Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002944
(1202 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002705760.1| PREDICTED: nipsnap homolog 3A-like [Bos taur... 469 e-132
Alignment gi|NP_001073767.1| protein NipSnap homolog 3A [Bos taurus]. 466 e-131
Alignment gi|NP_001070479.1| protein NipSnap homolog 2 [Bos taurus]. 64 3e-10
Alignment gi|NP_001069824.1| protein NipSnap homolog 1 [Bos taurus]. 64 3e-10
>ref|XP_002705760.1| PREDICTED: nipsnap homolog 3A-like [Bos taurus].
Length = 247
Score = 469 bits (1207), Expect = e-132
Identities = 225/247 (91%), Positives = 231/247 (93%)
Frame = +1
Query: 148 MLPLRSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNI 327
ML LR LTR L+ +A QVCSSFATGPRQYDGTFYEFRT YLKPSKMNEFLENVKKNI
Sbjct: 1 MLALRRSLTRALAAPTMAPQVCSSFATGPRQYDGTFYEFRTYYLKPSKMNEFLENVKKNI 60
Query: 328 HLRTARSELVGYWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLAL 507
HLRT SELVGYWSVEFGGR+NKVFHIWKYDNFAHR EV+KALAKDKEWQEQFLIPNLAL
Sbjct: 61 HLRTVHSELVGYWSVEFGGRMNKVFHIWKYDNFAHRSEVRKALAKDKEWQEQFLIPNLAL 120
Query: 508 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKL 687
IDKQESEITYLVPWCKL KPPKEGVYELATFQMKPGGPALWGDPFKRAVHTH+NQGY KL
Sbjct: 121 IDKQESEITYLVPWCKLVKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHVNQGYTKL 180
Query: 688 VGVFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTP 867
VGVFHAEYG+LNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFL SQQNMLL P
Sbjct: 181 VGVFHAEYGVLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLESQQNMLLIP 240
Query: 868 TSFSPLK 888
TSFSPLK
Sbjct: 241 TSFSPLK 247
>ref|NP_001073767.1| protein NipSnap homolog 3A [Bos taurus].
Length = 247
Score = 466 bits (1200), Expect = e-131
Identities = 224/247 (90%), Positives = 230/247 (93%)
Frame = +1
Query: 148 MLPLRSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNI 327
ML LR LTR L+ +A QVCSSFATGPRQYDGTFYEFRT YLKPSKMNEFLENVKKNI
Sbjct: 1 MLALRRSLTRALAAPTMAPQVCSSFATGPRQYDGTFYEFRTYYLKPSKMNEFLENVKKNI 60
Query: 328 HLRTARSELVGYWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLAL 507
HLRT SELVGYWSVEFGGR+NKVFHIWKYDNFAHR EV+KALAKDKEWQEQFLIPNLAL
Sbjct: 61 HLRTVHSELVGYWSVEFGGRMNKVFHIWKYDNFAHRSEVRKALAKDKEWQEQFLIPNLAL 120
Query: 508 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKL 687
IDKQESEITYLVPWCKL KPPKEGVYELATFQMKPGGPALWGDPFKRAVHTH+NQGY KL
Sbjct: 121 IDKQESEITYLVPWCKLVKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHVNQGYTKL 180
Query: 688 VGVFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTP 867
VGVFHAEYG+LNR HVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFL SQQNMLL P
Sbjct: 181 VGVFHAEYGVLNRDHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLESQQNMLLIP 240
Query: 868 TSFSPLK 888
TSFSPLK
Sbjct: 241 TSFSPLK 247
>ref|NP_001070479.1| protein NipSnap homolog 2 [Bos taurus].
Length = 286
Score = 63.9 bits (154), Expect = 3e-10
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 7/220 (3%)
Frame = +1
Query: 250 TFYEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKY 417
+ Y+ + +KP + N+ + V IH + LVG W+ +G + ++ H+W+Y
Sbjct: 72 SLYKLQFHNVKPECLEAYNKICQEVLPRIHEDKHYPCTLVGTWNTWYGEQ-DQAVHLWRY 130
Query: 418 DN-FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYE 588
+ + EV L +++E+ E + L+ ++ + W E P+ G +YE
Sbjct: 131 EGGYPALTEVMSKLKENQEFSEFRKARSNMLLSRKNQLLLEFSFWN--EPIPRSGPNIYE 188
Query: 589 LATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRA 768
L ++Q++PG WG+ + RA+ Q + VG F ++ G L VH LW + +R
Sbjct: 189 LRSYQLRPGTMIEWGNYWARAI--RFRQDGNEAVGGFFSQIGQLYMVHHLWAYKDLQTRE 246
Query: 769 AGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
R+ + V +V + ++ ++ P SPL+
Sbjct: 247 DIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPQKTSPLQ 286
>ref|NP_001069824.1| protein NipSnap homolog 1 [Bos taurus].
Length = 284
Score = 63.5 bits (153), Expect = 3e-10
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 5/216 (2%)
Frame = +1
Query: 256 YEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKYDN 423
Y+ + +KP + N E V +HL LVG W+ +G + ++ H+W++
Sbjct: 72 YKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQ-DQAVHLWRFSG 130
Query: 424 -FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 600
+ ++ L +KE+ E + L+ ++ + W + + +YEL T+
Sbjct: 131 GYPALMDCMNKLKNNKEYLEFRKERSQMLLSRRNQLLLEFSFWNEPQPRAGPNIYELRTY 190
Query: 601 QMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAGRH 780
++KPG WG+ + RA+ Q + VG F ++ G L VH LW + SR R+
Sbjct: 191 KLKPGTMIEWGNNWARAI--KYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 248
Query: 781 QSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
+ V +V + ++ ++ P SPL+
Sbjct: 249 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,220,830
Number of extensions: 1159706
Number of successful extensions: 3056
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 296
Effective length of database: 14,240,222
Effective search space: 4215105712
Effective search space used: 4215105712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002944
(1202 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532021.2| PREDICTED: similar to NipSnap3A protein (NipSna... 456 e-128
Alignment gi|XP_538772.2| PREDICTED: similar to NipSnap3A protein (NipSna... 416 e-116
Alignment gi|XP_536828.1| PREDICTED: similar to NipSnap2 protein (Gliobla... 64 2e-10
Alignment gi|XP_854687.1| PREDICTED: similar to NipSnap1 protein [Canis f... 64 3e-10
Alignment gi|XP_855709.1| PREDICTED: similar to NipSnap2 protein (Gliobla... 58 2e-08
Alignment gi|XP_855682.1| PREDICTED: similar to NipSnap2 protein (Gliobla... 50 6e-06
>ref|XP_532021.2| PREDICTED: similar to NipSnap3A protein (NipSnap4) (Target for
Salmonella secreted protein C) (TassC) [Canis
familiaris].
Length = 419
Score = 456 bits (1173), Expect = e-128
Identities = 228/296 (77%), Positives = 245/296 (82%), Gaps = 6/296 (2%)
Frame = +1
Query: 19 PGPSLCFPLVQALFLAERKP*EEEFKDEDRL------LPPSALQAASCAMLPLRSGLTRI 180
P P C L + L ER+P + R+ LPP+ L P + R
Sbjct: 129 PEPGACRVLQRTL---ERRPGGVRARARARVRSDLLSLPPAPLPPRLARAWPSQGA--RN 183
Query: 181 LSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNIHLRTARSELVG 360
L ++AT VCSSFATGPRQYDGTFYEFRT YLKPSKMNEFLEN KKNIHLRTA SELVG
Sbjct: 184 LLANLIATAVCSSFATGPRQYDGTFYEFRTYYLKPSKMNEFLENTKKNIHLRTAHSELVG 243
Query: 361 YWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYL 540
YWSVEFGGR+NKVFHIWKYDNFAHR EV+KALAKDKEWQEQ+LIPNLALIDKQESEITYL
Sbjct: 244 YWSVEFGGRMNKVFHIWKYDNFAHRTEVRKALAKDKEWQEQYLIPNLALIDKQESEITYL 303
Query: 541 VPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGML 720
VPW KLE+PPKEG+YELATFQMKPGGPALWGDPFKRAVHTH+N+GY KLVGVFHAEYG+L
Sbjct: 304 VPWSKLEEPPKEGIYELATFQMKPGGPALWGDPFKRAVHTHVNRGYTKLVGVFHAEYGVL 363
Query: 721 NRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
NRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESV+FL SQQNMLL PTSFSPLK
Sbjct: 364 NRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVHFLESQQNMLLIPTSFSPLK 419
>ref|XP_538772.2| PREDICTED: similar to NipSnap3A protein (NipSnap4) (Target for
Salmonella secreted protein C) (TassC) [Canis
familiaris].
Length = 434
Score = 416 bits (1068), Expect = e-116
Identities = 194/227 (85%), Positives = 213/227 (93%)
Frame = +1
Query: 208 VCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNIHLRTARSELVGYWSVEFGGR 387
+CSSFATGPRQYDGTFYEFRT LKPSKMNEFLENVKKNIHLRTA+SELVG+WSVEFGG+
Sbjct: 208 LCSSFATGPRQYDGTFYEFRTYCLKPSKMNEFLENVKKNIHLRTAQSELVGFWSVEFGGQ 267
Query: 388 LNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKP 567
+NKVFHIWKYDNFAHR EV+KA+AK+KEWQ+Q +IPNLALID+QE+EITYLVPWCKLEKP
Sbjct: 268 MNKVFHIWKYDNFAHRTEVRKAVAKNKEWQQQCVIPNLALIDEQETEITYLVPWCKLEKP 327
Query: 568 PKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWN 747
KEGVYEL FQ+KPGGPALWGD FKRA++ H++ GY+KLVGVFH EYG LNRVHVLWWN
Sbjct: 328 TKEGVYELVIFQLKPGGPALWGDAFKRAINAHVDLGYSKLVGVFHTEYGALNRVHVLWWN 387
Query: 748 ESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
ESADSRAAGRHQSHEDPRVVAAVRESVN+L SQQNMLL PTSFSPLK
Sbjct: 388 ESADSRAAGRHQSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK 434
>ref|XP_536828.1| PREDICTED: similar to NipSnap2 protein (Glioblastoma amplified
sequence) isoform 1 [Canis familiaris].
Length = 286
Score = 64.3 bits (155), Expect = 2e-10
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 7/220 (3%)
Frame = +1
Query: 250 TFYEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKY 417
+ Y+ + +KP + N+ + V IH + LVG W+ +G + ++ H+W+Y
Sbjct: 72 SLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQ-DQAVHLWRY 130
Query: 418 DN-FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYE 588
+ + EV L +++E+ E + L+ ++ + W E P+ G +YE
Sbjct: 131 EGGYPALTEVMNKLRENQEFVEFRKARSNMLLSRKNQLLLEFSFWN--EPIPRSGPNIYE 188
Query: 589 LATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRA 768
L ++Q++PG WG+ + RA+ Q + VG F ++ G L VH LW + SR
Sbjct: 189 LRSYQLRPGTMIEWGNYWARAI--RFRQDGNEAVGGFFSQIGQLYMVHHLWAYKDLQSRE 246
Query: 769 AGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
R+ + V +V + ++ ++ P SPL+
Sbjct: 247 DIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ 286
>ref|XP_854687.1| PREDICTED: similar to NipSnap1 protein [Canis familiaris].
Length = 282
Score = 63.9 bits (154), Expect = 3e-10
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 5/216 (2%)
Frame = +1
Query: 256 YEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKYDN 423
Y+ + +KP + N E V +HL LVG W+ +G + ++ H+W++
Sbjct: 70 YKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQ-DQAVHLWRFSG 128
Query: 424 -FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 600
+ ++ L +KE+ E + L+ ++ + W + + +YEL T+
Sbjct: 129 GYPALMDCMNKLKSNKEYLEFRKERSQMLLSRRNQMLLEFSFWNEPQPRAGPNIYELRTY 188
Query: 601 QMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAGRH 780
++KPG WG+ + RA+ Q + VG F ++ G L VH LW + SR R+
Sbjct: 189 KLKPGTMIEWGNNWARAI--KYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 246
Query: 781 QSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
+ V +V + ++ ++ P SPL+
Sbjct: 247 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 282
>ref|XP_855709.1| PREDICTED: similar to NipSnap2 protein (Glioblastoma amplified
sequence) isoform 3 [Canis familiaris].
Length = 328
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Frame = +1
Query: 250 TFYEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKY 417
+ Y+ + +KP + N+ + V IH + LVG W+ +G + ++ H+W+Y
Sbjct: 72 SLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQ-DQAVHLWRY 130
Query: 418 DN-FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYE 588
+ + EV L +++E+ E + L+ ++ + W E P+ G +YE
Sbjct: 131 EGGYPALTEVMNKLRENQEFVEFRKARSNMLLSRKNQLLLEFSFWN--EPIPRSGPNIYE 188
Query: 589 LATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLW 741
L ++Q++PG WG+ + RA+ Q + VG F ++ G L VH LW
Sbjct: 189 LRSYQLRPGTMIEWGNYWARAI--RFRQDGNEAVGGFFSQIGQLYMVHHLW 237
>ref|XP_855682.1| PREDICTED: similar to NipSnap2 protein (Glioblastoma amplified
sequence) isoform 2 [Canis familiaris].
Length = 271
Score = 49.7 bits (117), Expect = 6e-06
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Frame = +1
Query: 250 TFYEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKY 417
+ Y+ + +KP + N+ + V IH + LVG W+ +G + ++ H+W+Y
Sbjct: 72 SLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQ-DQAVHLWRY 130
Query: 418 DN-FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYE 588
+ + EV L +++E+ E + L+ ++ + W E P+ G +YE
Sbjct: 131 EGGYPALTEVMNKLRENQEFVEFRKARSNMLLSRKNQLLLEFSFWN--EPIPRSGPNIYE 188
Query: 589 LATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGML 720
L ++Q++PG WG+ + RA+ Q + VG F ++ G L
Sbjct: 189 LRSYQLRPGTMIEWGNYWARAI--RFRQDGNEAVGGFFSQIGQL 230
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,260,721
Number of extensions: 1195076
Number of successful extensions: 3479
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 6
Length of query: 400
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 295
Effective length of database: 15,374,224
Effective search space: 4535396080
Effective search space used: 4535396080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002944
(1202 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056284.1| protein NipSnap homolog 3A [Homo sapiens]. 453 e-127
Alignment gi|NP_060846.2| protein NipSnap homolog 3B [Homo sapiens]. 429 e-120
Alignment gi|NP_001189431.1| protein NipSnap homolog 1 isoform 2 [Homo sa... 66 6e-11
Alignment gi|NP_003625.2| protein NipSnap homolog 1 isoform 1 [Homo sapie... 66 6e-11
Alignment gi|NP_001474.1| protein NipSnap homolog 2 isoform 1 [Homo sapie... 65 1e-10
>ref|NP_056284.1| protein NipSnap homolog 3A [Homo sapiens].
Length = 247
Score = 453 bits (1165), Expect = e-127
Identities = 217/247 (87%), Positives = 226/247 (91%)
Frame = +1
Query: 148 MLPLRSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNI 327
ML LRS LTR L+ R LA Q+CSSFATGPRQYDG FYEFR+ YLKPSKMNEFLEN +KN
Sbjct: 1 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA 60
Query: 328 HLRTARSELVGYWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLAL 507
HLRTA SELVGYWSVEFGGR+N VFHIWKYDNFAHR EV+KALAKDKEWQEQFLIPNLAL
Sbjct: 61 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL 120
Query: 508 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKL 687
IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGD FKRAVH H+N GY KL
Sbjct: 121 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL 180
Query: 688 VGVFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTP 867
VGVFH EYG LNRVHVLWWNESADSRAAGRH+SHEDPRVVAAVRESVN+L SQQNMLL P
Sbjct: 181 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 240
Query: 868 TSFSPLK 888
TSFSPLK
Sbjct: 241 TSFSPLK 247
>ref|NP_060846.2| protein NipSnap homolog 3B [Homo sapiens].
Length = 247
Score = 429 bits (1103), Expect = e-120
Identities = 204/247 (82%), Positives = 221/247 (89%)
Frame = +1
Query: 148 MLPLRSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNI 327
ML LRSGLT+ L+ R LA QVCSSFATGPRQYDGTFYEFRT YLKPS MN F+EN+KKNI
Sbjct: 1 MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYLKPSNMNAFMENLKKNI 60
Query: 328 HLRTARSELVGYWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLAL 507
HLRT+ SELVG+WSVEFGGR NKVFHIWKYDNFAHR EV+KALA KEWQEQ +IPNLA
Sbjct: 61 HLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKALANCKEWQEQSIIPNLAR 120
Query: 508 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKL 687
IDKQE+EITYL+PW KLEKPPKEGVYELA FQMKPGGPALWGD F+RA++ H+N GY K+
Sbjct: 121 IDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPALWGDAFERAINAHVNLGYTKV 180
Query: 688 VGVFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTP 867
VGVFH EYG LNRVHVLWWNESADSRAAGRH+SHEDPRVVAAVRESVN+L SQQNMLL P
Sbjct: 181 VGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP 240
Query: 868 TSFSPLK 888
SFSPLK
Sbjct: 241 ASFSPLK 247
>ref|NP_001189431.1| protein NipSnap homolog 1 isoform 2 [Homo sapiens].
Length = 264
Score = 66.2 bits (160), Expect = 6e-11
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Frame = +1
Query: 160 RSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNIHL-R 336
RS + PR A S Y F+ + +YL N E V +HL
Sbjct: 25 RSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYL--DAYNSLTEAVLPKLHLDE 82
Query: 337 TARSELVGYWSVEFGGRLNKVFHIWKYDN-FAHRIEVQKALAKDKEWQEQFLIPNLALID 513
LVG W+ +G + ++ H+W++ + ++ L +KE+ E + L+
Sbjct: 83 DYPCSLVGNWNTWYGEQ-DQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLS 141
Query: 514 KQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVG 693
++ + W + + +YEL T+++KPG WG+ + RA+ Q + VG
Sbjct: 142 RRNQLLLEFSFWNEPQPRMGPNIYELRTYKLKPGTMIEWGNNWARAI--KYRQENQEAVG 199
Query: 694 VFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTS 873
F ++ G L VH LW + SR R+ + V +V + ++ ++ P
Sbjct: 200 GFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLK 259
Query: 874 FSPLK 888
SPL+
Sbjct: 260 ISPLQ 264
>ref|NP_003625.2| protein NipSnap homolog 1 isoform 1 [Homo sapiens].
Length = 284
Score = 66.2 bits (160), Expect = 6e-11
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Frame = +1
Query: 160 RSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNIHL-R 336
RS + PR A S Y F+ + +YL N E V +HL
Sbjct: 45 RSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYL--DAYNSLTEAVLPKLHLDE 102
Query: 337 TARSELVGYWSVEFGGRLNKVFHIWKYDN-FAHRIEVQKALAKDKEWQEQFLIPNLALID 513
LVG W+ +G + ++ H+W++ + ++ L +KE+ E + L+
Sbjct: 103 DYPCSLVGNWNTWYGEQ-DQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLS 161
Query: 514 KQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVG 693
++ + W + + +YEL T+++KPG WG+ + RA+ Q + VG
Sbjct: 162 RRNQLLLEFSFWNEPQPRMGPNIYELRTYKLKPGTMIEWGNNWARAI--KYRQENQEAVG 219
Query: 694 VFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTS 873
F ++ G L VH LW + SR R+ + V +V + ++ ++ P
Sbjct: 220 GFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLK 279
Query: 874 FSPLK 888
SPL+
Sbjct: 280 ISPLQ 284
>ref|NP_001474.1| protein NipSnap homolog 2 isoform 1 [Homo sapiens].
Length = 286
Score = 65.1 bits (157), Expect = 1e-10
Identities = 65/274 (23%), Positives = 117/274 (42%), Gaps = 21/274 (7%)
Frame = +1
Query: 130 QAASCAMLP-----------------LRSGLTRILSPRMLATQVCSSFATGPRQYDGTFY 258
+AA C++LP L+S R + PR A + Y F+
Sbjct: 20 RAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAKKETSNLYKLQFH 79
Query: 259 EFRTDYLKPSKMNEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKYDN-FAH 432
+ + L+ N+ + V IH + LVG W+ +G + ++ H+W+Y+ +
Sbjct: 80 NVKPECLEA--YNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQ-DQAVHLWRYEGGYPA 136
Query: 433 RIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYELATFQM 606
EV L ++KE+ E + L+ ++ + W E P+ G +YEL ++Q+
Sbjct: 137 LTEVMNKLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWN--EPVPRSGPNIYELRSYQL 194
Query: 607 KPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAGRHQS 786
+PG WG+ + RA+ Q + VG F ++ G L VH LW +R R+ +
Sbjct: 195 RPGTMIEWGNYWARAI--RFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAA 252
Query: 787 HEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
V +V + ++ ++ P SPL+
Sbjct: 253 WHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,468,900
Number of extensions: 1185710
Number of successful extensions: 2967
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2957
Number of HSP's successfully gapped: 5
Length of query: 400
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 295
Effective length of database: 14,835,944
Effective search space: 4376603480
Effective search space used: 4376603480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002944
(1202 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079899.1| protein NipSnap homolog 3A [Mus musculus]. 415 e-116
Alignment gi|NP_082805.1| nipsnap homolog 3A [Mus musculus]. 386 e-107
Alignment gi|NP_032121.3| protein NipSnap homolog 2 [Mus musculus]. 64 2e-10
Alignment gi|NP_032724.1| protein NipSnap homolog 1 [Mus musculus]. 64 3e-10
>ref|NP_079899.1| protein NipSnap homolog 3A [Mus musculus].
Length = 247
Score = 415 bits (1067), Expect = e-116
Identities = 196/247 (79%), Positives = 215/247 (87%)
Frame = +1
Query: 148 MLPLRSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNI 327
ML LRSGL L+PR+L QVCS FATGPRQ +GTFYEFRT +LKPSK NEFLEN K ++
Sbjct: 1 MLALRSGLRTALAPRVLTPQVCSPFATGPRQSNGTFYEFRTYFLKPSKTNEFLENFKNSV 60
Query: 328 HLRTARSELVGYWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLAL 507
HLRTA SE++GYW+VEFGGR N+VFHIWKYDNFAHR V+KALAKDKEWQE+FLIPNLA
Sbjct: 61 HLRTAHSEMIGYWTVEFGGRTNRVFHIWKYDNFAHRTAVRKALAKDKEWQERFLIPNLAF 120
Query: 508 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKL 687
IDKQE EITYLVPWCK+ PPKEGVYELATFQMKPGGPALWG+ FKRAV+ H+ GY+ L
Sbjct: 121 IDKQEVEITYLVPWCKIGTPPKEGVYELATFQMKPGGPALWGNAFKRAVNAHVELGYSTL 180
Query: 688 VGVFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTP 867
VGVFH EYG LNRVHVLWWNESADSRAAGRH SHEDPRVVAAVRESV++L SQQN L P
Sbjct: 181 VGVFHTEYGALNRVHVLWWNESADSRAAGRHWSHEDPRVVAAVRESVSYLESQQNTFLIP 240
Query: 868 TSFSPLK 888
TSFSPLK
Sbjct: 241 TSFSPLK 247
>ref|NP_082805.1| nipsnap homolog 3A [Mus musculus].
Length = 245
Score = 386 bits (992), Expect = e-107
Identities = 185/247 (74%), Positives = 207/247 (83%)
Frame = +1
Query: 148 MLPLRSGLTRILSPRMLATQVCSSFATGPRQYDGTFYEFRTDYLKPSKMNEFLENVKKNI 327
ML LR L R+ + L QVCS F TG RQ +GTFYEF T YLKP+ + EFL N KKN+
Sbjct: 1 MLALRGSLRRL--SQALVHQVCSPFTTGHRQQEGTFYEFCTYYLKPASVEEFLYNFKKNV 58
Query: 328 HLRTARSELVGYWSVEFGGRLNKVFHIWKYDNFAHRIEVQKALAKDKEWQEQFLIPNLAL 507
HLRTA SELVGYW+V FGGR+N VFHIWKYDNFAHR V KALAKD++WQEQFLIPNL L
Sbjct: 59 HLRTAHSELVGYWTVGFGGRINTVFHIWKYDNFAHRAAVYKALAKDEDWQEQFLIPNLPL 118
Query: 508 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKL 687
IDKQESEITYLVPWCK+ KPPKEGVYELATF MKPGGPALWG+ F+RAV+ H +QGY KL
Sbjct: 119 IDKQESEITYLVPWCKIGKPPKEGVYELATFLMKPGGPALWGEAFQRAVNAHADQGYIKL 178
Query: 688 VGVFHAEYGMLNRVHVLWWNESADSRAAGRHQSHEDPRVVAAVRESVNFLGSQQNMLLTP 867
+GVFHAEYG+LNRVHVLWW E+AD+RAAGR Q+HEDPRVV+AVRESVN+L QQNM L P
Sbjct: 179 IGVFHAEYGLLNRVHVLWWCENADARAAGRRQAHEDPRVVSAVRESVNYLDVQQNMFLIP 238
Query: 868 TSFSPLK 888
SFSPLK
Sbjct: 239 WSFSPLK 245
>ref|NP_032121.3| protein NipSnap homolog 2 [Mus musculus].
Length = 281
Score = 64.3 bits (155), Expect = 2e-10
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 5/218 (2%)
Frame = +1
Query: 250 TFYEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKY 417
+ Y+ + +KP + N+ + V IH + LVG W+ +G + ++ H+W+Y
Sbjct: 67 SLYKLQFHNVKPECLDAYNKICQEVLPKIHEGKQYPCTLVGTWNTWYGEQ-DQAVHLWRY 125
Query: 418 DN-FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELA 594
+ + EV L +++E+ + L+ ++ + W + P +YEL
Sbjct: 126 EGGYPALTEVMNKLKENQEFVNFRKARSDMLLSRKNQLLLEFSFWNEPVPRPGPNIYELR 185
Query: 595 TFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAG 774
++Q++PG WG+ + RA+ Q + VG F ++ G L VH LW + +R
Sbjct: 186 SYQLRPGTMIEWGNYWARAI--RFRQDSNEAVGGFFSQIGQLYMVHHLWAYKDLQTREDI 243
Query: 775 RHQSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
R+ + V +V + ++ ++ P SPL+
Sbjct: 244 RNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ 281
>ref|NP_032724.1| protein NipSnap homolog 1 [Mus musculus].
Length = 284
Score = 63.5 bits (153), Expect = 3e-10
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 5/216 (2%)
Frame = +1
Query: 256 YEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKYDN 423
Y+ + +KP + N E V +HL LVG W+ +G + ++ H+W++
Sbjct: 72 YKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQ-DQAVHLWRFSG 130
Query: 424 -FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 600
+ ++ L +KE+ E + L+ ++ + W + + +YEL T+
Sbjct: 131 GYPALMDCMNKLKNNKEYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPRAGPNIYELRTY 190
Query: 601 QMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAGRH 780
++KPG WG+ + RA+ Q + VG F ++ G L VH LW + SR R+
Sbjct: 191 KLKPGTMIEWGNNWARAI--KYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 248
Query: 781 QSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
+ V +V + ++ ++ P SPL+
Sbjct: 249 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,452,220
Number of extensions: 1004597
Number of successful extensions: 2564
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2553
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 296
Effective length of database: 12,493,815
Effective search space: 3698169240
Effective search space used: 3698169240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002944
(1202 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359199.1| PREDICTED: protein NipSnap homolog 1 isoform... 64 2e-10
Alignment gi|XP_001928943.1| PREDICTED: protein NipSnap homolog 1 isoform... 64 2e-10
Alignment gi|XP_003124510.2| PREDICTED: hypothetical protein LOC100520953... 56 5e-08
>ref|XP_003359199.1| PREDICTED: protein NipSnap homolog 1 isoform 2 [Sus scrofa].
Length = 264
Score = 63.9 bits (154), Expect = 2e-10
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 5/216 (2%)
Frame = +1
Query: 256 YEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKYDN 423
Y+ + +KP + N E V +HL LVG W+ +G + ++ H+W++
Sbjct: 52 YKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQ-DQAVHLWRFSG 110
Query: 424 -FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 600
+ ++ L +KE+ E + L+ ++ + W + + +YEL T+
Sbjct: 111 GYPALMDCMNKLKNNKEYLEFRKERSQMLLSRRNQMLLEFSFWNEPQPRAGPNIYELRTY 170
Query: 601 QMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAGRH 780
++KPG WG+ + RA+ Q + VG F ++ G L VH LW + SR R+
Sbjct: 171 KLKPGTMIEWGNNWARAI--KYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 228
Query: 781 QSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
+ V +V + ++ ++ P SPL+
Sbjct: 229 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 264
>ref|XP_001928943.1| PREDICTED: protein NipSnap homolog 1 isoform 1 [Sus scrofa].
Length = 284
Score = 63.9 bits (154), Expect = 2e-10
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 5/216 (2%)
Frame = +1
Query: 256 YEFRTDYLKPSKM---NEFLENVKKNIHL-RTARSELVGYWSVEFGGRLNKVFHIWKYDN 423
Y+ + +KP + N E V +HL LVG W+ +G + ++ H+W++
Sbjct: 72 YKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQ-DQAVHLWRFSG 130
Query: 424 -FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATF 600
+ ++ L +KE+ E + L+ ++ + W + + +YEL T+
Sbjct: 131 GYPALMDCMNKLKNNKEYLEFRKERSQMLLSRRNQMLLEFSFWNEPQPRAGPNIYELRTY 190
Query: 601 QMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFHAEYGMLNRVHVLWWNESADSRAAGRH 780
++KPG WG+ + RA+ Q + VG F ++ G L VH LW + SR R+
Sbjct: 191 KLKPGTMIEWGNNWARAI--KYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRN 248
Query: 781 QSHEDPRVVAAVRESVNFLGSQQNMLLTPTSFSPLK 888
+ V +V + ++ ++ P SPL+
Sbjct: 249 AAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284
>ref|XP_003124510.2| PREDICTED: hypothetical protein LOC100520953 [Sus scrofa].
Length = 465
Score = 55.8 bits (133), Expect = 5e-08
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = +1
Query: 352 LVGYWSVEFGGRLNKVFHIWKYDN-FAHRIEVQKALAKDKEWQEQFLIPNLALIDKQESE 528
LVG W+ +G + ++ H+W+Y+ + EV L +++E+ + L+ ++
Sbjct: 47 LVGTWNTWYGEQ-DQAVHLWRYEGGYPALTEVMNKLKENQEFSRFRKERSNMLLSRKNQL 105
Query: 529 ITYLVPWCKLEKPPKEG--VYELATFQMKPGGPALWGDPFKRAVHTHINQGYAKLVGVFH 702
+ W E P+ G +YEL ++Q++PG WG+ + RA+ Q + VG F
Sbjct: 106 LLEFSFWN--EPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAI--RFRQDGNEAVGGFF 161
Query: 703 AEYGMLNRVHVLWWNESADSRAAGRHQSH 789
++ G L VH LW E S G +H
Sbjct: 162 SQIGELYMVHHLWGAERDRSGFHGSWGAH 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,079,764
Number of extensions: 743695
Number of successful extensions: 2026
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2022
Number of HSP's successfully gapped: 3
Length of query: 400
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,829,335
Effective search space: 2639971165
Effective search space used: 2639971165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002944
(1202 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 710 0.0
Sscrofa_Chr06 88 1e-14
Sscrofa_ChrX 72 8e-10
Sscrofa_Chr15 70 3e-09
gb|GL893997.2| Sus scrofa unplaced genomic scaffold ChrUScaf1882 68 1e-08
Sscrofa_Chr16 68 1e-08
Sscrofa_Chr11 68 1e-08
Sscrofa_Chr09 68 1e-08
Sscrofa_Chr07 68 1e-08
Sscrofa_Chr03 68 1e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 710 bits (358), Expect = 0.0
Identities = 384/391 (98%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 814 gttcgggaaagtgtcaacttccttgggtctcagcagaatatgcttctgactcctacatca 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275535215 gttcgggaaagtgtcaacttccttgggtctcagcagaatatgcttctgactcctacatca 275535156
Query: 874 ttttcacctttgaaatagttttctactaaaatacaaagcatttcatgaactgctgcaaga 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275535155 ttttcacctttgaaatagttttctactaaaatacaaagcatttcatgaactgctgcaaga 275535096
Query: 934 tatgtctgctaatggtgcttgatttttcctaaa-gattctcatttttatttgaaggaggt 992
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 275535095 tatgtctgctaatggtgcttgatttttcctaaaagattctcatttttatttgaaggaggt 275535036
Query: 993 ggtaagctattgctatgtcccttgcagttttaaaa-ccaccgctgtccactgtcaccacc 1051
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275535035 ggtaagctattgctatgtcccttgcagttttaaaaaccaccgctgtccactgtcaccacc 275534976
Query: 1052 acctncagaaacagtctattcattttccccttgacattttagtatctgctagacattaaa 1111
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275534975 acctcaagaaacagtctattcattttccccttgacattttagtatctgctagacattaaa 275534916
Query: 1112 aatagttgctattggagttctcctgangtgcagtggtataaggatttggtggtgtcactg 1171
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 275534915 aatagttgctattggagttctcctgaggtgcagtggtataaggatttggtggtgtcactg 275534856
Query: 1172 cantggcttgggtcaatgctgtgacatgggt 1202
|| |||||||||||| |||||||||||||||
Sbjct: 275534855 cagtggcttgggtcagtgctgtgacatgggt 275534825
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 204 tcaggtatgctcatcttttgccacaggacccagacaatacgatggaacattctatgaatt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275543771 tcaggtatgctcatcttttgccacaggacccagacaatacgatggaacattctatgaatt 275543712
Query: 264 tcgtaccgattatcttaagccctcaaagatgaatgagttcctggaaaatgttaagaaaaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275543711 tcgtaccgattatcttaagccctcaaagatgaatgagttcctggaaaatgttaagaaaaa 275543652
Query: 324 cattcatcttcggacagctcgctctgaattggttggatactggagtgtagaatttggagg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275543651 cattcatcttcggacagctcgctctgaattggttggatactggagtgtagaatttggagg 275543592
Query: 384 cagactgaataaggtgtttcatatttggaagtatg 418
|||||||||||||||||||||||||||||||||||
Sbjct: 275543591 cagactgaataaggtgtttcatatttggaagtatg 275543557
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 3 aggaggaggagccgagcctggtccgagcctgtgttttcccctggtgcaggcgctgttcct 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275546967 aggaggaggagccgagcctggtccgagcctgtgttttcccctggtgcaggcgctgttcct 275546908
Query: 63 tgcagagcggaagccataggaggaggaatttaaggacgaagaccggctgctacccccctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275546907 tgcagagcggaagccataggaggaggaatttaaggacgaagaccggctgctacccccctc 275546848
Query: 123 agcactccaagctgcaagctgcgccatgcttcctctccgcagtggcctaactaggattct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275546847 agcactccaagctgcaagctgcgccatgcttcctctccgcagtggcctaactaggattct 275546788
Query: 183 gtccccgcggatgctagctactcaggtatg 212
||||||||||||||||||||||||||||||
Sbjct: 275546787 gtccccgcggatgctagctactcaggtatg 275546758
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 3 aggaggaggagccgagcctggtccgagcctgtgttttcccctggtgcaggcgctgttcct 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275845963 aggaggaggagccgagcctggtccgagcctgtgttttcccctggtgcaggcgctgttcct 275846022
Query: 63 tgcagagcggaagccataggaggaggaatttaaggacgaagaccggctgctacccccctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275846023 tgcagagcggaagccataggaggaggaatttaaggacgaagaccggctgctacccccctc 275846082
Query: 123 agcactccaagctgcaagctgcgccatgcttcctctccgcagtggcctaactaggattct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275846083 agcactccaagctgcaagctgcgccatgcttcctctccgcagtggcctaactaggattct 275846142
Query: 183 gtccccgcggatgctagctactcaggtatg 212
||||||||||||||||||||||||||||||
Sbjct: 275846143 gtccccgcggatgctagctactcaggtatg 275846172
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 418 gacaattttgctcatcgaattgaagttcagaaagccttggccaaagataaggaatggcaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275541311 gacaattttgctcatcgaattgaagttcagaaagccttggccaaagataaggaatggcaa 275541252
Query: 478 gaacaatttctcattccaaatctggctcttattgataaacaggagagtgaaattacttat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275541251 gaacaatttctcattccaaatctggctcttattgataaacaggagagtgaaattacttat 275541192
Query: 538 ctggtgccatggtgcaaattagaaaaacctccaaaagaagg 578
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 275541191 ctggtgccatggtgcaaattagaaaaacctccaaaagaagg 275541151
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 576 aggagtttatgaactggctacttttcagatgaaacctggtgggccagctctgtgggggga 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275539361 aggagtttatgaactggctacttttcagatgaaacctggtgggccagctctgtgggggga 275539302
Query: 636 cccatttaaaagggcagttcacactcatatcaatcaaggctatgcaaaattagttggagt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275539301 cccatttaaaagggcagttcacactcatatcaatcaaggctatgcaaaattagttggagt 275539242
Query: 696 attccatgcagaatatggcatgctcaacagag 727
||||||||||||||||||||||||||||||||
Sbjct: 275539241 attccatgcagaatatggcatgctcaacagag 275539210
Score = 228 bits (115), Expect = 6e-57
Identities = 190/215 (88%)
Strand = Plus / Minus
Query: 204 tcaggtatgctcatcttttgccacaggacccagacaatacgatggaacattctatgaatt 263
||||||||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||| ||
Sbjct: 275518888 tcaggtatgttcatcttttgctacaggccccagacaatatgatagaacattctatgagtt 275518829
Query: 264 tcgtaccgattatcttaagccctcaaagatgaatgagttcctggaaaatgttaagaaaaa 323
|||||| ||| ||||| || ||||||||||||||||| |||||| | || ||||||||
Sbjct: 275518828 tcgtacttattgccttaaaccttcaaagatgaatgagtttctggaagaggtaaagaaaaa 275518769
Query: 324 cattcatcttcggacagctcgctctgaattggttggatactggagtgtagaatttggagg 383
||| |||||||||||||||| |||||| ||| |||||| ||||| |||||||||||||||
Sbjct: 275518768 catacatcttcggacagctcactctgagttgattggattctggactgtagaatttggagg 275518709
Query: 384 cagactgaataaggtgtttcatatttggaagtatg 418
|||| ||||||| |||||||| |||||||||||||
Sbjct: 275518708 cagaatgaataaagtgtttcacatttggaagtatg 275518674
Score = 190 bits (96), Expect = 1e-45
Identities = 117/124 (94%)
Strand = Plus / Minus
Query: 455 tggccaaagataaggaatggcaagaacaatttctcattccaaatctggctcttattgata 514
|||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| |||
Sbjct: 275516864 tggccaaagataaggaatggcaagaaaaatttctcatcccaaatctggctcatatttata 275516805
Query: 515 aacaggagagtgaaattacttatctggtgccatggtgcaaattagaaaaacctccaaaag 574
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 275516804 aacaagagattgaaattacttatctggtgccatggtgcaaattagaaaaacctcctaaag 275516745
Query: 575 aagg 578
||||
Sbjct: 275516744 aagg 275516741
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 726 agttcacgttctttggtggaacgagagtgcagatagccgtgcagccgggagacatcagtc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275535458 agttcacgttctttggtggaacgagagtgcagatagccgtgcagccgggagacatcagtc 275535399
Query: 786 tcatgaggatcccagggtcgtggcagctg 814
|||||||||||||||||||||||||||||
Sbjct: 275535398 tcatgaggatcccagggtcgtggcagctg 275535370
Score = 145 bits (73), Expect = 6e-32
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 726 agttcacgttctttggtggaacgagagtgcagatagccgtgcagccgggagacatcagtc 785
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct: 275512846 agttcacgttctttggtggcacgagagtgcagacagtcgtgcagccgggagacatcagtc 275512787
Query: 786 tcatgaggatcccagggtcgtggcagctg 814
||| |||||||||||||||||||||||||
Sbjct: 275512786 tcacgaggatcccagggtcgtggcagctg 275512758
Score = 107 bits (54), Expect = 1e-20
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 814 gttcgggaaagtgtcaacttccttgggtctcagcagaatatgcttctgactcctacatca 873
||||||||||||||||| | ||| | ||||||||| |||||| |||||| ||||||||||
Sbjct: 275512667 gttcgggaaagtgtcaattacctagtgtctcagcaaaatatgtttctgattcctacatca 275512608
Query: 874 ttttcacctttgaaatagttttctactaaaatacaaagcatttcatgaac 923
| ||| || |||||||| ||||| ||| ||| ||||||||||||||||||
Sbjct: 275512607 tattcgccattgaaataattttccactgaaacacaaagcatttcatgaac 275512558
Score = 69.9 bits (35), Expect = 3e-09
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 576 aggagtttatgaactggctacttttcagatgaaacctggtgggccagctctgtgggggga 635
|||||| ||||| ||| || ||||||||||||||| || |||||||| |||||||| ||
Sbjct: 275514727 aggagtctatgagttggttatttttcagatgaaaccaggagggccagccctgtggggtga 275514668
Query: 636 cccatttaaaagggcagtt 654
|||||||||||||||||
Sbjct: 275514667 tgcatttaaaagggcagtt 275514649
Score = 67.9 bits (34), Expect = 1e-08
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 1123 ttggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgg 1182
|||||||||||||| ||||||||| ||||||| ||| |||||||||| ||||||||
Sbjct: 72852540 ttggagttctcctgtggtgcagtgggttaaggatccagtgttgtcactgcagtggcttgg 72852481
Query: 1183 gtcaatgctgtg 1194
|||| |||||||
Sbjct: 72852480 gtcattgctgtg 72852469
Score = 67.9 bits (34), Expect = 1e-08
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 1123 ttggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgg 1182
|||||||||||||| ||||||||| ||||||| ||| |||||||||| ||||||||
Sbjct: 72937890 ttggagttctcctgtggtgcagtgggttaaggatccagtgttgtcactgcagtggcttgg 72937831
Query: 1183 gtcaatgctgtg 1194
|||| |||||||
Sbjct: 72937830 gtcattgctgtg 72937819
Score = 65.9 bits (33), Expect = 5e-08
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1129 ttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgggtcaat 1188
|||||||| ||||||||| |||| || ||||| |||||||||| |||||||||||| |
Sbjct: 143329483 ttctcctgtggtgcagtggattaagcatctggtgttgtcactgcagtggcttgggtcact 143329542
Query: 1189 gctgtgacatg 1199
|||||| ||||
Sbjct: 143329543 gctgtgtcatg 143329553
Score = 63.9 bits (32), Expect = 2e-07
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgg 1200
||||||| |||||||||||||||| ||||||||| || ||||||| |||||
Sbjct: 33719514 taaggatctggtggtgtcactgcagtggcttgggccattgctgtggcatgg 33719464
Score = 63.9 bits (32), Expect = 2e-07
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1125 ggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgggt 1184
||||||||| || ||||||||| ||||||| ||||| |||||||||| ||||||||||
Sbjct: 92423889 ggagttctcttgtagtgcagtgggttaaggatctggtgttgtcactgcagtggcttgggt 92423948
Query: 1185 caatgctgtg 1194
| |||||||
Sbjct: 92423949 cgctgctgtg 92423958
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1158 tggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||| |||||||||| |||||||||||| ||||||| |||||||
Sbjct: 17408912 tggtgttgtcactgcagtggcttgggtcactgctgtggcatgggt 17408956
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 30649428 taaggatctggtgttgtcactgcattggcttgggtcactgctgtg 30649384
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||||||||| |||||||||| | |||||||||| |||||||
Sbjct: 58641273 taaggatttggtgttgtcactgcagtagcttgggtcactgctgtg 58641229
>Sscrofa_Chr06
|| Length = 157765593
Score = 87.7 bits (44), Expect = 1e-14
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 1125 ggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgggt 1184
|||||||||||| ||||||||| ||||||| |||||||||||||||| || |||||||
Sbjct: 79869852 ggagttctcctgtggtgcagtggggtaaggatctggtggtgtcactgcagtgccttgggt 79869911
Query: 1185 caatgctgtgacatgggt 1202
|| ||||||| |||||||
Sbjct: 79869912 cactgctgtggcatgggt 79869929
Score = 75.8 bits (38), Expect = 5e-11
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||||||||| |||||||||| |||||||||||| ||||||| |||||||
Sbjct: 73302795 taaggatttggtgttgtcactgcagtggcttgggtcactgctgtggcatgggt 73302847
Score = 73.8 bits (37), Expect = 2e-10
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 1139 gtgcagtggtataaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacat 1198
||||||||| ||||||| |||||||||||||||| |||||||||||| |||| || |||
Sbjct: 92580736 gtgcagtgggttaaggatctggtggtgtcactgcagtggcttgggtcactgctatggcat 92580677
Query: 1199 gggt 1202
||||
Sbjct: 92580676 gggt 92580673
Score = 63.9 bits (32), Expect = 2e-07
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 1123 ttggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgg 1182
||||||||||| || ||||||||| ||||||| ||||| |||||||||| ||||||||
Sbjct: 55991793 ttggagttctcttgtggtgcagtgggttaaggatctggtgttgtcactgcagtggcttgg 55991734
Query: 1183 gt 1184
||
Sbjct: 55991733 gt 55991732
Score = 61.9 bits (31), Expect = 7e-07
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtga 1195
||||||| ||||| |||||||||| |||||||||||| ||||||||
Sbjct: 90735440 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtga 90735395
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 75678409 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 75678453
Score = 60.0 bits (30), Expect = 3e-06
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||| ||||| ||||||||| | |||||||||| |||||||||||||||
Sbjct: 75954529 taaggatctggtgttgtcactgctatagcttgggtcactgctgtgacatgggt 75954477
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
|||||| |||||| |||||||||| |||||||||||| |||||||
Sbjct: 108305057 taaggacttggtgttgtcactgcagtggcttgggtcactgctgtg 108305013
>Sscrofa_ChrX
|| Length = 144288218
Score = 71.9 bits (36), Expect = 8e-10
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgg 1200
||||||||||||| |||||||||| |||||||||||| ||||||| |||||
Sbjct: 24458672 taaggatttggtgttgtcactgcagtggcttgggtcactgctgtggcatgg 24458622
Score = 63.9 bits (32), Expect = 2e-07
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1164 tgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
|||||||||| |||||||||||| |||||||||||||||
Sbjct: 7914114 tgtcactgcagtggcttgggtcactgctgtgacatgggt 7914076
Score = 63.9 bits (32), Expect = 2e-07
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1125 ggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgggt 1184
|||||||||||| ||||||||| ||||||| ||| |||||||||| ||||||||||
Sbjct: 21079022 ggagttctcctgtggtgcagtgggttaaggatatggca-tgtcactgcagtggcttgggt 21079080
Query: 1185 caatgctgtgacatgggt 1202
|| ||||||| |||||||
Sbjct: 21079081 cactgctgtggcatgggt 21079098
Score = 63.9 bits (32), Expect = 2e-07
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1164 tgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
|||||||||| |||||||||||| |||||||||||||||
Sbjct: 101646013 tgtcactgcagtggcttgggtcactgctgtgacatgggt 101646051
Score = 61.9 bits (31), Expect = 7e-07
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatg 1199
||||||| |||||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 103592873 taaggatctggtggtgtcactgcagtggcttgggtccctgctgtggcatg 103592824
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 48615970 taaggatttggtgttgtcactgcagtggcttgggtcgctgctgtg 48616014
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 64447849 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 64447805
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 127517145 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 127517189
>Sscrofa_Chr15
|| Length = 157681621
Score = 69.9 bits (35), Expect = 3e-09
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1139 gtgcagtggtataaggatttggtggtgtcactgcantggcttgggtcaatgctg 1192
|||||||||||||||||| |||||||||||||||| | |||| ||||| |||||
Sbjct: 62343233 gtgcagtggtataaggatctggtggtgtcactgcagtagcttaggtcactgctg 62343286
Score = 61.9 bits (31), Expect = 7e-07
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 1122 attggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttg 1181
||||||||||||||| ||||||||| ||||||| ||| |||||||||| ||||||
Sbjct: 55166544 attggagttctcctgtggtgcagtggattaaggatccagtgttgtcactgcagtggctta 55166485
Query: 1182 ggtcaatgctgtg 1194
||||| |||||||
Sbjct: 55166484 ggtcactgctgtg 55166472
>gb|GL893997.2| Sus scrofa unplaced genomic scaffold ChrUScaf1882
Length = 81501
Score = 67.9 bits (34), Expect = 1e-08
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1123 ttggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgg 1182
|||||||||||||| ||||||||| ||||||| ||| |||||||||| ||||||||
Sbjct: 72187 ttggagttctcctgtggtgcagtgggttaaggatccagtgttgtcactgcagtggcttgg 72246
Query: 1183 gtcaatgctgtg 1194
|||| |||||||
Sbjct: 72247 gtcattgctgtg 72258
>Sscrofa_Chr16
|| Length = 86898991
Score = 67.9 bits (34), Expect = 1e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||| ||||| |||||||||| |||||||||||| ||||||| |||||||
Sbjct: 21800255 taaggatctggtgttgtcactgcagtggcttgggtcattgctgtggcatgggt 21800307
Score = 67.9 bits (34), Expect = 1e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct: 51396917 taaggatctggtggtgtcactgcagtggcttgggtcactgctgtg 51396961
Score = 65.9 bits (33), Expect = 5e-08
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1139 gtgcagtggtataaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 9658504 gtgcagtgggttaaggatttggtgttgtcactgcagtggcttgggtccctgctgtg 9658449
Score = 60.0 bits (30), Expect = 3e-06
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtca 1186
||||||||||||| |||||||||| ||||||||||||
Sbjct: 39432559 taaggatttggtgttgtcactgcagtggcttgggtca 39432523
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
|||||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 68839566 taaggatttggtcttgtcactgcaatggcttgggtcactgctgtg 68839610
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
|||||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 68911301 taaggatttggtcttgtcactgcaatggcttgggtcactgctgtg 68911345
>Sscrofa_Chr11
|| Length = 87690581
Score = 67.9 bits (34), Expect = 1e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||||||||||||||| |||| ||||||||||| ||||||| |||||||
Sbjct: 42826518 taaggatttggtggtgtcattgcagtggcttgggtccctgctgtggcatgggt 42826466
Score = 67.9 bits (34), Expect = 1e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1142 cagtggtataaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
|||||| |||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct: 69736959 cagtgggataaggatctggtggtgtcactgctgtggcttgggtcactgctgtg 69736907
Score = 67.9 bits (34), Expect = 1e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1142 cagtggtataaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
|||||| |||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct: 69927135 cagtgggataaggatctggtggtgtcactgctgtggcttgggtcactgctgtg 69927187
>Sscrofa_Chr09
|| Length = 153670197
Score = 67.9 bits (34), Expect = 1e-08
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1125 ggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgggt 1184
||||||||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||
Sbjct: 28897784 ggagttctcctgaggtgcagtgggttaaggatctggtgtagtcactgcagtggcttgggt 28897725
Score = 67.9 bits (34), Expect = 1e-08
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct: 121947746 taaggatctggtggtgtcactgcagtggcttgggtcactgctgtg 121947702
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1158 tggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||| |||||||||| |||||||||||| ||||||| |||||||
Sbjct: 24169920 tggtgttgtcactgcagtggcttgggtcactgctgtggcatgggt 24169964
Score = 60.0 bits (30), Expect = 3e-06
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1125 ggagttctcctgangtgcagtggtataaggatttggtggtgtcactgcantggcttgggt 1184
|||||||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||
Sbjct: 28781209 ggagttctcctgcggtgcagtgggttaaggatctggtgtagtcactgcagtggcttgggt 28781268
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 57894233 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 57894189
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 88495757 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 88495713
>Sscrofa_Chr07
|| Length = 134764511
Score = 67.9 bits (34), Expect = 1e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||| ||||||||||||||| |||||||||||| ||||||| |||||||
Sbjct: 80366966 taaggatctggtggtgtcactgctgtggcttgggtcactgctgtggcatgggt 80366914
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 80232970 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 80233014
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 102735205 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 102735161
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 115265879 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 115265835
>Sscrofa_Chr03
|| Length = 144787322
Score = 67.9 bits (34), Expect = 1e-08
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1139 gtgcagtggtataaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacat 1198
|||||||||| ||||||| ||||| |||||||||| ||||||||||| ||||||| |||
Sbjct: 10793374 gtgcagtggtttaaggatgtggtgttgtcactgcagtggcttgggtcgctgctgtggcat 10793315
Query: 1199 g 1199
|
Sbjct: 10793314 g 10793314
Score = 61.9 bits (31), Expect = 7e-07
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1165 gtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||||| |||||||||||| |||||||||||||||
Sbjct: 103175093 gtcactgcagtggcttgggtcactgctgtgacatgggt 103175056
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 13163342 taaggatctggtgttgtcactgcaatggcttgggtcactgctgtg 13163386
Score = 60.0 bits (30), Expect = 3e-06
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
||||||| ||||||||||||||| |||| ||||||| ||||||| |||||||
Sbjct: 38884330 taaggatctggtggtgtcactgcggtggcgtgggtcactgctgtggcatgggt 38884278
Score = 60.0 bits (30), Expect = 3e-06
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtgacatgggt 1202
|||||||| |||| ||||||||| |||||||||| | |||||||||||||||
Sbjct: 76218215 taaggattcggtgttgtcactgctgtggcttgggttactgctgtgacatgggt 76218267
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| |||||| ||||||||| |||||||||||| |||||||
Sbjct: 77734987 taaggatctggtggggtcactgcagtggcttgggtcactgctgtg 77734943
Score = 60.0 bits (30), Expect = 3e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1150 taaggatttggtggtgtcactgcantggcttgggtcaatgctgtg 1194
||||||| ||||| |||||||||| |||||||||||| |||||||
Sbjct: 119677034 taaggatctggtgttgtcactgcagtggcttgggtcactgctgtg 119677078
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,531,903
Number of extensions: 5716
Number of successful extensions: 5716
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 5714
Number of HSP's successfully gapped: 100
Length of query: 1202
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1181
Effective length of database: 2,808,413,156
Effective search space: 3316735937236
Effective search space used: 3316735937236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)