Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002922
(1227 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032704.1| tubulin gamma-2 chain [Bos taurus]. 622 0.0
Alignment gi|NP_001069723.1| tubulin gamma-1 chain [Bos taurus]. 622 0.0
Alignment gi|XP_001790481.1| PREDICTED: tubulin gamma-1 chain-like isofor... 622 0.0
Alignment gi|NP_001029835.1| tubulin beta-2C chain [Bos taurus]. 227 1e-59
Alignment gi|NP_001040014.1| tubulin beta-5 chain [Bos taurus]. 227 2e-59
Alignment gi|NP_001029869.1| tubulin beta-4 chain [Bos taurus]. 226 4e-59
Alignment gi|NP_001003900.1| tubulin beta-2B chain [Bos taurus]. 225 5e-59
Alignment gi|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus]. 225 7e-59
Alignment gi|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus]. 225 7e-59
Alignment gi|NP_001039838.1| tubulin beta-6 chain [Bos taurus]. 223 3e-58
>ref|NP_001032704.1| tubulin gamma-2 chain [Bos taurus].
Length = 451
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 310/325 (95%), Positives = 310/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|NP_001069723.1| tubulin gamma-1 chain [Bos taurus].
Length = 451
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 310/325 (95%), Positives = 310/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|XP_001790481.1| PREDICTED: tubulin gamma-1 chain-like isoform 2 [Bos taurus].
Length = 451
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 310/325 (95%), Positives = 310/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|NP_001029835.1| tubulin beta-2C chain [Bos taurus].
Length = 445
Score = 227 bits (579), Expect = 1e-59
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001040014.1| tubulin beta-5 chain [Bos taurus].
Length = 444
Score = 227 bits (578), Expect = 2e-59
Identities = 113/305 (37%), Positives = 181/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQVFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001029869.1| tubulin beta-4 chain [Bos taurus].
Length = 444
Score = 226 bits (575), Expect = 4e-59
Identities = 113/305 (37%), Positives = 183/305 (60%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A +Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001003900.1| tubulin beta-2B chain [Bos taurus].
Length = 445
Score = 225 bits (574), Expect = 5e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].
Length = 445
Score = 225 bits (573), Expect = 7e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].
Length = 445
Score = 225 bits (573), Expect = 7e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001039838.1| tubulin beta-6 chain [Bos taurus].
Length = 446
Score = 223 bits (568), Expect = 3e-58
Identities = 111/305 (36%), Positives = 181/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ ++ + Y+P
Sbjct: 2 REIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA L+DLEP + S+ + P+ +L+ P+N + G AGNNWA G +++G ++ + + D+
Sbjct: 62 RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTG--AGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
+LR+PG +N DL L +++P PRLHF M G+ PLT S R TV ++ +++ K
Sbjct: 239 SLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,859,930
Number of extensions: 1173434
Number of successful extensions: 5247
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 5146
Number of HSP's successfully gapped: 48
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002922
(1227 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548085.2| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 622 0.0
Alignment gi|XP_858339.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 617 0.0
Alignment gi|NP_001003105.1| tubulin gamma-1 chain [Canis lupus familiari... 617 0.0
Alignment gi|XP_858298.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 602 0.0
Alignment gi|XP_858259.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 291 e-108
Alignment gi|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 227 2e-59
Alignment gi|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 227 2e-59
Alignment gi|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis fa... 227 2e-59
Alignment gi|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [... 226 4e-59
Alignment gi|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [... 226 4e-59
>ref|XP_548085.2| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 1
[Canis familiaris].
Length = 451
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 310/325 (95%), Positives = 310/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|XP_858339.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 4
[Canis familiaris].
Length = 480
Score = 617 bits (1592), Expect(2) = 0.0
Identities = 310/327 (94%), Positives = 310/327 (94%), Gaps = 2/327 (0%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQS--VASVRKTTVLDVMRRLL 968
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQS VASVRKTTVLDVMRRLL
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVGVASVRKTTVLDVMRRLL 300
Query: 969 QPKNVMVSTGRDRQTNHCYIAILNIIQ 1049
QPKNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 QPKNVMVSTGRDRQTNHCYIAILNIIQ 327
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 328 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 386
>ref|NP_001003105.1| tubulin gamma-1 chain [Canis lupus familiaris].
Length = 451
Score = 617 bits (1590), Expect(2) = 0.0
Identities = 307/325 (94%), Positives = 308/325 (94%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNT LNRIAT+RLHIQNPSF QINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|XP_858298.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 3
[Canis familiaris].
Length = 482
Score = 602 bits (1552), Expect(2) = 0.0
Identities = 310/356 (87%), Positives = 310/356 (87%), Gaps = 31/356 (8%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQL--------- 767
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQL
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSPHSWTRW 240
Query: 768 --------------------VSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMT 887
VSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMT
Sbjct: 241 AGTPPCWSATSGREPHPTPQVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMT 300
Query: 888 GYTPLTTDQS--VASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQ 1049
GYTPLTTDQS VASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 GYTPLTTDQSVGVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQ 356
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 357 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 415
>ref|XP_858259.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 2
[Canis familiaris].
Length = 274
Score = 291 bits (745), Expect(2) = e-108
Identities = 148/148 (100%), Positives = 148/148 (100%)
Frame = +3
Query: 606 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 785
MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS
Sbjct: 1 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 60
Query: 786 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRL 965
ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRL
Sbjct: 61 ASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRL 120
Query: 966 LQPKNVMVSTGRDRQTNHCYIAILNIIQ 1049
LQPKNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 121 LQPKNVMVSTGRDRQTNHCYIAILNIIQ 148
Score = 120 bits (300), Expect(2) = e-108
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 149 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 207
>ref|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform 3 [Canis
familiaris].
Length = 416
Score = 227 bits (579), Expect = 2e-59
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform 1 [Canis
familiaris].
Length = 445
Score = 227 bits (579), Expect = 2e-59
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis familiaris].
Length = 444
Score = 227 bits (578), Expect = 2e-59
Identities = 113/305 (37%), Positives = 181/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQVFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [Canis familiaris].
Length = 445
Score = 226 bits (575), Expect = 4e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [Canis familiaris].
Length = 445
Score = 226 bits (575), Expect = 4e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,734,391
Number of extensions: 1209594
Number of successful extensions: 5612
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 5424
Number of HSP's successfully gapped: 127
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002922
(1227 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001061.2| tubulin gamma-1 chain [Homo sapiens]. 622 0.0
Alignment gi|NP_057521.1| tubulin gamma-2 chain [Homo sapiens]. 619 0.0
Alignment gi|NP_006079.1| tubulin beta-2C chain [Homo sapiens]. 227 1e-59
Alignment gi|NP_821133.1| tubulin beta chain [Homo sapiens]. 227 2e-59
Alignment gi|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens]. 226 3e-59
Alignment gi|NP_821080.1| tubulin beta-2B chain [Homo sapiens]. 226 4e-59
Alignment gi|NP_006078.2| tubulin beta-4 chain [Homo sapiens]. 226 4e-59
Alignment gi|NP_001060.1| tubulin beta-2A chain [Homo sapiens]. 225 7e-59
Alignment gi|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens]. 222 6e-58
Alignment gi|NP_115914.1| tubulin beta-6 chain [Homo sapiens]. 220 2e-57
>ref|NP_001061.2| tubulin gamma-1 chain [Homo sapiens].
Length = 451
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 310/325 (95%), Positives = 310/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|NP_057521.1| tubulin gamma-2 chain [Homo sapiens].
Length = 451
Score = 619 bits (1597), Expect(2) = 0.0
Identities = 309/325 (95%), Positives = 309/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFP QDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|NP_006079.1| tubulin beta-2C chain [Homo sapiens].
Length = 445
Score = 227 bits (579), Expect = 1e-59
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_821133.1| tubulin beta chain [Homo sapiens].
Length = 444
Score = 227 bits (578), Expect = 2e-59
Identities = 113/305 (37%), Positives = 181/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQVFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].
Length = 444
Score = 226 bits (576), Expect = 3e-59
Identities = 112/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ Q+GQCGNQIG +FW+ + EH I G + +R +V++ +A Y+P
Sbjct: 2 REIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + G AGNNWA G +++G ++ E + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCG--AGNNWAKGHYTEGAELMESVMDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+S+ P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +NAD +DN AL I + L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVAELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_821080.1| tubulin beta-2B chain [Homo sapiens].
Length = 445
Score = 226 bits (575), Expect = 4e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_006078.2| tubulin beta-4 chain [Homo sapiens].
Length = 444
Score = 226 bits (575), Expect = 4e-59
Identities = 113/305 (37%), Positives = 183/305 (60%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A +Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001060.1| tubulin beta-2A chain [Homo sapiens].
Length = 445
Score = 225 bits (573), Expect = 7e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].
Length = 450
Score = 222 bits (565), Expect = 6e-58
Identities = 111/305 (36%), Positives = 178/305 (58%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + + L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
+LR+PG +N DL L +++P PRLHF M G+ PLT S R TV ++ +++ K
Sbjct: 239 SLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_115914.1| tubulin beta-6 chain [Homo sapiens].
Length = 446
Score = 220 bits (560), Expect = 2e-57
Identities = 109/305 (35%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ ++ + Y+P
Sbjct: 2 REIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA L+DLEP + S+ + P+ +L+ P+N + G AGNNWA G +++G ++ + + D+
Sbjct: 62 RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTG--AGNNWAKGHYTEGAELVDAVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E + D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
+LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ +
Sbjct: 239 SLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAR 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,821,811
Number of extensions: 1180388
Number of successful extensions: 5299
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 5199
Number of HSP's successfully gapped: 42
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002922
(1227 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598785.1| tubulin gamma-1 chain [Mus musculus]. 617 0.0
Alignment gi|NP_598789.1| tubulin gamma-2 chain [Mus musculus]. 616 0.0
Alignment gi|NP_666228.1| tubulin beta-2C chain [Mus musculus]. 227 1e-59
Alignment gi|NP_035785.1| tubulin beta-5 chain [Mus musculus]. 227 2e-59
Alignment gi|NP_033477.2| tubulin beta-4 chain [Mus musculus]. 226 4e-59
Alignment gi|NP_076205.1| tubulin beta-2B chain [Mus musculus]. 226 4e-59
Alignment gi|NP_033476.1| tubulin beta-2A chain [Mus musculus]. 225 6e-59
Alignment gi|NP_075768.1| tubulin beta-3 chain [Mus musculus]. 222 5e-58
Alignment gi|NP_080749.2| tubulin beta-6 chain [Mus musculus]. 219 3e-57
Alignment gi|NP_001074440.1| tubulin, beta 1 [Mus musculus]. 218 6e-57
>ref|NP_598785.1| tubulin gamma-1 chain [Mus musculus].
Length = 451
Score = 617 bits (1590), Expect(2) = 0.0
Identities = 308/325 (94%), Positives = 308/325 (94%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNS YAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALN IATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|NP_598789.1| tubulin gamma-2 chain [Mus musculus].
Length = 451
Score = 616 bits (1588), Expect(2) = 0.0
Identities = 307/325 (94%), Positives = 307/325 (94%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNS YAKLYNPENIYLSEHGGGAGNNW GFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|NP_666228.1| tubulin beta-2C chain [Mus musculus].
Length = 445
Score = 227 bits (579), Expect = 1e-59
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_035785.1| tubulin beta-5 chain [Mus musculus].
Length = 444
Score = 227 bits (578), Expect = 2e-59
Identities = 113/305 (37%), Positives = 181/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQVFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_033477.2| tubulin beta-4 chain [Mus musculus].
Length = 444
Score = 226 bits (575), Expect = 4e-59
Identities = 113/305 (37%), Positives = 183/305 (60%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A +Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_076205.1| tubulin beta-2B chain [Mus musculus].
Length = 445
Score = 226 bits (575), Expect = 4e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_033476.1| tubulin beta-2A chain [Mus musculus].
Length = 445
Score = 225 bits (573), Expect = 6e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_075768.1| tubulin beta-3 chain [Mus musculus].
Length = 450
Score = 222 bits (565), Expect = 5e-58
Identities = 111/305 (36%), Positives = 178/305 (58%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + + L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
+LR+PG +N DL L +++P PRLHF M G+ PLT S R TV ++ +++ K
Sbjct: 239 SLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_080749.2| tubulin beta-6 chain [Mus musculus].
Length = 447
Score = 219 bits (558), Expect = 3e-57
Identities = 110/305 (36%), Positives = 179/305 (58%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R V++ ++ + Y+P
Sbjct: 2 REIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA L+DLEP + S+ + P+ +L+ P+N + G AGNNWA G +++G ++ + + D+
Sbjct: 62 RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTG--AGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
+LR+PG +N DL L +++P PRLHF M G+ PLT S R TV ++ +++ K
Sbjct: 239 SLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001074440.1| tubulin, beta 1 [Mus musculus].
Length = 451
Score = 218 bits (556), Expect = 6e-57
Identities = 112/306 (36%), Positives = 183/306 (59%), Gaps = 2/306 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q+GQCGNQIG +FW+ + EHGI G + +R V++ +A + Y+P
Sbjct: 2 REIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGG-GAGNNWASG-FSQGEKIHEDIFD 434
RAVL+DLEP + SI +S L+ P++ HG GAGNNWA G +++G ++ E++ D
Sbjct: 62 RAVLVDLEPGTMDSIRSSRLGVLFQPDSFV---HGNSGAGNNWAKGHYTEGAELIENVMD 118
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
++ RE++ D L+GF + H ++ + YP +++ ++SV P+ ++SD
Sbjct: 119 VVRRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSP-KVSD 177
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VV+PYN++L++ +L +N D +DN AL I L + P++ +N LVS MS T
Sbjct: 178 TVVEPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGIT 237
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
T+LR+PG +N DL L +++P PRLHF M G+ PLT Q R +V ++ +++
Sbjct: 238 TSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-QGSQQYRALSVAELTQQMFDA 296
Query: 975 KNVMVS 992
+N+M +
Sbjct: 297 RNIMAA 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,946,028
Number of extensions: 974041
Number of successful extensions: 4072
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3976
Number of HSP's successfully gapped: 41
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002922
(1227 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131431.1| PREDICTED: tubulin gamma-1 chain-like [Sus s... 622 0.0
Alignment gi|XP_003131444.2| PREDICTED: tubulin gamma-1 chain-like [Sus s... 387 e-108
Alignment gi|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus s... 227 9e-60
Alignment gi|NP_001038077.1| tubulin beta chain [Sus scrofa]. 227 1e-59
Alignment gi|NP_001230363.1| tubulin beta-2B chain [Sus scrofa]. 226 3e-59
Alignment gi|NP_001107168.1| tubulin beta-1 chain [Sus scrofa]. 221 6e-58
Alignment gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof... 183 3e-49
Alignment gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ... 181 2e-48
Alignment gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa]. 180 3e-48
Alignment gi|XP_003131442.2| PREDICTED: tubulin gamma-2 chain-like [Sus s... 120 1e-47
>ref|XP_003131431.1| PREDICTED: tubulin gamma-1 chain-like [Sus scrofa].
Length = 451
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 310/325 (95%), Positives = 310/325 (95%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 300
Query: 975 KNVMVSTGRDRQTNHCYIAILNIIQ 1049
KNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 301 KNVMVSTGRDRQTNHCYIAILNIIQ 325
Score = 120 bits (300), Expect(2) = 0.0
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 384
>ref|XP_003131444.2| PREDICTED: tubulin gamma-1 chain-like [Sus scrofa].
Length = 273
Score = 387 bits (995), Expect = e-108
Identities = 189/205 (92%), Positives = 190/205 (92%)
Frame = +3
Query: 75 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 254
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 434
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVL 689
VVVQPYNSLLTLKRLTQNADCV+VL
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVLVL 205
>ref|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus scrofa].
Length = 445
Score = 227 bits (579), Expect = 9e-60
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001038077.1| tubulin beta chain [Sus scrofa].
Length = 444
Score = 227 bits (578), Expect = 1e-59
Identities = 113/305 (37%), Positives = 181/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQVFDAK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].
Length = 445
Score = 226 bits (575), Expect = 3e-59
Identities = 111/305 (36%), Positives = 182/305 (59%), Gaps = 1/305 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 437
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 438 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 617
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDT 178
Query: 618 VVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 797
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 798 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 977
LR+PG +N DL L +++P PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSK 297
Query: 978 NVMVS 992
N+M +
Sbjct: 298 NMMAA 302
>ref|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].
Length = 449
Score = 221 bits (563), Expect = 6e-58
Identities = 115/306 (37%), Positives = 181/306 (59%), Gaps = 2/306 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 260
REI+ +Q+GQCGNQIG +FW+ + EHGI G + +R V++ +A + Y+P
Sbjct: 2 REIVHIQIGQCGNQIGSKFWEVIGEEHGIDGAGSYRGDCSVQLERISVYYNEAHGKKYVP 61
Query: 261 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGG-GAGNNWASG-FSQGEKIHEDIFD 434
RAVL+DLEP + SI +S L+ P++ HG GAGNNWA G +++G ++ E + D
Sbjct: 62 RAVLVDLEPGTMDSIRSSRLGALFRPDSFV---HGNSGAGNNWAKGHYTEGAELVEGVLD 118
Query: 435 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 614
+ EA+G D L+GF + H ++ + +P +++ ++SV P+ ++SD
Sbjct: 119 AVRSEAEGCDCLQGFQVVHSLGGGTGSGMGTLLMGKIREEFPDRILNSFSVMPSA-KVSD 177
Query: 615 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 794
VV+PYN++L++ +L QNAD +DN AL I L + P++ +N LVS MS T
Sbjct: 178 TVVEPYNAVLSIHQLLQNADACFCIDNEALYDICCRTLRLTTPTYGDLNHLVSLTMSGVT 237
Query: 795 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP 974
T+LR+PG +N DL L +++P PRLHF M G+ PLT Q R TV ++ +++
Sbjct: 238 TSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-QGSQQYRALTVAELTQQMFDA 296
Query: 975 KNVMVS 992
+N M +
Sbjct: 297 RNTMTA 302
>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
Length = 448
Score = 183 bits (465), Expect(2) = 3e-49
Identities = 104/306 (33%), Positives = 170/306 (55%), Gaps = 3/306 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 254
RE I++ +GQ G Q+G W+ C EHGI P+G + T G D FF + +
Sbjct: 2 RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKH 61
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 431
+PRAV +DLEP VI I N PY +L++PE + + A NN+A G ++ G++I + +
Sbjct: 62 VPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKED--AANNYARGHYTIGKEIIDPVL 119
Query: 432 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 611
D I + +D L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 612 DVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 791
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+S I+S+
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
Query: 792 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 971
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK-AYHEQLSVAEITNACFE 297
Query: 972 PKNVMV 989
P N MV
Sbjct: 298 PANQMV 303
Score = 30.8 bits (68), Expect(2) = 3e-49
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSP 1170
G+V P V+ ++ I+ ++ F+ W P +VG++ + P
Sbjct: 321 GDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360
>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
Length = 449
Score = 181 bits (458), Expect(2) = 2e-48
Identities = 104/306 (33%), Positives = 169/306 (55%), Gaps = 3/306 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 254
RE I++ +GQ G QIG W+ C EHGI P+G + T G D + FF + +
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 431
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIIDLVL 119
Query: 432 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 611
D I + AD L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 612 DVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 791
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+S I+S+
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSI 238
Query: 792 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 971
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + TV ++ +
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK-AYHEQLTVAEITNACFE 297
Query: 972 PKNVMV 989
P N MV
Sbjct: 298 PANQMV 303
Score = 30.8 bits (68), Expect(2) = 2e-48
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSP 1170
G+V P V+ ++ I+ ++ F+ W P +VG++ + P
Sbjct: 321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
Length = 451
Score = 180 bits (456), Expect(2) = 3e-48
Identities = 103/306 (33%), Positives = 169/306 (55%), Gaps = 3/306 (0%)
Frame = +3
Query: 81 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 254
RE I++ +GQ G QIG W+ C EHGI P+G + T G D + FF + +
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 255 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 431
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIIDLVL 119
Query: 432 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 611
D I + AD L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 612 DVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 791
VV+PYNS+LT +++DC ++DN A+ I L I+ P+++ +N+L+S I+S+
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
Query: 792 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 971
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK-AYHEQLSVAEITNACFE 297
Query: 972 PKNVMV 989
P N MV
Sbjct: 298 PANQMV 303
Score = 30.8 bits (68), Expect(2) = 3e-48
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSP 1170
G+V P V+ ++ I+ ++ F+ W P +VG++ + P
Sbjct: 321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
>ref|XP_003131442.2| PREDICTED: tubulin gamma-2 chain-like [Sus scrofa].
Length = 177
Score = 120 bits (300), Expect(2) = 1e-47
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1051 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVGLSRKSPYLPSAHRVSGLMMANHTSI 1227
GEVDPTQVHKSLQRIRERKLANFIPWGPASIQV LSRKSPYLPSAHRVSGLMMANHTSI
Sbjct: 52 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSI 110
Score = 89.0 bits (219), Expect(2) = 1e-47
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3
Query: 918 VASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQ 1049
VASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQ
Sbjct: 8 VASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQ 51
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,658,394
Number of extensions: 757426
Number of successful extensions: 3333
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3268
Number of HSP's successfully gapped: 43
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002922
(1227 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 341 6e-91
>Sscrofa_Chr12
|| Length = 63588571
Score = 341 bits (172), Expect = 6e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 234 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388699 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 20388640
Query: 294 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388639 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 20388580
Query: 354 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388579 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 20388528
Score = 341 bits (172), Expect = 6e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 234 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432589 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 20432530
Query: 294 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432529 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 20432470
Query: 354 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432469 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 20432418
Score = 311 bits (157), Expect = 5e-82
Identities = 160/161 (99%)
Strand = Plus / Minus
Query: 1067 cccaggtccacaagagcctgcagcggatccgggaacggaagctggccaacttcatcccct 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20428410 cccaggtccacaagagcctgcagcggatccgggaacggaagctggccaacttcatcccct 20428351
Query: 1127 ggggcccagccagcatccaggtgggcctgtcgaggaagtcgccctacctgccttctgccc 1186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 20428350 ggggcccagccagcatccaggtggccctgtcgaggaagtcgccctacctgccttctgccc 20428291
Query: 1187 acagggtcagtgggctcatgatggccaaccacaccagcatc 1227
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 20428290 acagggtcagtgggctcatgatggccaaccacaccagcatc 20428250
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 767 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20363037 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 20363096
Query: 827 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttcctcatgac 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20363097 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttcctcatgac 20363156
Query: 887 cggctacaccccgctcaccacggaccagtcggt 919
|||||||||||||||||||||||||||||||||
Sbjct: 20363157 cggctacaccccgctcaccacggaccagtcggt 20363189
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 767 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20429205 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 20429146
Query: 827 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttcctcatgac 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20429145 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttcctcatgac 20429086
Query: 887 cggctacaccccgctcaccacggaccagtcggt 919
|||||||||||||||||||||||||||||||||
Sbjct: 20429085 cggctacaccccgctcaccacggaccagtcggt 20429053
Score = 295 bits (149), Expect = 3e-77
Identities = 156/157 (99%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 917 ggtggccagcgtgaggaagaccacggtcctggacgtcatgaggcggctgctgcagcccaa 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20363600 ggtggccagcgtgaggaagaccacggtcctggacgtcatgaggcggctgctgcagcccaa 20363659
Query: 977 gaacgtgatggtgtccacaggccgggatcgccagaccaaccactgctacatcgccatcct 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20363660 gaacgtgatggtgtccacaggccgggatcgccagaccaaccactgctacatcgccatcct 20363719
Query: 1037 caacatcatccaggggggaggtggaccccacccaggt 1073
|||||||||||| ||||||||||||||||||||||||
Sbjct: 20363720 caacatcatcca-gggggaggtggaccccacccaggt 20363755
Score = 295 bits (149), Expect = 3e-77
Identities = 158/161 (98%)
Strand = Plus / Plus
Query: 1067 cccaggtccacaagagcctgcagcggatccgggaacggaagctggccaacttcatcccct 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20363832 cccaggtccacaagagcctgcagcggatccgggaacggaagctggccaacttcatcccct 20363891
Query: 1127 ggggcccagccagcatccaggtgggcctgtcgaggaagtcgccctacctgccttctgccc 1186
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 20363892 ggggcccagccagcatccaggtggccctgtcaaggaagtcgccctacctgccttctgccc 20363951
Query: 1187 acagggtcagtgggctcatgatggccaaccacaccagcatc 1227
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 20363952 acagggtcagcgggctcatgatggccaaccacaccagcatc 20363992
Score = 295 bits (149), Expect = 3e-77
Identities = 156/157 (99%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 917 ggtggccagcgtgaggaagaccacggtcctggacgtcatgaggcggctgctgcagcccaa 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20428642 ggtggccagcgtgaggaagaccacggtcctggacgtcatgaggcggctgctgcagcccaa 20428583
Query: 977 gaacgtgatggtgtccacaggccgggatcgccagaccaaccactgctacatcgccatcct 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20428582 gaacgtgatggtgtccacaggccgggatcgccagaccaaccactgctacatcgccatcct 20428523
Query: 1037 caacatcatccaggggggaggtggaccccacccaggt 1073
||||||||||||| |||||||||||||||||||||||
Sbjct: 20428522 caacatcatccag-ggggaggtggaccccacccaggt 20428487
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 551 caggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387243 caggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgag 20387184
Query: 611 cgatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387183 cgatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgc 20387124
Query: 671 agactgtgtggt 682
||||||||||||
Sbjct: 20387123 agactgtgtggt 20387112
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 552 aggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgagc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20430024 aggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgagc 20429965
Query: 612 gatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20429964 gatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgca 20429905
Query: 672 gactgtgtggtg 683
||||||||||||
Sbjct: 20429904 gactgtgtggtg 20429893
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1 gtcgtgctgctagcgggctagcgagtggcggctttgctggcgggagctgctgcaaggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20433351 gtcgtgctgctagcgggctagcgagtggcggctttgctggcgggagctgctgcaaggccc 20433292
Query: 61 gcgcctgaggagcgatgccgagggagatcatcaccctacagttgggccagtgcggcaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20433291 gcgcctgaggagcgatgccgagggagatcatcaccctacagttgggccagtgcggcaatc 20433232
Query: 121 aga 123
|||
Sbjct: 20433231 aga 20433229
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 124 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389014 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 20388955
Query: 184 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388954 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 20388901
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 124 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432903 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 20432844
Query: 184 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432843 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 20432790
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 680 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20362812 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 20362871
Query: 740 cccgtccttctcccagatcaaccagctggtg 770
|||||||||||||||||||||||||||||||
Sbjct: 20362872 cccgtccttctcccagatcaaccagctggtg 20362902
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 680 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20429425 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 20429366
Query: 740 cccgtccttctcccagatcaaccagctggtg 770
|||||||||||||||||||||||||||||||
Sbjct: 20429365 cccgtccttctcccagatcaaccagctggtg 20429335
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 472 agggcttcgtgctgtgtcactccattgctgggggaacaggctctggcctgggctcctacc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20430539 agggcttcgtgctgtgtcactccattgctgggggaacaggctctggcctgggctcctacc 20430480
Query: 532 tcttagaacggctcaacgacaggt 555
||||||||||||||||||||||||
Sbjct: 20430479 tcttagaacggctcaacgacaggt 20430456
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 402 cagggagagaagatccatgaggacatttttgacatcatagaccgggaggcagatggcagt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20430891 cagggagagaagatccatgaggacatttttgacatcatagaccgggaggcagatggcagt 20430832
Query: 462 gacagtctagagg 474
|||||||||||||
Sbjct: 20430831 gacagtctagagg 20430819
Score = 81.8 bits (41), Expect = 8e-13
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 472 agggcttcgtgctgtgtcactccattgctgggggaacaggctctggcctgggctcctacc 531
||||||||||||||||||| ||||| |||||||| || || |||||||| ||||||||||
Sbjct: 20387725 agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 20387666
Query: 532 tcttagaacggctcaacgacaggta 556
|||| || || || || ||||||||
Sbjct: 20387665 tcttggagcgtctgaatgacaggta 20387641
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 65 ctgaggagcgatgccgagggagatcatcaccctacagttgggccagtgcggcaatcaga 123
|||| ||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 20389381 ctgaagagcgatgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 20389323
Score = 65.9 bits (33), Expect = 5e-08
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 402 cagggagagaagatccatgaggacatttttgacatcatagaccgggaggcagatggcagt 461
||||| ||||| |||||||| ||||| ||||| ||||||||||| || |||||||| |||
Sbjct: 20388223 cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 20388164
Query: 462 gacag 466
|||||
Sbjct: 20388163 gacag 20388159
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,154,231
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 20
Length of query: 1227
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1206
Effective length of database: 2,808,413,156
Effective search space: 3386946266136
Effective search space used: 3386946266136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)