Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002942
(1574 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068705.1| probable 4-hydroxy-2-oxoglutarate aldolase, ... 556 e-158
>ref|NP_001068705.1| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial precursor
[Bos taurus].
Length = 327
Score = 556 bits (1433), Expect = e-158
Identities = 278/320 (86%), Positives = 285/320 (89%)
Frame = +1
Query: 613 MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN 792
ML P+VWSSVR GLSR LSRT+ W SGEGR MD+SGIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1 MLVPRVWSSVRLGLSRVLSRTLRGWPSGEGRGMDLSGIYPPVTTPFTATAEVDYGKLEEN 60
Query: 793 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVE 972
LHKLGT PFRGFVVQGSNGEFPFLTSSERLEVVSR RQA+PKDKLLLAGSGCESTQATVE
Sbjct: 61 LHKLGTLPFRGFVVQGSNGEFPFLTSSERLEVVSRARQALPKDKLLLAGSGCESTQATVE 120
Query: 973 MTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV 1152
MTVSMAQVGADA MVVTPCYYRGRMSSAALIHHYTKVADLSP+PVVLYSVPANTGLDLPV
Sbjct: 121 MTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPVPVVLYSVPANTGLDLPV 180
Query: 1153 DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGFXXXXXXXXXXXXXX 1332
DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTR QDFQVLAGSAGF
Sbjct: 181 DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRSQDFQVLAGSAGFLLASYAIGAVGGVC 240
Query: 1333 XXXXXXXXQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGG 1512
QVCQLERLCLTGQWEDAQKLQHRLIEPNTAVT RFGIPGLKKTMDWFGYYGG
Sbjct: 241 ALANVLGSQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTRRFGIPGLKKTMDWFGYYGG 300
Query: 1513 PCRAPLQELNPAQEEVLRLD 1572
PCR+PLQEL+PAQEE LRLD
Sbjct: 301 PCRSPLQELSPAQEEALRLD 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,927,798
Number of extensions: 2482707
Number of successful extensions: 14041
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13864
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,140,958
Effective search space: 5896779486
Effective search space used: 5896779486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002942
(1574 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850958.1| PREDICTED: hypothetical protein XP_845865 [Cani... 544 e-155
>ref|XP_850958.1| PREDICTED: hypothetical protein XP_845865 [Canis familiaris].
Length = 348
Score = 544 bits (1402), Expect(2) = e-155
Identities = 270/322 (83%), Positives = 284/322 (88%), Gaps = 5/322 (1%)
Frame = +1
Query: 622 PKVWS-----SVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLE 786
P+ W+ SVR+GL R LSR +G WASGEGRK+DI+GIYPPVTTPFTATAEVDYGKL+
Sbjct: 20 PRCWAEQSVFSVRQGLGRGLSRNVGGWASGEGRKVDIAGIYPPVTTPFTATAEVDYGKLD 79
Query: 787 ENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQAT 966
ENLHKLGT PFRGFV+QGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQAT
Sbjct: 80 ENLHKLGTLPFRGFVIQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQAT 139
Query: 967 VEMTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDL 1146
VEMTVSMAQVGADA +VVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDL
Sbjct: 140 VEMTVSMAQVGADAAIVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDL 199
Query: 1147 PVDAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGFXXXXXXXXXXXX 1326
P+DAVVTLSQHPNIVGIKDSGGDVTR+GLIVHKTR+QDFQVLAGSAGF
Sbjct: 200 PIDAVVTLSQHPNIVGIKDSGGDVTRLGLIVHKTRKQDFQVLAGSAGFLLASYAVGAVGG 259
Query: 1327 XXXXXXXXXXQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYY 1506
QVCQLERLCLTGQWEDAQKLQHRLIEPNTAVT RFGIPGLKKTMDWFGYY
Sbjct: 260 VCALANVLGAQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTRRFGIPGLKKTMDWFGYY 319
Query: 1507 GGPCRAPLQELNPAQEEVLRLD 1572
GGPCRAPLQEL+P EE LR+D
Sbjct: 320 GGPCRAPLQELSPMDEEALRMD 341
Score = 25.8 bits (55), Expect(2) = e-155
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 581 ETSWAWSLLQRCWAPKS 631
ETSW L RCWA +S
Sbjct: 11 ETSWFLGRLPRCWAEQS 27
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,863,070
Number of extensions: 2555090
Number of successful extensions: 14884
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14695
Number of HSP's successfully gapped: 2
Length of query: 524
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 417
Effective length of database: 15,307,552
Effective search space: 6383249184
Effective search space used: 6383249184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002942
(1574 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612422.2| probable 4-hydroxy-2-oxoglutarate aldolase, mit... 558 e-159
Alignment gi|NP_001128142.1| probable 4-hydroxy-2-oxoglutarate aldolase, ... 142 1e-33
>ref|NP_612422.2| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial isoform 1
[Homo sapiens].
Length = 327
Score = 558 bits (1437), Expect = e-159
Identities = 276/320 (86%), Positives = 290/320 (90%)
Frame = +1
Query: 613 MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN 792
MLGP+VWSSVR+GLSR+LSR +G WASGEG+K+DI+GIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1 MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 60
Query: 793 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVE 972
LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPK++LLLAGSGCESTQATVE
Sbjct: 61 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVE 120
Query: 973 MTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV 1152
MTVSMAQVGADA MVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV
Sbjct: 121 MTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV 180
Query: 1153 DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGFXXXXXXXXXXXXXX 1332
DAVVTLSQHPNIVG+KDSGGDVTRIGLIVHKTR+QDFQVLAGSAGF
Sbjct: 181 DAVVTLSQHPNIVGMKDSGGDVTRIGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVC 240
Query: 1333 XXXXXXXXQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGG 1512
QVCQLERLC TGQWEDAQKLQHRLIEPN AVT RFGIPGLKK MDWFGYYGG
Sbjct: 241 ALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMDWFGYYGG 300
Query: 1513 PCRAPLQELNPAQEEVLRLD 1572
PCRAPLQEL+PA+EE LR+D
Sbjct: 301 PCRAPLQELSPAEEEALRMD 320
>ref|NP_001128142.1| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial isoform 2
[Homo sapiens].
Length = 164
Score = 142 bits (357), Expect = 1e-33
Identities = 64/72 (88%), Positives = 67/72 (93%)
Frame = +1
Query: 1357 QVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGGPCRAPLQE 1536
QVCQLERLC TGQWEDAQKLQHRLIEPN AVT RFGIPGLKK MDWFGYYGGPCRAPLQE
Sbjct: 86 QVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMDWFGYYGGPCRAPLQE 145
Query: 1537 LNPAQEEVLRLD 1572
L+PA+EE LR+D
Sbjct: 146 LSPAEEEALRMD 157
Score = 136 bits (342), Expect = 6e-32
Identities = 63/73 (86%), Positives = 70/73 (95%)
Frame = +1
Query: 613 MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN 792
MLGP+VWSSVR+GLSR+LSR +G WASGEG+K+DI+GIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1 MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 60
Query: 793 LHKLGTFPFRGFV 831
LHKLGTFPFRG V
Sbjct: 61 LHKLGTFPFRGAV 73
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,216,707
Number of extensions: 2471736
Number of successful extensions: 13551
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13377
Number of HSP's successfully gapped: 3
Length of query: 524
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,770,016
Effective search space: 6159096672
Effective search space used: 6159096672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002942
(1574 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080428.1| probable 4-hydroxy-2-oxoglutarate aldolase, mit... 518 e-147
>ref|NP_080428.1| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial precursor
[Mus musculus].
Length = 321
Score = 518 bits (1334), Expect = e-147
Identities = 257/320 (80%), Positives = 279/320 (87%)
Frame = +1
Query: 613 MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN 792
MLGP++W+S+R+GLSR LSR + +G+K+DI+GIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1 MLGPQIWASMRQGLSRGLSRNV------KGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 54
Query: 793 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVE 972
L++L TFPFRGFVVQGS GEFPFLTS ERLEVVSRVRQA+PKDK L+AGSGCESTQATVE
Sbjct: 55 LNRLATFPFRGFVVQGSTGEFPFLTSLERLEVVSRVRQAIPKDKFLIAGSGCESTQATVE 114
Query: 973 MTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV 1152
MTVSMAQVGAD MVVTPCYYRGRMSSAALIHHYTKVAD+SPIPVVLYSVPANTGL+LPV
Sbjct: 115 MTVSMAQVGADVAMVVTPCYYRGRMSSAALIHHYTKVADVSPIPVVLYSVPANTGLELPV 174
Query: 1153 DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGFXXXXXXXXXXXXXX 1332
DAVVTLSQHPNI+G+KDSGGDVTRIGLIVHKT +QDFQVLAGSAGF
Sbjct: 175 DAVVTLSQHPNIIGLKDSGGDVTRIGLIVHKTSKQDFQVLAGSAGFLLASYAVGAVGGIC 234
Query: 1333 XXXXXXXXQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGG 1512
QVCQLERLCLTGQWE AQ+LQHRLIEPNTAVT RFGIPGLKKTMDWFGYYGG
Sbjct: 235 GLANVLGAQVCQLERLCLTGQWEAAQELQHRLIEPNTAVTRRFGIPGLKKTMDWFGYYGG 294
Query: 1513 PCRAPLQELNPAQEEVLRLD 1572
PCRAPLQEL+P +EE LRLD
Sbjct: 295 PCRAPLQELSPTEEEALRLD 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,307,089
Number of extensions: 2013775
Number of successful extensions: 10618
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10400
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 418
Effective length of database: 12,433,743
Effective search space: 5197304574
Effective search space used: 5197304574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002942
(1574 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177098.1| probable 4-hydroxy-2-oxoglutarate aldolase, ... 595 e-170
>ref|NP_001177098.1| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [Sus
scrofa].
Length = 327
Score = 595 bits (1535), Expect = e-170
Identities = 298/320 (93%), Positives = 298/320 (93%)
Frame = +1
Query: 613 MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN 792
MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1 MLGPKVWSSVRRGLSRALSRTMGSWASGEGRKMDISGIYPPVTTPFTATAEVDYGKLEEN 60
Query: 793 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVE 972
LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVE
Sbjct: 61 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVE 120
Query: 973 MTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV 1152
MTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV
Sbjct: 121 MTVSMAQVGADAVMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPV 180
Query: 1153 DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGFXXXXXXXXXXXXXX 1332
DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGF
Sbjct: 181 DAVVTLSQHPNIVGIKDSGGDVTRIGLIVHKTRRQDFQVLAGSAGFLLASYAVGAVGGVC 240
Query: 1333 XXXXXXXXQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGG 1512
QVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGG
Sbjct: 241 ALANVLGAQVCQLERLCLTGQWEDAQKLQHRLIEPNTAVTWRFGIPGLKKTMDWFGYYGG 300
Query: 1513 PCRAPLQELNPAQEEVLRLD 1572
PCRAPLQELNPAQEEVLRLD
Sbjct: 301 PCRAPLQELNPAQEEVLRLD 320
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,584,174
Number of extensions: 1616053
Number of successful extensions: 9536
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9292
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 420
Effective length of database: 8,754,644
Effective search space: 3676950480
Effective search space used: 3676950480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002942
(1574 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1532 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1532 bits (773), Expect = 0.0
Identities = 815/826 (98%), Gaps = 4/826 (0%)
Strand = Plus / Plus
Query: 1 ctcttccca-gtcccagtgtggatcagctttgcaacatactcgtccagggaccctctcct 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462519 ctcttcccaagtcccagtgtggatcagctttgcaacatactcgtccagggaccctctcct 118462578
Query: 60 ggtgacagctgtcctgtggggttgtatgtggccagcacaggctcgtcacgtggcagtcct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462579 ggtgacagctgtcctgtggggttgtatgtggccagcacaggctcgtcacgtggcagtcct 118462638
Query: 120 gcccggagaagcttggcagggggagtagggcagtccaggggcggctgatcacaggcagct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462639 gcccggagaagcttggcagggggagtagggcagtccaggggcggctgatcacaggcagct 118462698
Query: 180 tctcacccggcctgccacgcctcccacagggcctgcactcagccaatcagctccgccaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462699 tctcacccggcctgccacgcctcccacagggcctgcactcagccaatcagctccgccaag 118462758
Query: 240 ctccgatctgcaaggcggaagccagcctggttcctggctttggggctggaaattatggga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462759 ctccgatctgcaaggcggaagccagcctggttcctggctttggggctggaaattatggga 118462818
Query: 300 tgagggcctggggccccactggaggcaccatttagtgtcaggaccccaggaaccagtcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462819 tgagggcctggggccccactggaggcaccatttagtgtcaggaccccaggaaccagtcct 118462878
Query: 360 ccgtctggccagagagacgctggattgtggcatttctccagctgctccccagggggaggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462879 ccgtctggccagagagacgctggattgtggcatttctccagctgctccccagggggaggg 118462938
Query: 420 aggacctctttgaggcctataggcctagcttctgaccctggcaacaccaggccccagcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462939 aggacctctttgaggcctataggcctagcttctgaccctggcaacaccaggccccagcct 118462998
Query: 480 gcctgaagaccaacaagtcagagggcagcaaatttttaactaggcccattgatcattaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118462999 gcctgaagaccaacaagtcagagggcagcaaatttttaactaggcccattgatcattaac 118463058
Query: 540 cagagtaggaaggagtccgaagtcagcatctcttggggacagaaaccagctgggcctgga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118463059 cagagtaggaaggagtccgaagtcagcatctcttggggacagaaaccagctgggcctgga 118463118
Query: 600 gcctcctgcagagatgctgggccccaaagtctggtcctctgtgaggcgggggctgagcag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118463119 gcctcctgcagagatgctgggccccaaagtctggtcctctgtgaggcgggggctgagcag 118463178
Query: 660 ggctttgtccaggaccatggggagct-gggcctcagggga-ggggaggaagatggacatc 717
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 118463179 ggctttgtccaggaccatggggagctggggcctcaggggagggggaggaagatggacatc 118463238
Query: 718 tcaggcatctannnnnnngtgaccacccccttcactgccacagccgaggtggactatggg 777
||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 118463239 tcaggcatctacccccccgtga-cacccccttcactgccacagccgaggtggactatggg 118463297
Query: 778 aaactggaggagaatctgcacaaactgggcacctttcccttccgag 823
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118463298 aaactggaggagaatctgcacaaactgggcacctttcccttccgag 118463343
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1079 aggttgctgacctgtctccaatacctgtggtgctgtacagtgtcccagccaacacggggc 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118476827 aggttgctgacctgtctccaatacctgtggtgctgtacagtgtcccagccaacacggggc 118476886
Query: 1139 tggacctgcccgtggatgcggtggtcacgctttcccagcacccgaatatcgtgggcatca 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118476887 tggacctgcccgtggatgcggtggtcacgctttcccagcacccgaatatcgtgggcatca 118476946
Query: 1199 aggacagcggtggtgacgtga 1219
|||||||||||||||||||||
Sbjct: 118476947 aggacagcggtggtgacgtga 118476967
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1312 ggagctgtggggggcgtgtgcgccctggccaatgtcctaggggctcaggtgtgccagctg 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118478940 ggagctgtggggggcgtgtgcgccctggccaatgtcctaggggctcaggtgtgccagctg 118478999
Query: 1372 gagcgactctgcctcacagggcaatgggaagatgcccagaagctgcaacaccgcctcatt 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118479000 gagcgactctgcctcacagggcaatgggaagatgcccagaagctgcaacaccgcctcatt 118479059
Query: 1432 gagccaaacaccgcggtga 1450
|||||||||||||||||||
Sbjct: 118479060 gagccaaacaccgcggtga 118479078
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 822 aggtttcgtggtccagggttccaacggcgagttccccttcctgaccagcagcgagcgcct 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118475313 aggtttcgtggtccagggttccaacggcgagttccccttcctgaccagcagcgagcgcct 118475372
Query: 882 ggaggtggtgagccgagtgcgccaggccatgcctaaggacaagctcctgctagccggctc 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118475373 ggaggtggtgagccgagtgcgccaggccatgcctaaggacaagctcctgctagccggctc 118475432
Query: 942 cggctgcgagt 952
|||||||||||
Sbjct: 118475433 cggctgcgagt 118475443
Score = 258 bits (130), Expect = 8e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 953 ccactcaagccacagtggagatgacggtgagcatggcccaggtcggggctgatgccgtga 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118475640 ccactcaagccacagtggagatgacggtgagcatggcccaggtcggggctgatgccgtga 118475699
Query: 1013 tggtggtgaccccttgctactatcgtggccgcatgagcagcgctgccctcattcaccact 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118475700 tggtggtgaccccttgctactatcgtggccgcatgagcagcgctgccctcattcaccact 118475759
Query: 1073 acaccaaggt 1082
||||||||||
Sbjct: 118475760 acaccaaggt 118475769
Score = 240 bits (121), Expect = 2e-60
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 1446 ggtgacctggcgcttcgggatcccggggctgaagaaaaccatggactggtttggctacta 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118489404 ggtgacctggcgcttcgggatcccggggctgaagaaaaccatggactggtttggctacta 118489463
Query: 1506 cggaggcccctgccgcgcccccttgcaggagctgaacccggcccaggaagaagtgctgcg 1565
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 118489464 cggaggcccctgccgcgcccccttgcaggagctgaacccggcccaggaggaggtgctgcg 118489523
Query: 1566 tttggattt 1574
|||||||||
Sbjct: 118489524 tttggattt 118489532
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1216 gtgaccaggattgggctgattgttcacaaaaccaggaggcaggatttccaggtgctggct 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118477202 gtgaccaggattgggctgattgttcacaaaaccaggaggcaggatttccaggtgctggct 118477261
Query: 1276 ggatcggcgggcttcctgctggccagctatgctgtggg 1313
||||||||||||||||||||||||||||||||||||||
Sbjct: 118477262 ggatcggcgggcttcctgctggccagctatgctgtggg 118477299
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,666,609
Number of extensions: 285
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 8
Length of query: 1574
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1552
Effective length of database: 2,808,408,574
Effective search space: 4358650106848
Effective search space used: 4358650106848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)