Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002916
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030581.1| vacuolar protein sorting-associated protein ... 445 e-125
>ref|NP_001030581.1| vacuolar protein sorting-associated protein 28 homolog [Bos
taurus].
Length = 221
Score = 445 bits (1145), Expect = e-125
Identities = 220/221 (99%), Positives = 221/221 (100%)
Frame = +2
Query: 134 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 313
MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC
Sbjct: 1 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 60
Query: 314 VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD 493
VTPNEYTAACSRLLVQYKAAFRQVQGSE+SSIDEFCRKFRLDCPLAMERIKEDRPITIKD
Sbjct: 61 VTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKD 120
Query: 494 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 673
DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV
Sbjct: 121 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 180
Query: 674 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 181 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 221
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,504,340
Number of extensions: 1154023
Number of successful extensions: 5626
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5590
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002916
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849245.1| PREDICTED: similar to vacuolar protein sorting ... 421 e-118
Alignment gi|XP_858223.1| PREDICTED: similar to vacuolar protein sorting ... 345 4e-95
Alignment gi|XP_858184.1| PREDICTED: similar to vacuolar protein sorting ... 230 2e-60
>ref|XP_849245.1| PREDICTED: similar to vacuolar protein sorting 28 isoform 1 [Canis
familiaris].
Length = 211
Score = 421 bits (1081), Expect = e-118
Identities = 208/211 (98%), Positives = 211/211 (100%)
Frame = +2
Query: 164 MGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAAC 343
MGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAAC
Sbjct: 1 MGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAAC 60
Query: 344 SRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIA 523
SRLLVQYKAAFRQVQG+E+SSIDEFCRKFRLDCPLAM+RIKEDRPITIKDDKGNLNRCIA
Sbjct: 61 SRLLVQYKAAFRQVQGAEISSIDEFCRKFRLDCPLAMDRIKEDRPITIKDDKGNLNRCIA 120
Query: 524 DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGM 703
DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGM
Sbjct: 121 DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGM 180
Query: 704 SASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
SASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 181 SASDELDDSQVRQMLFDLESAYNAFNRFLHA 211
>ref|XP_858223.1| PREDICTED: similar to vacuolar protein sorting 28 isoform 3 [Canis
familiaris].
Length = 181
Score = 345 bits (885), Expect = 4e-95
Identities = 178/211 (84%), Positives = 181/211 (85%)
Frame = +2
Query: 164 MGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAAC 343
MGAPGNKPELYEEVKLYKNAREREKY TAAC
Sbjct: 1 MGAPGNKPELYEEVKLYKNAREREKY------------------------------TAAC 30
Query: 344 SRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIA 523
SRLLVQYKAAFRQVQG+E+SSIDEFCRKFRLDCPLAM+RIKEDRPITIKDDKGNLNRCIA
Sbjct: 31 SRLLVQYKAAFRQVQGAEISSIDEFCRKFRLDCPLAMDRIKEDRPITIKDDKGNLNRCIA 90
Query: 524 DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGM 703
DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGM
Sbjct: 91 DVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGM 150
Query: 704 SASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
SASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 151 SASDELDDSQVRQMLFDLESAYNAFNRFLHA 181
>ref|XP_858184.1| PREDICTED: similar to vacuolar protein sorting 28 isoform 2 [Canis
familiaris].
Length = 115
Score = 230 bits (586), Expect = 2e-60
Identities = 114/115 (99%), Positives = 115/115 (100%)
Frame = +2
Query: 452 MERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHR 631
M+RIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHR
Sbjct: 1 MDRIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHR 60
Query: 632 MSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
MSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 61 MSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,985,617
Number of extensions: 1167695
Number of successful extensions: 5899
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5869
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002916
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057292.1| vacuolar protein sorting-associated protein 28 ... 440 e-124
Alignment gi|NP_898880.1| vacuolar protein sorting-associated protein 28 ... 368 e-102
>ref|NP_057292.1| vacuolar protein sorting-associated protein 28 homolog isoform 1
[Homo sapiens].
Length = 221
Score = 440 bits (1132), Expect = e-124
Identities = 217/221 (98%), Positives = 221/221 (100%)
Frame = +2
Query: 134 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 313
MFHGIPATPG+GAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC
Sbjct: 1 MFHGIPATPGIGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 60
Query: 314 VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD 493
V+P+EYTAACSRLLVQYKAAFRQVQGSE+SSIDEFCRKFRLDCPLAMERIKEDRPITIKD
Sbjct: 61 VSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKD 120
Query: 494 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 673
DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV
Sbjct: 121 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 180
Query: 674 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 181 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 221
>ref|NP_898880.1| vacuolar protein sorting-associated protein 28 homolog isoform 2
[Homo sapiens].
Length = 233
Score = 368 bits (944), Expect(2) = e-102
Identities = 180/187 (96%), Positives = 185/187 (98%)
Frame = +2
Query: 134 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 313
MFHGIPATPG+GAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC
Sbjct: 1 MFHGIPATPGIGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 60
Query: 314 VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD 493
V+P+EYTAACSRLLVQYKAAFRQVQGSE+SSIDEFCRKFRLDCPLAMERIKEDRPITIKD
Sbjct: 61 VSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKD 120
Query: 494 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 673
DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV
Sbjct: 121 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 180
Query: 674 SQWLQTL 694
SQW +L
Sbjct: 181 SQWWVSL 187
Score = 23.5 bits (49), Expect(2) = e-102
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 781 SLPARLSPASLPRCAARAQPSLWFLLAHWSSVPCCP 888
SLPAR SPA AR P++ S P CP
Sbjct: 186 SLPARQSPAVPETLPARRSPAVPLR----PSAPTCP 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,119,031
Number of extensions: 1139289
Number of successful extensions: 5414
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5373
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002916
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080118.1| vacuolar protein sorting-associated protein 28 ... 444 e-125
>ref|NP_080118.1| vacuolar protein sorting-associated protein 28 homolog [Mus
musculus].
Length = 221
Score = 444 bits (1141), Expect = e-125
Identities = 219/221 (99%), Positives = 221/221 (100%)
Frame = +2
Query: 134 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 313
MFHGIPATPG+GAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC
Sbjct: 1 MFHGIPATPGVGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 60
Query: 314 VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD 493
VTPNEYTAACSRLLVQYKAAFRQVQGSE+SSIDEFCRKFRLDCPLAMERIKEDRPITIKD
Sbjct: 61 VTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKD 120
Query: 494 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 673
DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV
Sbjct: 121 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 180
Query: 674 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 181 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 221
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,062,569
Number of extensions: 941032
Number of successful extensions: 4544
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4517
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002916
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927493.1| PREDICTED: vacuolar protein sorting-associat... 446 e-125
>ref|XP_001927493.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog
[Sus scrofa].
Length = 221
Score = 446 bits (1146), Expect = e-125
Identities = 221/221 (100%), Positives = 221/221 (100%)
Frame = +2
Query: 134 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 313
MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC
Sbjct: 1 MFHGIPATPGMGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC 60
Query: 314 VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD 493
VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD
Sbjct: 61 VTPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKD 120
Query: 494 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 673
DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV
Sbjct: 121 DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV 180
Query: 674 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 796
SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA
Sbjct: 181 SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA 221
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,355,025
Number of extensions: 763759
Number of successful extensions: 3642
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3629
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002916
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 757 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 757 bits (382), Expect = 0.0
Identities = 382/382 (100%)
Strand = Plus / Plus
Query: 588 agatccagccggacctgcgggagctgatggagaccatgcatcgcatgagccacctgcctc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458236 agatccagccggacctgcgggagctgatggagaccatgcatcgcatgagccacctgcctc 458295
Query: 648 ccgacttcgagggccgccagacggtcagccagtggctgcagaccctgagcggcatgtcgg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458296 ccgacttcgagggccgccagacggtcagccagtggctgcagaccctgagcggcatgtcgg 458355
Query: 708 cctcggacgagctggacgactcccaggtgcgccagatgctctttgacctggaatcggcct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458356 cctcggacgagctggacgactcccaggtgcgccagatgctctttgacctggaatcggcct 458415
Query: 768 acaacgccttcaatcgcttcctgcacgcctgagcccagcctccctgcccagatgtgcagc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458416 acaacgccttcaatcgcttcctgcacgcctgagcccagcctccctgcccagatgtgcagc 458475
Query: 828 cagggcacagccttccttgtggttcctgctcgcccactggtcatctgtaccctgctgtcc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458476 cagggcacagccttccttgtggttcctgctcgcccactggtcatctgtaccctgctgtcc 458535
Query: 888 acagcagccccatctaggtgtctgtccatggtgtctcgaacctggagccccctccccaca 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458536 acagcagccccatctaggtgtctgtccatggtgtctcgaacctggagccccctccccaca 458595
Query: 948 ataaagatgctctctgactcct 969
||||||||||||||||||||||
Sbjct: 458596 ataaagatgctctctgactcct 458617
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 328 gtacactgcggcctgctcccggctcctggtccagtacaaagctgccttccggcaggttca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457488 gtacactgcggcctgctcccggctcctggtccagtacaaagctgccttccggcaggttca 457547
Query: 388 gggctcagaagtcagctccattgatgaattctgccgcaagttccgt 433
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457548 gggctcagaagtcagctccattgatgaattctgccgcaagttccgt 457593
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 434 ctggactgcccgctcgccatggagaggatcaaggaggaccggcccatcaccatcaaggac 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457697 ctggactgcccgctcgccatggagaggatcaaggaggaccggcccatcaccatcaaggac 457756
Query: 494 gacaagggcaacctcaaccgctgcatcgctgatgtcgtctcg 535
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457757 gacaagggcaacctcaaccgctgcatcgctgatgtcgtctcg 457798
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 238 gtacgacaacatggccgagctgtttgcagtcgtgaagacgatgcaggccctggagaaggc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456735 gtacgacaacatggccgagctgtttgcagtcgtgaagacgatgcaggccctggagaaggc 456794
Query: 298 gtacatcaaggactgcgtcacccccaacgagt 329
||||||||||||||||||||||||||||||||
Sbjct: 456795 gtacatcaaggactgcgtcacccccaacgagt 456826
Score = 168 bits (85), Expect = 4e-39
Identities = 100/105 (95%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 1 gtgcgcaggcgcagacgcgagcggccggcctcgcgcaggcgcagacgtcagggaggggag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 453504 gtgcgcaggcgcagacgcgagcggccggcctcgcgcaggcgcagacgtca-----gggag 453558
Query: 61 cgccgcgccccgcctcatctccgcgacccgcgaggccgctcaggt 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453559 cgccgcgccccgcctcatctccgcgacccgcgaggccgctcaggt 453603
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 101 caggtctctgctgtggccacctgagcctgcaggatgtttcacgggatcccagccactcct 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455708 caggtctctgctgtggccacctgagcctgcaggatgtttcacgggatcccagccactcct 455767
Query: 161 ggcatgggag 170
||||||||||
Sbjct: 455768 ggcatgggag 455777
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 535 gctcttcatcaccgtgatggacaagctgcgcctggagatccgcgccatggacgag 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458106 gctcttcatcaccgtgatggacaagctgcgcctggagatccgcgccatggacgag 458160
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 198 aggaggtgaagctgtacaagaatgcccgtgagcgggagaagt 239
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456472 aggaggtgaagctgtacaagaatgcccgtgagcgggagaagt 456513
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 169 agcccctggaaacaagccggagctgtatgagg 200
||||||||||||||||||||||||||||||||
Sbjct: 456352 agcccctggaaacaagccggagctgtatgagg 456383
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,030,907
Number of extensions: 362
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 9
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)