Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002923
(1043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032704.1| tubulin gamma-2 chain [Bos taurus]. 391 e-109
Alignment gi|NP_001069723.1| tubulin gamma-1 chain [Bos taurus]. 391 e-109
Alignment gi|XP_001790481.1| PREDICTED: tubulin gamma-1 chain-like isofor... 391 e-109
Alignment gi|NP_001029835.1| tubulin beta-2C chain [Bos taurus]. 155 4e-42
Alignment gi|NP_001040014.1| tubulin beta-5 chain [Bos taurus]. 155 4e-42
Alignment gi|NP_001003900.1| tubulin beta-2B chain [Bos taurus]. 154 1e-41
Alignment gi|NP_001029869.1| tubulin beta-4 chain [Bos taurus]. 154 1e-41
Alignment gi|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus]. 153 2e-41
Alignment gi|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus]. 153 2e-41
Alignment gi|NP_001039838.1| tubulin beta-6 chain [Bos taurus]. 150 6e-41
>ref|NP_001032704.1| tubulin gamma-2 chain [Bos taurus].
Length = 451
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_001069723.1| tubulin gamma-1 chain [Bos taurus].
Length = 451
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|XP_001790481.1| PREDICTED: tubulin gamma-1 chain-like isoform 2 [Bos taurus].
Length = 451
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_001029835.1| tubulin beta-2C chain [Bos taurus].
Length = 445
Score = 155 bits (392), Expect(2) = 4e-42
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 4e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001040014.1| tubulin beta-5 chain [Bos taurus].
Length = 444
Score = 155 bits (392), Expect(2) = 4e-42
Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 4e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001003900.1| tubulin beta-2B chain [Bos taurus].
Length = 445
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001029869.1| tubulin beta-4 chain [Bos taurus].
Length = 444
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A +Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].
Length = 445
Score = 153 bits (387), Expect(2) = 2e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 2e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].
Length = 445
Score = 153 bits (387), Expect(2) = 2e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 2e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001039838.1| tubulin beta-6 chain [Bos taurus].
Length = 446
Score = 150 bits (380), Expect(2) = 6e-41
Identities = 70/199 (35%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ ++ + Y+P
Sbjct: 2 REIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA L+DLEP + S+ + P+ +L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQ--TGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.8 bits (81), Expect(2) = 6e-41
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,259,827
Number of extensions: 1200089
Number of successful extensions: 5962
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 5849
Number of HSP's successfully gapped: 62
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002923
(1043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858339.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 391 e-109
Alignment gi|XP_548085.2| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 391 e-109
Alignment gi|NP_001003105.1| tubulin gamma-1 chain [Canis lupus familiari... 389 e-108
Alignment gi|XP_858298.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga... 386 e-107
Alignment gi|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis fa... 158 7e-43
Alignment gi|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 155 5e-42
Alignment gi|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis fa... 155 5e-42
Alignment gi|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 155 5e-42
Alignment gi|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [... 154 1e-41
Alignment gi|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [... 154 1e-41
>ref|XP_858339.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 4
[Canis familiaris].
Length = 480
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|XP_548085.2| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 1
[Canis familiaris].
Length = 451
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_001003105.1| tubulin gamma-1 chain [Canis lupus familiaris].
Length = 451
Score = 389 bits (998), Expect = e-108
Identities = 204/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + +R P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|XP_858298.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
(Gamma-tubulin complex component 1) (GCP-1) isoform 3
[Canis familiaris].
Length = 482
Score = 386 bits (991), Expect = e-107
Identities = 208/307 (67%), Positives = 214/307 (69%), Gaps = 39/307 (12%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---------------------------GGAGQHSPEPD 878
VVVQPYNSLLTLKRLTQNADCV HS
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSPHSWTRW 240
Query: 879 RHRPPA---------HPKP---VLLPGSXAGVHHHVRQPHHPALPRLPEHELIGLIGSFI 1022
PP HP P ++ S + + P ++LIGLI S I
Sbjct: 241 AGTPPCWSATSGREPHPTPQVSTIMSASTTTLRY----------PGYMNNDLIGLIASLI 290
Query: 1023 PTPGFHF 1043
PTP HF
Sbjct: 291 PTPRLHF 297
>ref|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis familiaris].
Length = 576
Score = 158 bits (399), Expect(2) = 7e-43
Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 5/284 (1%)
Frame = +3
Query: 3 LRLCRVPAAAAEGKMMPRLGSQGRRPRGGPHCTRADRSPASKGEENARFPRPAHPAAKRX 182
LR + EGK P PRG R DR+P P+P P A +
Sbjct: 60 LRAAGLCQGQGEGKSDPAEVELSEAPRG-----RRDRAPPPPP------PQPRPPGAPQL 108
Query: 183 XXXXXXXXXXGWRAHV*RAMP----REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIV 350
RA A REI+ LQ GQCGNQIG +FW+ + EHGI P G
Sbjct: 109 PAPSSQLPAPSIRAAAAAAPSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTY 168
Query: 351 EEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG 530
+ +R +V++ +A +Y+PRAVL+DLEP + S+ + P+ +++ P+N +
Sbjct: 169 HGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-- 226
Query: 531 GGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXER 707
GAGNNWA G +++G ++ + + D++ +EA+ D L+GF L H +
Sbjct: 227 SGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK 286
Query: 708 LNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNAD 839
+ + +P +++ T+SV P+ ++SD VV+PYN+ L++ +L +N D
Sbjct: 287 IREEFPDRIMNTFSVVPS-PKVSDTVVEPYNATLSVHQLVENTD 329
Score = 35.0 bits (79), Expect(2) = 7e-43
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 334 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 381
>ref|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform 1 [Canis
familiaris].
Length = 445
Score = 155 bits (392), Expect(2) = 5e-42
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 5e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis familiaris].
Length = 444
Score = 155 bits (392), Expect(2) = 5e-42
Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 5e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform 3 [Canis
familiaris].
Length = 416
Score = 155 bits (392), Expect(2) = 5e-42
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 5e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [Canis familiaris].
Length = 445
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [Canis familiaris].
Length = 445
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,012,397
Number of extensions: 1234388
Number of successful extensions: 6001
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 5810
Number of HSP's successfully gapped: 136
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002923
(1043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001061.2| tubulin gamma-1 chain [Homo sapiens]. 391 e-109
Alignment gi|NP_057521.1| tubulin gamma-2 chain [Homo sapiens]. 388 e-108
Alignment gi|NP_006079.1| tubulin beta-2C chain [Homo sapiens]. 155 5e-42
Alignment gi|NP_821133.1| tubulin beta chain [Homo sapiens]. 155 5e-42
Alignment gi|NP_821080.1| tubulin beta-2B chain [Homo sapiens]. 154 1e-41
Alignment gi|NP_006078.2| tubulin beta-4 chain [Homo sapiens]. 154 1e-41
Alignment gi|NP_001060.1| tubulin beta-2A chain [Homo sapiens]. 153 2e-41
Alignment gi|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens]. 152 2e-41
Alignment gi|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens]. 149 1e-40
Alignment gi|NP_115914.1| tubulin beta-6 chain [Homo sapiens]. 148 3e-40
>ref|NP_001061.2| tubulin gamma-1 chain [Homo sapiens].
Length = 451
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_057521.1| tubulin gamma-2 chain [Homo sapiens].
Length = 451
Score = 388 bits (997), Expect = e-108
Identities = 204/274 (74%), Positives = 211/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFP QDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_006079.1| tubulin beta-2C chain [Homo sapiens].
Length = 445
Score = 155 bits (392), Expect(2) = 5e-42
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 5e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_821133.1| tubulin beta chain [Homo sapiens].
Length = 444
Score = 155 bits (392), Expect(2) = 5e-42
Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 5e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_821080.1| tubulin beta-2B chain [Homo sapiens].
Length = 445
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_006078.2| tubulin beta-4 chain [Homo sapiens].
Length = 444
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A +Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001060.1| tubulin beta-2A chain [Homo sapiens].
Length = 445
Score = 153 bits (387), Expect(2) = 2e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 2e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].
Length = 444
Score = 152 bits (383), Expect(2) = 2e-41
Identities = 71/199 (35%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ Q+GQCGNQIG +FW+ + EH I G + +R +V++ +A Y+P
Sbjct: 2 REIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ E + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQ--CGAGNNWAKGHYTEGAELMESVMDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+S+ P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +NAD
Sbjct: 179 VVEPYNATLSVHQLIENAD 197
Score = 36.6 bits (83), Expect(2) = 2e-41
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I + L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].
Length = 450
Score = 149 bits (377), Expect(2) = 1e-40
Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + + L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSIHQLVENTD 197
Score = 35.8 bits (81), Expect(2) = 1e-40
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249
>ref|NP_115914.1| tubulin beta-6 chain [Homo sapiens].
Length = 446
Score = 148 bits (374), Expect(2) = 3e-40
Identities = 69/199 (34%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ ++ + Y+P
Sbjct: 2 REIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA L+DLEP + S+ + P+ +L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQ--TGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E + D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.8 bits (81), Expect(2) = 3e-40
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,125,123
Number of extensions: 1205328
Number of successful extensions: 5817
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5676
Number of HSP's successfully gapped: 53
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002923
(1043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598785.1| tubulin gamma-1 chain [Mus musculus]. 388 e-108
Alignment gi|NP_598789.1| tubulin gamma-2 chain [Mus musculus]. 385 e-107
Alignment gi|NP_666228.1| tubulin beta-2C chain [Mus musculus]. 155 4e-42
Alignment gi|NP_035785.1| tubulin beta-5 chain [Mus musculus]. 155 4e-42
Alignment gi|NP_076205.1| tubulin beta-2B chain [Mus musculus]. 154 1e-41
Alignment gi|NP_033477.2| tubulin beta-4 chain [Mus musculus]. 154 1e-41
Alignment gi|NP_033476.1| tubulin beta-2A chain [Mus musculus]. 153 1e-41
Alignment gi|NP_075768.1| tubulin beta-3 chain [Mus musculus]. 149 1e-40
Alignment gi|NP_080749.2| tubulin beta-6 chain [Mus musculus]. 147 8e-40
Alignment gi|NP_001074440.1| tubulin, beta 1 [Mus musculus]. 145 3e-39
>ref|NP_598785.1| tubulin gamma-1 chain [Mus musculus].
Length = 451
Score = 388 bits (996), Expect = e-108
Identities = 204/274 (74%), Positives = 211/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNS YAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_598789.1| tubulin gamma-2 chain [Mus musculus].
Length = 451
Score = 385 bits (988), Expect = e-107
Identities = 202/274 (73%), Positives = 209/274 (76%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNS YAKLYNPENIYLSEHGGGAGNNW GFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|NP_666228.1| tubulin beta-2C chain [Mus musculus].
Length = 445
Score = 155 bits (392), Expect(2) = 4e-42
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 4e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_035785.1| tubulin beta-5 chain [Mus musculus].
Length = 444
Score = 155 bits (392), Expect(2) = 4e-42
Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 4e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_076205.1| tubulin beta-2B chain [Mus musculus].
Length = 445
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_033477.2| tubulin beta-4 chain [Mus musculus].
Length = 444
Score = 154 bits (388), Expect(2) = 1e-41
Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A +Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + +P +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_033476.1| tubulin beta-2A chain [Mus musculus].
Length = 445
Score = 153 bits (387), Expect(2) = 1e-41
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 1e-41
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_075768.1| tubulin beta-3 chain [Mus musculus].
Length = 450
Score = 149 bits (377), Expect(2) = 1e-40
Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + + L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSIHQLVENTD 197
Score = 35.8 bits (81), Expect(2) = 1e-40
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249
>ref|NP_080749.2| tubulin beta-6 chain [Mus musculus].
Length = 447
Score = 147 bits (370), Expect(2) = 8e-40
Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R V++ ++ + Y+P
Sbjct: 2 REIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA L+DLEP + S+ + P+ +L+ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQ--TGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E + D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.8 bits (81), Expect(2) = 8e-40
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249
>ref|NP_001074440.1| tubulin, beta 1 [Mus musculus].
Length = 451
Score = 145 bits (365), Expect(2) = 3e-39
Identities = 73/200 (36%), Positives = 123/200 (61%), Gaps = 2/200 (1%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q+GQCGNQIG +FW+ + EHGI G + +R V++ +A + Y+P
Sbjct: 2 REIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 599
RAVL+DLEP + SI +S L+ P++ HG GAGNNWA G +++G ++ E++ D
Sbjct: 62 RAVLVDLEPGTMDSIRSSRLGVLFQPDSFV---HGNSGAGNNWAKGHYTEGAELIENVMD 118
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
++ RE++ D L+GF + H ++ + YP +++ ++SV P+ ++SD
Sbjct: 119 VVRRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPS-PKVSD 177
Query: 780 VVVQPYNSLLTLKRLTQNAD 839
VV+PYN++L++ +L +N D
Sbjct: 178 TVVEPYNAVLSIHQLIENTD 197
Score = 35.8 bits (81), Expect(2) = 3e-39
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSLRFPGQLNAD 249
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,523,842
Number of extensions: 999342
Number of successful extensions: 4534
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4433
Number of HSP's successfully gapped: 53
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002923
(1043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131431.1| PREDICTED: tubulin gamma-1 chain-like [Sus s... 391 e-109
Alignment gi|XP_003131444.2| PREDICTED: tubulin gamma-1 chain-like [Sus s... 384 e-107
Alignment gi|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus s... 155 3e-42
Alignment gi|NP_001038077.1| tubulin beta chain [Sus scrofa]. 155 3e-42
Alignment gi|NP_001230363.1| tubulin beta-2B chain [Sus scrofa]. 154 8e-42
Alignment gi|NP_001107168.1| tubulin beta-1 chain [Sus scrofa]. 147 4e-40
Alignment gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof... 122 1e-31
Alignment gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa]. 118 1e-30
Alignment gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ... 118 2e-30
Alignment gi|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrof... 117 7e-30
>ref|XP_003131431.1| PREDICTED: tubulin gamma-1 chain-like [Sus scrofa].
Length = 451
Score = 391 bits (1005), Expect = e-109
Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
VVVQPYNSLLTLKRLTQNADCV + DR P L+ +
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 942 HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
+R P + ++LIGLI S IPTP HF
Sbjct: 241 TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268
>ref|XP_003131444.2| PREDICTED: tubulin gamma-1 chain-like [Sus scrofa].
Length = 273
Score = 384 bits (986), Expect = e-107
Identities = 187/202 (92%), Positives = 187/202 (92%)
Frame = +3
Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
IIDREADGSDSLEGFVLCH ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 780 VVVQPYNSLLTLKRLTQNADCV 845
VVVQPYNSLLTLKRLTQNADCV
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCV 202
>ref|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus scrofa].
Length = 445
Score = 155 bits (392), Expect(2) = 3e-42
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ LQ GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RAVL+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 3e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001038077.1| tubulin beta chain [Sus scrofa].
Length = 444
Score = 155 bits (392), Expect(2) = 3e-42
Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + DR V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +EA+ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 3e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].
Length = 445
Score = 154 bits (388), Expect(2) = 8e-42
Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q GQCGNQIG +FW+ + EHGI P G + +R +V++ +A Y+P
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
RA+L+DLEP + S+ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
+ +E++ D L+GF L H ++ + YP +++ T+SV P+ ++SD
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178
Query: 783 VVQPYNSLLTLKRLTQNAD 839
VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197
Score = 35.0 bits (79), Expect(2) = 8e-42
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
>ref|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].
Length = 449
Score = 147 bits (370), Expect(2) = 4e-40
Identities = 75/200 (37%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
REI+ +Q+GQCGNQIG +FW+ + EHGI G + +R V++ +A + Y+P
Sbjct: 2 REIVHIQIGQCGNQIGSKFWEVIGEEHGIDGAGSYRGDCSVQLERISVYYNEAHGKKYVP 61
Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 599
RAVL+DLEP + SI +S L+ P++ HG GAGNNWA G +++G ++ E + D
Sbjct: 62 RAVLVDLEPGTMDSIRSSRLGALFRPDSFV---HGNSGAGNNWAKGHYTEGAELVEGVLD 118
Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
+ EA+G D L+GF + H ++ + +P +++ ++SV P+ ++SD
Sbjct: 119 AVRSEAEGCDCLQGFQVVHSLGGGTGSGMGTLLMGKIREEFPDRILNSFSVMPSA-KVSD 177
Query: 780 VVVQPYNSLLTLKRLTQNAD 839
VV+PYN++L++ +L QNAD
Sbjct: 178 TVVEPYNAVLSIHQLLQNAD 197
Score = 36.2 bits (82), Expect(2) = 4e-40
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
+DN AL I L + P++ LVS MS T+LR+PG LN +
Sbjct: 202 IDNEALYDICCRTLRLTTPTYGDLNHLVSLTMSGVTTSLRFPGQLNAD 249
>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
Length = 448
Score = 122 bits (305), Expect(2) = 1e-31
Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 3/202 (1%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
RE I++ +GQ G Q+G W+ C EHGI P+G + T G D FF + +
Sbjct: 2 RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKH 61
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
+PRAV +DLEP VI I N PY +L++PE + + A NN+A G ++ G++I + +
Sbjct: 62 VPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDPVL 119
Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
D I + +D L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
VV+PYNS+LT +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200
Score = 32.7 bits (73), Expect(2) = 1e-31
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
++DN A+ I L I+ P+++ L+S I+S+ +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVD 251
>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
Length = 451
Score = 118 bits (296), Expect(2) = 1e-30
Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
RE I++ +GQ G QIG W+ C EHGI P+G + T G D + FF + +
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDLVL 119
Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
D I + AD L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
VV+PYNS+LT +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200
Score = 32.7 bits (73), Expect(2) = 1e-30
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
++DN A+ I L I+ P+++ L+S I+S+ +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVD 251
>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
Length = 449
Score = 118 bits (296), Expect(2) = 2e-30
Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
RE I++ +GQ G QIG W+ C EHGI P+G + T G D + FF + +
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDLVL 119
Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
D I + AD L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
VV+PYNS+LT +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200
Score = 32.0 bits (71), Expect(2) = 2e-30
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
++DN A+ I L I+ P+++ L+S I+S+ +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVD 251
>ref|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrofa].
Length = 452
Score = 117 bits (294), Expect(2) = 7e-30
Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Frame = +3
Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
RE I++ +GQ G QIG W+ C EHGI P+G + T G D + FF + +
Sbjct: 2 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
+PRAV +DLEP VI + Y +L++PE + + A NN+A G ++ G+++ + +
Sbjct: 62 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKELIDLVL 119
Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
D I + AD L+GF++ H ERL+ Y KK +S++P ++S
Sbjct: 120 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178
Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
VV+PYNS+LT +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200
Score = 31.2 bits (69), Expect(2) = 7e-30
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
++DN A+ I L I+ P+++ L+ I+S+ +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 251
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,655,767
Number of extensions: 775337
Number of successful extensions: 3721
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3643
Number of HSP's successfully gapped: 49
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002923
(1043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 571 e-160
>Sscrofa_Chr12
|| Length = 63588571
Score = 571 bits (288), Expect = e-160
Identities = 288/288 (100%)
Strand = Plus / Minus
Query: 1 ctctgcgcctgtgcagagttccagctgctgctgccgaggggaaaatgatgcccaggttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389610 ctctgcgcctgtgcagagttccagctgctgctgccgaggggaaaatgatgcccaggttgg 20389551
Query: 61 gctcccagggccgccggccgaggggaggcccacactgcacacgcgcagaccgatcacccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389550 gctcccagggccgccggccgaggggaggcccacactgcacacgcgcagaccgatcacccg 20389491
Query: 121 cgtcaaaaggcgaagagaacgcgcgtttcccacgtcctgcgcacccagctgccaagcgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389490 cgtcaaaaggcgaagagaacgcgcgtttcccacgtcctgcgcacccagctgccaagcgtt 20389431
Query: 181 cgtctctgccttgactcccgccaccgcagcagggctggcgcgcccacgtctgaagagcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389430 cgtctctgccttgactcccgccaccgcagcagggctggcgcgcccacgtctgaagagcga 20389371
Query: 241 tgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389370 tgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 20389323
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 399 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388699 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 20388640
Query: 459 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388639 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 20388580
Query: 519 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388579 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 20388528
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 399 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432589 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 20432530
Query: 459 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432529 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 20432470
Query: 519 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432469 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 20432418
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 716 caggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgag 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387243 caggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgag 20387184
Query: 776 cgatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgc 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387183 cgatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgc 20387124
Query: 836 agactgtgtgg 846
|||||||||||
Sbjct: 20387123 agactgtgtgg 20387113
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 717 aggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgagc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20430024 aggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgagc 20429965
Query: 777 gatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgca 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20429964 gatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgca 20429905
Query: 837 gactgtgtgg 846
||||||||||
Sbjct: 20429904 gactgtgtgg 20429895
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 289 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389014 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 20388955
Query: 349 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388954 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 20388901
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 289 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432903 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 20432844
Query: 349 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432843 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 20432790
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 637 agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387725 agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 20387666
Query: 697 tcttggagcgtctgaatgacaggta 721
|||||||||||||||||||||||||
Sbjct: 20387665 tcttggagcgtctgaatgacaggta 20387641
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 567 cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388223 cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 20388164
Query: 627 gacagcctggagg 639
|||||||||||||
Sbjct: 20388163 gacagcctggagg 20388151
Score = 143 bits (72), Expect = 2e-31
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 846 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccaaaa 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20362812 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 20362871
Query: 906 cccgtccttctcccag 921
||||||||||||||||
Sbjct: 20362872 cccgtccttctcccag 20362887
Score = 143 bits (72), Expect = 2e-31
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 846 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccaaaa 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20429425 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 20429366
Query: 906 cccgtccttctcccag 921
||||||||||||||||
Sbjct: 20429365 cccgtccttctcccag 20429350
Score = 119 bits (60), Expect = 3e-24
Identities = 100/112 (89%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 933 ggtgtccaccatcatgtccgccagccacaccaccctgcgctaccccggctacctgaac-a 991
|||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 20363037 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 20363096
Query: 992 cgaactcatcgggctcatcggctccttcatccccacaccggggttccacttc 1043
||| |||||||| ||||||| ||| |||||||||||||| || ||||||||
Sbjct: 20363097 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttc 20363148
Score = 119 bits (60), Expect = 3e-24
Identities = 100/112 (89%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 933 ggtgtccaccatcatgtccgccagccacaccaccctgcgctaccccggctacctgaac-a 991
|||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 20429205 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 20429146
Query: 992 cgaactcatcgggctcatcggctccttcatccccacaccggggttccacttc 1043
||| |||||||| ||||||| ||| |||||||||||||| || ||||||||
Sbjct: 20429145 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttc 20429094
Score = 79.8 bits (40), Expect = 3e-12
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 637 agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 696
||||||||||||||||||| ||||| |||||||| || || |||||||| ||||||||||
Sbjct: 20430539 agggcttcgtgctgtgtcactccattgctgggggaacaggctctggcctgggctcctacc 20430480
Query: 697 tctt 700
||||
Sbjct: 20430479 tctt 20430476
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 230 ctgaagagcgatgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 288
|||| ||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 20433287 ctgaggagcgatgccgagggagatcatcaccctacagttgggccagtgcggcaatcaga 20433229
Score = 65.9 bits (33), Expect = 4e-08
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 567 cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 626
||||| ||||| |||||||| ||||| ||||| ||||||||||| || |||||||| |||
Sbjct: 20430891 cagggagagaagatccatgaggacatttttgacatcatagaccgggaggcagatggcagt 20430832
Query: 627 gacag 631
|||||
Sbjct: 20430831 gacag 20430827
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,719,314
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 16
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)