Animal-Genome cDNA 20110601C-002923


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002923
         (1043 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001032704.1| tubulin gamma-2 chain [Bos taurus].               391   e-109
Alignment   gi|NP_001069723.1| tubulin gamma-1 chain [Bos taurus].               391   e-109
Alignment   gi|XP_001790481.1| PREDICTED: tubulin gamma-1 chain-like isofor...   391   e-109
Alignment   gi|NP_001029835.1| tubulin beta-2C chain [Bos taurus].               155   4e-42
Alignment   gi|NP_001040014.1| tubulin beta-5 chain [Bos taurus].                155   4e-42
Alignment   gi|NP_001003900.1| tubulin beta-2B chain [Bos taurus].               154   1e-41
Alignment   gi|NP_001029869.1| tubulin beta-4 chain [Bos taurus].                154   1e-41
Alignment   gi|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].     153   2e-41
Alignment   gi|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].          153   2e-41
Alignment   gi|NP_001039838.1| tubulin beta-6 chain [Bos taurus].                150   6e-41

>ref|NP_001032704.1| tubulin gamma-2 chain [Bos taurus].
          Length = 451

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_001069723.1| tubulin gamma-1 chain [Bos taurus].
          Length = 451

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|XP_001790481.1| PREDICTED: tubulin gamma-1 chain-like isoform 2 [Bos taurus].
          Length = 451

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_001029835.1| tubulin beta-2C chain [Bos taurus].
          Length = 445

 Score =  155 bits (392), Expect(2) = 4e-42
 Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 4e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001040014.1| tubulin beta-5 chain [Bos taurus].
          Length = 444

 Score =  155 bits (392), Expect(2) = 4e-42
 Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    DR  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 4e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001003900.1| tubulin beta-2B chain [Bos taurus].
          Length = 445

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001029869.1| tubulin beta-4 chain [Bos taurus].
          Length = 444

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A   +Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + +P +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].
          Length = 445

 Score =  153 bits (387), Expect(2) = 2e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 2e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].
          Length = 445

 Score =  153 bits (387), Expect(2) = 2e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 2e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001039838.1| tubulin beta-6 chain [Bos taurus].
          Length = 446

 Score =  150 bits (380), Expect(2) = 6e-41
 Identities = 70/199 (35%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ ++  + Y+P
Sbjct: 2   REIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA L+DLEP  + S+ + P+ +L+ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQ--TGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E +  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.8 bits (81), Expect(2) = 6e-41
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,259,827
Number of extensions: 1200089
Number of successful extensions: 5962
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 5849
Number of HSP's successfully gapped: 62
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002923
         (1043 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_858339.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga...   391   e-109
Alignment   gi|XP_548085.2| PREDICTED: similar to Tubulin gamma-1 chain (Ga...   391   e-109
Alignment   gi|NP_001003105.1| tubulin gamma-1 chain [Canis lupus familiari...   389   e-108
Alignment   gi|XP_858298.1| PREDICTED: similar to Tubulin gamma-1 chain (Ga...   386   e-107
Alignment   gi|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis fa...   158   7e-43
Alignment   gi|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform ...   155   5e-42
Alignment   gi|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis fa...   155   5e-42
Alignment   gi|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform ...   155   5e-42
Alignment   gi|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [...   154   1e-41
Alignment   gi|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [...   154   1e-41

>ref|XP_858339.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
            (Gamma-tubulin complex component 1) (GCP-1) isoform 4
            [Canis familiaris].
          Length = 480

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|XP_548085.2| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
            (Gamma-tubulin complex component 1) (GCP-1) isoform 1
            [Canis familiaris].
          Length = 451

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_001003105.1| tubulin gamma-1 chain [Canis lupus familiaris].
          Length = 451

 Score =  389 bits (998), Expect = e-108
 Identities = 204/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    +R     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|XP_858298.1| PREDICTED: similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
            (Gamma-tubulin complex component 1) (GCP-1) isoform 3
            [Canis familiaris].
          Length = 482

 Score =  386 bits (991), Expect = e-107
 Identities = 208/307 (67%), Positives = 214/307 (69%), Gaps = 39/307 (12%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---------------------------GGAGQHSPEPD 878
            VVVQPYNSLLTLKRLTQNADCV                                HS    
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSPHSWTRW 240

Query: 879  RHRPPA---------HPKP---VLLPGSXAGVHHHVRQPHHPALPRLPEHELIGLIGSFI 1022
               PP          HP P    ++  S   + +          P    ++LIGLI S I
Sbjct: 241  AGTPPCWSATSGREPHPTPQVSTIMSASTTTLRY----------PGYMNNDLIGLIASLI 290

Query: 1023 PTPGFHF 1043
            PTP  HF
Sbjct: 291  PTPRLHF 297


>ref|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis familiaris].
          Length = 576

 Score =  158 bits (399), Expect(2) = 7e-43
 Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 5/284 (1%)
 Frame = +3

Query: 3   LRLCRVPAAAAEGKMMPRLGSQGRRPRGGPHCTRADRSPASKGEENARFPRPAHPAAKRX 182
           LR   +     EGK  P        PRG     R DR+P          P+P  P A + 
Sbjct: 60  LRAAGLCQGQGEGKSDPAEVELSEAPRG-----RRDRAPPPPP------PQPRPPGAPQL 108

Query: 183 XXXXXXXXXXGWRAHV*RAMP----REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIV 350
                       RA    A      REI+ LQ GQCGNQIG +FW+ +  EHGI P G  
Sbjct: 109 PAPSSQLPAPSIRAAAAAAPSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTY 168

Query: 351 EEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG 530
              +    +R +V++ +A   +Y+PRAVL+DLEP  + S+ + P+ +++ P+N    +  
Sbjct: 169 HGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-- 226

Query: 531 GGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXER 707
            GAGNNWA G +++G ++ + + D++ +EA+  D L+GF L H                +
Sbjct: 227 SGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK 286

Query: 708 LNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNAD 839
           + + +P +++ T+SV P+  ++SD VV+PYN+ L++ +L +N D
Sbjct: 287 IREEFPDRIMNTFSVVPS-PKVSDTVVEPYNATLSVHQLVENTD 329



 Score = 35.0 bits (79), Expect(2) = 7e-43
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 334 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 381


>ref|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform 1 [Canis
           familiaris].
          Length = 445

 Score =  155 bits (392), Expect(2) = 5e-42
 Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 5e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis familiaris].
          Length = 444

 Score =  155 bits (392), Expect(2) = 5e-42
 Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    DR  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 5e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform 3 [Canis
           familiaris].
          Length = 416

 Score =  155 bits (392), Expect(2) = 5e-42
 Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 5e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [Canis familiaris].
          Length = 445

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [Canis familiaris].
          Length = 445

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,012,397
Number of extensions: 1234388
Number of successful extensions: 6001
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 5810
Number of HSP's successfully gapped: 136
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002923
         (1043 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001061.2| tubulin gamma-1 chain [Homo sapiens].                391   e-109
Alignment   gi|NP_057521.1| tubulin gamma-2 chain [Homo sapiens].                388   e-108
Alignment   gi|NP_006079.1| tubulin beta-2C chain [Homo sapiens].                155   5e-42
Alignment   gi|NP_821133.1| tubulin beta chain [Homo sapiens].                   155   5e-42
Alignment   gi|NP_821080.1| tubulin beta-2B chain [Homo sapiens].                154   1e-41
Alignment   gi|NP_006078.2| tubulin beta-4 chain [Homo sapiens].                 154   1e-41
Alignment   gi|NP_001060.1| tubulin beta-2A chain [Homo sapiens].                153   2e-41
Alignment   gi|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].       152   2e-41
Alignment   gi|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].       149   1e-40
Alignment   gi|NP_115914.1| tubulin beta-6 chain [Homo sapiens].                 148   3e-40

>ref|NP_001061.2| tubulin gamma-1 chain [Homo sapiens].
          Length = 451

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_057521.1| tubulin gamma-2 chain [Homo sapiens].
          Length = 451

 Score =  388 bits (997), Expect = e-108
 Identities = 204/274 (74%), Positives = 211/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFP QDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_006079.1| tubulin beta-2C chain [Homo sapiens].
          Length = 445

 Score =  155 bits (392), Expect(2) = 5e-42
 Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 5e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_821133.1| tubulin beta chain [Homo sapiens].
          Length = 444

 Score =  155 bits (392), Expect(2) = 5e-42
 Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    DR  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 5e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_821080.1| tubulin beta-2B chain [Homo sapiens].
          Length = 445

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_006078.2| tubulin beta-4 chain [Homo sapiens].
          Length = 444

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A   +Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + +P +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001060.1| tubulin beta-2A chain [Homo sapiens].
          Length = 445

 Score =  153 bits (387), Expect(2) = 2e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 2e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].
          Length = 444

 Score =  152 bits (383), Expect(2) = 2e-41
 Identities = 71/199 (35%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+  Q+GQCGNQIG +FW+ +  EH I   G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ E + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQ--CGAGNNWAKGHYTEGAELMESVMDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+S+ P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +NAD
Sbjct: 179 VVEPYNATLSVHQLIENAD 197



 Score = 36.6 bits (83), Expect(2) = 2e-41
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I +  L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].
          Length = 450

 Score =  149 bits (377), Expect(2) = 1e-40
 Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ +  +  L+ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E +  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSIHQLVENTD 197



 Score = 35.8 bits (81), Expect(2) = 1e-40
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249


>ref|NP_115914.1| tubulin beta-6 chain [Homo sapiens].
          Length = 446

 Score =  148 bits (374), Expect(2) = 3e-40
 Identities = 69/199 (34%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ ++  + Y+P
Sbjct: 2   REIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA L+DLEP  + S+ + P+ +L+ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQ--TGAGNNWAKGHYTEGAELVDAVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E +  D L+GF L H                ++ + +P +++ T+SV P+  ++SD 
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.8 bits (81), Expect(2) = 3e-40
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,125,123
Number of extensions: 1205328
Number of successful extensions: 5817
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5676
Number of HSP's successfully gapped: 53
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002923
         (1043 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598785.1| tubulin gamma-1 chain [Mus musculus].                388   e-108
Alignment   gi|NP_598789.1| tubulin gamma-2 chain [Mus musculus].                385   e-107
Alignment   gi|NP_666228.1| tubulin beta-2C chain [Mus musculus].                155   4e-42
Alignment   gi|NP_035785.1| tubulin beta-5 chain [Mus musculus].                 155   4e-42
Alignment   gi|NP_076205.1| tubulin beta-2B chain [Mus musculus].                154   1e-41
Alignment   gi|NP_033477.2| tubulin beta-4 chain [Mus musculus].                 154   1e-41
Alignment   gi|NP_033476.1| tubulin beta-2A chain [Mus musculus].                153   1e-41
Alignment   gi|NP_075768.1| tubulin beta-3 chain [Mus musculus].                 149   1e-40
Alignment   gi|NP_080749.2| tubulin beta-6 chain [Mus musculus].                 147   8e-40
Alignment   gi|NP_001074440.1| tubulin, beta 1 [Mus musculus].                   145   3e-39

>ref|NP_598785.1| tubulin gamma-1 chain [Mus musculus].
          Length = 451

 Score =  388 bits (996), Expect = e-108
 Identities = 204/274 (74%), Positives = 211/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNS YAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_598789.1| tubulin gamma-2 chain [Mus musculus].
          Length = 451

 Score =  385 bits (988), Expect = e-107
 Identities = 202/274 (73%), Positives = 209/274 (76%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNS YAKLYNPENIYLSEHGGGAGNNW  GFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|NP_666228.1| tubulin beta-2C chain [Mus musculus].
          Length = 445

 Score =  155 bits (392), Expect(2) = 4e-42
 Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 4e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_035785.1| tubulin beta-5 chain [Mus musculus].
          Length = 444

 Score =  155 bits (392), Expect(2) = 4e-42
 Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    DR  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 4e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_076205.1| tubulin beta-2B chain [Mus musculus].
          Length = 445

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_033477.2| tubulin beta-4 chain [Mus musculus].
          Length = 444

 Score =  154 bits (388), Expect(2) = 1e-41
 Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A   +Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + +P +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_033476.1| tubulin beta-2A chain [Mus musculus].
          Length = 445

 Score =  153 bits (387), Expect(2) = 1e-41
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 1e-41
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_075768.1| tubulin beta-3 chain [Mus musculus].
          Length = 450

 Score =  149 bits (377), Expect(2) = 1e-40
 Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ +  +  L+ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E +  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSIHQLVENTD 197



 Score = 35.8 bits (81), Expect(2) = 1e-40
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249


>ref|NP_080749.2| tubulin beta-6 chain [Mus musculus].
          Length = 447

 Score =  147 bits (370), Expect(2) = 8e-40
 Identities = 69/199 (34%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI   G     +    +R  V++ ++  + Y+P
Sbjct: 2   REIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA L+DLEP  + S+ + P+ +L+ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQ--TGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E +  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.8 bits (81), Expect(2) = 8e-40
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNAD 249


>ref|NP_001074440.1| tubulin, beta 1 [Mus musculus].
          Length = 451

 Score =  145 bits (365), Expect(2) = 3e-39
 Identities = 73/200 (36%), Positives = 123/200 (61%), Gaps = 2/200 (1%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q+GQCGNQIG +FW+ +  EHGI   G     +    +R  V++ +A  + Y+P
Sbjct: 2   REIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 599
           RAVL+DLEP  + SI +S    L+ P++     HG  GAGNNWA G +++G ++ E++ D
Sbjct: 62  RAVLVDLEPGTMDSIRSSRLGVLFQPDSFV---HGNSGAGNNWAKGHYTEGAELIENVMD 118

Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
           ++ RE++  D L+GF + H                ++ + YP +++ ++SV P+  ++SD
Sbjct: 119 VVRRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPS-PKVSD 177

Query: 780 VVVQPYNSLLTLKRLTQNAD 839
            VV+PYN++L++ +L +N D
Sbjct: 178 TVVEPYNAVLSIHQLIENTD 197



 Score = 35.8 bits (81), Expect(2) = 3e-39
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSLRFPGQLNAD 249


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,523,842
Number of extensions: 999342
Number of successful extensions: 4534
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4433
Number of HSP's successfully gapped: 53
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002923
         (1043 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131431.1| PREDICTED: tubulin gamma-1 chain-like [Sus s...   391   e-109
Alignment   gi|XP_003131444.2| PREDICTED: tubulin gamma-1 chain-like [Sus s...   384   e-107
Alignment   gi|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus s...   155   3e-42
Alignment   gi|NP_001038077.1| tubulin beta chain [Sus scrofa].                  155   3e-42
Alignment   gi|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].               154   8e-42
Alignment   gi|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].                147   4e-40
Alignment   gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof...   122   1e-31
Alignment   gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].              118   1e-30
Alignment   gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ...   118   2e-30
Alignment   gi|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrof...   117   7e-30

>ref|XP_003131431.1| PREDICTED: tubulin gamma-1 chain-like [Sus scrofa].
          Length = 451

 Score =  391 bits (1005), Expect = e-109
 Identities = 205/274 (74%), Positives = 212/274 (77%), Gaps = 6/274 (2%)
 Frame = +3

Query: 240  MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
            MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1    MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
            IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61   IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600  IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121  IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780  VVVQPYNSLLTLKRLTQNADCV---GGAGQHSPEPDR---HRPPAHPKPVLLPGSXAGVH 941
            VVVQPYNSLLTLKRLTQNADCV        +    DR     P       L+    +   
Sbjct: 181  VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240

Query: 942  HHVRQPHHPALPRLPEHELIGLIGSFIPTPGFHF 1043
              +R P +        ++LIGLI S IPTP  HF
Sbjct: 241  TTLRYPGY------MNNDLIGLIASLIPTPRLHF 268


>ref|XP_003131444.2| PREDICTED: tubulin gamma-1 chain-like [Sus scrofa].
          Length = 273

 Score =  384 bits (986), Expect = e-107
 Identities = 187/202 (92%), Positives = 187/202 (92%)
 Frame = +3

Query: 240 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 419
           MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
Sbjct: 1   MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY 60

Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 599
           IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
Sbjct: 61  IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD 120

Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
           IIDREADGSDSLEGFVLCH               ERLNDRYPKKLVQTYSVFPNQDEMSD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180

Query: 780 VVVQPYNSLLTLKRLTQNADCV 845
           VVVQPYNSLLTLKRLTQNADCV
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCV 202


>ref|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus scrofa].
          Length = 445

 Score =  155 bits (392), Expect(2) = 3e-42
 Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ LQ GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RAVL+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 3e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001038077.1| tubulin beta chain [Sus scrofa].
          Length = 444

 Score =  155 bits (392), Expect(2) = 3e-42
 Identities = 72/199 (36%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    DR  V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +EA+  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 3e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].
          Length = 445

 Score =  154 bits (388), Expect(2) = 8e-42
 Identities = 70/199 (35%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q GQCGNQIG +FW+ +  EHGI P G     +    +R +V++ +A    Y+P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 602
           RA+L+DLEP  + S+ + P+ +++ P+N    +   GAGNNWA G +++G ++ + + D+
Sbjct: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 603 IDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSDV 782
           + +E++  D L+GF L H                ++ + YP +++ T+SV P+  ++SD 
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVSDT 178

Query: 783 VVQPYNSLLTLKRLTQNAD 839
           VV+PYN+ L++ +L +N D
Sbjct: 179 VVEPYNATLSVHQLVENTD 197



 Score = 35.0 bits (79), Expect(2) = 8e-42
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T LR+PG LN +
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249


>ref|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].
          Length = 449

 Score =  147 bits (370), Expect(2) = 4e-40
 Identities = 75/200 (37%), Positives = 122/200 (61%), Gaps = 2/200 (1%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIP 425
           REI+ +Q+GQCGNQIG +FW+ +  EHGI   G      +   +R  V++ +A  + Y+P
Sbjct: 2   REIVHIQIGQCGNQIGSKFWEVIGEEHGIDGAGSYRGDCSVQLERISVYYNEAHGKKYVP 61

Query: 426 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 599
           RAVL+DLEP  + SI +S    L+ P++     HG  GAGNNWA G +++G ++ E + D
Sbjct: 62  RAVLVDLEPGTMDSIRSSRLGALFRPDSFV---HGNSGAGNNWAKGHYTEGAELVEGVLD 118

Query: 600 IIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMSD 779
            +  EA+G D L+GF + H                ++ + +P +++ ++SV P+  ++SD
Sbjct: 119 AVRSEAEGCDCLQGFQVVHSLGGGTGSGMGTLLMGKIREEFPDRILNSFSVMPSA-KVSD 177

Query: 780 VVVQPYNSLLTLKRLTQNAD 839
            VV+PYN++L++ +L QNAD
Sbjct: 178 TVVEPYNAVLSIHQLLQNAD 197



 Score = 36.2 bits (82), Expect(2) = 4e-40
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 853 LDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           +DN AL  I    L +  P++     LVS  MS   T+LR+PG LN +
Sbjct: 202 IDNEALYDICCRTLRLTTPTYGDLNHLVSLTMSGVTTSLRFPGQLNAD 249


>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
          Length = 448

 Score =  122 bits (305), Expect(2) = 1e-31
 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 3/202 (1%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
           RE I++ +GQ G Q+G   W+  C EHGI P+G +    T   G D    FF +     +
Sbjct: 2   RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKH 61

Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
           +PRAV +DLEP VI  I N PY +L++PE +   +    A NN+A G ++ G++I + + 
Sbjct: 62  VPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDPVL 119

Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
           D I + +D    L+GF++ H               ERL+  Y KK    +S++P   ++S
Sbjct: 120 DRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178

Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
             VV+PYNS+LT     +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200



 Score = 32.7 bits (73), Expect(2) = 1e-31
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           ++DN A+  I    L I+ P+++    L+S I+S+   +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVD 251


>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
          Length = 451

 Score =  118 bits (296), Expect(2) = 1e-30
 Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
           RE I++ +GQ G QIG   W+  C EHGI P+G +    T   G D  + FF +     +
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
           +PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I + + 
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDLVL 119

Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
           D I + AD    L+GF++ H               ERL+  Y KK    +S++P   ++S
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178

Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
             VV+PYNS+LT     +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200



 Score = 32.7 bits (73), Expect(2) = 1e-30
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           ++DN A+  I    L I+ P+++    L+S I+S+   +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVD 251


>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
          Length = 449

 Score =  118 bits (296), Expect(2) = 2e-30
 Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
           RE I++ +GQ G QIG   W+  C EHGI P+G +    T   G D  + FF +     +
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
           +PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I + + 
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDLVL 119

Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
           D I + AD    L+GF++ H               ERL+  Y KK    +S++P   ++S
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178

Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
             VV+PYNS+LT     +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200



 Score = 32.0 bits (71), Expect(2) = 2e-30
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           ++DN A+  I    L I+ P+++    L+S I+S+   +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVD 251


>ref|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrofa].
          Length = 452

 Score =  117 bits (294), Expect(2) = 7e-30
 Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
 Frame = +3

Query: 246 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFAT--EGTDRKDVFFYQADDEHY 419
           RE I++ +GQ G QIG   W+  C EHGI P+G +    T   G D  + FF +     +
Sbjct: 2   RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 420 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 596
           +PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G+++ + + 
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKELIDLVL 119

Query: 597 DIIDREADGSDSLEGFVLCHXXXXXXXXXXXXXXXERLNDRYPKKLVQTYSVFPNQDEMS 776
           D I + AD    L+GF++ H               ERL+  Y KK    +S++P   ++S
Sbjct: 120 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP-APQVS 178

Query: 777 DVVVQPYNSLLTLKRLTQNADC 842
             VV+PYNS+LT     +++DC
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDC 200



 Score = 31.2 bits (69), Expect(2) = 7e-30
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 850 VLDNTALNRIATDRLHIQNPSFSQDXPLVSTIMSASHTTLRYPGYLNTN 996
           ++DN A+  I    L I+ P+++    L+  I+S+   +LR+ G LN +
Sbjct: 203 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 251


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,655,767
Number of extensions: 775337
Number of successful extensions: 3721
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3643
Number of HSP's successfully gapped: 49
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002923
         (1043 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         571   e-160

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  571 bits (288), Expect = e-160
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        ctctgcgcctgtgcagagttccagctgctgctgccgaggggaaaatgatgcccaggttgg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389610 ctctgcgcctgtgcagagttccagctgctgctgccgaggggaaaatgatgcccaggttgg 20389551

                                                                            
Query: 61       gctcccagggccgccggccgaggggaggcccacactgcacacgcgcagaccgatcacccg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389550 gctcccagggccgccggccgaggggaggcccacactgcacacgcgcagaccgatcacccg 20389491

                                                                            
Query: 121      cgtcaaaaggcgaagagaacgcgcgtttcccacgtcctgcgcacccagctgccaagcgtt 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389490 cgtcaaaaggcgaagagaacgcgcgtttcccacgtcctgcgcacccagctgccaagcgtt 20389431

                                                                            
Query: 181      cgtctctgccttgactcccgccaccgcagcagggctggcgcgcccacgtctgaagagcga 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389430 cgtctctgccttgactcccgccaccgcagcagggctggcgcgcccacgtctgaagagcga 20389371

                                                                
Query: 241      tgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 288
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389370 tgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 20389323



 Score =  341 bits (172), Expect = 5e-91
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                            
Query: 399      caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 458
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388699 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 20388640

                                                                            
Query: 459      atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 518
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388639 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 20388580

                                                                    
Query: 519      tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 570
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388579 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 20388528



 Score =  341 bits (172), Expect = 5e-91
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                            
Query: 399      caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 458
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432589 caggcggatgatgagcactacatccccagggcggtgctgctggacctggagccgcgggtg 20432530

                                                                            
Query: 459      atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 518
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432529 atccactccatcctcaattccccctatgccaagctctacaacccagagaacatctacctg 20432470

                                                                    
Query: 519      tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 570
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432469 tcggagcatggaggaggagctggcaacaactgggccagcggattctcccagg 20432418



 Score =  260 bits (131), Expect = 1e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                            
Query: 716      caggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgag 775
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387243 caggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgag 20387184

                                                                            
Query: 776      cgatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgc 835
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387183 cgatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgc 20387124

                           
Query: 836      agactgtgtgg 846
                |||||||||||
Sbjct: 20387123 agactgtgtgg 20387113



 Score =  258 bits (130), Expect = 5e-66
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                            
Query: 717      aggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgagc 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20430024 aggtaccccaagaagctggtgcagacttactcagtgtttcccaaccaggacgagatgagc 20429965

                                                                            
Query: 777      gatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgca 836
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20429964 gatgtggtggtccagccctacaactcgctgctcacgctcaagaggctgacccagaacgca 20429905

                          
Query: 837      gactgtgtgg 846
                ||||||||||
Sbjct: 20429904 gactgtgtgg 20429895



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 289      ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 348
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20389014 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 20388955

                                                                      
Query: 349      tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 402
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388954 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 20388901



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 289      ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 348
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432903 ttgggttcgagttctggaaacaactgtgcgccgagcatggcatcagccccgagggcatcg 20432844

                                                                      
Query: 349      tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 402
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20432843 tggaggagttcgccaccgagggcactgaccgcaaggacgtcttcttctaccagg 20432790



 Score =  168 bits (85), Expect = 4e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                            
Query: 637      agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 696
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20387725 agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 20387666

                                         
Query: 697      tcttggagcgtctgaatgacaggta 721
                |||||||||||||||||||||||||
Sbjct: 20387665 tcttggagcgtctgaatgacaggta 20387641



 Score =  145 bits (73), Expect = 6e-32
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                            
Query: 567      cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 626
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388223 cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 20388164

                             
Query: 627      gacagcctggagg 639
                |||||||||||||
Sbjct: 20388163 gacagcctggagg 20388151



 Score =  143 bits (72), Expect = 2e-31
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                            
Query: 846      ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccaaaa 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20362812 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 20362871

                                
Query: 906      cccgtccttctcccag 921
                ||||||||||||||||
Sbjct: 20362872 cccgtccttctcccag 20362887



 Score =  143 bits (72), Expect = 2e-31
 Identities = 75/76 (98%)
 Strand = Plus / Minus

                                                                            
Query: 846      ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccaaaa 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20429425 ggtggtgctggacaacacagccctgaaccggatcgccacagaccgcctgcacatccagaa 20429366

                                
Query: 906      cccgtccttctcccag 921
                ||||||||||||||||
Sbjct: 20429365 cccgtccttctcccag 20429350



 Score =  119 bits (60), Expect = 3e-24
 Identities = 100/112 (89%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                            
Query: 933      ggtgtccaccatcatgtccgccagccacaccaccctgcgctaccccggctacctgaac-a 991
                |||||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||| |
Sbjct: 20363037 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 20363096

                                                                    
Query: 992      cgaactcatcgggctcatcggctccttcatccccacaccggggttccacttc 1043
                ||| |||||||| ||||||| |||  |||||||||||||| || ||||||||
Sbjct: 20363097 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttc 20363148



 Score =  119 bits (60), Expect = 3e-24
 Identities = 100/112 (89%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                            
Query: 933      ggtgtccaccatcatgtccgccagccacaccaccctgcgctaccccggctacctgaac-a 991
                |||||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||| |
Sbjct: 20429205 ggtgtccaccatcatgtcggccagcaccaccaccctgcgctaccccggctacatgaacaa 20429146

                                                                    
Query: 992      cgaactcatcgggctcatcggctccttcatccccacaccggggttccacttc 1043
                ||| |||||||| ||||||| |||  |||||||||||||| || ||||||||
Sbjct: 20429145 cgacctcatcggcctcatcgcctcgctcatccccacaccgcggctccacttc 20429094



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 637      agggcttcgtgctgtgtcattccatcgctggggggactggttctggccttggctcctacc 696
                ||||||||||||||||||| ||||| |||||||| || || |||||||| ||||||||||
Sbjct: 20430539 agggcttcgtgctgtgtcactccattgctgggggaacaggctctggcctgggctcctacc 20430480

                    
Query: 697      tctt 700
                ||||
Sbjct: 20430479 tctt 20430476



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 230      ctgaagagcgatgccgcgggagatcatcaccctgcagctgggccagtgcggcaaccaga 288
                |||| ||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 20433287 ctgaggagcgatgccgagggagatcatcaccctacagttgggccagtgcggcaatcaga 20433229



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 567      cagggtgagaaaatccatgaagacatctttgatatcatagaccgagaagcagatggaagt 626
                ||||| ||||| |||||||| ||||| ||||| ||||||||||| || |||||||| |||
Sbjct: 20430891 cagggagagaagatccatgaggacatttttgacatcatagaccgggaggcagatggcagt 20430832

                     
Query: 627      gacag 631
                |||||
Sbjct: 20430831 gacag 20430827


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,719,314
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 16
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)