Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002918
(1221 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192563.1| axin interactor, dorsalization-associated pr... 410 e-114
Alignment gi|XP_002694013.1| PREDICTED: hypothetical protein [Bos taurus]. 410 e-114
Alignment gi|XP_002684902.1| PREDICTED: hypothetical protein [Bos taurus]. 215 6e-56
Alignment gi|XP_001254778.1| PREDICTED: hypothetical protein [Bos taurus]. 215 6e-56
>ref|NP_001192563.1| axin interactor, dorsalization-associated protein [Bos taurus].
Length = 306
Score = 410 bits (1054), Expect = e-114
Identities = 216/285 (75%), Positives = 221/285 (77%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 120
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 716
LAP PDSFPARVPGTLLPRLPSEPGMTLLTI+IEKIGLKD
Sbjct: 121 LAPGEEENLEFEEDEEEGGAGAGSPDSFPARVPGTLLPRLPSEPGMTLLTIKIEKIGLKD 180
Query: 717 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 896
AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF
Sbjct: 181 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 240
Query: 897 FEFNTTSLKKGLPAPSVLLLWRWMKSDLGPSS*NYTRNPLTFKER 1031
FEF KK + + GP + P FK +
Sbjct: 241 FEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRK 285
Score = 132 bits (332), Expect = 6e-31
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +2
Query: 869 KINQRCSYFL*IQHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDF*RKKLQLLT 1048
K+ + + F +HYKPKKRFTSTKCFAFMEMDEI+PGPIVIELYKKPTDF RKKLQLLT
Sbjct: 232 KLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLT 291
Query: 1049 KKPLYLHLHQTLHKE 1093
KKPLYLHLHQTLHKE
Sbjct: 292 KKPLYLHLHQTLHKE 306
>ref|XP_002694013.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 306
Score = 410 bits (1054), Expect = e-114
Identities = 216/285 (75%), Positives = 221/285 (77%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 120
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 716
LAP PDSFPARVPGTLLPRLPSEPGMTLLTI+IEKIGLKD
Sbjct: 121 LAPGEEENLEFEEDEEEGGAGAGSPDSFPARVPGTLLPRLPSEPGMTLLTIKIEKIGLKD 180
Query: 717 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 896
AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF
Sbjct: 181 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 240
Query: 897 FEFNTTSLKKGLPAPSVLLLWRWMKSDLGPSS*NYTRNPLTFKER 1031
FEF KK + + GP + P FK +
Sbjct: 241 FEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRK 285
Score = 132 bits (332), Expect = 6e-31
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +2
Query: 869 KINQRCSYFL*IQHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDF*RKKLQLLT 1048
K+ + + F +HYKPKKRFTSTKCFAFMEMDEI+PGPIVIELYKKPTDF RKKLQLLT
Sbjct: 232 KLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLT 291
Query: 1049 KKPLYLHLHQTLHKE 1093
KKPLYLHLHQTLHKE
Sbjct: 292 KKPLYLHLHQTLHKE 306
>ref|XP_002684902.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 181
Score = 215 bits (548), Expect = 6e-56
Identities = 117/165 (70%), Positives = 121/165 (73%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWG SFRRGADFDSWGQLVEA DE Q+LARHLQKEAQAQHNNSEFT EQK
Sbjct: 1 MSEVTRSLLQRWGVSFRRGADFDSWGQLVEATDENQVLARHLQKEAQAQHNNSEFT-EQK 59
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KT GKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 60 KTTGKIATCLELRSAALQSTQSQVEFKPEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 119
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPG 671
LAP PDSFPARVP ++ LP+ G
Sbjct: 120 LAPGEEENLEFEEDEEEGGAGAGSPDSFPARVP--VVKNLPASTG 162
>ref|XP_001254778.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 181
Score = 215 bits (548), Expect = 6e-56
Identities = 117/165 (70%), Positives = 121/165 (73%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWG SFRRGADFDSWGQLVEA DE Q+LARHLQKEAQAQHNNSEFT EQK
Sbjct: 1 MSEVTRSLLQRWGVSFRRGADFDSWGQLVEATDENQVLARHLQKEAQAQHNNSEFT-EQK 59
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KT GKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 60 KTTGKIATCLELRSAALQSTQSQVEFKPEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 119
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPG 671
LAP PDSFPARVP ++ LP+ G
Sbjct: 120 LAPGEEENLEFEEDEEEGGAGAGSPDSFPARVP--VVKNLPASTG 162
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,210,204
Number of extensions: 873138
Number of successful extensions: 2046
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 6
Length of query: 407
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,207,134
Effective search space: 4290554468
Effective search space used: 4290554468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002918
(1221 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849600.1| PREDICTED: hypothetical protein XP_844507 isofo... 409 e-114
Alignment gi|XP_859251.1| PREDICTED: hypothetical protein XP_854158 isofo... 207 2e-53
>ref|XP_849600.1| PREDICTED: hypothetical protein XP_844507 isoform 2 [Canis
familiaris].
Length = 306
Score = 409 bits (1050), Expect = e-114
Identities = 215/285 (75%), Positives = 220/285 (77%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 120
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 716
LAP PDSFPARVPGTLLPRLP+EPGMT LTIRIEKIGLKD
Sbjct: 121 LAPGEEEHLEFEEDEEEGGAGAGSPDSFPARVPGTLLPRLPAEPGMTSLTIRIEKIGLKD 180
Query: 717 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 896
AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF
Sbjct: 181 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 240
Query: 897 FEFNTTSLKKGLPAPSVLLLWRWMKSDLGPSS*NYTRNPLTFKER 1031
FEF KK + + GP + P FK +
Sbjct: 241 FEFKHYKPKKRFTSTKCFAFMEMDEIKAGPIVIELYKKPTDFKRK 285
Score = 129 bits (324), Expect = 6e-30
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +2
Query: 869 KINQRCSYFL*IQHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDF*RKKLQLLT 1048
K+ + + F +HYKPKKRFTSTKCFAFMEMDEI+ GPIVIELYKKPTDF RKKLQLLT
Sbjct: 232 KLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKAGPIVIELYKKPTDFKRKKLQLLT 291
Query: 1049 KKPLYLHLHQTLHKE 1093
KKPLYLHLHQTLHKE
Sbjct: 292 KKPLYLHLHQTLHKE 306
>ref|XP_859251.1| PREDICTED: hypothetical protein XP_854158 isoform 3 [Canis
familiaris].
Length = 131
Score = 207 bits (526), Expect = 2e-53
Identities = 105/117 (89%), Positives = 105/117 (89%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPL 527
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPL
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPL 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,832,814
Number of extensions: 899499
Number of successful extensions: 2191
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2190
Number of HSP's successfully gapped: 3
Length of query: 407
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 302
Effective length of database: 15,374,224
Effective search space: 4643015648
Effective search space used: 4643015648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002918
(1221 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_073742.2| axin interactor, dorsalization-associated prote... 411 e-115
>ref|NP_073742.2| axin interactor, dorsalization-associated protein [Homo sapiens].
Length = 306
Score = 411 bits (1057), Expect = e-115
Identities = 217/285 (76%), Positives = 221/285 (77%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 120
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 716
LAP PDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD
Sbjct: 121 LAPGEEENLEFEEDEEEGGAGAGSPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 180
Query: 717 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 896
AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF
Sbjct: 181 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 240
Query: 897 FEFNTTSLKKGLPAPSVLLLWRWMKSDLGPSS*NYTRNPLTFKER 1031
FEF KK + + GP + P FK +
Sbjct: 241 FEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRK 285
Score = 132 bits (332), Expect = 6e-31
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +2
Query: 869 KINQRCSYFL*IQHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDF*RKKLQLLT 1048
K+ + + F +HYKPKKRFTSTKCFAFMEMDEI+PGPIVIELYKKPTDF RKKLQLLT
Sbjct: 232 KLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLT 291
Query: 1049 KKPLYLHLHQTLHKE 1093
KKPLYLHLHQTLHKE
Sbjct: 292 KKPLYLHLHQTLHKE 306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,165,384
Number of extensions: 890277
Number of successful extensions: 2144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2143
Number of HSP's successfully gapped: 2
Length of query: 407
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,835,944
Effective search space: 4480455088
Effective search space used: 4480455088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002918
(1221 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_859421.1| axin interactor, dorsalization-associated prote... 400 e-111
>ref|NP_859421.1| axin interactor, dorsalization-associated protein [Mus musculus].
Length = 305
Score = 400 bits (1028), Expect = e-111
Identities = 213/285 (74%), Positives = 219/285 (76%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGAS RRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQP+PLRRI
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPIPLRRI 120
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 716
LAP PDSF ARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD
Sbjct: 121 LAP-GEEENLEFEEDEEGGAGAGPPDSFSARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 179
Query: 717 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIF 896
AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVE+LTKGAAIF
Sbjct: 180 AGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVERLTKGAAIF 239
Query: 897 FEFNTTSLKKGLPAPSVLLLWRWMKSDLGPSS*NYTRNPLTFKER 1031
FEF KK + + GP + P FK +
Sbjct: 240 FEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRK 284
Score = 129 bits (325), Expect = 4e-30
Identities = 60/75 (80%), Positives = 67/75 (89%)
Frame = +2
Query: 869 KINQRCSYFL*IQHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDF*RKKLQLLT 1048
++ + + F +HYKPKKRFTSTKCFAFMEMDEI+PGPIVIELYKKPTDF RKKLQLLT
Sbjct: 231 RLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLT 290
Query: 1049 KKPLYLHLHQTLHKE 1093
KKPLYLHLHQ+LHKE
Sbjct: 291 KKPLYLHLHQSLHKE 305
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,309,424
Number of extensions: 754048
Number of successful extensions: 1707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1706
Number of HSP's successfully gapped: 2
Length of query: 407
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 303
Effective length of database: 12,493,815
Effective search space: 3785625945
Effective search space used: 3785625945
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002918
(1221 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130561.2| PREDICTED: axin interactor, dorsalization-as... 315 4e-86
>ref|XP_003130561.2| PREDICTED: axin interactor, dorsalization-associated protein-like
[Sus scrofa].
Length = 211
Score = 315 bits (806), Expect = 4e-86
Identities = 163/198 (82%), Positives = 164/198 (82%)
Frame = +3
Query: 177 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 356
MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK
Sbjct: 1 MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQK 60
Query: 357 KTIGKIATCLELRSAALQSTQSQXXXXXXXXXXXXPILKNILTYNKEFPFDVQPVPLRRI 536
KTIGKIATCLELRSAALQSTQSQ PILKNILTYNKEFPFDVQPVPLRRI
Sbjct: 61 KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRI 120
Query: 537 LAPXXXXXXXXXXXXXXXXXXXXXPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 716
LAP PDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD
Sbjct: 121 LAPGEEENLEIEDDEDEGGAGAGAPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKD 180
Query: 717 AGQCIDPYITVSVKDLNG 770
AGQCIDPYITVSVKD+ G
Sbjct: 181 AGQCIDPYITVSVKDVEG 198
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,544,270
Number of extensions: 556715
Number of successful extensions: 1363
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,829,335
Effective search space: 2701776510
Effective search space used: 2701776510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002918
(1221 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 561 e-157
>Sscrofa_Chr10
|| Length = 79102373
Score = 561 bits (283), Expect = e-157
Identities = 283/283 (100%)
Strand = Plus / Minus
Query: 4 aaagtttggctgtggcggcaaatgggcttgggcggctccttggcgggtggcggcggtggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13621301 aaagtttggctgtggcggcaaatgggcttgggcggctccttggcgggtggcggcggtggc 13621242
Query: 64 cgtagcggttcctcccggccctgttaatgtcggggccaggcccggggaggatggcgccct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13621241 cgtagcggttcctcccggccctgttaatgtcggggccaggcccggggaggatggcgccct 13621182
Query: 124 agagcccggccttgctggggcaggggcgggaggggacggggtgggcaccggccatgtcgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13621181 agagcccggccttgctggggcaggggcgggaggggacggggtgggcaccggccatgtcgg 13621122
Query: 184 aggtgacccggagcctgctgcagcgctggggcgccagcttcaggcgaggcgccgacttcg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13621121 aggtgacccggagcctgctgcagcgctggggcgccagcttcaggcgaggcgccgacttcg 13621062
Query: 244 actcctggggccagctggtggaggcgatagacgaatatcagat 286
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13621061 actcctggggccagctggtggaggcgatagacgaatatcagat 13621019
Score = 353 bits (178), Expect = 1e-94
Identities = 211/222 (95%)
Strand = Plus / Minus
Query: 1000 atacaagaaacccactgacttttaaagaaagaaactgcagttattgaccaagaaaccact 1059
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13587065 atacaagaaacccactgactttaaaagaaagaaactgcagttattgaccaagaaaccact 13587006
Query: 1060 ttatcttcatctacatcagactttgcacaaggaatgatcccgacatgagtgacctggacg 1119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13587005 ttatcttcatctacatcagactttgcacaaggaatgatcctgacatgagtgacctggacg 13586946
Query: 1120 tctgtgaatctccccctccgttgaaactgtcacagctctgtgtagcatagtcacccttca 1179
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13586945 tctgtgaatctccccctcagttgagactgtcacagctctgtgtagcatagtcacccttca 13586886
Query: 1180 ccaggccagacgccagccgcacccggcaacgaacgcaggccg 1221
||||| ||||| ||||||||||||| |||||||| ||||
Sbjct: 13586885 gcaggcaggacgcaggccgcacccggcagcgaacgcacgccg 13586844
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 758 agatctgaatggcatagatttaactcctgtgcaggacactcctgtggcttcgagaaaaga 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13589848 agatctgaatggcatagatttaactcctgtgcaggacactcctgtggcttcgagaaaaga 13589789
Query: 818 agatacatacgttcatttcaatgtggacattgagctccagaagcatgttgaaaaattaac 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13589788 agatacatacgttcatttcaatgtggacattgagctccagaagcatgttgaaaaattaac 13589729
Query: 878 caaaggt 884
|||||||
Sbjct: 13589728 caaaggt 13589722
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 636 ggtaccttattaccaaggttgccgtctgaaccaggaatgaccttactcactatcagaatt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13592274 ggtaccttattaccaaggttgccgtctgaaccaggaatgaccttactcactatcagaatt 13592215
Query: 696 gagaaaattggcctgaaagatgccgggcagtgcattgatccctatatcacagttagtgtg 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13592214 gagaaaattggcctgaaagatgccgggcagtgcattgatccctatatcacagttagtgtg 13592155
Query: 756 aaag 759
||||
Sbjct: 13592154 aaag 13592151
Score = 204 bits (103), Expect = 8e-50
Identities = 109/111 (98%)
Strand = Plus / Minus
Query: 528 agaagaattttagcaccaggtgaagaagagaatttggaaattgaagacgacgaagacgag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13600857 agaagaattttagcaccaggtgaagaagagaatttggaaattgaagacgacgaagacgag 13600798
Query: 588 ggtggtgctggagcaggggctccggattcctttcctgctagagttcctggt 638
|||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13600797 ggtggtgccggagcgggggctccggattcctttcctgctagagttcctggt 13600747
Score = 180 bits (91), Expect = 1e-42
Identities = 112/120 (93%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 881 aggtgcagctattttctttgaattcaa-cactacaagcctnnnnnnnggtttaccagcac 939
||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 13587295 aggtgcagctattttctttgaattcaaacactacaagcctaaaaaaaggtttaccagcac 13587236
Query: 940 caagtgttttgcttttatggagatggatgaaatcagacctgggcccatcgtcatagaact 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13587235 caagtgttttgcttttatggagatggatgaaatcagacctgggcccatcgtcatagaact 13587176
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 287 attagcaagacacctacaaaaggaggcccaagctcaacataataattctgaattcacaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13614140 attagcaagacacctacaaaaggaggcccaagctcaacataataattctgaattcacaga 13614081
Query: 347 agaacaaaag 356
||||||||||
Sbjct: 13614080 agaacaaaag 13614071
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 466 tcctaaagaacattcttacatataacaaagaattcccatttgatgttcagcctgtcccct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13601159 tcctaaagaacattcttacatataacaaagaattcccatttgatgttcagcctgtcccct 13601100
Query: 526 tgag 529
||||
Sbjct: 13601099 tgag 13601096
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 408 cagtccacacagtcccaagaagaatttaaactggaggatctgaagaagctagaaccaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13605421 cagtccacacagtcccaagaagaatttaaactggaggatctgaagaagctagaaccaa 13605364
Score = 111 bits (56), Expect = 9e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 355 agaaaaccataggcaaaattgcaacatgcttggaattacgaagtgcagctttacag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13605872 agaaaaccataggcaaaattgcaacatgcttggaattacgaagtgcagctttacag 13605817
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,623,192
Number of extensions: 301
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 10
Length of query: 1221
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1200
Effective length of database: 2,808,413,156
Effective search space: 3370095787200
Effective search space used: 3370095787200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)