Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002909
(1911 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076905.1| beta-glucuronidase [Bos taurus]. 1080 0.0
>ref|NP_001076905.1| beta-glucuronidase [Bos taurus].
Length = 652
Score = 1080 bits (2792), Expect = 0.0
Identities = 511/606 (84%), Positives = 547/606 (90%), Gaps = 2/606 (0%)
Frame = +3
Query: 75 MVRGPAGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGF 254
M+RG AGAWAVLGPLLWGCGL+LLQGGMLYP+ESRSRERKEL+GLWSFRADFSDNRRQGF
Sbjct: 1 MLRGSAGAWAVLGPLLWGCGLSLLQGGMLYPRESRSRERKELDGLWSFRADFSDNRRQGF 60
Query: 255 EQQWYRKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRV 434
EQQWYR PLRESGPTLDMPVPSSFND+ QDG+LRSF+GWVWYERE LPQRWT+DLGTRV
Sbjct: 61 EQQWYRAPLRESGPTLDMPVPSSFNDVGQDGQLRSFVGWVWYEREITLPQRWTEDLGTRV 120
Query: 435 VLRISSAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSSCRITIAINNTLSPHT 614
VLRI SAHYYAIVWVNGVHV EHEGGHLPFEADISKLVQ+GPLSSCRITIAINNTLSPHT
Sbjct: 121 VLRIGSAHYYAIVWVNGVHVLEHEGGHLPFEADISKLVQSGPLSSCRITIAINNTLSPHT 180
Query: 615 LPPGTILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAYXXXXXXXXXXXXX 794
LPPGTILYKTD S YPKGYFVQNT FDFFNYAGLHR VLLYTTPT Y
Sbjct: 181 LPPGTILYKTDPSMYPKGYFVQNTKFDFFNYAGLHRSVLLYTTPTTYIDDITVTTDMDQD 240
Query: 795 XGLVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYL 974
GLVNYQI VQGSDHFQ++V LLDEEG+V+AKG G +GQLQVPSAHLWWPYLMHE PAYL
Sbjct: 241 IGLVNYQIIVQGSDHFQVDVSLLDEEGKVMAKGAGAEGQLQVPSAHLWWPYLMHEHPAYL 300
Query: 975 YSLEVKLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG 1154
YSLEVKLTAQT+ GP+SDFYTLPVGIRTVAVT+ QFLINGKPFYF GVNKHEDADIRGKG
Sbjct: 301 YSLEVKLTAQTAVGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFRGVNKHEDADIRGKG 360
Query: 1155 FDWSLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFSN 1334
FDW LLVKDFNLLRWLGANAFRTSHYPY+EEV+QLCDRYGIVVIDESPGVGIVL +SFSN
Sbjct: 361 FDWPLLVKDFNLLRWLGANAFRTSHYPYSEEVLQLCDRYGIVVIDESPGVGIVLVESFSN 420
Query: 1335 ASLQHHLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPVT 1514
SLQHHLEVMEEM+RRDKNHPAVVMWS+ANEP+SFL+ A YYFK LI HTKALDPSRPVT
Sbjct: 421 VSLQHHLEVMEEMIRRDKNHPAVVMWSLANEPASFLKPAGYYFKTLIAHTKALDPSRPVT 480
Query: 1515 FVTSSSYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQSE 1694
FVT+++YE DLG PYVD+ICVNSYYSWYHDYGHMEVIQLQLATQFE W++AYQKP+IQSE
Sbjct: 481 FVTNTNYEADLGAPYVDIICVNSYYSWYHDYGHMEVIQLQLATQFENWYKAYQKPMIQSE 540
Query: 1695 YGAETIIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKENVGGELIWKFCRFY--DRPIT 1868
YGA+ I GFHEDPPLMFSEEYQKGLLQQYHV+LDQKRKE V GELIW F F P+
Sbjct: 541 YGADAIEGFHEDPPLMFSEEYQKGLLQQYHVVLDQKRKEYVVGELIWNFADFMTNQSPVR 600
Query: 1869 SEGHRE 1886
G+R+
Sbjct: 601 MIGNRK 606
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,634,279
Number of extensions: 2079776
Number of successful extensions: 8317
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8248
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 528
Effective length of database: 14,074,782
Effective search space: 7431484896
Effective search space used: 7431484896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002909
(1911 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003191.1| beta-glucuronidase precursor [Canis lupus fa... 1063 0.0
>ref|NP_001003191.1| beta-glucuronidase precursor [Canis lupus familiaris].
Length = 651
Score = 1063 bits (2750), Expect(2) = 0.0
Identities = 502/592 (84%), Positives = 539/592 (91%)
Frame = +3
Query: 75 MVRGPAGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGF 254
M RGPAGAW LGPLLW CGLAL +GGMLYP+ES SRERK+L+GLWSFRADFSD RRQGF
Sbjct: 1 MSRGPAGAWVALGPLLWTCGLAL-EGGMLYPRESPSRERKDLDGLWSFRADFSDGRRQGF 59
Query: 255 EQQWYRKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRV 434
EQQWYR PLRESGPTLDMPVPSSFND+ QD +LRSF+GWVWYEREA LP+RW+QD GTRV
Sbjct: 60 EQQWYRAPLRESGPTLDMPVPSSFNDVGQDRQLRSFVGWVWYEREATLPRRWSQDPGTRV 119
Query: 435 VLRISSAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSSCRITIAINNTLSPHT 614
VLRI SAHYYAIVWVNGVHV EHEGGHLPFEADISKLVQ+GPLSSCRIT+AINNTL+PHT
Sbjct: 120 VLRIGSAHYYAIVWVNGVHVAEHEGGHLPFEADISKLVQSGPLSSCRITLAINNTLTPHT 179
Query: 615 LPPGTILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAYXXXXXXXXXXXXX 794
LPPGTI+YKTD SKYPKGYFVQNT FDFFNYAGLHRPVLLYTTPT Y
Sbjct: 180 LPPGTIVYKTDASKYPKGYFVQNTYFDFFNYAGLHRPVLLYTTPTTYIDDITVTTGVDQD 239
Query: 795 XGLVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYL 974
GLV+YQIFVQGS+HFQLEV+LLDEEG+VVA+GTG QG+LQVP+ HLWWPYLMHE PAYL
Sbjct: 240 TGLVDYQIFVQGSEHFQLEVYLLDEEGKVVAQGTGSQGRLQVPNVHLWWPYLMHEHPAYL 299
Query: 975 YSLEVKLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG 1154
YSLEV+LTAQ +AGP+SDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG
Sbjct: 300 YSLEVRLTAQMAAGPVSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG 359
Query: 1155 FDWSLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFSN 1334
FDW LLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGI+L QS+SN
Sbjct: 360 FDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIMLVQSYSN 419
Query: 1335 ASLQHHLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPVT 1514
SLQHHLEVM E+VRRDKNHP+VVMWSVANEP+SFL+ AAYYFK LI HTKALDPSRPVT
Sbjct: 420 VSLQHHLEVMGELVRRDKNHPSVVMWSVANEPTSFLKPAAYYFKTLIAHTKALDPSRPVT 479
Query: 1515 FVTSSSYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQSE 1694
FVT+S+YE DLG PYVDVICVNSYYSWYHDYGHMEVIQLQLAT+FE W+ YQKPIIQSE
Sbjct: 480 FVTNSNYEADLGAPYVDVICVNSYYSWYHDYGHMEVIQLQLATEFENWYRTYQKPIIQSE 539
Query: 1695 YGAETIIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKENVGGELIWKFCRF 1850
YGAETI GFH+DPPLMFSEEYQKGLL+QYH++LDQKRKE V GELIW F F
Sbjct: 540 YGAETIAGFHQDPPLMFSEEYQKGLLEQYHLVLDQKRKEYVVGELIWNFADF 591
Score = 50.1 bits (118), Expect(2) = 0.0
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 1837 NFADFMTDQSPQRAIGKRKGIFPRQ 1911
NFADFMTDQSPQRA+G RKGIF RQ
Sbjct: 587 NFADFMTDQSPQRAVGNRKGIFTRQ 611
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,918,623
Number of extensions: 2158680
Number of successful extensions: 8583
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8505
Number of HSP's successfully gapped: 2
Length of query: 637
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 528
Effective length of database: 15,240,880
Effective search space: 8047184640
Effective search space used: 8047184640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002909
(1911 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000172.2| beta-glucuronidase precursor [Homo sapiens]. 975 0.0
Alignment gi|XP_003403444.1| PREDICTED: beta-glucuronidase-like protein S... 86 2e-16
Alignment gi|XP_003403443.1| PREDICTED: beta-glucuronidase-like protein S... 86 2e-16
Alignment gi|XP_003403442.1| PREDICTED: beta-glucuronidase-like protein S... 86 2e-16
Alignment gi|XP_003403472.1| PREDICTED: beta-glucuronidase-like protein S... 86 2e-16
>ref|NP_000172.2| beta-glucuronidase precursor [Homo sapiens].
Length = 651
Score = 975 bits (2521), Expect(2) = 0.0
Identities = 470/593 (79%), Positives = 510/593 (86%), Gaps = 1/593 (0%)
Frame = +3
Query: 75 MVRGPAGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGF 254
M RG A AWA LGPLLWGC L L QGGMLYPQES SRE KEL+GLWSFRADFSDNRR+GF
Sbjct: 1 MARGSAVAWAALGPLLWGCALGL-QGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGF 59
Query: 255 EQQWYRKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRV 434
E+QWYR+PL ESGPT+DMPVPSSFNDISQD RLR F+GWVWYERE ILP+RWTQDL TRV
Sbjct: 60 EEQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRV 119
Query: 435 VLRISSAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSS-CRITIAINNTLSPH 611
VLRI SAH YAIVWVNGV EHEGG+LPFEADIS LVQ GPL S RITIAINNTL+P
Sbjct: 120 VLRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPT 179
Query: 612 TLPPGTILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAYXXXXXXXXXXXX 791
TLPPGTI Y TDTSKYPKGYFVQNT FDFFNYAGL R VLLYTTPT Y
Sbjct: 180 TLPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTTYIDDITVTTSVEQ 239
Query: 792 XXGLVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAY 971
GLVNYQI V+GS+ F+LEV LLD E +VVA GTG QGQL+VP LWWPYLMHERPAY
Sbjct: 240 DSGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPYLMHERPAY 299
Query: 972 LYSLEVKLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGK 1151
LYSLEV+LTAQTS GP+SDFYTLPVGIRTVAVT+ QFLINGKPFYFHGVNKHEDADIRGK
Sbjct: 300 LYSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGK 359
Query: 1152 GFDWSLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFS 1331
GFDW LLVKDFNLLRWLGANAFRTSHYPYAEEVMQ+CDRYGIVVIDE PGVG+ L Q F+
Sbjct: 360 GFDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFN 419
Query: 1332 NASLQHHLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPV 1511
N SL HH++VMEE+VRRDKNHPAVVMWSVANEP+S LE A YY KM+I HTK+LDPSRPV
Sbjct: 420 NVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPV 479
Query: 1512 TFVTSSSYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQS 1691
TFV++S+Y D G PYVDVIC+NSYYSWYHDYGH+E+IQLQLATQFE W++ YQKPIIQS
Sbjct: 480 TFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQS 539
Query: 1692 EYGAETIIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKENVGGELIWKFCRF 1850
EYGAETI GFH+DPPLMF+EEYQK LL+QYH+ LDQKR++ V GELIW F F
Sbjct: 540 EYGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADF 592
Score = 43.1 bits (100), Expect(2) = 0.0
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 1837 NFADFMTDQSPQRAIGKRKGIFPRQ 1911
NFADFMT+QSP R +G +KGIF RQ
Sbjct: 588 NFADFMTEQSPTRVLGNKKGIFTRQ 612
>ref|XP_003403444.1| PREDICTED: beta-glucuronidase-like protein SMA4-like isoform 3 [Homo
sapiens].
Length = 140
Score = 85.5 bits (210), Expect = 2e-16
Identities = 44/74 (59%), Positives = 52/74 (70%)
Frame = +3
Query: 801 LVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYLYS 980
LVNYQI V+ S+ F+LEV LL+ E +VV G QGQL+V A+LWWPYLMHE PAYLYS
Sbjct: 18 LVNYQISVKCSNQFKLEVCLLNAENKVVDNQAGTQGQLKVLGANLWWPYLMHEHPAYLYS 77
Query: 981 LEVKLTAQTSAGPL 1022
E + S GPL
Sbjct: 78 WEDGDCSHQSLGPL 91
Score = 62.8 bits (151), Expect = 1e-09
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 1463 QDADRPHQSLGPLPARDLRDQLQL*KRPGGAVCGRDXXXXXXXXXXXXRSHGGDSAAAGH 1642
+D D HQSLGPLPA DL DQL L R GG+VCG D R+ G DSAAAG
Sbjct: 79 EDGDCSHQSLGPLPACDLCDQLHLRSRQGGSVCGCDPCEQLLLLVSQLRAPGVDSAAAGR 138
Query: 1643 PV 1648
PV
Sbjct: 139 PV 140
>ref|XP_003403443.1| PREDICTED: beta-glucuronidase-like protein SMA4-like isoform 2 [Homo
sapiens].
Length = 140
Score = 85.5 bits (210), Expect = 2e-16
Identities = 44/74 (59%), Positives = 52/74 (70%)
Frame = +3
Query: 801 LVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYLYS 980
LVNYQI V+ S+ F+LEV LL+ E +VV G QGQL+V A+LWWPYLMHE PAYLYS
Sbjct: 18 LVNYQISVKCSNQFKLEVCLLNAENKVVDNQAGTQGQLKVLGANLWWPYLMHEHPAYLYS 77
Query: 981 LEVKLTAQTSAGPL 1022
E + S GPL
Sbjct: 78 WEDGDCSHQSLGPL 91
Score = 62.8 bits (151), Expect = 1e-09
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 1463 QDADRPHQSLGPLPARDLRDQLQL*KRPGGAVCGRDXXXXXXXXXXXXRSHGGDSAAAGH 1642
+D D HQSLGPLPA DL DQL L R GG+VCG D R+ G DSAAAG
Sbjct: 79 EDGDCSHQSLGPLPACDLCDQLHLRSRQGGSVCGCDPCEQLLLLVSQLRAPGVDSAAAGR 138
Query: 1643 PV 1648
PV
Sbjct: 139 PV 140
>ref|XP_003403442.1| PREDICTED: beta-glucuronidase-like protein SMA4-like isoform 1 [Homo
sapiens].
Length = 140
Score = 85.5 bits (210), Expect = 2e-16
Identities = 44/74 (59%), Positives = 52/74 (70%)
Frame = +3
Query: 801 LVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYLYS 980
LVNYQI V+ S+ F+LEV LL+ E +VV G QGQL+V A+LWWPYLMHE PAYLYS
Sbjct: 18 LVNYQISVKCSNQFKLEVCLLNAENKVVDNQAGTQGQLKVLGANLWWPYLMHEHPAYLYS 77
Query: 981 LEVKLTAQTSAGPL 1022
E + S GPL
Sbjct: 78 WEDGDCSHQSLGPL 91
Score = 62.8 bits (151), Expect = 1e-09
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 1463 QDADRPHQSLGPLPARDLRDQLQL*KRPGGAVCGRDXXXXXXXXXXXXRSHGGDSAAAGH 1642
+D D HQSLGPLPA DL DQL L R GG+VCG D R+ G DSAAAG
Sbjct: 79 EDGDCSHQSLGPLPACDLCDQLHLRSRQGGSVCGCDPCEQLLLLVSQLRAPGVDSAAAGR 138
Query: 1643 PV 1648
PV
Sbjct: 139 PV 140
>ref|XP_003403472.1| PREDICTED: beta-glucuronidase-like protein SMA5-like [Homo sapiens].
Length = 140
Score = 85.5 bits (210), Expect = 2e-16
Identities = 44/74 (59%), Positives = 52/74 (70%)
Frame = +3
Query: 801 LVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYLYS 980
LVNYQI V+ S+ F+LEV LL+ E +VV G QGQL+V A+LWWPYLMHE PAYLYS
Sbjct: 18 LVNYQISVKCSNQFKLEVCLLNAENKVVDNQAGTQGQLKVLGANLWWPYLMHEHPAYLYS 77
Query: 981 LEVKLTAQTSAGPL 1022
E + S GPL
Sbjct: 78 WEDGDCSHQSLGPL 91
Score = 62.8 bits (151), Expect = 1e-09
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 1463 QDADRPHQSLGPLPARDLRDQLQL*KRPGGAVCGRDXXXXXXXXXXXXRSHGGDSAAAGH 1642
+D D HQSLGPLPA DL DQL L R GG+VCG D R+ G DSAAAG
Sbjct: 79 EDGDCSHQSLGPLPACDLWDQLHLRSRQGGSVCGCDPCEQLLLLVSQLRAPGVDSAAAGR 138
Query: 1643 PV 1648
PV
Sbjct: 139 PV 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,288,053
Number of extensions: 2092247
Number of successful extensions: 8111
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8013
Number of HSP's successfully gapped: 10
Length of query: 637
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 528
Effective length of database: 14,704,088
Effective search space: 7763758464
Effective search space used: 7763758464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002909
(1911 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034498.1| beta-glucuronidase precursor [Mus musculus]. 942 0.0
>ref|NP_034498.1| beta-glucuronidase precursor [Mus musculus].
Length = 648
Score = 942 bits (2435), Expect(2) = 0.0
Identities = 448/587 (76%), Positives = 502/587 (85%)
Frame = +3
Query: 90 AGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGFEQQWY 269
+ W LG LL C LAL +GGML+P+ES SRE K L+GLW FRAD S+NR QGFEQQWY
Sbjct: 6 SACWVALGQLLCSCALAL-KGGMLFPKESPSRELKALDGLWHFRADLSNNRLQGFEQQWY 64
Query: 270 RKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRVVLRIS 449
R+PLRESGP LDMPVPSSFNDI+Q+ LR FIGWVWYEREAILP+RWTQD RVVLRI+
Sbjct: 65 RQPLRESGPVLDMPVPSSFNDITQEAALRDFIGWVWYEREAILPRRWTQDTDMRVVLRIN 124
Query: 450 SAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSSCRITIAINNTLSPHTLPPGT 629
SAHYYA+VWVNG+HV EHEGGHLPFEADISKLVQ+GPL++CRITIAINNTL+PHTLPPGT
Sbjct: 125 SAHYYAVVWVNGIHVVEHEGGHLPFEADISKLVQSGPLTTCRITIAINNTLTPHTLPPGT 184
Query: 630 ILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAYXXXXXXXXXXXXXXGLVN 809
I+YKTDTS YPKGYFVQ+T+FDFFNYAGLHR V+LYTTPT Y GLV
Sbjct: 185 IVYKTDTSMYPKGYFVQDTSFDFFNYAGLHRSVVLYTTPTTYIDDITVITNVEQDIGLVT 244
Query: 810 YQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYLYSLEV 989
Y I VQGS+HFQLEV LLDE G+VVA GTG QGQLQVPSA+LWWPYLMHE PAY+YSLEV
Sbjct: 245 YWISVQGSEHFQLEVQLLDEGGKVVAHGTGNQGQLQVPSANLWWPYLMHEHPAYMYSLEV 304
Query: 990 KLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKGFDWSL 1169
K+T S ++D+YTLP+GIRTVAVT+ +FLINGKPFYF GVNKHED+DIRGKGFDW L
Sbjct: 305 KVTTTES---VTDYYTLPIGIRTVAVTKSKFLINGKPFYFQGVNKHEDSDIRGKGFDWPL 361
Query: 1170 LVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFSNASLQH 1349
LVKDFNLLRWLGAN+FRTSHYPY+EEV+QLCDRYGIVVIDE PGVGIVL QSF N SL+H
Sbjct: 362 LVKDFNLLRWLGANSFRTSHYPYSEEVLQLCDRYGIVVIDECPGVGIVLPQSFGNESLRH 421
Query: 1350 HLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPVTFVTSS 1529
HLEVMEE+VRRDKNHPAVVMWSVANEPSS L+ AAYYFK LI HTKALD +RPVTFV+++
Sbjct: 422 HLEVMEELVRRDKNHPAVVMWSVANEPSSALKPAAYYFKTLITHTKALDLTRPVTFVSNA 481
Query: 1530 SYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQSEYGAET 1709
Y+ DLG PYVDVICVNSY+SWYHDYGH+EVIQ QL +QFE W++ +QKPIIQSEYGA+
Sbjct: 482 KYDADLGAPYVDVICVNSYFSWYHDYGHLEVIQPQLNSQFENWYKTHQKPIIQSEYGADA 541
Query: 1710 IIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKENVGGELIWKFCRF 1850
I G HEDPP MFSEEYQK +L+ YH +LDQKRKE V GELIW F F
Sbjct: 542 IPGIHEDPPRMFSEEYQKAVLENYHSVLDQKRKEYVVGELIWNFADF 588
Score = 43.1 bits (100), Expect(2) = 0.0
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +1
Query: 1837 NFADFMTDQSPQRAIGKRKGIFPRQ 1911
NFADFMT+QSP R IG +KGIF RQ
Sbjct: 584 NFADFMTNQSPLRVIGNKKGIFTRQ 608
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,462,306
Number of extensions: 1734752
Number of successful extensions: 6487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6426
Number of HSP's successfully gapped: 2
Length of query: 637
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 529
Effective length of database: 12,373,671
Effective search space: 6545671959
Effective search space used: 6545671959
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002909
(1911 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116593.1| beta-glucuronidase precursor [Sus scrofa]. 1186 0.0
>ref|NP_001116593.1| beta-glucuronidase precursor [Sus scrofa].
Length = 652
Score = 1186 bits (3068), Expect = 0.0
Identities = 573/592 (96%), Positives = 573/592 (96%)
Frame = +3
Query: 75 MVRGPAGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGF 254
MVRGPAGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGF
Sbjct: 1 MVRGPAGAWAVLGPLLWGCGLALLQGGMLYPQESRSRERKELNGLWSFRADFSDNRRQGF 60
Query: 255 EQQWYRKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRV 434
EQQWYRKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRV
Sbjct: 61 EQQWYRKPLRESGPTLDMPVPSSFNDISQDGRLRSFIGWVWYEREAILPQRWTQDLGTRV 120
Query: 435 VLRISSAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSSCRITIAINNTLSPHT 614
VLRISSAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSSCRITIAINNTLSPHT
Sbjct: 121 VLRISSAHYYAIVWVNGVHVTEHEGGHLPFEADISKLVQTGPLSSCRITIAINNTLSPHT 180
Query: 615 LPPGTILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAYXXXXXXXXXXXXX 794
LPPGTILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAY
Sbjct: 181 LPPGTILYKTDTSKYPKGYFVQNTNFDFFNYAGLHRPVLLYTTPTAYIDDITVTTDVDQD 240
Query: 795 XGLVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYL 974
GLVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYL
Sbjct: 241 TGLVNYQIFVQGSDHFQLEVHLLDEEGRVVAKGTGGQGQLQVPSAHLWWPYLMHERPAYL 300
Query: 975 YSLEVKLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG 1154
YSLEVKLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG
Sbjct: 301 YSLEVKLTAQTSAGPLSDFYTLPVGIRTVAVTERQFLINGKPFYFHGVNKHEDADIRGKG 360
Query: 1155 FDWSLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFSN 1334
FDWSLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFSN
Sbjct: 361 FDWSLLVKDFNLLRWLGANAFRTSHYPYAEEVMQLCDRYGIVVIDESPGVGIVLAQSFSN 420
Query: 1335 ASLQHHLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPVT 1514
ASLQHHLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPVT
Sbjct: 421 ASLQHHLEVMEEMVRRDKNHPAVVMWSVANEPSSFLEQAAYYFKMLIGHTKALDPSRPVT 480
Query: 1515 FVTSSSYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQSE 1694
FVTSSSYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQSE
Sbjct: 481 FVTSSSYEKDLGVPYVDVICVNSYYSWYHDYGHMEVIQLQLATQFERWHEAYQKPIIQSE 540
Query: 1695 YGAETIIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKENVGGELIWKFCRF 1850
YGAETIIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKE V GELIW F F
Sbjct: 541 YGAETIIGFHEDPPLMFSEEYQKGLLQQYHVILDQKRKEYVVGELIWNFADF 592
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 1837 NFADFMTDQSPQRAIGKRKGIFPRQ 1911
NFADFMTDQSPQRAIG RKGIF RQ
Sbjct: 588 NFADFMTDQSPQRAIGNRKGIFTRQ 612
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,575,158
Number of extensions: 1344525
Number of successful extensions: 5462
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5405
Number of HSP's successfully gapped: 2
Length of query: 637
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 532
Effective length of database: 8,729,747
Effective search space: 4644225404
Effective search space used: 4644225404
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002909
(1911 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 565 e-158
>Sscrofa_Chr03
|| Length = 144787322
Score = 565 bits (285), Expect = e-158
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 3 ccccgcccccgcctcccgtgcttggggctccgggcgtggggaggctggcagctacctgcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16924687 ccccgcccccgcctcccgtgcttggggctccgggcgtggggaggctggcagctacctgcc 16924746
Query: 63 cgctgggcaatcatggtccggggtccggcgggcgcctgggccgtgctcggcccgctgctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16924747 cgctgggcaatcatggtccggggtccggcgggcgcctgggccgtgctcggcccgctgctc 16924806
Query: 123 tggggctgcgggctggcgctgctgcagggcgggatgctctacccccaggagagccgatcg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16924807 tggggctgcgggctggcgctgctgcagggcgggatgctctacccccaggagagccgatcg 16924866
Query: 183 cgggagcgcaaggagttgaatggcctctggagtttccgcgccgacttctccgacaaccgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16924867 cgggagcgcaaggagttgaatggcctctggagtttccgcgccgacttctccgacaaccgg 16924926
Query: 243 cgccagggcttcgagcagcagtggtaccggaagccgctgcgggag 287
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16924927 cgccagggcttcgagcagcagtggtaccggaagccgctgcgggag 16924971
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 796 caggactggtgaattaccagatttttgtccagggcagtgaccacttccagctggaagtgc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16928210 caggactggtgaattaccagatttttgtccagggcagtgaccacttccagctggaagtgc 16928269
Query: 856 accttctggatgaggaaggcagggtggtggccaaggggacggggggccagggccagctgc 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16928270 accttctggatgaggaaggcagggtggtggccaaggggacggggggccagggccagctgc 16928329
Query: 916 aggtgcccagtgcccatctctggtggccgtacctgatgcacgagcgccctgcctacctgt 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16928330 aggtgcccagtgcccatctctggtggccgtacctgatgcacgagcgccctgcctacctgt 16928389
Query: 976 actcgttggaggt 988
|||||||||||||
Sbjct: 16928390 actcgttggaggt 16928402
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 286 agtcgggccccaccctggacatgccggttccctccagcttcaacgacataagccaggacg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16926790 agtcgggccccaccctggacatgccggttccctccagcttcaacgacataagccaggacg 16926849
Query: 346 gacggctgcggagctttatcggctgggtgtggtatgaacgggaggccatcctgccccagc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16926850 gacggctgcggagctttatcggctgggtgtggtatgaacgggaggccatcctgccccagc 16926909
Query: 406 gatggacccaggacctgggcaccagagtggtgctgaggatcagcagtgcccactactacg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16926910 gatggacccaggacctgggcaccagagtggtgctgaggatcagcagtgcccactactacg 16926969
Query: 466 ccattgtg 473
||||||||
Sbjct: 16926970 ccattgtg 16926977
Score = 367 bits (185), Expect = 2e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 473 gtgggtgaatggagtccatgtgacagagcacgaagggggccacctccccttcgaggccga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16927279 gtgggtgaatggagtccatgtgacagagcacgaagggggccacctccccttcgaggccga 16927338
Query: 533 catcagcaagctggtccagactgggcccctgtcctcctgccgcatcaccatcgccatcaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16927339 catcagcaagctggtccagactgggcccctgtcctcctgccgcatcaccatcgccatcaa 16927398
Query: 593 caacacgctgtccccccacaccctgccgccagggaccattctctataagacggacacctc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16927399 caacacgctgtccccccacaccctgccgccagggaccattctctataagacggacacctc 16927458
Query: 653 caagt 657
|||||
Sbjct: 16927459 caagt 16927463
Score = 355 bits (179), Expect = 6e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 1140 atccgaggcaagggctttgactggtcgctgctggtgaaggacttcaacctgctccgctgg 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929165 atccgaggcaagggctttgactggtcgctgctggtgaaggacttcaacctgctccgctgg 16929224
Query: 1200 ctgggtgccaacgccttccgcaccagccactacccctacgcagaggaggtgatgcagctc 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929225 ctgggtgccaacgccttccgcaccagccactacccctacgcagaggaggtgatgcagctc 16929284
Query: 1260 tgtgaccgttatgggatcgtggtcatcgatgagagtccgggtgtgggcatcgtgctggc 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929285 tgtgaccgttatgggatcgtggtcatcgatgagagtccgggtgtgggcatcgtgctggc 16929343
Score = 355 bits (179), Expect = 6e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 1550 ggtgccgtatgtggacgtgatctgtgtgaacagttactactcctggtatcatgactacgg 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16933875 ggtgccgtatgtggacgtgatctgtgtgaacagttactactcctggtatcatgactacgg 16933934
Query: 1610 tcacatggaggtgattcagctgcagctggccacccagtttgagaggtggcatgaggccta 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16933935 tcacatggaggtgattcagctgcagctggccacccagtttgagaggtggcatgaggccta 16933994
Query: 1670 ccagaaaccaattatccagagcgagtacggggcagaaaccatcatagggtttcacgagg 1728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16933995 ccagaaaccaattatccagagcgagtacggggcagaaaccatcatagggtttcacgagg 16934053
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 985 aggtgaagctcacggcacagacctccgctgggcccctctctgacttctacaccctccctg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16928764 aggtgaagctcacggcacagacctccgctgggcccctctctgacttctacaccctccctg 16928823
Query: 1045 tggggattcgcaccgtggctgtcacagagagacagttcctcatcaacgggaaacctttct 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16928824 tggggattcgcaccgtggctgtcacagagagacagttcctcatcaacgggaaacctttct 16928883
Query: 1105 atttccatggggttaacaagcacgaggatgcagat 1139
|||||||||||||||||||||||||||||||||||
Sbjct: 16928884 atttccatggggttaacaagcacgaggatgcagat 16928918
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1319 ccagagcttcagcaacgcgtctctgcagcaccacctagaggtgatggaggagatggttcg 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929433 ccagagcttcagcaacgcgtctctgcagcaccacctagaggtgatggaggagatggttcg 16929492
Query: 1379 cagggacaagaaccacccggccgttgtgatgtggtccgtggccaatgagccttcttcctt 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929493 cagggacaagaaccacccggccgttgtgatgtggtccgtggccaatgagccttcttcctt 16929552
Query: 1439 cctggaacaggctgcttactacttcaag 1466
||||||||||||||||||||||||||||
Sbjct: 16929553 cctggaacaggctgcttactacttcaag 16929580
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 656 gtaccccaagggttactttgtccagaacacgaactttgacttcttcaactacgcgggact 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16927635 gtaccccaagggttactttgtccagaacacgaactttgacttcttcaactacgcgggact 16927694
Query: 716 gcatcggcccgtgctcctctacaccacgcctaccgcctacatcgatgacatcaccgtcac 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16927695 gcatcggcccgtgctcctctacaccacgcctaccgcctacatcgatgacatcaccgtcac 16927754
Query: 776 caccgacgtggaccaggacacagg 799
||||||||||||||||||||||||
Sbjct: 16927755 caccgacgtggaccaggacacagg 16927778
Score = 244 bits (123), Expect = 2e-61
Identities = 136/139 (97%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 1726 aggatccacctctcatgttcagtgaagaataccagaaaggcctgctacagcagtatcatg 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16937177 aggatccacctctcatgttcagtgaagaataccagaaaggcctgctacagcagtatcatg 16937236
Query: 1786 tgattctggatcaaaaacgcaaagaaaatgtgggtggagagctcatctggaaattttgcc 1845
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct: 16937237 tgattctggatcaaaaacgcaaagaatatgtggttggagagctcatctgg-aattttgcc 16937295
Query: 1846 gattttatgaccgaccaat 1864
|||||||||||||||||||
Sbjct: 16937296 gattttatgaccgaccaat 16937314
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1466 gatgctgatcggccacaccaaagccttggacccctcccggcccgtgaccttcgtgaccag 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16932163 gatgctgatcggccacaccaaagccttggacccctcccggcccgtgaccttcgtgaccag 16932222
Query: 1526 ctccagctatgaaaaagacctgggggtg 1553
||||||||||||||||||||||||||||
Sbjct: 16932223 ctccagctatgaaaaagacctgggggtg 16932250
Score = 77.8 bits (39), Expect = 2e-11
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1865 cacctcagagggccatagggaaaagaaaagggatcttccctcgacag 1911
|||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 16939039 cacctcagagggccatagggaatagaaaagggatcttcactcgacag 16939085
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,019,323
Number of extensions: 403
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 12
Length of query: 1911
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1889
Effective length of database: 2,808,408,574
Effective search space: 5305083796286
Effective search space used: 5305083796286
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)