Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002936
(1382 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098843.1| transmembrane protein 140 [Bos taurus]. 181 2e-45
>ref|NP_001098843.1| transmembrane protein 140 [Bos taurus].
Length = 169
Score = 181 bits (458), Expect = 2e-45
Identities = 93/167 (55%), Positives = 100/167 (59%)
Frame = +3
Query: 600 LTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQCYQFPELEALGVPRVG 779
LT T I LLF+ALLWKAGNLVDLP+LR+GFYNFCLW+EGTGALQCYQFPELEALGVPRVG
Sbjct: 3 LTITTICLLFFALLWKAGNLVDLPNLRVGFYNFCLWHEGTGALQCYQFPELEALGVPRVG 62
Query: 780 LALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXXXXXXXXXXXXXXYTW 959
LALARLGVYGA AWCN++EGEWQLAVG YTW
Sbjct: 63 LALARLGVYGALVLTLFVPLPFLLAWCNNNEGEWQLAVGFLATSSVLLASGLGLFLTYTW 122
Query: 960 KWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKSLAAASPV 1100
KW VFPQRA D+S A S V
Sbjct: 123 KWLQLSLLGPGSLALGAAQTLLILLLVATAVFPQRAKDRSWGATSSV 169
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,620,270
Number of extensions: 1599060
Number of successful extensions: 8410
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8320
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 354
Effective length of database: 14,174,046
Effective search space: 5017612284
Effective search space used: 5017612284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002936
(1382 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859811.1| PREDICTED: hypothetical protein XP_854718 isofo... 187 2e-47
Alignment gi|XP_849803.1| PREDICTED: hypothetical protein XP_844710 isofo... 187 2e-47
>ref|XP_859811.1| PREDICTED: hypothetical protein XP_854718 isoform 3 [Canis
familiaris].
Length = 184
Score = 187 bits (475), Expect = 2e-47
Identities = 97/175 (55%), Positives = 105/175 (60%)
Frame = +3
Query: 555 RWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQC 734
R RRG QLLF GI+L+T VI LLFYALLWKAGNL DLP+LRIGFYNFCLWNEGTG+LQC
Sbjct: 5 RPRRGNQLLFLGIMLVTVVVISLLFYALLWKAGNLTDLPNLRIGFYNFCLWNEGTGSLQC 64
Query: 735 YQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXX 914
+QFPELEALGVPR GLALARLG YGA AWCN ++GEWQLAVG
Sbjct: 65 HQFPELEALGVPRAGLALARLGAYGALVFSLFVPLPLFLAWCNGNDGEWQLAVGFLAMAS 124
Query: 915 XXXXXXXXXXXXYTWKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKS 1079
YTWKW VFP+RA DKS
Sbjct: 125 ALLASGLGLFLAYTWKWVRLSLLGPGFLALGAAQALLVLLLMATVVFPRRAEDKS 179
>ref|XP_849803.1| PREDICTED: hypothetical protein XP_844710 isoform 2 [Canis
familiaris].
Length = 184
Score = 187 bits (475), Expect = 2e-47
Identities = 97/175 (55%), Positives = 105/175 (60%)
Frame = +3
Query: 555 RWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQC 734
R RRG QLLF GI+L+T VI LLFYALLWKAGNL DLP+LRIGFYNFCLWNEGTG+LQC
Sbjct: 5 RPRRGNQLLFLGIMLVTVVVISLLFYALLWKAGNLTDLPNLRIGFYNFCLWNEGTGSLQC 64
Query: 735 YQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXX 914
+QFPELEALGVPR GLALARLG YGA AWCN ++GEWQLAVG
Sbjct: 65 HQFPELEALGVPRAGLALARLGAYGALVFSLFVPLPLFLAWCNGNDGEWQLAVGFLAMAS 124
Query: 915 XXXXXXXXXXXXYTWKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKS 1079
YTWKW VFP+RA DKS
Sbjct: 125 ALLASGLGLFLAYTWKWVRLSLLGPGFLALGAAQALLVLLLMATVVFPRRAEDKS 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,923,092
Number of extensions: 1646323
Number of successful extensions: 8579
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8371
Number of HSP's successfully gapped: 2
Length of query: 460
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 354
Effective length of database: 15,340,888
Effective search space: 5430674352
Effective search space used: 5430674352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002936
(1382 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060765.3| transmembrane protein 140 [Homo sapiens]. 154 2e-37
>ref|NP_060765.3| transmembrane protein 140 [Homo sapiens].
Length = 185
Score = 154 bits (388), Expect = 2e-37
Identities = 78/140 (55%), Positives = 86/140 (61%)
Frame = +3
Query: 546 PALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGA 725
P RWR QLLF I++L VI L+ YALLW+AGNL DLP+LRIGFYNFCLWNE T
Sbjct: 4 PRPRWRD--QLLFMSIIVLVIVVICLMLYALLWEAGNLTDLPNLRIGFYNFCLWNEDTST 61
Query: 726 LQCYQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXX 905
LQC+QFPELEALGVPRVGL LARLGVYG+ A CN E W+LAVG
Sbjct: 62 LQCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLA 121
Query: 906 XXXXXXXXXXXXXXXYTWKW 965
Y WKW
Sbjct: 122 VSSVLLAGGLGLFLSYVWKW 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,666,905
Number of extensions: 1597186
Number of successful extensions: 7983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7871
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 354
Effective length of database: 14,802,980
Effective search space: 5240254920
Effective search space used: 5240254920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002936
(1382 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932103.1| transmembrane protein 140 [Mus musculus]. 142 6e-34
>ref|NP_932103.1| transmembrane protein 140 [Mus musculus].
Length = 185
Score = 142 bits (358), Expect = 6e-34
Identities = 71/136 (52%), Positives = 81/136 (59%)
Frame = +3
Query: 558 WRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTGALQCY 737
WR L F GI++L A + L+FYALLWKAGNL DLP LRIGFYNFCLW E G+L CY
Sbjct: 7 WRNN-HLPFVGIMILLAAALCLMFYALLWKAGNLADLPSLRIGFYNFCLWKEDMGSLACY 65
Query: 738 QFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXXXXXXX 917
FPEL+ LG+P+VGLALARLGVYGA A N EGEW+LAV
Sbjct: 66 NFPELDVLGIPQVGLALARLGVYGALVLTVFVPLPLLLAQYNRDEGEWRLAVCFLAASSI 125
Query: 918 XXXXXXXXXXXYTWKW 965
+ WKW
Sbjct: 126 LLAGGLSLFLSFVWKW 141
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,139,233
Number of extensions: 1315068
Number of successful extensions: 6093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6008
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 355
Effective length of database: 12,463,779
Effective search space: 4424641545
Effective search space used: 4424641545
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002936
(1382 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134698.1| PREDICTED: transmembrane protein 140-like [S... 249 3e-66
>ref|XP_003134698.1| PREDICTED: transmembrane protein 140-like [Sus scrofa].
Length = 186
Score = 249 bits (635), Expect = 3e-66
Identities = 127/186 (68%), Positives = 127/186 (68%)
Frame = +3
Query: 543 MPALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTG 722
MPALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTG
Sbjct: 1 MPALRWRRGAQLLFPGIVLLTATVIFLLFYALLWKAGNLVDLPDLRIGFYNFCLWNEGTG 60
Query: 723 ALQCYQFPELEALGVPRVGLALARLGVYGAXXXXXXXXXXXXXAWCNHHEGEWQLAVGXX 902
ALQCYQFPELEALGVPRVGLALARLGVYGA AWCNHHEGEWQLAVG
Sbjct: 61 ALQCYQFPELEALGVPRVGLALARLGVYGALVLTLFVPLPLLLAWCNHHEGEWQLAVGFL 120
Query: 903 XXXXXXXXXXXXXXXXYTWKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFPQRATDKSL 1082
YTWKW VFPQRATDKSL
Sbjct: 121 ATASALLASGLGLFLTYTWKWLRLSLLGPGFLALGAAQALLILALMATAVFPQRATDKSL 180
Query: 1083 AAASPV 1100
AAASPV
Sbjct: 181 AAASPV 186
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,040,070
Number of extensions: 1033928
Number of successful extensions: 5374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5316
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 358
Effective length of database: 8,804,438
Effective search space: 3151988804
Effective search space used: 3151988804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002936
(1382 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1699 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 1699 bits (857), Expect = 0.0
Identities = 873/877 (99%), Gaps = 1/877 (0%)
Strand = Plus / Minus
Query: 507 gtgcccaggaaggcggcgctgtgaagggcggggaggatgcccgccctcaggtggaggcgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942224 gtgcccaggaaggcggcgctgtgaagggcggggaggatgcccgccctcaggtggaggcgc 14942165
Query: 567 ggcgcccagctgctgttcccgggcatcgtgctgctcacggccaccgtcatcttcctgctg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942164 ggcgcccagctgctgttcccgggcatcgtgctgctcacggccaccgtcatcttcctgctg 14942105
Query: 627 ttctacgcgctcctctggaaggccggcaacctcgtcgacctgcccgacctccggatcggc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942104 ttctacgcgctcctctggaaggccggcaacctcgtcgacctgcccgacctccggatcggc 14942045
Query: 687 ttctacaacttctgcctctggaacgagggcacgggcgccctgcagtgctaccagttcccc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14942044 ttctacaacttctgcctctggaacgagggcacgggcgccctgcagtgctaccagttcccc 14941985
Query: 747 gagctggaagccctgggggtgccccgagtgggcctggccctggccaggctgggcgtgtac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941984 gagctggaagccctgggggtgccccgagtgggcctggccctggccaggctgggcgtgtac 14941925
Query: 807 ggggccctggtcctcaccctcttcgtgccgctgcccctcctcctggcctggtgcaaccat 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941924 ggggccctggtcctcaccctcttcgtgccgctgcccctcctcctggcctggtgcaaccat 14941865
Query: 867 cacgagggagagtggcagctggcggtgggcttcctggccacggcctccgcgctgctggcc 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941864 cacgagggagagtggcagctggcggtgggcttcctggccacggcctccgcgctgctggcc 14941805
Query: 927 agcggcctgggcctcttcctcacctacacgtggaagtggctcaggctctccctcctgggg 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941804 agcggcctgggcctcttcctcacctacacgtggaagtggctcaggctctccctcctgggg 14941745
Query: 987 cccggctttctagctctgggcgctgcccaggccttactcatcctcgcgcttatggccacg 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941744 cccggctttctagctctgggcgctgcccaggccttactcatcctcgcgcttatggccacg 14941685
Query: 1047 gctgtgttccctcagagggcaacggacaagagcttggcagctgccagtcccgtctaaagg 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941684 gctgtgttccctcagagggcaacggacaagagcttggcagctgccagtcccgtctaaagg 14941625
Query: 1107 ctgacgtggtcgtaagcgtttggtttgaaccacgctcagaggaggtgccagagcatttca 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941624 ctgacgtggtcgtaagcgtttggtttgaaccacgctcagaggaggtgccagagcatttca 14941565
Query: 1167 caggctggtctatcttctcggccatcctgtttcatagctactgctgatctcgagctcggg 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941564 caggctggtctatcttctcggccatcctgtttcatagctactgctgatctcgagctcggg 14941505
Query: 1227 cagacaggacccaccgcggagcgggtggggccccccatgttaagggggaacagaggcagt 1286
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 14941504 cagacaggacccaccgcggagcgggtggggccccccatgttaagggggacaagaggcagt 14941445
Query: 1287 gcgggcggccagggctcctttgcttcatagtgtagggctgtctgtccctcgggccttcca 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941444 gcgggcggccagggctcctttgcttcatagtgtagggctgtctgtccctcgggccttcca 14941385
Query: 1347 ggtttcctaggaacacccggaaa-cacgcacctcatt 1382
||||||||||||||||||| ||| |||||||||||||
Sbjct: 14941384 ggtttcctaggaacacccgaaaaccacgcacctcatt 14941348
Score = 1007 bits (508), Expect = 0.0
Identities = 508/508 (100%)
Strand = Plus / Minus
Query: 1 tgatcgtgaaggtcccttctgagtaagactccagggtgtgtttatccgggtttaaaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955817 tgatcgtgaaggtcccttctgagtaagactccagggtgtgtttatccgggtttaaaacat 14955758
Query: 61 tgggagctttgagcgtgtgctggcttgtttcctttctggaattctcctgggatataatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955757 tgggagctttgagcgtgtgctggcttgtttcctttctggaattctcctgggatataatca 14955698
Query: 121 agacgcttacctggctctttaagtcaactgtctggtcgactcaggtgtgggtgaagcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955697 agacgcttacctggctctttaagtcaactgtctggtcgactcaggtgtgggtgaagcata 14955638
Query: 181 aggtgtggggaacagcagggttgtttacattccttgcttctgaaaagtcacacgggccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955637 aggtgtggggaacagcagggttgtttacattccttgcttctgaaaagtcacacgggccac 14955578
Query: 241 cggcaagaaatgaaagtgaaatcaggggacagtgtcaccagtcagcacaaacgtgccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955577 cggcaagaaatgaaagtgaaatcaggggacagtgtcaccagtcagcacaaacgtgccaga 14955518
Query: 301 gttcagagagctgtttacttaggcacaactgcgcctgccagccggtcataagctcggggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955517 gttcagagagctgtttacttaggcacaactgcgcctgccagccggtcataagctcggggc 14955458
Query: 361 tgcgtgcatctgccgctcccctctccgctgccccgggtctggagcctgcctttgggaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955457 tgcgtgcatctgccgctcccctctccgctgccccgggtctggagcctgcctttgggaagc 14955398
Query: 421 cggcgacagagatcggacagtcaaccgaacctgatttcctgctcctcctcttaggagcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955397 cggcgacagagatcggacagtcaaccgaacctgatttcctgctcctcctcttaggagcct 14955338
Query: 481 tgtgtgggttctgcatcttcttgtttgt 508
||||||||||||||||||||||||||||
Sbjct: 14955337 tgtgtgggttctgcatcttcttgtttgt 14955310
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,440,258
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 1382
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1361
Effective length of database: 2,808,413,156
Effective search space: 3822250305316
Effective search space used: 3822250305316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)