Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002957
(1321 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068961.1| succinyl-CoA ligase [ADP-forming] subunit be... 747 0.0
Alignment gi|NP_001029811.1| succinyl-CoA ligase [GDP-forming] subunit be... 373 e-105
Alignment gi|NP_001032534.1| ATP-citrate synthase [Bos taurus]. 49 8e-06
>ref|NP_001068961.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Bos
taurus].
Length = 463
Score = 747 bits (1929), Expect(2) = 0.0
Identities = 384/407 (94%), Positives = 392/407 (96%)
Frame = +1
Query: 40 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
MAAS+FYSRLLAAATLR+HRPRTAL AAQVLGSSGLFNNHG+ RNLSLHEY+S
Sbjct: 1 MAASVFYSRLLAAATLRSHRPRTALPAAAQVLGSSGLFNNHGVQIQHQQQRNLSLHEYLS 60
Query: 220 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120
Query: 400 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP
Sbjct: 121 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 180
Query: 580 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
VLIGSS GGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFP SIVDSAAENM
Sbjct: 181 VLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPASIVDSAAENM 240
Query: 760 IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
IKLY+ FLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
Sbjct: 241 IKLYDPFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 300
Query: 940 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
DKDAAKA+LNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
Sbjct: 301 DKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 360
Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK + +R
Sbjct: 361 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVR 407
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
IPIVV L+GTRVDDA ALIADSGLKI
Sbjct: 402 IPIVVRLQGTRVDDAKALIADSGLKI 427
>ref|NP_001029811.1| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
precursor [Bos taurus].
Length = 432
Score = 373 bits (958), Expect(2) = e-105
Identities = 194/357 (54%), Positives = 253/357 (70%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
F SGLKGGV + P+ ++ QMIG L TKQT ++G +V+V E RE Y A
Sbjct: 96 FSSGLKGGVHLTKDPKVVGQLAKQMIGYNLATKQTPKEGVKVKKVMVAEALDISRETYLA 155
Query: 550 ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
I M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI+EGIK QA R+A+ +GF
Sbjct: 156 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 215
Query: 730 SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
+ + AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +RQK IF
Sbjct: 216 PLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275
Query: 910 LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
+ D ++ + + +AA+ +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276 MDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335
Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
G QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI A ++LE+K L +R
Sbjct: 336 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392
Score = 28.1 bits (61), Expect(2) = e-105
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
+P+VV L+GT V +A ++++SGL I
Sbjct: 387 VPLVVRLEGTNVHEAQNILSNSGLPI 412
>ref|NP_001032534.1| ATP-citrate synthase [Bos taurus].
Length = 1091
Score = 49.3 bits (116), Expect = 8e-06
Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AK++ ++
Sbjct: 174 ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,743,769
Number of extensions: 1367252
Number of successful extensions: 3956
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3949
Number of HSP's successfully gapped: 5
Length of query: 440
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 335
Effective length of database: 14,207,134
Effective search space: 4759389890
Effective search space used: 4759389890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002957
(1321 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542566.2| PREDICTED: similar to Succinyl-CoA ligase [ADP-... 701 0.0
Alignment gi|XP_533767.1| PREDICTED: similar to Succinyl-CoA ligase [GDP-... 371 e-103
Alignment gi|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP... 49 8e-06
Alignment gi|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP... 49 8e-06
Alignment gi|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform... 49 8e-06
Alignment gi|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP... 49 8e-06
Alignment gi|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform... 49 8e-06
Alignment gi|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP... 49 8e-06
Alignment gi|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP... 49 8e-06
Alignment gi|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform... 49 8e-06
>ref|XP_542566.2| PREDICTED: similar to Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaA
chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
beta subunit) [Canis familiaris].
Length = 437
Score = 701 bits (1810), Expect(2) = 0.0
Identities = 357/378 (94%), Positives = 364/378 (96%)
Frame = +1
Query: 127 QVLGSSGLFNNHGLXXXXXXXRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKK 306
QVLGSSG FNNHGL RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYA+AKK
Sbjct: 4 QVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAVAKK 63
Query: 307 LGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG 486
LGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG
Sbjct: 64 LGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG 123
Query: 487 RICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPID 666
RICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPID
Sbjct: 124 RICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPID 183
Query: 667 IVEGIKKEQAVRLAQKMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVL 846
IVEGIKKEQAVRLAQKMGFP +IVDSAAENM+KLYNLFLKYDATMVEINPMVEDSDG VL
Sbjct: 184 IVEGIKKEQAVRLAQKMGFPSNIVDSAAENMVKLYNLFLKYDATMVEINPMVEDSDGTVL 243
Query: 847 CMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAM 1026
CMDAKINFDSNSAYRQKKIFDLQDWTQEDER+K AAKANLNYIGLDGNIGCLVNGAGLAM
Sbjct: 244 CMDAKINFDSNSAYRQKKIFDLQDWTQEDEREKGAAKANLNYIGLDGNIGCLVNGAGLAM 303
Query: 1027 ATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQ 1206
ATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVL+ILVNIFGGIMRCDVIAQ
Sbjct: 304 ATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQ 363
Query: 1207 GIVMAVKDLEIKYLLWLR 1260
GIVMAVKDLEIK + +R
Sbjct: 364 GIVMAVKDLEIKIPIVVR 381
Score = 43.1 bits (100), Expect(2) = 0.0
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
IPIVV L+GTRVDDA ALI DSGLKI
Sbjct: 376 IPIVVRLQGTRVDDAKALITDSGLKI 401
>ref|XP_533767.1| PREDICTED: similar to Succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaG
chain) (SCS-betaG) (GTP-specific succinyl-CoA synthetase
beta subunit) [Canis familiaris].
Length = 432
Score = 371 bits (952), Expect(2) = e-103
Identities = 195/357 (54%), Positives = 251/357 (70%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ + GV + + VA + +EA AKKL +K+ V+KAQ+LAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKKLNAKEFVLKAQILAGGRGKGV 95
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
F SGLKGGV + P+ ++ QMIG L TKQT ++G N+V+V E RE Y A
Sbjct: 96 FSSGLKGGVHLTKDPQVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155
Query: 550 ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
I M++S GPVL+GS QGGV+IE+VAA PE I KE IDI+EGIK QA R+A+ +GF
Sbjct: 156 ILMDQSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIMEGIKDSQAQRMAENLGFLG 215
Query: 730 SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
+ + AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +RQK IF
Sbjct: 216 PLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275
Query: 910 LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
+ D ++ + + +AAK +L YIGLDGNI C VNGAGLAMAT DII L GG PANFLD+GG
Sbjct: 276 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIILLKGGKPANFLDLGG 335
Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
G QV +AFKL+T+D KV +ILVNIF GI+ C +IA GI A ++LE+K L +R
Sbjct: 336 GVKEAQVYQAFKLLTADPKVEAILVNIFAGIVNCAIIANGITKACQELELKVPLVVR 392
Score = 25.0 bits (53), Expect(2) = e-103
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
+P+VV L+GT V +A ++++S L I
Sbjct: 387 VPLVVRLEGTNVHEARNILSNSRLPI 412
>ref|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 17
[Canis familiaris].
Length = 1101
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 16
[Canis familiaris].
Length = 1101
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 15 [Canis
familiaris].
Length = 1091
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 14
[Canis familiaris].
Length = 1101
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 13 [Canis
familiaris].
Length = 1094
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 12
[Canis familiaris].
Length = 1111
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 11
[Canis familiaris].
Length = 1097
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 10 [Canis
familiaris].
Length = 1087
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AKI+ ++
Sbjct: 174 ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,010,812
Number of extensions: 1419967
Number of successful extensions: 4272
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4241
Number of HSP's successfully gapped: 20
Length of query: 440
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 334
Effective length of database: 15,340,888
Effective search space: 5123856592
Effective search space used: 5123856592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002957
(1321 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003841.1| succinyl-CoA ligase [ADP-forming] subunit beta,... 739 0.0
Alignment gi|NP_003839.2| succinyl-CoA ligase [GDP-forming] subunit beta,... 375 e-105
Alignment gi|NP_001171070.1| succinyl-CoA ligase [GDP-forming] subunit be... 375 e-104
Alignment gi|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens]. 49 8e-06
Alignment gi|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens]. 49 8e-06
>ref|NP_003841.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
precursor [Homo sapiens].
Length = 463
Score = 739 bits (1908), Expect(2) = 0.0
Identities = 373/401 (93%), Positives = 388/401 (96%)
Frame = +1
Query: 40 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
MAASMFY RL+A ATLRNHRPRTA + AAQVLGSSGLFNNHGL RNLSLHEYMS
Sbjct: 1 MAASMFYGRLVAVATLRNHRPRTAQRAAAQVLGSSGLFNNHGLQVQQQQQRNLSLHEYMS 60
Query: 220 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
MELLQEAGVS+PKG+VAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61 MELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120
Query: 400 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCER+YPRREYYFAITMERSFQGP
Sbjct: 121 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGP 180
Query: 580 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
VLIGSS GGVNIEDVAAE+PEAI+KEPIDI EGIKKEQA++LAQKMGFPP+IV+SAAENM
Sbjct: 181 VLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESAAENM 240
Query: 760 IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
+KLY+LFLKYDATM+EINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
Sbjct: 241 VKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 300
Query: 940 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
Sbjct: 301 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 360
Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 1242
FKLITSDKKVL+ILVNIFGGIMRCDVIAQGIVMAVKDLEIK
Sbjct: 361 FKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIK 401
Score = 44.3 bits (103), Expect(2) = 0.0
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
IP+VV L+GTRVDDA ALIADSGLKI
Sbjct: 402 IPVVVRLQGTRVDDAKALIADSGLKI 427
>ref|NP_003839.2| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform
2 precursor [Homo sapiens].
Length = 432
Score = 375 bits (962), Expect(2) = e-105
Identities = 196/357 (54%), Positives = 251/357 (70%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
F SGLKGGV + P ++ QMIG L TKQT ++G N+V+V E RE Y A
Sbjct: 96 FNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155
Query: 550 ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
I M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI EGIK QA R+A+ +GF
Sbjct: 156 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVG 215
Query: 730 SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
+ AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +RQK IF
Sbjct: 216 PLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275
Query: 910 LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
+ D ++ + + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335
Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
G QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI A ++LE+K L +R
Sbjct: 336 GVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392
Score = 27.7 bits (60), Expect(2) = e-105
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
+P+VV L+GT V +A ++ +SGL I
Sbjct: 387 VPLVVRLEGTNVQEAQKILNNSGLPI 412
>ref|NP_001171070.1| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform
1 precursor [Homo sapiens].
Length = 440
Score = 375 bits (962), Expect = e-104
Identities = 196/357 (54%), Positives = 251/357 (70%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
F SGLKGGV + P ++ QMIG L TKQT ++G N+V+V E RE Y A
Sbjct: 96 FNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155
Query: 550 ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
I M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI EGIK QA R+A+ +GF
Sbjct: 156 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVG 215
Query: 730 SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
+ AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +RQK IF
Sbjct: 216 PLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275
Query: 910 LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
+ D ++ + + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335
Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
G QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI A ++LE+K L +R
Sbjct: 336 GVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392
>ref|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens].
Length = 1091
Score = 49.3 bits (116), Expect = 8e-06
Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AK++ ++
Sbjct: 174 ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
>ref|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens].
Length = 1101
Score = 49.3 bits (116), Expect = 8e-06
Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IKK V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
P + A + L+N + T +EINP+V DG VL + AK++ ++
Sbjct: 174 ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229
Query: 889 RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
+ K F + + +E D K A L + G I +V G G ++
Sbjct: 230 KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289
Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 290 DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349
Query: 1198 IA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 350 VAATFKGIVRAIRDYQ 365
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,050,021
Number of extensions: 1390422
Number of successful extensions: 4141
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4125
Number of HSP's successfully gapped: 7
Length of query: 440
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 334
Effective length of database: 14,802,980
Effective search space: 4944195320
Effective search space used: 4944195320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002957
(1321 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035636.1| succinyl-CoA ligase [ADP-forming] subunit beta,... 704 0.0
Alignment gi|NP_035637.2| succinyl-CoA ligase [GDP-forming] subunit beta,... 377 e-106
Alignment gi|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus]. 49 9e-06
Alignment gi|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus]. 49 9e-06
>ref|NP_035636.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
precursor [Mus musculus].
Length = 463
Score = 704 bits (1817), Expect(2) = 0.0
Identities = 359/401 (89%), Positives = 376/401 (93%)
Frame = +1
Query: 40 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
MAASMFY R LAAA LR+HRP+T L+ AAQVLG+SGLFN HGL R LSLHEY+S
Sbjct: 1 MAASMFYGRQLAAAALRSHRPQTTLRAAAQVLGNSGLFNKHGLQVQQQQQRTLSLHEYLS 60
Query: 220 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
MELLQEAGVS+PKG VAKS DEAYAIAKKLGSKDVVIKAQVLAGGRGKGTF SGLKGGVK
Sbjct: 61 MELLQEAGVSVPKGFVAKSSDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFTSGLKGGVK 120
Query: 400 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
IVFSPEEAKAVSSQMIG+KL TKQTGEKGRICNQVLVCER+YPRREYYFAITMERSFQGP
Sbjct: 121 IVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGP 180
Query: 580 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
VLIGS+QGGVNIEDVAAE PEAIVKEPIDIVEGIKKEQAV LAQKMGFP +IVDSAAENM
Sbjct: 181 VLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGFPSNIVDSAAENM 240
Query: 760 IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
IKLYNLFLKYDATMVEINPMVEDSDG VLCMDAKINFDSNSAYRQKKIFDLQDW+QEDER
Sbjct: 241 IKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAYRQKKIFDLQDWSQEDER 300
Query: 940 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
DK+AA A++NYIGLDG+IGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATV QVTEA
Sbjct: 301 DKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQVTEA 360
Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 1242
FKLITSDKKV +ILVNIFGGIMRCDVIAQGIVMAVKDLEI+
Sbjct: 361 FKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIR 401
Score = 44.3 bits (103), Expect(2) = 0.0
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
IP+VV L+GTRVDDA ALIADSGLKI
Sbjct: 402 IPVVVRLQGTRVDDAKALIADSGLKI 427
>ref|NP_035637.2| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
precursor [Mus musculus].
Length = 433
Score = 377 bits (968), Expect(2) = e-106
Identities = 197/357 (55%), Positives = 254/357 (71%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ E GV + + VA + EA AK+L +K++V+KAQ+LAGGRGKG
Sbjct: 37 RWLNLQEYQSKKLMSEHGVRVQRFFVANTAKEALEAAKRLNAKEIVLKAQILAGGRGKGV 96
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
F SGLKGGV + P+ ++ QMIG L TKQT ++G N+V+V E RE Y A
Sbjct: 97 FNSGLKGGVHLTKDPKVVGELAQQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 156
Query: 550 ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
I M+RS GPV++GS QGGV+IE+VAA +PE I KE IDI EGIK QA R+A+ +GF
Sbjct: 157 ILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLG 216
Query: 730 SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
S+ + AA+ + KLY+LFLK DAT VE+NP E +G V+C DAKINFD N+ +RQK IF
Sbjct: 217 SLKNQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 276
Query: 910 LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
+ D ++ + + +AA+ +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 277 MDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 336
Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
G QV EAFKL+TSD KV +ILVNIFGGI+ C +IA GI A ++LE+K L +R
Sbjct: 337 GVKEAQVYEAFKLLTSDPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 393
Score = 27.3 bits (59), Expect(2) = e-106
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
+P+VV L+GT V +A ++ SGL I
Sbjct: 388 VPLVVRLEGTNVQEAQNILKSSGLPI 413
>ref|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus].
Length = 1101
Score = 48.9 bits (115), Expect = 9e-06
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 23/257 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IK+ V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTEDIKRHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYR 891
P + A + L+N + T +EINP+V DG V +D D+ + Y
Sbjct: 174 ----PEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYILDLAAKVDATADYI 228
Query: 892 QK---------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMAT 1032
K F + + +E D K A L + G I +V G G ++
Sbjct: 229 CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVY 288
Query: 1033 MDIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCD 1194
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 289 SDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFT 348
Query: 1195 VIA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 349 NVAATFKGIVRAIRDYQ 365
>ref|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus].
Length = 1091
Score = 48.9 bits (115), Expect = 9e-06
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 23/257 (8%)
Frame = +1
Query: 535 EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
E+Y I R +G ++ +GGV++ DV A+ + +V + E IK+ V
Sbjct: 118 EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTEDIKRHLLVHA-- 173
Query: 712 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYR 891
P + A + L+N + T +EINP+V DG V +D D+ + Y
Sbjct: 174 ----PEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYILDLAAKVDATADYI 228
Query: 892 QK---------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMAT 1032
K F + + +E D K A L + G I +V G G ++
Sbjct: 229 CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVY 288
Query: 1033 MDIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCD 1194
D I GG AN+ + G + Q + K L+T +K ++ I G I
Sbjct: 289 SDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFT 348
Query: 1195 VIA---QGIVMAVKDLE 1236
+A +GIV A++D +
Sbjct: 349 NVAATFKGIVRAIRDYQ 365
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,468,816
Number of extensions: 1182950
Number of successful extensions: 3313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3295
Number of HSP's successfully gapped: 6
Length of query: 440
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 336
Effective length of database: 12,493,815
Effective search space: 4197921840
Effective search space used: 4197921840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002957
(1321 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131022.1| PREDICTED: succinyl-CoA ligase [ADP-forming]... 769 0.0
Alignment gi|XP_003357891.1| PREDICTED: succinyl-CoA ligase [ADP-forming]... 504 e-143
Alignment gi|XP_003132357.2| PREDICTED: succinyl-CoA ligase [GDP-forming]... 378 e-106
Alignment gi|XP_003358541.1| PREDICTED: succinyl-CoA ligase [GDP-forming]... 208 8e-56
>ref|XP_003131022.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta,
mitochondrial [Sus scrofa].
Length = 463
Score = 769 bits (1985), Expect(2) = 0.0
Identities = 395/407 (97%), Positives = 397/407 (97%)
Frame = +1
Query: 40 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGL RNLSLHEYMS
Sbjct: 1 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLQIQQQQQRNLSLHEYMS 60
Query: 220 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120
Query: 400 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP
Sbjct: 121 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 180
Query: 580 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM
Sbjct: 181 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 240
Query: 760 IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
Sbjct: 241 IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 300
Query: 940 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
Sbjct: 301 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 360
Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK + +R
Sbjct: 361 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVR 407
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
IPIVV L+GTRVDDA ALIADSGLKI
Sbjct: 402 IPIVVRLQGTRVDDAKALIADSGLKI 427
>ref|XP_003357891.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta,
mitochondrial-like, partial [Sus scrofa].
Length = 267
Score = 504 bits (1297), Expect = e-143
Identities = 260/267 (97%), Positives = 260/267 (97%)
Frame = +1
Query: 40 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGL RNLSLHEYMS
Sbjct: 1 MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLQIQQQQQRNLSLHEYMS 60
Query: 220 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120
Query: 400 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP
Sbjct: 121 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 180
Query: 580 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM
Sbjct: 181 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 240
Query: 760 IKLYNLFLKYDATMVEINPMVEDSDGA 840
IKLYNLFLKYDATMVEINPMVEDSDGA
Sbjct: 241 IKLYNLFLKYDATMVEINPMVEDSDGA 267
>ref|XP_003132357.2| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
mitochondrial isoform 1 [Sus scrofa].
Length = 432
Score = 378 bits (971), Expect(2) = e-106
Identities = 197/357 (55%), Positives = 254/357 (71%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
F SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E RE Y A
Sbjct: 96 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155
Query: 550 ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
I M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI+EGIK QA R+A+ +GF
Sbjct: 156 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 215
Query: 730 SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
+ + AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +RQK IF
Sbjct: 216 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275
Query: 910 LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
+ D ++ + + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335
Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
G QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI A ++LE+K L +R
Sbjct: 336 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392
Score = 27.7 bits (60), Expect(2) = e-106
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
+P+VV L+GT V +A ++ +SGL I
Sbjct: 387 VPLVVRLEGTNVHEAQNILTNSGLPI 412
>ref|XP_003358541.1| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
mitochondrial isoform 2 [Sus scrofa].
Length = 351
Score = 208 bits (530), Expect(2) = 8e-56
Identities = 110/206 (53%), Positives = 143/206 (69%), Gaps = 1/206 (0%)
Frame = +1
Query: 646 IVKEPIDIVEGIKKEQAVRLAQKMGFPPSI-VDSAAENMIKLYNLFLKYDATMVEINPMV 822
+ K+P + + K+ LA K + V+ AA+ + KLYNLFLK DAT VE+NP
Sbjct: 106 LTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKAADQIKKLYNLFLKIDATQVEVNPFG 165
Query: 823 EDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCL 1002
E +G V+C DAKINFD N+ +RQK IF + D ++ + + +AAK +L YIGLDGNI C
Sbjct: 166 ETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACF 225
Query: 1003 VNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGI 1182
VNGAGLAMAT DII L+GG PANFLD+GGG QV +AFKL+T+D KV +ILVNIFGGI
Sbjct: 226 VNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGI 285
Query: 1183 MRCDVIAQGIVMAVKDLEIKYLLWLR 1260
+ C +IA GI A ++LE+K L +R
Sbjct: 286 VNCAIIANGITKACRELELKVPLVVR 311
Score = 27.7 bits (60), Expect(2) = 8e-56
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
+P+VV L+GT V +A ++ +SGL I
Sbjct: 306 VPLVVRLEGTNVHEAQNILTNSGLPI 331
Score = 97.4 bits (241), Expect = 2e-20
Identities = 49/99 (49%), Positives = 68/99 (68%)
Frame = +1
Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95
Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG 486
F SGLKGGV + PE ++ QMIG L TKQT ++G
Sbjct: 96 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEG 134
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,999,260
Number of extensions: 876963
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 8
Length of query: 440
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,804,438
Effective search space: 2975900044
Effective search space used: 2975900044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002957
(1321 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 359 3e-96
>Sscrofa_Chr11
|| Length = 87690581
Score = 359 bits (181), Expect = 3e-96
Identities = 184/185 (99%)
Strand = Plus / Plus
Query: 128 aggttctgggaagttctggattgtttaacaaccatggactccaaatacagcagcaacagc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20075964 aggttctgggaagttctggattgtttaacaaccatggactccaaatacagcagcaacagc 20076023
Query: 188 aaaggaatctctcactacatgaatacatgagtatggaattattgcaagaagctggcgtct 247
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 20076024 aaaggaatctctcactacatgaatatatgagtatggaattattgcaagaagctggcgtct 20076083
Query: 248 ccattcccaaaggacatgtggctaagtcaccagatgaggcttatgcaattgccaaaaaat 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20076084 ccattcccaaaggacatgtggctaagtcaccagatgaggcttatgcaattgccaaaaaat 20076143
Query: 308 taggt 312
|||||
Sbjct: 20076144 taggt 20076148
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 411 tccagaagaagcaaaagctgtttcctcacaaatgattggaaaaaagttgtttaccaagca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082521 tccagaagaagcaaaagctgtttcctcacaaatgattggaaaaaagttgtttaccaagca 20082580
Query: 471 aacaggagaaaagggcagaatatgcaatcaagtactggtttgtgagcgaagatatcccag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082581 aacaggagaaaagggcagaatatgcaatcaagtactggtttgtgagcgaagatatcccag 20082640
Query: 531 gagggaatactattttgcaataacaatggaaaggtcatttcaag 574
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082641 gagggaatactattttgcaataacaatggaaaggtcatttcaag 20082684
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 841 gtgctgtgtatggatgcgaagatcaattttgattctaattcagcttatcgccagaagaaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106817 gtgctgtgtatggatgcgaagatcaattttgattctaattcagcttatcgccagaagaaa 20106876
Query: 901 atctttgacctgcaggactggacccaggaagatgagagggacaaagatgcagcgaaggca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106877 atctttgacctgcaggactggacccaggaagatgagagggacaaagatgcagcgaaggca 20106936
Query: 961 aatctcaactacattggcctagatggaaatataggctgtctag 1003
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106937 aatctcaactacattggcctagatggaaatataggctgtctag 20106979
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1001 tagtaaatggtgctggtttggctatggccacaatggatataataaaacttcatggaggaa 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20107072 tagtaaatggtgctggtttggctatggccacaatggatataataaaacttcatggaggaa 20107131
Query: 1061 ctcctgccaactttcttgatgttggtggtggtgccacagtccatcaagtaacagaagcat 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20107132 ctcctgccaactttcttgatgttggtggtggtgccacagtccatcaagtaacagaagcat 20107191
Query: 1121 ttaagcttatcacttcagataaaaaggta 1149
|||||||||||||||||||||||||||||
Sbjct: 20107192 ttaagcttatcacttcagataaaaaggta 20107220
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 702 gcttgcacagaagatgggatttccacccagtattgtggattctgcagcagaaaacatgat 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20097706 gcttgcacagaagatgggatttccacccagtattgtggattctgcagcagaaaacatgat 20097765
Query: 762 caagctttacaacctttttctgaaatatgatgcaaccatggtagaaataaatccaatggt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20097766 caagctttacaacctttttctgaaatatgatgcaaccatggtagaaataaatccaatggt 20097825
Query: 822 agaggattcagatggagctg 841
||||||||||||||||||||
Sbjct: 20097826 agaggattcagatggagctg 20097845
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 2 ctgcgcccagcgcccgggggcctgggtcagactcagaaatggcggcctccatgttctaca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20069120 ctgcgcccagcgcccgggggcctgggtcagactcagaaatggcggcctccatgttctaca 20069179
Query: 62 gccggctgttggctgccgccacccttaggaatcaccgaccccggacggcactgcagaccg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20069180 gccggctgttggctgccgccacccttaggaatcaccgaccccggacggcactgcagaccg 20069239
Query: 122 ccgcccaggt 131
|||| |||||
Sbjct: 20069240 ccgctcaggt 20069249
Score = 248 bits (125), Expect = 7e-63
Identities = 128/129 (99%)
Strand = Plus / Plus
Query: 574 ggccctgtattaatcggaagttctcaaggtggtgtcaacattgaagatgttgctgctgag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20094751 ggccctgtattaatcggaagttctcaaggtggtgtcaacattgaagatgttgctgctgag 20094810
Query: 634 acgcctgaggccatagttaaagaacctattgacattgtagaaggcatcaaaaaagaacaa 693
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 20094811 acgcctgaggccatagttaaagaacctattgacattgtagaaggcatcaaaaaggaacaa 20094870
Query: 694 gctgtccgg 702
|||||||||
Sbjct: 20094871 gctgtccgg 20094879
Score = 206 bits (104), Expect = 2e-50
Identities = 111/112 (99%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 1145 aggtactgtctattctggtcaatatttttggaggaatcatgaggtgtgatgttattgcac 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20117244 aggtactgtctattctggtcaatatttttggaggaatcatgaggtgtgatgttattgcac 20117303
Query: 1205 agggtatagtcatggcagtaaaggatttggaaatt-aaatacctattgtggt 1255
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 20117304 agggtatagtcatggcagtaaaggatttggaaattaaaatacctattgtggt 20117355
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 308 taggttcaaaagatgttgtgataaaggcacaagttttagctggtggtagaggaaagggaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082235 taggttcaaaagatgttgtgataaaggcacaagttttagctggtggtagaggaaagggaa 20082294
Query: 368 catttgaaagtggcctcaaaggaggagtgaagatagttttctc 410
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082295 catttgaaagtggcctcaaaggaggagtgaagatagttttctc 20082337
Score = 89.7 bits (45), Expect = 4e-15
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 1265 aggtacacgagttgatgatgcctaagcactgatagcagacagtggacttaaaattct 1321
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 20118205 aggtacacgagttgatgatgctaaggcactgatagcagacagtggacttaaaattct 20118261
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,956,708
Number of extensions: 276
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 10
Length of query: 1321
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1300
Effective length of database: 2,808,413,156
Effective search space: 3650937102800
Effective search space used: 3650937102800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)