Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002948
(1629 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [B... 599 e-171
Alignment gi|NP_001095693.1| chromodomain Y-like protein [Bos taurus]. 182 1e-45
Alignment gi|NP_001157257.1| chromodomain Y-like protein 2 [Bos taurus]. 169 9e-42
Alignment gi|NP_001180085.1| enoyl-CoA hydratase domain-containing protei... 87 4e-17
Alignment gi|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain... 87 4e-17
Alignment gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor... 84 4e-16
Alignment gi|NP_001106792.1| acyl-CoA-binding protein [Bos taurus]. 80 4e-15
Alignment gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 80 5e-15
Alignment gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 80 5e-15
Alignment gi|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bo... 73 8e-13
>ref|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [Bos taurus].
Length = 393
Score = 599 bits (1544), Expect = e-171
Identities = 305/396 (77%), Positives = 336/396 (84%), Gaps = 2/396 (0%)
Frame = +2
Query: 38 MARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPG 217
MA + G A RWFSG PLQV PA LHV GPAM ASQ+DF A++QVKLLKEDPG
Sbjct: 1 MAGLAGRFARRWFSGLLGSPLQV---PALGLHVRGPAMLASQKDFNNAVSQVKLLKEDPG 57
Query: 218 NEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVXXX 397
NEVKLKLYALYKQATEGPCN PKPGMLDFI K KWDAWNALG+L KE ARQNYVDLV
Sbjct: 58 NEVKLKLYALYKQATEGPCNVPKPGMLDFINKTKWDAWNALGSLSKEAARQNYVDLVSRL 117
Query: 398 XXXXXXQV--TPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEA 571
PAAD+KQ ESDSLVVTSEDGITTIRLNRPAKKNALTTQMY DI+ AL+A
Sbjct: 118 SASSESPSPEAPAADRKQPESDSLVVTSEDGITTIRLNRPAKKNALTTQMYHDIIAALQA 177
Query: 572 ASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPL 751
AS+D S ITVLTGSGDYYCSGNDLTNF +P +EE A+S+A LLRDFV+ FIDFPKPL
Sbjct: 178 ASKDESAITVLTGSGDYYCSGNDLTNFTHLPAGGLEEMARSAAALLRDFVNCFIDFPKPL 237
Query: 752 IAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAE 931
+AVVNGPAVGISVT+LGLFDVVYA+DRA+FHTPFSHLGQSPEGCSSY FPK+MG SKAAE
Sbjct: 238 VAVVNGPAVGISVTILGLFDVVYATDRASFHTPFSHLGQSPEGCSSYTFPKIMGSSKAAE 297
Query: 932 MLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKE 1111
ML+FGKKLTA+EA AQGLVT VFPD TFQKEVWARLKAY+KLPPNAMRI+K+++R++EKE
Sbjct: 298 MLLFGKKLTAQEACAQGLVTEVFPDGTFQKEVWARLKAYSKLPPNAMRISKQIIRNREKE 357
Query: 1112 KLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
KLHAVNAEES VL ERW SDEC+ AI +FLS+KAKL
Sbjct: 358 KLHAVNAEESSVLRERWQSDECMNAIASFLSRKAKL 393
>ref|NP_001095693.1| chromodomain Y-like protein [Bos taurus].
Length = 544
Score = 182 bits (461), Expect = 1e-45
Identities = 97/252 (38%), Positives = 158/252 (62%), Gaps = 2/252 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ +++ AL A+ D S++ +L+ G +C G
Sbjct: 290 IVVRKQDGFTHILLSTKSSENNSLNPEVMKELQSALSTAAADDSKLVLLSAVGSVFCCGL 349
Query: 638 DLTNF-KDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDV 814
D F + + D+ E A+ A +R+FV+ FI F KP+I VNGPA+G+ ++L L DV
Sbjct: 350 DFIYFIRRLTDDRKRESARM-AEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDV 408
Query: 815 VYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTA 994
V+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+
Sbjct: 409 VWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQ 468
Query: 995 VFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDE 1174
VF TF +EV R+K A P + +K L+R + +L N E VL + W S +
Sbjct: 469 VFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMRLELEQANERECEVLKKIWGSAQ 528
Query: 1175 CITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 529 GMDSMLKYLQRK 540
>ref|NP_001157257.1| chromodomain Y-like protein 2 [Bos taurus].
Length = 505
Score = 169 bits (427), Expect = 9e-42
Identities = 92/251 (36%), Positives = 151/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV E+G T I L+ + + NALT ++ +++ RAL A+ D S++ +L+ G +CSG
Sbjct: 251 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGL 310
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D + + + A +RDFV FI F KP++ +NGPA+G+ ++L L D+V
Sbjct: 311 DYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIV 370
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+AS++A F TP++ + +P GCSSY FP+++G + A EML G+KLTA+EA ++GLV+ V
Sbjct: 371 WASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQV 430
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A + +K L+R + L VN +E +L + W S +
Sbjct: 431 FWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLRSVLEDVNEKECIMLKQLWSSSKG 490
Query: 1178 ITAIVAFLSKK 1210
+ ++ ++L K
Sbjct: 491 LDSLFSYLQDK 501
>ref|NP_001180085.1| enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Bos
taurus].
Length = 300
Score = 87.0 bits (214), Expect = 4e-17
Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 6/255 (2%)
Frame = +2
Query: 464 VVTSEDGITTIRLNRPAKKNALTTQMYRDIMRAL--EAASEDSSRITVLTGSGDYYCSGN 637
+ +DGI +I L+ P ++NAL+ M + + + EA S+D ++ +++ G + SG+
Sbjct: 49 IARQQDGIRSIVLSDPKRRNALSLAMLKSLQSDILHEAESQDL-KVIIISAEGPVFSSGH 107
Query: 638 DLTNFKDIP-PDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDV 814
DL D PD E Q+ + ++ + P P+IA+VNG A L+ D+
Sbjct: 108 DLKELTDEQGPDYHAEVFQTCSEVMMLIQNH----PVPIIAMVNGLATAAGCQLVASCDI 163
Query: 815 VYASDRATFHTPFSHLG---QSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGL 985
ASD+++F P ++G +P P+ + A EML G+ ++A+EAL GL
Sbjct: 164 AVASDKSSFAMPGVNIGVFCSTPAVALGRAVPRKV----ALEMLFTGEPISAQEALLHGL 219
Query: 986 VTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWV 1165
++ V P++ ++E + A L + + + K Q + L S+ + +
Sbjct: 220 LSRVVPEERLEEETMRIARKVASLSRSVLSLGKAAFYRQLAQDLRTAYHLTSQTMVDNLG 279
Query: 1166 SDECITAIVAFLSKK 1210
+ + AFL K+
Sbjct: 280 LPDGQEGVKAFLQKR 294
>ref|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain containing 3-like [Bos
taurus].
Length = 300
Score = 87.0 bits (214), Expect = 4e-17
Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 6/255 (2%)
Frame = +2
Query: 464 VVTSEDGITTIRLNRPAKKNALTTQMYRDIMRAL--EAASEDSSRITVLTGSGDYYCSGN 637
+ +DGI +I L+ P ++NAL+ M + + + EA S+D ++ +++ G + SG+
Sbjct: 49 IARQQDGIRSIVLSDPKRRNALSLAMLKSLQSDILHEAESQDL-KVIIISAEGPVFSSGH 107
Query: 638 DLTNFKDIP-PDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDV 814
DL D PD E Q+ + ++ + P P+IA+VNG A L+ D+
Sbjct: 108 DLKELTDEQGPDYHAEVFQTCSEVMMLIQNH----PVPIIAMVNGLATAAGCQLVASCDI 163
Query: 815 VYASDRATFHTPFSHLG---QSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGL 985
ASD+++F P ++G +P P+ + A EML G+ ++A+EAL GL
Sbjct: 164 AVASDKSSFAMPGVNIGVFCSTPAVALGRAVPRKV----ALEMLFTGEPISAQEALLHGL 219
Query: 986 VTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWV 1165
++ V P++ ++E + A L + + + K Q + L S+ + +
Sbjct: 220 LSRVVPEERLEEETMRIARKVASLSRSVLSLGKAAFYRQLAQDLRTAYHLTSQTMVDNLG 279
Query: 1166 SDECITAIVAFLSKK 1210
+ + AFL K+
Sbjct: 280 LPDGQEGVKAFLQKR 294
>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
Length = 290
Score = 84.0 bits (206), Expect = 4e-16
Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 5/236 (2%)
Frame = +2
Query: 464 VVTSEDG----ITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYC 628
++T++ G + I+LNRP NAL + ++ +AL+A ED + VLTG +
Sbjct: 36 IITAKKGRNSNVGLIQLNRPKALNALCNGLIVELNQALQAFEEDPAVGAIVLTGGEKVFA 95
Query: 629 SGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLF 808
+G D+ + + + S L D+ KP+IA VNG A+G L +
Sbjct: 96 AGADIKEMQSL----TFQNCYSGGFL--SHWDQLTRVKKPVIAAVNGYALGGGCELAMMC 149
Query: 809 DVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLV 988
D++YA ++A F P +G P + + +G S A EM++ G +++A++A GLV
Sbjct: 150 DIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLV 209
Query: 989 TAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAE 1156
+ +FP +T +E ++ K+ N+ +++ KE +VNA LAE
Sbjct: 210 SKIFPVETVVEEA---IQCAEKIASNS-----KIVTAMAKE---SVNAAFEMTLAE 254
>ref|NP_001106792.1| acyl-CoA-binding protein [Bos taurus].
Length = 87
Score = 80.5 bits (197), Expect = 4e-15
Identities = 41/77 (53%), Positives = 49/77 (63%)
Frame = +2
Query: 158 SQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNA 337
SQ +F KA +VK LK P +E L +Y+ YKQAT G N +PGMLDF KAKWDAWN
Sbjct: 2 SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNE 61
Query: 338 LGNLPKETARQNYVDLV 388
L KE A + Y+D V
Sbjct: 62 LKGTSKEDAMKAYIDKV 78
>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 80.1 bits (196), Expect = 5e-15
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 12/193 (6%)
Frame = +2
Query: 464 VVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYCSGND 640
V ++ + ++LNRP K+NA+ +R+++ +EDS R+ V++G+G + SG D
Sbjct: 58 VTAAQKHVLHVQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGID 117
Query: 641 LTNFKDIPPDKVEERAQSSAVL---LRDFVDRFID-------FPKPLIAVVNGPAVGISV 790
L D+ D ++ SA + L + R+ + PKP+IA ++G +G V
Sbjct: 118 L---MDMASDLLQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGV 174
Query: 791 TLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMG-PSKAAEMLIFGKKLTARE 967
L+ D+ Y++ + F +G + + + PK++G S E+ +K+ A E
Sbjct: 175 DLITACDIRYSTRDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADE 234
Query: 968 ALAQGLVTAVFPD 1006
AL GLV+ +FPD
Sbjct: 235 ALESGLVSRLFPD 247
>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 80.1 bits (196), Expect = 5e-15
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 12/193 (6%)
Frame = +2
Query: 464 VVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYCSGND 640
V ++ + ++LNRP K+NA+ +R+++ +EDS R+ V++G+G + SG D
Sbjct: 58 VTAAQKHVLHVQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGID 117
Query: 641 LTNFKDIPPDKVEERAQSSAVL---LRDFVDRFID-------FPKPLIAVVNGPAVGISV 790
L D+ D ++ SA + L + R+ + PKP+IA ++G +G V
Sbjct: 118 L---MDMASDLLQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGV 174
Query: 791 TLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMG-PSKAAEMLIFGKKLTARE 967
L+ D+ Y++ + F +G + + + PK++G S E+ +K+ A E
Sbjct: 175 DLITACDIRYSTRDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADE 234
Query: 968 ALAQGLVTAVFPD 1006
AL GLV+ +FPD
Sbjct: 235 ALESGLVSRLFPD 247
>ref|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bos taurus].
Length = 84
Score = 72.8 bits (177), Expect = 8e-13
Identities = 36/80 (45%), Positives = 45/80 (56%)
Frame = +2
Query: 149 MAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 328
M+ Q F A+ K L E P N LK+YA YKQAT G +PG DF+ +AKWDA
Sbjct: 1 MSDLQTRFETAVANSKNLSERPDNPTLLKIYAFYKQATTGDVEGERPGFSDFVGRAKWDA 60
Query: 329 WNALGNLPKETARQNYVDLV 388
WN L + A Q Y+DL+
Sbjct: 61 WNGLKGKTADEAMQLYIDLI 80
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,606,926
Number of extensions: 1986851
Number of successful extensions: 7364
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 7337
Number of HSP's successfully gapped: 18
Length of query: 543
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 436
Effective length of database: 14,140,958
Effective search space: 6165457688
Effective search space used: 6165457688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002948
(1629 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-C... 547 e-155
Alignment gi|XP_848773.1| PREDICTED: similar to chromodomain protein, Y c... 184 3e-46
Alignment gi|XP_856980.1| PREDICTED: similar to chromodomain protein, Y c... 184 3e-46
Alignment gi|XP_535874.2| PREDICTED: similar to chromodomain protein, Y c... 184 3e-46
Alignment gi|XP_546818.2| PREDICTED: similar to chromodomain protein, Y-l... 170 3e-42
Alignment gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito... 88 2e-17
Alignment gi|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratas... 88 3e-17
Alignment gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 80 7e-15
Alignment gi|NP_001183976.1| acyl-CoA-binding protein [Canis lupus famili... 74 4e-13
Alignment gi|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding d... 70 6e-12
>ref|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-CoA isomerase isoform 1
[Canis familiaris].
Length = 659
Score = 547 bits (1409), Expect = e-155
Identities = 280/399 (70%), Positives = 323/399 (80%), Gaps = 1/399 (0%)
Frame = +2
Query: 26 PTPAMARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLK 205
PT RVVG+ S PL ++ A LH+S AM ASQ+DF AMNQVKLLK
Sbjct: 264 PTQGRGRVVGVPPPGCRSED--APLS-LQMQALSLHMSKTAMGASQKDFESAMNQVKLLK 320
Query: 206 EDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDL 385
+DPGNEVKLKLYALYKQ TEGPCN P+PG+ D I KAKWDAWNALGNLPKETARQNYVDL
Sbjct: 321 KDPGNEVKLKLYALYKQTTEGPCNTPRPGVFDLINKAKWDAWNALGNLPKETARQNYVDL 380
Query: 386 VXXXXXXXXX-QVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRA 562
V QV P AD+KQ ++LVVTSED IT I +NRPAKKNALT QMYR+IM A
Sbjct: 381 VSDLSSSDSSSQVKPEADRKQPGYETLVVTSEDSITKIMMNRPAKKNALTIQMYREIMLA 440
Query: 563 LEAASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFP 742
LEAAS+D S I VLTG+GDYY SGNDL NF +IPP ++E+ A++ A+LLRDFV FIDFP
Sbjct: 441 LEAASKDDSTIIVLTGNGDYYSSGNDLMNFMNIPPGEMEKEAKNGAILLRDFVGCFIDFP 500
Query: 743 KPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSK 922
KPL+AV+NGPA+GISVT+LGLFD+VYASDRATFHTPF+HLGQSPEGCSSY FPK+MG +K
Sbjct: 501 KPLVAVINGPAIGISVTILGLFDLVYASDRATFHTPFTHLGQSPEGCSSYTFPKIMGQAK 560
Query: 923 AAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQ 1102
AAEML+FGKKLTAREA AQGLVT VFPD TFQKEVW RLKAY+KLP N + I+K+ +R+
Sbjct: 561 AAEMLMFGKKLTAREACAQGLVTEVFPDSTFQKEVWTRLKAYSKLPRNTLHISKQSIRNL 620
Query: 1103 EKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
EKEKLHAVNAEE+ VL ERW+SDECI A+++FLS+KAKL
Sbjct: 621 EKEKLHAVNAEENSVLQERWLSDECINAVMSFLSRKAKL 659
>ref|XP_848773.1| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform
a isoform 2 [Canis familiaris].
Length = 587
Score = 184 bits (466), Expect = 3e-46
Identities = 96/251 (38%), Positives = 154/251 (61%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ +++ AL A+ D S++ +L+ G +C G
Sbjct: 333 IVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGL 392
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 393 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 452
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+ V
Sbjct: 453 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV 512
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 513 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 572
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 573 MDSMLKYLQRK 583
>ref|XP_856980.1| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform
a isoform 3 [Canis familiaris].
Length = 586
Score = 184 bits (466), Expect = 3e-46
Identities = 96/251 (38%), Positives = 154/251 (61%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ +++ AL A+ D S++ +L+ G +C G
Sbjct: 332 IVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGL 391
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 392 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 451
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+ V
Sbjct: 452 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV 511
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 512 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 571
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 572 MDSMLKYLQRK 582
>ref|XP_535874.2| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform
a isoform 1 [Canis familiaris].
Length = 586
Score = 184 bits (466), Expect = 3e-46
Identities = 96/251 (38%), Positives = 154/251 (61%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ +++ AL A+ D S++ +L+ G +C G
Sbjct: 332 IVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGL 391
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 392 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 451
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+ V
Sbjct: 452 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV 511
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 512 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 571
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 572 MDSMLKYLQRK 582
>ref|XP_546818.2| PREDICTED: similar to chromodomain protein, Y-like 2 [Canis
familiaris].
Length = 522
Score = 170 bits (431), Expect = 3e-42
Identities = 93/251 (37%), Positives = 151/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV E+G T I L+ + + NALT ++ +++ RAL A+ D S++ +L+ G +CSG
Sbjct: 268 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGL 327
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D + + + A +RDFV FI F KP++ +NGPA+G+ ++L L D+V
Sbjct: 328 DYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIV 387
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+AS++A F TP++ + +P GCSSY FP+++G + A EML G+KLTA+EA ++GLV+ V
Sbjct: 388 WASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQV 447
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A + +K L+R K L VN +E +L + W S +
Sbjct: 448 FWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKG 507
Query: 1178 ITAIVAFLSKK 1210
+ ++ ++L K
Sbjct: 508 LDSLFSYLQDK 518
>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
(Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
hydratase 1) [Canis familiaris].
Length = 575
Score = 88.2 bits (217), Expect = 2e-17
Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 5/254 (1%)
Frame = +2
Query: 464 VVTSEDG----ITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYC 628
++T + G + I+LNRP NAL + ++ +ALEA +D + VLTG +
Sbjct: 321 IITEKKGKNSNVGLIQLNRPKALNALCNGLMMELNQALEAFEKDPAVGAIVLTGGEKAFA 380
Query: 629 SGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLF 808
+G D+ ++ + + SS L D+ KP+IA VNG A+G L +
Sbjct: 381 AGADIKEMQN----QTFQDCYSSKFL--SHWDQLAQVKKPVIAAVNGYALGGGCELAMMC 434
Query: 809 DVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLV 988
D++YA ++A F P LG P + + +G S A EM++ G +++A++A GLV
Sbjct: 435 DIIYAGEKAQFAQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLV 494
Query: 989 TAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVS 1168
+ +FP +T +E + A +AK + + L N E ++ + +
Sbjct: 495 SKIFPVETLVEEAIRCAEKIASNSKIVTAMAKESVNAAFEMTLTEGNRLEKKLFYATFAT 554
Query: 1169 DECITAIVAFLSKK 1210
++ + AF+ K+
Sbjct: 555 EDRKEGMTAFVEKR 568
>ref|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing 3
[Canis familiaris].
Length = 261
Score = 87.8 bits (216), Expect = 3e-17
Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 5/249 (2%)
Frame = +2
Query: 479 DGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYCSGNDLTNFK 655
DGI I L+ P K+NAL+ M + + L SE R+ +++ G + SG+DL
Sbjct: 15 DGIRNIVLSDPKKRNALSLAMLKSLQTDLLHESESKDLRVIIISAEGPVFSSGHDLKELT 74
Query: 656 DI-PPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDR 832
D PD E Q+ + ++ + P P+IA+VNG A L+ D+ ASD+
Sbjct: 75 DERSPDYHAEVFQTCSEVMMLIQNH----PVPIIAMVNGLATAAGCQLVASCDIAVASDK 130
Query: 833 ATFHTPFSHLG---QSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFP 1003
++F TP ++G +P P+ + A EML G+ ++A+EAL GL++ V P
Sbjct: 131 SSFATPGVNIGLFCSTPGVALGRAVPRKV----ALEMLFTGEPISAQEALLHGLLSKVVP 186
Query: 1004 DDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECIT 1183
+ ++E + A L + + K Q + L S+ + + +
Sbjct: 187 AEQLEEETMRIARKIASLSRRVVSLGKAAFYRQLPQDLRTAYHLTSQTMVDNVALQDGQE 246
Query: 1184 AIVAFLSKK 1210
I AF+ K+
Sbjct: 247 GIKAFIQKR 255
>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 1 [Canis familiaris].
Length = 328
Score = 79.7 bits (195), Expect = 7e-15
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 12/193 (6%)
Frame = +2
Query: 464 VVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASED-SSRITVLTGSGDYYCSGND 640
V ++ I ++LNRP K+NA+ +R+++ ++D R V++G+G + +G D
Sbjct: 60 VTAAQKHILHVQLNRPEKRNAMNKAFWREMVECFNKIAQDPDCRAVVISGAGKVFTAGID 119
Query: 641 LTNFKDIPPDKVEERAQSSAVL---LRDFVDRFID-------FPKPLIAVVNGPAVGISV 790
L D+ + ++ + A + LR+ + R+ + PKP+IA ++G +G V
Sbjct: 120 L---MDMASEILQPQGDDVARISWNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGV 176
Query: 791 TLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFG-KKLTARE 967
L+ D+ Y + A F +G + + + PK++G L F + + A E
Sbjct: 177 DLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADE 236
Query: 968 ALAQGLVTAVFPD 1006
ALA GLV+ VFPD
Sbjct: 237 ALASGLVSRVFPD 249
>ref|NP_001183976.1| acyl-CoA-binding protein [Canis lupus familiaris].
Length = 87
Score = 73.9 bits (180), Expect = 4e-13
Identities = 38/77 (49%), Positives = 47/77 (61%)
Frame = +2
Query: 158 SQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNA 337
SQ +F KA VK LK P ++ L +Y+ YKQAT G N +PG+LD KAKWDAWN
Sbjct: 2 SQAEFDKAAEDVKHLKTKPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDAWNQ 61
Query: 338 LGNLPKETARQNYVDLV 388
L KE A + YV+ V
Sbjct: 62 LKGTSKEDAMKAYVNKV 78
>ref|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
isoform 1 [Canis familiaris].
Length = 515
Score = 70.1 bits (170), Expect = 6e-12
Identities = 31/57 (54%), Positives = 40/57 (70%)
Frame = +2
Query: 212 PGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVD 382
P NE+ LK Y+ YKQATEGPC +PG D I + KWDAW++LG++ KE A YV+
Sbjct: 66 PTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVE 122
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,415,489
Number of extensions: 2036984
Number of successful extensions: 7207
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 7185
Number of HSP's successfully gapped: 20
Length of query: 543
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 435
Effective length of database: 15,274,216
Effective search space: 6644283960
Effective search space used: 6644283960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002948
(1629 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_996667.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 551 e-157
Alignment gi|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 539 e-153
Alignment gi|NP_001159482.1| enoyl-CoA delta isomerase 2, mitochondrial i... 539 e-153
Alignment gi|NP_001003894.1| testis-specific chromodomain protein Y 1 iso... 187 3e-47
Alignment gi|NP_733841.1| testis-specific chromodomain protein Y 1 isofor... 187 3e-47
Alignment gi|NP_004815.3| chromodomain Y-like protein isoform a [Homo sap... 185 1e-46
Alignment gi|NP_001137443.1| chromodomain Y-like protein isoform d [Homo ... 185 1e-46
Alignment gi|NP_001137442.1| chromodomain Y-like protein isoform d [Homo ... 185 1e-46
Alignment gi|NP_001003895.1| testis-specific chromodomain protein Y 1 iso... 184 3e-46
Alignment gi|NP_004671.1| testis-specific chromodomain protein Y 1 isofor... 184 3e-46
>ref|NP_996667.2| enoyl-CoA delta isomerase 2, mitochondrial isoform 2 [Homo sapiens].
Length = 394
Score = 551 bits (1420), Expect = e-157
Identities = 283/397 (71%), Positives = 319/397 (80%), Gaps = 2/397 (0%)
Frame = +2
Query: 35 AMARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDP 214
AMA + LA R + LQV P QLH++ AM ASQ+DF +MNQVKLLK+DP
Sbjct: 2 AMAYLAWRLARR----SCPSSLQVTSFPVVQLHMNRTAMRASQKDFENSMNQVKLLKKDP 57
Query: 215 GNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVXX 394
GNEVKLKLYALYKQATEGPCN PKPG+ D I KAKWDAWNALG+LPKE ARQNYVDLV
Sbjct: 58 GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSS 117
Query: 395 XXXXXXX--QVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALE 568
QV P D+K ++LVVTSEDGIT I NRP KKNA+ T+MY +IMRAL+
Sbjct: 118 LSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALK 177
Query: 569 AASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKP 748
AAS+D S ITVLTG+GDYY SGNDLTNF DIPP VEE+A+++AVLLR+FV FIDFPKP
Sbjct: 178 AASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKP 237
Query: 749 LIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAA 928
LIAVVNGPAVGISVTLLGLFD VYASDRATFHTPFSHLGQSPEGCSSY FPK+M P+KA
Sbjct: 238 LIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT 297
Query: 929 EMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEK 1108
EMLIFGKKLTA EA AQGLVT VFPD TFQKEVW RLKA+AKLPPNA+RI+K ++R +E+
Sbjct: 298 EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKRER 357
Query: 1109 EKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
EKLHAVNAEE VL RW+SDEC A+V FLS+K+KL
Sbjct: 358 EKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 394
>ref|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isoform 1 [Homo sapiens].
Length = 364
Score = 539 bits (1388), Expect = e-153
Identities = 270/360 (75%), Positives = 302/360 (83%), Gaps = 2/360 (0%)
Frame = +2
Query: 146 AMAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWD 325
AM ASQ+DF +MNQVKLLK+DPGNEVKLKLYALYKQATEGPCN PKPG+ D I KAKWD
Sbjct: 5 AMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWD 64
Query: 326 AWNALGNLPKETARQNYVDLVXXXXXXXXX--QVTPAADKKQAESDSLVVTSEDGITTIR 499
AWNALG+LPKE ARQNYVDLV QV P D+K ++LVVTSEDGIT I
Sbjct: 65 AWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIM 124
Query: 500 LNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVE 679
NRP KKNA+ T+MY +IMRAL+AAS+D S ITVLTG+GDYY SGNDLTNF DIPP VE
Sbjct: 125 FNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVE 184
Query: 680 ERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSH 859
E+A+++AVLLR+FV FIDFPKPLIAVVNGPAVGISVTLLGLFD VYASDRATFHTPFSH
Sbjct: 185 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSH 244
Query: 860 LGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARL 1039
LGQSPEGCSSY FPK+M P+KA EMLIFGKKLTA EA AQGLVT VFPD TFQKEVW RL
Sbjct: 245 LGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRL 304
Query: 1040 KAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
KA+AKLPPNA+RI+K ++R +E+EKLHAVNAEE VL RW+SDEC A+V FLS+K+KL
Sbjct: 305 KAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 364
>ref|NP_001159482.1| enoyl-CoA delta isomerase 2, mitochondrial isoform 1 [Homo sapiens].
Length = 364
Score = 539 bits (1388), Expect = e-153
Identities = 270/360 (75%), Positives = 302/360 (83%), Gaps = 2/360 (0%)
Frame = +2
Query: 146 AMAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWD 325
AM ASQ+DF +MNQVKLLK+DPGNEVKLKLYALYKQATEGPCN PKPG+ D I KAKWD
Sbjct: 5 AMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWD 64
Query: 326 AWNALGNLPKETARQNYVDLVXXXXXXXXX--QVTPAADKKQAESDSLVVTSEDGITTIR 499
AWNALG+LPKE ARQNYVDLV QV P D+K ++LVVTSEDGIT I
Sbjct: 65 AWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIM 124
Query: 500 LNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVE 679
NRP KKNA+ T+MY +IMRAL+AAS+D S ITVLTG+GDYY SGNDLTNF DIPP VE
Sbjct: 125 FNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVE 184
Query: 680 ERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSH 859
E+A+++AVLLR+FV FIDFPKPLIAVVNGPAVGISVTLLGLFD VYASDRATFHTPFSH
Sbjct: 185 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSH 244
Query: 860 LGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARL 1039
LGQSPEGCSSY FPK+M P+KA EMLIFGKKLTA EA AQGLVT VFPD TFQKEVW RL
Sbjct: 245 LGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRL 304
Query: 1040 KAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
KA+AKLPPNA+RI+K ++R +E+EKLHAVNAEE VL RW+SDEC A+V FLS+K+KL
Sbjct: 305 KAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 364
>ref|NP_001003894.1| testis-specific chromodomain protein Y 1 isoform a [Homo sapiens].
Length = 540
Score = 187 bits (474), Expect = 3e-47
Identities = 100/251 (39%), Positives = 153/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV EDG T I L+ R +KNAL T++ ++I+ AL +A+ D S++ + + +G +C G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGL 345
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F + + +++FV+ FI F KP++ VNGPA+G+ ++L L D+V
Sbjct: 346 DFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLV 405
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCSS FPKMMG + A EMLI G+KLTAREA A+GLV+ V
Sbjct: 406 WANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV 465
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV ++K A P + K L+R K +L N E VL + W S +
Sbjct: 466 FLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQG 525
Query: 1178 ITAIVAFLSKK 1210
I +++ ++ K
Sbjct: 526 IESMLKYVENK 536
>ref|NP_733841.1| testis-specific chromodomain protein Y 1 isoform a [Homo sapiens].
Length = 540
Score = 187 bits (474), Expect = 3e-47
Identities = 100/251 (39%), Positives = 153/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV EDG T I L+ R +KNAL T++ ++I+ AL +A+ D S++ + + +G +C G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGL 345
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F + + +++FV+ FI F KP++ VNGPA+G+ ++L L D+V
Sbjct: 346 DFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLV 405
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCSS FPKMMG + A EMLI G+KLTAREA A+GLV+ V
Sbjct: 406 WANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV 465
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV ++K A P + K L+R K +L N E VL + W S +
Sbjct: 466 FLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQG 525
Query: 1178 ITAIVAFLSKK 1210
I +++ ++ K
Sbjct: 526 IESMLKYVENK 536
>ref|NP_004815.3| chromodomain Y-like protein isoform a [Homo sapiens].
Length = 544
Score = 185 bits (469), Expect = 1e-46
Identities = 97/251 (38%), Positives = 154/251 (61%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ R++ AL A+ D S++ +L+ G +C G
Sbjct: 290 IVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGL 349
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 350 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 409
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+ V
Sbjct: 410 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV 469
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 470 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 529
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 530 MDSMLKYLQRK 540
>ref|NP_001137443.1| chromodomain Y-like protein isoform d [Homo sapiens].
Length = 412
Score = 185 bits (469), Expect = 1e-46
Identities = 97/251 (38%), Positives = 154/251 (61%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ R++ AL A+ D S++ +L+ G +C G
Sbjct: 158 IVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGL 217
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 218 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 277
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+ V
Sbjct: 278 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV 337
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 338 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 397
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 398 MDSMLKYLQRK 408
>ref|NP_001137442.1| chromodomain Y-like protein isoform d [Homo sapiens].
Length = 412
Score = 185 bits (469), Expect = 1e-46
Identities = 97/251 (38%), Positives = 154/251 (61%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ R++ AL A+ D S++ +L+ G +C G
Sbjct: 158 IVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGL 217
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 218 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 277
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML+ G+KLTA+EA +GLV+ V
Sbjct: 278 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV 337
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 338 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 397
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 398 MDSMLKYLQRK 408
>ref|NP_001003895.1| testis-specific chromodomain protein Y 1 isoform b [Homo sapiens].
Length = 554
Score = 184 bits (466), Expect = 3e-46
Identities = 99/245 (40%), Positives = 150/245 (61%), Gaps = 1/245 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV EDG T I L+ R +KNAL T++ ++I+ AL +A+ D S++ + + +G +C G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGL 345
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F + + +++FV+ FI F KP++ VNGPA+G+ ++L L D+V
Sbjct: 346 DFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLV 405
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCSS FPKMMG + A EMLI G+KLTAREA A+GLV+ V
Sbjct: 406 WANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV 465
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV ++K A P + K L+R K +L N E VL + W S +
Sbjct: 466 FLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQG 525
Query: 1178 ITAIV 1192
I +++
Sbjct: 526 IESML 530
>ref|NP_004671.1| testis-specific chromodomain protein Y 1 isoform b [Homo sapiens].
Length = 554
Score = 184 bits (466), Expect = 3e-46
Identities = 99/245 (40%), Positives = 150/245 (61%), Gaps = 1/245 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV EDG T I L+ R +KNAL T++ ++I+ AL +A+ D S++ + + +G +C G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGL 345
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F + + +++FV+ FI F KP++ VNGPA+G+ ++L L D+V
Sbjct: 346 DFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLV 405
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCSS FPKMMG + A EMLI G+KLTAREA A+GLV+ V
Sbjct: 406 WANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV 465
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV ++K A P + K L+R K +L N E VL + W S +
Sbjct: 466 FLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQG 525
Query: 1178 ITAIV 1192
I +++
Sbjct: 526 IESML 530
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,993,295
Number of extensions: 2001039
Number of successful extensions: 6895
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 6857
Number of HSP's successfully gapped: 39
Length of query: 543
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 436
Effective length of database: 14,770,016
Effective search space: 6439726976
Effective search space used: 6439726976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002948
(1629 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial i... 521 e-148
Alignment gi|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial i... 508 e-144
Alignment gi|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 508 e-144
Alignment gi|NP_081223.1| enoyl-Coenzyme A delta isomerase 3 [Mus musculu... 372 e-103
Alignment gi|NP_001116858.1| chromodomain Y-like protein isoform 2 [Mus m... 182 5e-46
Alignment gi|NP_034011.1| chromodomain Y-like protein isoform 1 [Mus musc... 182 5e-46
Alignment gi|NP_083717.1| chromodomain Y-like protein 2 [Mus musculus]. 170 3e-42
Alignment gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M... 89 1e-17
Alignment gi|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3... 87 3e-17
Alignment gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 84 4e-16
>ref|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial isoform a [Mus musculus].
Length = 391
Score = 521 bits (1341), Expect = e-148
Identities = 263/376 (69%), Positives = 301/376 (80%), Gaps = 2/376 (0%)
Frame = +2
Query: 98 LQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCN 277
LQV R +LH+ P M ASQ+DF A+NQVKLLK+DPGNEVKL+LYALYKQATEGPCN
Sbjct: 17 LQVFRLQVAKLHLGRPTMRASQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCN 76
Query: 278 APKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVXXXXXXXXX--QVTPAADKKQAE 451
PKPGMLDF+ KAKWDAWNALG+LPKETARQNYVDLV Q AD+K E
Sbjct: 77 MPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPSQGKRGADEKARE 136
Query: 452 SDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCS 631
S ++VTSEDGIT I NRP KKNA++ QMYRDI+ AL+ AS D++ + V TG+GDYYCS
Sbjct: 137 SKDILVTSEDGITKITFNRPTKKNAISFQMYRDIILALKNASTDNTVMAVFTGTGDYYCS 196
Query: 632 GNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFD 811
GNDLTNF +EE A + AVLLRDFV+ FIDFPKPL+AVVNGPAVGISVTLLGLFD
Sbjct: 197 GNDLTNFTSATGG-IEEAASNGAVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFD 255
Query: 812 VVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVT 991
V+ASDRATFHTPFS LGQSPE CSSY FPKMMG +KAAEML+FGKKLTAREA AQGLVT
Sbjct: 256 AVFASDRATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVT 315
Query: 992 AVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSD 1171
VFP+ TF+ EVW RLK YAKLPPNAMRI+K L+R EKEKL+AVNAEE L RW+S+
Sbjct: 316 EVFPESTFETEVWTRLKTYAKLPPNAMRISKELIRKNEKEKLYAVNAEECTTLQARWLSE 375
Query: 1172 ECITAIVAFLSKKAKL 1219
EC+ AI++F+S+K KL
Sbjct: 376 ECMNAIMSFVSRKPKL 391
>ref|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus musculus].
Length = 358
Score = 508 bits (1307), Expect = e-144
Identities = 256/359 (71%), Positives = 292/359 (81%), Gaps = 2/359 (0%)
Frame = +2
Query: 149 MAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 328
M ASQ+DF A+NQVKLLK+DPGNEVKL+LYALYKQATEGPCN PKPGMLDF+ KAKWDA
Sbjct: 1 MRASQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 60
Query: 329 WNALGNLPKETARQNYVDLVXXXXXXXXX--QVTPAADKKQAESDSLVVTSEDGITTIRL 502
WNALG+LPKETARQNYVDLV Q AD+K ES ++VTSEDGIT I
Sbjct: 61 WNALGSLPKETARQNYVDLVSSLSSSSEAPSQGKRGADEKARESKDILVTSEDGITKITF 120
Query: 503 NRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEE 682
NRP KKNA++ QMYRDI+ AL+ AS D++ + V TG+GDYYCSGNDLTNF +EE
Sbjct: 121 NRPTKKNAISFQMYRDIILALKNASTDNTVMAVFTGTGDYYCSGNDLTNFTSATGG-IEE 179
Query: 683 RAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHL 862
A + AVLLRDFV+ FIDFPKPL+AVVNGPAVGISVTLLGLFD V+ASDRATFHTPFS L
Sbjct: 180 AASNGAVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFDAVFASDRATFHTPFSQL 239
Query: 863 GQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLK 1042
GQSPE CSSY FPKMMG +KAAEML+FGKKLTAREA AQGLVT VFP+ TF+ EVW RLK
Sbjct: 240 GQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRLK 299
Query: 1043 AYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
YAKLPPNAMRI+K L+R EKEKL+AVNAEE L RW+S+EC+ AI++F+S+K KL
Sbjct: 300 TYAKLPPNAMRISKELIRKNEKEKLYAVNAEECTTLQARWLSEECMNAIMSFVSRKPKL 358
>ref|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus musculus].
Length = 358
Score = 508 bits (1307), Expect = e-144
Identities = 256/359 (71%), Positives = 292/359 (81%), Gaps = 2/359 (0%)
Frame = +2
Query: 149 MAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 328
M ASQ+DF A+NQVKLLK+DPGNEVKL+LYALYKQATEGPCN PKPGMLDF+ KAKWDA
Sbjct: 1 MRASQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 60
Query: 329 WNALGNLPKETARQNYVDLVXXXXXXXXX--QVTPAADKKQAESDSLVVTSEDGITTIRL 502
WNALG+LPKETARQNYVDLV Q AD+K ES ++VTSEDGIT I
Sbjct: 61 WNALGSLPKETARQNYVDLVSSLSSSSEAPSQGKRGADEKARESKDILVTSEDGITKITF 120
Query: 503 NRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEE 682
NRP KKNA++ QMYRDI+ AL+ AS D++ + V TG+GDYYCSGNDLTNF +EE
Sbjct: 121 NRPTKKNAISFQMYRDIILALKNASTDNTVMAVFTGTGDYYCSGNDLTNFTSATGG-IEE 179
Query: 683 RAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHL 862
A + AVLLRDFV+ FIDFPKPL+AVVNGPAVGISVTLLGLFD V+ASDRATFHTPFS L
Sbjct: 180 AASNGAVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFDAVFASDRATFHTPFSQL 239
Query: 863 GQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLK 1042
GQSPE CSSY FPKMMG +KAAEML+FGKKLTAREA AQGLVT VFP+ TF+ EVW RLK
Sbjct: 240 GQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRLK 299
Query: 1043 AYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
YAKLPPNAMRI+K L+R EKEKL+AVNAEE L RW+S+EC+ AI++F+S+K KL
Sbjct: 300 TYAKLPPNAMRISKELIRKNEKEKLYAVNAEECTTLQARWLSEECMNAIMSFVSRKPKL 358
>ref|NP_081223.1| enoyl-Coenzyme A delta isomerase 3 [Mus musculus].
Length = 317
Score = 372 bits (955), Expect = e-103
Identities = 193/314 (61%), Positives = 234/314 (74%), Gaps = 2/314 (0%)
Frame = +2
Query: 281 PKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVXXXXXXXXX--QVTPAADKKQAES 454
PKPG+ +F+ KA WDA NALG+LPKETAR+NYVDLV Q AD+K ES
Sbjct: 2 PKPGVFNFVNKATWDARNALGSLPKETARKNYVDLVSSLSSSSEAPSQGKRGADEKARES 61
Query: 455 DSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSG 634
++VTSEDGIT I NRP KKNA++ QMY DIM AL+ AS D+S ITV TG+GDYY SG
Sbjct: 62 KDILVTSEDGITKITFNRPTKKNAISFQMYLDIMHALKNASTDNSVITVFTGTGDYYSSG 121
Query: 635 NDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDV 814
NDL N + ++++ +S +LR+FV+ FIDFPKPL+AVVNGPAVGI+VT+L LFD
Sbjct: 122 NDLKNLIN-DAGEIQDVVATSTKILREFVNCFIDFPKPLVAVVNGPAVGIAVTILALFDA 180
Query: 815 VYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTA 994
V+ASDRATFHTPFS L Q PE CS+Y+FPK+MGP+KAAEML+FGKKLTAREA AQGLVT
Sbjct: 181 VFASDRATFHTPFSQLSQIPEACSTYMFPKIMGPTKAAEMLLFGKKLTAREAWAQGLVTE 240
Query: 995 VFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDE 1174
VFP+ TF+ EVW RLK Y+KL PN MRI+K L+R EK+KL+ VNAEE ER +E
Sbjct: 241 VFPESTFETEVWTRLKTYSKLSPNVMRISKELIRKHEKQKLYTVNAEECAAALERMPREE 300
Query: 1175 CITAIVAFLSKKAK 1216
A+ FL +KAK
Sbjct: 301 YAKALRNFLFRKAK 314
>ref|NP_001116858.1| chromodomain Y-like protein isoform 2 [Mus musculus].
Length = 544
Score = 182 bits (463), Expect = 5e-46
Identities = 96/251 (38%), Positives = 153/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ +++ AL A+ D S++ +L+ G +C G
Sbjct: 290 IVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGL 349
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 350 DFIYFIRRLTDDRKRESTKMADAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 409
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML G+KLTA+EA +GLV+ V
Sbjct: 410 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLFSGRKLTAQEACGKGLVSQV 469
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 470 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 529
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 530 MDSMLKYLQRK 540
>ref|NP_034011.1| chromodomain Y-like protein isoform 1 [Mus musculus].
Length = 593
Score = 182 bits (463), Expect = 5e-46
Identities = 96/251 (38%), Positives = 153/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV +DG T I L+ + ++ N+L ++ +++ AL A+ D S++ +L+ G +C G
Sbjct: 339 IVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGL 398
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D F D + + A +R+FV+ FI F KP+I VNGPA+G+ ++L L DVV
Sbjct: 399 DFIYFIRRLTDDRKRESTKMADAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 458
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+A+++A F TP++ GQSP+GCS+ +FPK+MG + A EML G+KLTA+EA +GLV+ V
Sbjct: 459 WANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLFSGRKLTAQEACGKGLVSQV 518
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A P + +K L+R K +L N E VL + W S +
Sbjct: 519 FWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQG 578
Query: 1178 ITAIVAFLSKK 1210
+ +++ +L +K
Sbjct: 579 MDSMLKYLQRK 589
>ref|NP_083717.1| chromodomain Y-like protein 2 [Mus musculus].
Length = 503
Score = 170 bits (431), Expect = 3e-42
Identities = 93/251 (37%), Positives = 151/251 (60%), Gaps = 1/251 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV E+G T I L+ + + NALT ++ +++ RAL A+ D S++ +L+ G +CSG
Sbjct: 249 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGL 308
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D + + + A +RDFV FI F KP++ +NGPA+G+ ++L L D+V
Sbjct: 309 DYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIV 368
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAV 997
+AS++A F TP++ + +P GCSSY FP+++G + A EML G+KLTA+EA ++GLV+ V
Sbjct: 369 WASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQV 428
Query: 998 FPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDEC 1177
F TF +EV R+K A + +K L+R K L VN +E +L + W S +
Sbjct: 429 FWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEEVNEKECVMLKQLWSSSKG 488
Query: 1178 ITAIVAFLSKK 1210
+ ++ ++L K
Sbjct: 489 LDSLFSYLQDK 499
>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
Length = 290
Score = 88.6 bits (218), Expect = 1e-17
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 5/254 (1%)
Frame = +2
Query: 464 VVTSEDG----ITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYC 628
++T + G + I+LNRP NAL + ++ +ALE +D + VLTG +
Sbjct: 36 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKAFA 95
Query: 629 SGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLF 808
+G D+ ++ + + SS L D KP+IA VNG A+G L +
Sbjct: 96 AGADIKEMQN----RTFQDCYSSKFL--SHWDHITRVKKPVIAAVNGYALGGGCELAMMC 149
Query: 809 DVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLV 988
D++YA ++A F P LG P + + +G S A EM++ G +++A++A GLV
Sbjct: 150 DIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLV 209
Query: 989 TAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVS 1168
+ +FP + +E + A + +AK + + L N E R+ + +
Sbjct: 210 SKIFPVEKLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFAT 269
Query: 1169 DECITAIVAFLSKK 1210
D+ + AF+ K+
Sbjct: 270 DDRREGMTAFVEKR 283
>ref|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Mus musculus].
Length = 300
Score = 87.4 bits (215), Expect = 3e-17
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 9/254 (3%)
Frame = +2
Query: 476 EDGITTIRLNRPAKKNALTTQMYRDIMRAL--EAASEDSSRITVLTGSGDYYCSGNDLTN 649
+DGI I L+ P ++NAL+ M + + + EA SED ++ +++ G + SG+DL
Sbjct: 53 QDGIRNIVLSNPRRRNALSLAMLKSLRSDILHEAESEDL-KVIIISAEGPVFSSGHDLKE 111
Query: 650 FKDIPPD----KVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D +V + +L+R+ P P++A+VNG A L+ D+
Sbjct: 112 LTDAQGRDYHAEVFQTCSEVMMLIRNH-------PVPILAMVNGLATAAGCQLVASCDIA 164
Query: 818 YASDRATFHTPFSHLG---QSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLV 988
ASD+++F TP ++G +P P+ + A EML G+ ++A+EAL GL+
Sbjct: 165 VASDKSSFATPGVNVGLFCSTPAVALGRAVPRKV----ALEMLFTGEPISAQEALRHGLI 220
Query: 989 TAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVS 1168
+ V P++ + E K + L + + + K Q + L S+ + +
Sbjct: 221 SKVVPEEQLEAETMRIAKKISSLSRSVVALGKATFYKQLPQDLRTAYFLASQAMVDNLAL 280
Query: 1169 DECITAIVAFLSKK 1210
+ I AF+ K+
Sbjct: 281 QDGQEGIEAFIQKR 294
>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor
[Mus musculus].
Length = 327
Score = 83.6 bits (205), Expect = 4e-16
Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 10/194 (5%)
Frame = +2
Query: 455 DSLVVTS-EDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYC 628
+S+ VTS + + ++LNRP K+NA+ +R+++ + S+DS R V++G+G +
Sbjct: 55 ESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFT 114
Query: 629 SGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRF-------IDFPKPLIAVVNGPAVGIS 787
SG DL + + A A LRD + ++ PKP+IA ++G +G
Sbjct: 115 SGIDLMDMASELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGG 174
Query: 788 VTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIF-GKKLTAR 964
V L+ D+ Y + A F +G + + + PK++G L F +K+ A
Sbjct: 175 VDLVSACDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMAD 234
Query: 965 EALAQGLVTAVFPD 1006
EAL GLV+ VF D
Sbjct: 235 EALDSGLVSRVFQD 248
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,151,342
Number of extensions: 1664030
Number of successful extensions: 5707
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5679
Number of HSP's successfully gapped: 29
Length of query: 543
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 437
Effective length of database: 12,433,743
Effective search space: 5433545691
Effective search space used: 5433545691
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002948
(1629 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 762 0.0
Alignment gi|XP_001927544.3| PREDICTED: chromodomain Y-like protein, part... 148 7e-36
Alignment gi|XP_003355789.1| PREDICTED: chromodomain Y-like protein 2-lik... 115 5e-26
Alignment gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945... 88 1e-17
Alignment gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro... 82 1e-15
Alignment gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,... 78 1e-14
Alignment gi|NP_999284.1| acyl-CoA-binding protein [Sus scrofa]. 74 2e-13
Alignment gi|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containin... 72 1e-12
Alignment gi|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containin... 69 8e-12
Alignment gi|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containin... 69 8e-12
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 762 bits (1968), Expect = 0.0
Identities = 385/394 (97%), Positives = 385/394 (97%)
Frame = +2
Query: 38 MARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPG 217
MARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPG
Sbjct: 1 MARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPG 60
Query: 218 NEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVXXX 397
NEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLV
Sbjct: 61 NEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVSSL 120
Query: 398 XXXXXXQVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAAS 577
QVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAAS
Sbjct: 121 SASSCSQVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAAS 180
Query: 578 EDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIA 757
EDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIA
Sbjct: 181 EDSSRITVLTGSGDYYCSGNDLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIA 240
Query: 758 VVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEML 937
VVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEML
Sbjct: 241 VVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEML 300
Query: 938 IFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKL 1117
IFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKL
Sbjct: 301 IFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKL 360
Query: 1118 HAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 1219
HAVNAEESRVLAERWVSDECITAIVAFLSKKAKL
Sbjct: 361 HAVNAEESRVLAERWVSDECITAIVAFLSKKAKL 394
>ref|XP_001927544.3| PREDICTED: chromodomain Y-like protein, partial [Sus scrofa].
Length = 182
Score = 148 bits (374), Expect = 7e-36
Identities = 74/167 (44%), Positives = 111/167 (66%)
Frame = +2
Query: 710 RDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSS 889
R+FV+ FI F KP+I VNGPA+G+ ++L L DVV+A+++A F TP++ GQSP+GCS+
Sbjct: 12 RNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCST 71
Query: 890 YIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNA 1069
+FPK+MG + A EML+ G+KLTA+EA +GLV+ VF TF +EV R+K A P
Sbjct: 72 VMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVV 131
Query: 1070 MRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKK 1210
+ +K L+R K +L N E VL + W S + + +++ +L +K
Sbjct: 132 LEESKALVRCSMKPELEQANERECEVLRKIWGSAQGMDSMLKYLQRK 178
>ref|XP_003355789.1| PREDICTED: chromodomain Y-like protein 2-like, partial [Sus
scrofa].
Length = 346
Score = 115 bits (289), Expect = 5e-26
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
Frame = +2
Query: 461 LVVTSEDGITTIRLN-RPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGN 637
+VV E+G T I L+ + + NALT ++ +++ RAL A+ D S++ +L+ G +CSG
Sbjct: 87 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGL 146
Query: 638 DLTNFKDIPPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVV 817
D + + + A +RDFV FI F KP++ +NGPA+G+ ++L L D+V
Sbjct: 147 DYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIV 206
Query: 818 YASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTA 994
+AS++A F TP++ + +P GCSSY FP+++G + A + E L G+ TA
Sbjct: 207 WASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALLA-------PFASPELLPAGIYTA 258
>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
Length = 845
Score = 88.2 bits (217), Expect = 1e-17
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 8/252 (3%)
Frame = +2
Query: 479 DGITTIRLNRPAKKNALTTQMYRDIMRAL--EAASEDSSRITVLTGSGDYYCSGNDLTNF 652
DGI +I LN P ++NAL+ M + + L +A S D ++ V++ G + SG+DL
Sbjct: 599 DGIRSIVLNNPKRRNALSLAMLKSLQSDLLHDAESRDL-KVIVISAEGPVFSSGHDLKEL 657
Query: 653 K-DIPPDKVEE--RAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYA 823
+ PD E RA S ++L + P P+IA+VNG A L+ D+ A
Sbjct: 658 TAEQGPDYHAEVFRACSEVMMLIQ------NHPVPIIAMVNGLATAAGCQLVASCDIAVA 711
Query: 824 SDRATFHTPFSHLG---QSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTA 994
SD+++F TP +G +P P+ + A EML G+ ++A+EAL GL++
Sbjct: 712 SDKSSFATPGVTIGLFCSTPGVAVGRALPRKV----ALEMLFTGEPMSAQEALLHGLLSR 767
Query: 995 VFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDE 1174
V P++ ++E + A L + + K Q + L S+ + + +
Sbjct: 768 VVPEERLEEETMRIARKVASLSRPVLSLGKAAFYRQLAQDLRTAYHLASQTMVDNLGLPD 827
Query: 1175 CITAIVAFLSKK 1210
I AFL K+
Sbjct: 828 AQEGIQAFLQKR 839
>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
Length = 290
Score = 81.6 bits (200), Expect = 1e-15
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 1/240 (0%)
Frame = +2
Query: 494 IRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYCSGNDLTNFKDIPPD 670
I+LNRP NAL + ++ +AL+A ED + VLTG + +G D+ K++
Sbjct: 50 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADI---KEMQNQ 106
Query: 671 KVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTP 850
++ + D + R KP+IA VNG A+G L + D++YA ++A F P
Sbjct: 107 TFQDCYSGGFLSHWDHLSRV---RKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQP 163
Query: 851 FSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVW 1030
LG P + + +G S EM++ G +++A+EA GLV+ +FP +T +E
Sbjct: 164 EILLGTIPGTGGTQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAI 223
Query: 1031 ARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKK 1210
+ A +AK + + L E ++ + +++ + AF+ K+
Sbjct: 224 QCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKR 283
>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
scrofa].
Length = 322
Score = 78.2 bits (191), Expect = 1e-14
Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 11/208 (5%)
Frame = +2
Query: 455 DSLVVTS-EDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYC 628
+SL VT+ + + ++LNRP K+NA+ +R+++ ++D R V++G+G +
Sbjct: 50 ESLQVTAVQKHVLHVQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFT 109
Query: 629 SGNDLTNF-KDIPPDKVEERAQSSAVLLRDFVDRFIDF-------PKPLIAVVNGPAVGI 784
SG DL + DI + E+ A+ S L + + ++ + PKP+IA ++G +G
Sbjct: 110 SGIDLVDMASDIFQPQGEDVARISWHL-HNLISKYQETFSVIEKCPKPVIAAIHGGCIGG 168
Query: 785 SVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIF-GKKLTA 961
V L+ D+ Y + A F +G + + + PK++G L F +K+ A
Sbjct: 169 GVDLITACDIRYCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMA 228
Query: 962 REALAQGLVTAVFPDDTFQKEVWARLKA 1045
EAL GLV+ +FPD E L A
Sbjct: 229 DEALNSGLVSRIFPDQEVLLEAALALAA 256
>ref|NP_999284.1| acyl-CoA-binding protein [Sus scrofa].
Length = 87
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +2
Query: 158 SQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNA 337
SQ +F KA +VK LK P ++ L +Y+ YKQAT G N +PG+LD KAKWDAWN
Sbjct: 2 SQAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNG 61
Query: 338 LGNLPKETARQNYVDLV 388
L KE A + Y++ V
Sbjct: 62 LKGTSKEDAMKAYINKV 78
>ref|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containing protein 5 [Sus
scrofa].
Length = 520
Score = 71.6 bits (174), Expect = 1e-12
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +2
Query: 212 PGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVD 382
P NE+ LK Y+ YKQATEGPC +PG D I + KWDAWN+LG + KE A YV+
Sbjct: 66 PTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWNSLGEMTKEEAMIAYVE 122
>ref|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
isoform 2 [Sus scrofa].
Length = 304
Score = 68.9 bits (167), Expect = 8e-12
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Frame = +2
Query: 161 QEDFAKAMNQVKLLKED----PGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 328
Q+ F A+N ++ L ++ P E L+ Y+ YKQAT GPC P+PG D I + KWDA
Sbjct: 13 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 72
Query: 329 WNALGNLPKETARQNYV 379
WN+LG + +E A Y+
Sbjct: 73 WNSLGKMSREEAMSAYI 89
>ref|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
isoform 1 [Sus scrofa].
Length = 269
Score = 68.9 bits (167), Expect = 8e-12
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Frame = +2
Query: 161 QEDFAKAMNQVKLLKED----PGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 328
Q+ F A+N ++ L ++ P E L+ Y+ YKQAT GPC P+PG D I + KWDA
Sbjct: 13 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 72
Query: 329 WNALGNLPKETARQNYV 379
WN+LG + +E A Y+
Sbjct: 73 WNSLGKMSREEAMSAYI 89
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,648,296
Number of extensions: 1282484
Number of successful extensions: 4592
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4579
Number of HSP's successfully gapped: 20
Length of query: 543
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 439
Effective length of database: 8,754,644
Effective search space: 3843288716
Effective search space used: 3843288716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002948
(1629 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 954 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 954 bits (481), Expect = 0.0
Identities = 542/565 (95%), Gaps = 3/565 (0%)
Strand = Plus / Minus
Query: 1067 gctatgagaattgcaaaacggctcatgaggcatcaggagaaggagaagttgcatgcggtt 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507635 gctatgagaattgcaaaacggctcatgaggcatcaggagaaggagaagttgcatgcggtt 2507576
Query: 1127 aatgcggaggaaagcagagtcctggcagagaggtgggtgtccgatgagtgcatcacggcc 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507575 aatgcggaggaaagcagagtcctggcagagaggtgggtgtccgatgagtgcatcacggcc 2507516
Query: 1187 atcgtagccttcttgtccaagaaggcgaagctatgacgcctgccacagcccaggacttcc 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507515 atcgtagccttcttgtccaagaaggcgaagctatgacgcctgccacagcccaggacttcc 2507456
Query: 1247 cagcagctggttctgagtgccagctgccgaaccaaagaggcgtcatcgtgccnnnnnnnn 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507455 cagcagctggttctgagtgccagctgccgaaccaaagaggcgtcatcgtgcc-ttttttt 2507397
Query: 1307 cagcgctaactagcaggtggggtgattttatttcagcggagccctgctgaaaagggatgt 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507396 cagcgctaactagcaggtggggtgattttatttcagcggagccctgctgaaaagggatgt 2507337
Query: 1367 gaaacgggctttgagaagggaggcaggtnnnnnnnnnnnnncaggctcacgtccttggcc 1426
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2507336 gaaacgggctttgagaagggaggcaggtggggggcagggggcaggctcacgtccttggcc 2507277
Query: 1427 atgaaccgctgctgccaggcgcaccgaaacatcgtgcctggcaccctgctctgaaaagcc 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507276 atgaaccgctgctgccaggcgcaccgaaacatcgtgcctggcaccctgctctgaaaagcc 2507217
Query: 1487 gtcaccgcgtggcaggctgagaccgtgtcttcg-aaaccacgacagcactctgccgtcca 1545
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2507216 gtcaccgcgtggcaggctgagaccgtgtcttcgaaaaccacgacagcactctgccgtcca 2507157
Query: 1546 cacagagtcacagacttgatcggcccaaacaccgccagcttctgggtgaccgagt-cagg 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2507156 cacagagtcacagacttgatcggcccaaacaccgccagcttctgggtgaccgagtccagg 2507097
Query: 1605 tcctcggcgggtcgcatgttctttt 1629
|||||||||||||||||||||||||
Sbjct: 2507096 tcctcggcgggtcgcatgttctttt 2507072
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 93 gccctctgcaggtcattcgttgcccagcacctcagctgcacgtgagtgggcctgcgatgg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521527 gccctctgcaggtcattcgttgcccagcacctcagctgcacgtgagtgggcctgcgatgg 2521468
Query: 153 cagccagccaggaggactttgcaaaggcaatgaatcaagtgaaactcttgaaggaggatc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521467 cagccagccaggaggactttgcaaaggcaatgaatcaagtgaaactcttgaaggaggatc 2521408
Query: 213 caggaaatgaggtgaagctgaaactctacgcgctgtataagcagg 257
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521407 caggaaatgaggtgaagctgaaactctacgcgctgtataagcagg 2521363
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 354 aggaaactgccaggcagaactacgtggacttggtgtccagcctgagtgcttcatcctgca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2519443 aggaaactgccaggcagaactacgtggacttggtgtccagcctgagtgcttcatcctgca 2519384
Query: 414 gccaggtgacacctgccgcggacaagaaacaagcggaaagtgacagcctggtggtgacct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2519383 gccaggtgacacctgccgcggacaagaaacaagcggaaagtgacagcctggtggtgacct 2519324
Query: 474 ctgaagacggcatcacaacgatcaggttgaaccggccggcc 514
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 2519323 ctgaagacggcatcacaacgatcaggttgaaccggccggcc 2519283
Score = 291 bits (147), Expect = 6e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 921 aggccgcggagatgctcatctttgggaagaagttaaccgcacgagaagcacttgctcaag 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508286 aggccgcggagatgctcatctttgggaagaagttaaccgcacgagaagcacttgctcaag 2508227
Query: 981 gacttgttactgcggtttttcctgatgacacctttcagaaagaagtttgggccaggctga 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508226 gacttgttactgcggtttttcctgatgacacctttcagaaagaagtttgggccaggctga 2508167
Query: 1041 aggcatatgcaaagctccccccaaatg 1067
|||||||||||||||||||||||||||
Sbjct: 2508166 aggcatatgcaaagctccccccaaatg 2508140
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 710 agggactttgtggaccgtttcatagattttcctaagcctctgattgccgtggtcaacggt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515251 agggactttgtggaccgtttcatagattttcctaagcctctgattgccgtggtcaacggt 2515192
Query: 770 ccagccgtgggcatctccgtcaccctcctcgggctgttcgatgtcgtgtatgcgtccgac 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515191 ccagccgtgggcatctccgtcaccctcctcgggctgttcgatgtcgtgtatgcgtccgac 2515132
Query: 830 aggg 833
||||
Sbjct: 2515131 aggg 2515128
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 606 caggaagtggggactattactgtagcggcaatgacctgaccaacttcaaggatatccccc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515946 caggaagtggggactattactgtagcggcaatgacctgaccaacttcaaggatatccccc 2515887
Query: 666 ctgacaaagtagaggagagagcccagagcagcgccgtcttactgagg 712
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515886 ctgacaaagtagaggagagagcccagagcagcgccgtcttactgagg 2515840
Score = 174 bits (88), Expect = 1e-40
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 832 ggcaacatttcacacgcccttcagccacctcggccagagtccagaaggatgctcctctta 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509844 ggcaacatttcacacgcccttcagccacctcggccagagtccagaaggatgctcctctta 2509785
Query: 892 catttttccgaagatgatgggcccaagcaagg 923
|||||||||||||||||||||||| |||||||
Sbjct: 2509784 catttttccgaagatgatgggcccgagcaagg 2509753
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 15 ccggagtcccgcccacgccggccatggctagggtggtgggcctgctggcgcatcgttggt 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2523615 ccggagtcccgcccacgccggccatggctagggtggtgggcctgctggcgcatcgttggt 2523556
Query: 75 tctcgggcgctttccgggg 93
|||||||||||||||||||
Sbjct: 2523555 tctcgggcgctttccgggg 2523537
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 534 cccagatgtaccgagacatcatgcgtgcgctggaagcggcgagcgaggacagctcgcgca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517700 cccagatgtaccgagacatcatgcgtgcgctggaagcggcgagcgaggacagctcgcgca 2517641
Query: 594 tcaccgttctaacagg 609
||||||||||||||||
Sbjct: 2517640 tcaccgttctaacagg 2517625
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,571,234
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 11
Length of query: 1629
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1607
Effective length of database: 2,808,408,574
Effective search space: 4513112578418
Effective search space used: 4513112578418
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)