggtccattctcgctccgggctcggatgggaggcgttgggaggaacg 72654
Query: 322 gcctgggatgttcagtctaatggccaactgctgcggctggttcaagcggtggcgggagcc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653 gcctgggatgttcagtctaatggccaactgctgcggctggttcaagcggtggcgggagcc 72594
Query: 382 cgtcag 387
||||||
Sbjct: 72593 cgtcag 72588
Score = 504 bits (254), Expect = e-140
Identities = 254/254 (100%)
Strand = Plus / Minus
Query: 457 agagtatcctgaagatgtagctcctactgttggattttccaaaattgaccttagacaagg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47069 agagtatcctgaagatgtagctcctactgttggattttccaaaattgaccttagacaagg 47010
Query: 517 aaagtttgaagtcaccatctttgacttgggaggtggaaaaagaattcggggaatctggaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47009 aaagtttgaagtcaccatctttgacttgggaggtggaaaaagaattcggggaatctggaa 46950
Query: 577 gaattactatgctgagtcctatggggtaatatttgttgtggattccagtgatgaagagag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46949 gaattactatgctgagtcctatggggtaatatttgttgtggattccagtgatgaagagag 46890
Query: 637 aatggaagagacaaaagaaacaatgtcagaagtgctaagacaccctaggatatcaggaaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46889 aatggaagagacaaaagaaacaatgtcagaagtgctaagacaccctaggatatcaggaaa 46830
Query: 697 gcctatattggtgt 710
||||||||||||||
Sbjct: 46829 gcctatattggtgt 46816
Score = 482 bits (243), Expect = e-133
Identities = 297/316 (93%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 1016 agagaacaaagagagcaagagcaggctgaacaccatggaaccagtggtctggcagagttg 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14677 agagaacaaagagagcaagagcaggctgaacaccatggaaccagtggtctggcagagttg 14618
Query: 1076 gacccagaaccaattattgttaatcctttccagccaatagcatctgtaatcattgaggta 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14617 gacccagaaccaattattgttaatcctttccagccaatagcatctgtaatcattgaggta 14558
Query: 1136 tggatggtggcaaatgtaatttttatatcttgagttataaagtctgaagttgagaaagaa 1195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 14557 tggatggtggcaaatgtaatttttatatcttgagttataaagtcggaagttgagaaagaa 14498
Query: 1196 agcagggagttgggataggaggcctggaggtagaagtatttcaccaaaagtttattattt 1255
|||||||||||||| ||||||| |||||||||||||||||||||| | |||||||||||
Sbjct: 14497 ggcagggagttgggaaaggaggcatggaggtagaagtatttcaccagaggtttattattt 14438
Query: 1256 gtgaaagaaatttattggcgaagaaaggttaaaagtttgctcnnnnnnnncttgcttgtc 1315
|||||||||||| | ||| ||||||||||||||||||||| ||||||||||
Sbjct: 14437 gtgaaagaaattaagtgggagagaaaggttaaaagtttgctc--ttttttcttgcttgtc 14380
Query: 1316 aaatttatcttttgat 1331
||||||||||||||||
Sbjct: 14379 aaatttatcttttgat 14364
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 815 gaaccttgttcagcagtcttgggatatggaaagaaaattgataagtccattaaaaaaggc 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18026 gaaccttgttcagcagtcttgggatatggaaagaaaattgataagtccattaaaaaaggc 17967
Query: 875 ctttattggctgctacatattattgcaagagactttgatgccttaaatgaacgcatccaa 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17966 ctttattggctgctacatattattgcaagagactttgatgccttaaatgaacgcatccaa 17907
Query: 935 aaagacacaacagaacaacgtgctcttgaggaacaagagaaacgagaaagggcagaacga 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17906 aaagacacaacagaacaacgtgctcttgaggaacaagagaaacgagaaagggcagaacga 17847
Query: 995 gtacgaaaattacgcgaggaaag 1017
|||||||||||||||||||||||
Sbjct: 17846 gtacgaaaattacgcgaggaaag 17824
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 709 gttggcaaataaacaagataaggaaggggctttaggagaagctgatgtgattgaatgtct 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19033 gttggcaaataaacaagataaggaaggggctttaggagaagctgatgtgattgaatgtct 18974
Query: 769 ctctctggaaaaactggtcaatgagcacaagtgcctatgtcaaatag 815
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18973 ctctctggaaaaactggtcaatgagcacaagtgcctatgtcaaatag 18927
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 386 agaaaggtgactcttgtgatggtgggacttgataatgctggtaaaacggcaacagcaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55191 agaaaggtgactcttgtgatggtgggacttgataatgctggtaaaacggcaacagcaaag 55132
Query: 446 ggaatccaaggag 458
|||||||||||||
Sbjct: 55131 ggaatccaaggag 55119
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 604 aatatttgttgtggattccagtgatgaagagagaatggaaga 645
||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 48321 aatatttgttgtggattccagcaatgaagaaagaatggaaga 48280
>Sscrofa_Chr13
|| Length = 218635234
Score = 482 bits (243), Expect = e-133
Identities = 297/316 (93%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 1016 agagaacaaagagagcaagagcaggctgaacaccatggaaccagtggtctggcagagttg 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176534416 agagaacaaagagagcaagagcaggctgaacaccatggaaccagtggtctggcagagttg 176534357
Query: 1076 gacccagaaccaattattgttaatcctttccagccaatagcatctgtaatcattgaggta 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176534356 gacccagaaccaattattgttaatcctttccagccaatagcatctgtaatcattgaggta 176534297
Query: 1136 tggatggtggcaaatgtaatttttatatcttgagttataaagtctgaagttgagaaagaa 1195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 176534296 tggatggtggcaaatgtaatttttatatcttgagttataaagtcggaagttgagaaagaa 176534237
Query: 1196 agcagggagttgggataggaggcctggaggtagaagtatttcaccaaaagtttattattt 1255
|||||||||||||| ||||||| |||||||||||||||||||||| | |||||||||||
Sbjct: 176534236 ggcagggagttgggaaaggaggcatggaggtagaagtatttcaccagaggtttattattt 176534177
Query: 1256 gtgaaagaaatttattggcgaagaaaggttaaaagtttgctcnnnnnnnncttgcttgtc 1315
|||||||||||| | ||| ||||||||||||||||||||| ||||||||||
Sbjct: 176534176 gtgaaagaaattaagtgggagagaaaggttaaaagtttgctc--ttttttcttgcttgtc 176534119
Query: 1316 aaatttatcttttgat 1331
||||||||||||||||
Sbjct: 176534118 aaatttatcttttgat 176534103
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 815 gaaccttgttcagcagtcttgggatatggaaagaaaattgataagtccattaaaaaaggc 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176537825 gaaccttgttcagcagtcttgggatatggaaagaaaattgataagtccattaaaaaaggc 176537766
Query: 875 ctttattggctgctacatattattgcaagagactttgatgccttaaatgaacgcatccaa 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176537765 ctttattggctgctacatattattgcaagagactttgatgccttaaatgaacgcatccaa 176537706
Query: 935 aaagacacaacagaacaacgtgctcttgaggaacaagagaaacgagaaagggcagaacga 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176537705 aaagacacaacagaacaacgtgctcttgaggaacaagagaaacgagaaagggcagaacga 176537646
Query: 995 gtacgaaaattacgcgaggaaag 1017
|||||||||||||||||||||||
Sbjct: 176537645 gtacgaaaattacgcgaggaaag 176537623
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 709 gttggcaaataaacaagataaggaaggggctttaggagaagctgatgtgattgaatgtct 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176539040 gttggcaaataaacaagataaggaaggggctttaggagaagctgatgtgattgaatgtct 176538981
Query: 769 ctctctggaaaaactggtcaatgagcacaagtgcctatgtcaaatag 815
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176538980 ctctctggaaaaactggtcaatgagcacaagtgcctatgtcaaatag 176538934
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,150,464
Number of extensions: 277
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 10
Length of query: 1331
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1310
Effective length of database: 2,808,413,156
Effective search space: 3679021234360
Effective search space used: 3679021234360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)