Animal-Genome cDNA 20110601C-002936


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002936
         (1382 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098843.1| transmembrane protein 140 [Bos taurus].           181   2e-45

>ref|NP_001098843.1| transmembrane protein 140 [Bos taurus].
          Length = 169

 Score =  181 bits (458), Expect = 2e-45
 Identities = 93/167 (55%), Positives = 100/167 (59%)
 Frame = +3

Query: 600  LTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQCYQFPELEALGVPRVG 779
            LT T I LLF+ALLWKAGNLVDLP+LR+GFYNFCLW+EGTGALQCYQFPELEALGVPRVG
Sbjct: 3    LTITTICLLFFALLWKAGNLVDLPNLRVGFYNFCLWHEGTGALQCYQFPELEALGVPRVG 62

Query: 780  LALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXXXXXXXXXXXXXXYTW 959
            LALARLGVYGA             AWCN++EGEWQLAVG                  YTW
Sbjct: 63   LALARLGVYGALVLTLFVPLPFLLAWCNNNEGEWQLAVGFLATSSVLLASGLGLFLTYTW 122

Query: 960  KWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKSLAAASPV 1100
            KW                            VFPQRA D+S  A S V
Sbjct: 123  KWLQLSLLGPGSLALGAAQTLLILLLVATAVFPQRAKDRSWGATSSV 169


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,620,270
Number of extensions: 1599060
Number of successful extensions: 8410
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8320
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 354
Effective length of database: 14,174,046
Effective search space: 5017612284
Effective search space used: 5017612284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002936
         (1382 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_859811.1| PREDICTED: hypothetical protein XP_854718 isofo...   187   2e-47
Alignment   gi|XP_849803.1| PREDICTED: hypothetical protein XP_844710 isofo...   187   2e-47

>ref|XP_859811.1| PREDICTED: hypothetical protein XP_854718 isoform 3 [Canis
            familiaris].
          Length = 184

 Score =  187 bits (475), Expect = 2e-47
 Identities = 97/175 (55%), Positives = 105/175 (60%)
 Frame = +3

Query: 555  RWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQC 734
            R RRG QLLF GI+L+T  VI LLFYALLWKAGNL DLP+LRIGFYNFCLWNEGTG+LQC
Sbjct: 5    RPRRGNQLLFLGIMLVTVVVISLLFYALLWKAGNLTDLPNLRIGFYNFCLWNEGTGSLQC 64

Query: 735  YQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXX 914
            +QFPELEALGVPR GLALARLG YGA             AWCN ++GEWQLAVG      
Sbjct: 65   HQFPELEALGVPRAGLALARLGAYGALVFSLFVPLPLFLAWCNGNDGEWQLAVGFLAMAS 124

Query: 915  XXXXXXXXXXXXYTWKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKS 1079
                        YTWKW                            VFP+RA DKS
Sbjct: 125  ALLASGLGLFLAYTWKWVRLSLLGPGFLALGAAQALLVLLLMATVVFPRRAEDKS 179


>ref|XP_849803.1| PREDICTED: hypothetical protein XP_844710 isoform 2 [Canis
            familiaris].
          Length = 184

 Score =  187 bits (475), Expect = 2e-47
 Identities = 97/175 (55%), Positives = 105/175 (60%)
 Frame = +3

Query: 555  RWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQC 734
            R RRG QLLF GI+L+T  VI LLFYALLWKAGNL DLP+LRIGFYNFCLWNEGTG+LQC
Sbjct: 5    RPRRGNQLLFLGIMLVTVVVISLLFYALLWKAGNLTDLPNLRIGFYNFCLWNEGTGSLQC 64

Query: 735  YQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXX 914
            +QFPELEALGVPR GLALARLG YGA             AWCN ++GEWQLAVG      
Sbjct: 65   HQFPELEALGVPRAGLALARLGAYGALVFSLFVPLPLFLAWCNGNDGEWQLAVGFLAMAS 124

Query: 915  XXXXXXXXXXXXYTWKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKS 1079
                        YTWKW                            VFP+RA DKS
Sbjct: 125  ALLASGLGLFLAYTWKWVRLSLLGPGFLALGAAQALLVLLLMATVVFPRRAEDKS 179


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,923,092
Number of extensions: 1646323
Number of successful extensions: 8579
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8371
Number of HSP's successfully gapped: 2
Length of query: 460
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 354
Effective length of database: 15,340,888
Effective search space: 5430674352
Effective search space used: 5430674352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002936
         (1382 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060765.3| transmembrane protein 140 [Homo sapiens].            154   2e-37

>ref|NP_060765.3| transmembrane protein 140 [Homo sapiens].
          Length = 185

 Score =  154 bits (388), Expect = 2e-37
 Identities = 78/140 (55%), Positives = 86/140 (61%)
 Frame = +3

Query: 546 PALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGA 725
           P  RWR   QLLF  I++L   VI L+ YALLW+AGNL DLP+LRIGFYNFCLWNE T  
Sbjct: 4   PRPRWRD--QLLFMSIIVLVIVVICLMLYALLWEAGNLTDLPNLRIGFYNFCLWNEDTST 61

Query: 726 LQCYQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXX 905
           LQC+QFPELEALGVPRVGL LARLGVYG+             A CN  E  W+LAVG   
Sbjct: 62  LQCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLA 121

Query: 906 XXXXXXXXXXXXXXXYTWKW 965
                          Y WKW
Sbjct: 122 VSSVLLAGGLGLFLSYVWKW 141


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,666,905
Number of extensions: 1597186
Number of successful extensions: 7983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7871
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 354
Effective length of database: 14,802,980
Effective search space: 5240254920
Effective search space used: 5240254920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002936
         (1382 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_932103.1| transmembrane protein 140 [Mus musculus].            142   6e-34

>ref|NP_932103.1| transmembrane protein 140 [Mus musculus].
          Length = 185

 Score =  142 bits (358), Expect = 6e-34
 Identities = 71/136 (52%), Positives = 81/136 (59%)
 Frame = +3

Query: 558 WRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQCY 737
           WR    L F GI++L A  + L+FYALLWKAGNL DLP LRIGFYNFCLW E  G+L CY
Sbjct: 7   WRNN-HLPFVGIMILLAAALCLMFYALLWKAGNLADLPSLRIGFYNFCLWKEDMGSLACY 65

Query: 738 QFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXXX 917
            FPEL+ LG+P+VGLALARLGVYGA             A  N  EGEW+LAV        
Sbjct: 66  NFPELDVLGIPQVGLALARLGVYGALVLTVFVPLPLLLAQYNRDEGEWRLAVCFLAASSI 125

Query: 918 XXXXXXXXXXXYTWKW 965
                      + WKW
Sbjct: 126 LLAGGLSLFLSFVWKW 141


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,139,233
Number of extensions: 1315068
Number of successful extensions: 6093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6008
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 355
Effective length of database: 12,463,779
Effective search space: 4424641545
Effective search space used: 4424641545
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002936
         (1382 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003134698.1| PREDICTED: transmembrane protein 140-like [S...   249   3e-66

>ref|XP_003134698.1| PREDICTED: transmembrane protein 140-like [Sus scrofa].
          Length = 186

 Score =  249 bits (635), Expect = 3e-66
 Identities = 127/186 (68%), Positives = 127/186 (68%)
 Frame = +3

Query: 543  MPALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTG 722
            MPALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTG
Sbjct: 1    MPALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTG 60

Query: 723  ALQCYQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXX 902
            ALQCYQFPELEALGVPRVGLALARLGVYGA             AWCNHHEGEWQLAVG  
Sbjct: 61   ALQCYQFPELEALGVPRVGLALARLGVYGALVLTLFVPLPLLLAWCNHHEGEWQLAVGFL 120

Query: 903  XXXXXXXXXXXXXXXXYTWKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKSL 1082
                            YTWKW                            VFPQRATDKSL
Sbjct: 121  ATASALLASGLGLFLTYTWKWLRLSLLGPGFLALGAAQALLILALMATAVFPQRATDKSL 180

Query: 1083 AAASPV 1100
            AAASPV
Sbjct: 181  AAASPV 186


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,040,070
Number of extensions: 1033928
Number of successful extensions: 5374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5316
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 358
Effective length of database: 8,804,438
Effective search space: 3151988804
Effective search space used: 3151988804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002936
         (1382 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr18                                                        1699   0.0  

>Sscrofa_Chr18 
||          Length = 61220071

 Score = 1699 bits (857), Expect = 0.0
 Identities = 873/877 (99%), Gaps = 1/877 (0%)
 Strand = Plus / Minus

                                                                            
Query: 507      gtgcccaggaaggcggcgctgtgaagggcggggaggatgcccgccctcaggtggaggcgc 566
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942224 gtgcccaggaaggcggcgctgtgaagggcggggaggatgcccgccctcaggtggaggcgc 14942165

                                                                            
Query: 567      ggcgcccagctgctgttcccgggcatcgtgctgctcacggccaccgtcatcttcctgctg 626
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942164 ggcgcccagctgctgttcccgggcatcgtgctgctcacggccaccgtcatcttcctgctg 14942105

                                                                            
Query: 627      ttctacgcgctcctctggaaggccggcaacctcgtcgacctgcccgacctccggatcggc 686
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942104 ttctacgcgctcctctggaaggccggcaacctcgtcgacctgcccgacctccggatcggc 14942045

                                                                            
Query: 687      ttctacaacttctgcctctggaacgagggcacgggcgccctgcagtgctaccagttcccc 746
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942044 ttctacaacttctgcctctggaacgagggcacgggcgccctgcagtgctaccagttcccc 14941985

                                                                            
Query: 747      gagctggaagccctgggggtgccccgagtgggcctggccctggccaggctgggcgtgtac 806
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941984 gagctggaagccctgggggtgccccgagtgggcctggccctggccaggctgggcgtgtac 14941925

                                                                            
Query: 807      ggggccctggtcctcaccctcttcgtgccgctgcccctcctcctggcctggtgcaaccat 866
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941924 ggggccctggtcctcaccctcttcgtgccgctgcccctcctcctggcctggtgcaaccat 14941865

                                                                            
Query: 867      cacgagggagagtggcagctggcggtgggcttcctggccacggcctccgcgctgctggcc 926
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941864 cacgagggagagtggcagctggcggtgggcttcctggccacggcctccgcgctgctggcc 14941805

                                                                            
Query: 927      agcggcctgggcctcttcctcacctacacgtggaagtggctcaggctctccctcctgggg 986
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941804 agcggcctgggcctcttcctcacctacacgtggaagtggctcaggctctccctcctgggg 14941745

                                                                            
Query: 987      cccggctttctagctctgggcgctgcccaggccttactcatcctcgcgcttatggccacg 1046
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941744 cccggctttctagctctgggcgctgcccaggccttactcatcctcgcgcttatggccacg 14941685

                                                                            
Query: 1047     gctgtgttccctcagagggcaacggacaagagcttggcagctgccagtcccgtctaaagg 1106
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941684 gctgtgttccctcagagggcaacggacaagagcttggcagctgccagtcccgtctaaagg 14941625

                                                                            
Query: 1107     ctgacgtggtcgtaagcgtttggtttgaaccacgctcagaggaggtgccagagcatttca 1166
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941624 ctgacgtggtcgtaagcgtttggtttgaaccacgctcagaggaggtgccagagcatttca 14941565

                                                                            
Query: 1167     caggctggtctatcttctcggccatcctgtttcatagctactgctgatctcgagctcggg 1226
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941564 caggctggtctatcttctcggccatcctgtttcatagctactgctgatctcgagctcggg 14941505

                                                                            
Query: 1227     cagacaggacccaccgcggagcgggtggggccccccatgttaagggggaacagaggcagt 1286
                |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 14941504 cagacaggacccaccgcggagcgggtggggccccccatgttaagggggacaagaggcagt 14941445

                                                                            
Query: 1287     gcgggcggccagggctcctttgcttcatagtgtagggctgtctgtccctcgggccttcca 1346
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941444 gcgggcggccagggctcctttgcttcatagtgtagggctgtctgtccctcgggccttcca 14941385

                                                     
Query: 1347     ggtttcctaggaacacccggaaa-cacgcacctcatt 1382
                ||||||||||||||||||| ||| |||||||||||||
Sbjct: 14941384 ggtttcctaggaacacccgaaaaccacgcacctcatt 14941348



 Score = 1007 bits (508), Expect = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgatcgtgaaggtcccttctgagtaagactccagggtgtgtttatccgggtttaaaacat 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955817 tgatcgtgaaggtcccttctgagtaagactccagggtgtgtttatccgggtttaaaacat 14955758

                                                                            
Query: 61       tgggagctttgagcgtgtgctggcttgtttcctttctggaattctcctgggatataatca 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955757 tgggagctttgagcgtgtgctggcttgtttcctttctggaattctcctgggatataatca 14955698

                                                                            
Query: 121      agacgcttacctggctctttaagtcaactgtctggtcgactcaggtgtgggtgaagcata 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955697 agacgcttacctggctctttaagtcaactgtctggtcgactcaggtgtgggtgaagcata 14955638

                                                                            
Query: 181      aggtgtggggaacagcagggttgtttacattccttgcttctgaaaagtcacacgggccac 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955637 aggtgtggggaacagcagggttgtttacattccttgcttctgaaaagtcacacgggccac 14955578

                                                                            
Query: 241      cggcaagaaatgaaagtgaaatcaggggacagtgtcaccagtcagcacaaacgtgccaga 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955577 cggcaagaaatgaaagtgaaatcaggggacagtgtcaccagtcagcacaaacgtgccaga 14955518

                                                                            
Query: 301      gttcagagagctgtttacttaggcacaactgcgcctgccagccggtcataagctcggggc 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955517 gttcagagagctgtttacttaggcacaactgcgcctgccagccggtcataagctcggggc 14955458

                                                                            
Query: 361      tgcgtgcatctgccgctcccctctccgctgccccgggtctggagcctgcctttgggaagc 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955457 tgcgtgcatctgccgctcccctctccgctgccccgggtctggagcctgcctttgggaagc 14955398

                                                                            
Query: 421      cggcgacagagatcggacagtcaaccgaacctgatttcctgctcctcctcttaggagcct 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955397 cggcgacagagatcggacagtcaaccgaacctgatttcctgctcctcctcttaggagcct 14955338

                                            
Query: 481      tgtgtgggttctgcatcttcttgtttgt 508
                ||||||||||||||||||||||||||||
Sbjct: 14955337 tgtgtgggttctgcatcttcttgtttgt 14955310


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,440,258
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 1382
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1361
Effective length of database: 2,808,413,156
Effective search space: 3822250305316
Effective search space used: 3822250305316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)