Animal-Genome cDNA 20110601C-002957


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002957
         (1321 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068961.1| succinyl-CoA ligase [ADP-forming] subunit be...   747   0.0  
Alignment   gi|NP_001029811.1| succinyl-CoA ligase [GDP-forming] subunit be...   373   e-105
Alignment   gi|NP_001032534.1| ATP-citrate synthase [Bos taurus].                 49   8e-06

>ref|NP_001068961.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Bos
            taurus].
          Length = 463

 Score =  747 bits (1929), Expect(2) = 0.0
 Identities = 384/407 (94%), Positives = 392/407 (96%)
 Frame = +1

Query: 40   MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
            MAAS+FYSRLLAAATLR+HRPRTAL  AAQVLGSSGLFNNHG+       RNLSLHEY+S
Sbjct: 1    MAASVFYSRLLAAATLRSHRPRTALPAAAQVLGSSGLFNNHGVQIQHQQQRNLSLHEYLS 60

Query: 220  MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
            MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61   MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120

Query: 400  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
            IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP
Sbjct: 121  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 180

Query: 580  VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
            VLIGSS GGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFP SIVDSAAENM
Sbjct: 181  VLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPASIVDSAAENM 240

Query: 760  IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
            IKLY+ FLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
Sbjct: 241  IKLYDPFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 300

Query: 940  DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
            DKDAAKA+LNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
Sbjct: 301  DKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 360

Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK  + +R
Sbjct: 361  FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVR 407



 Score = 44.7 bits (104), Expect(2) = 0.0
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            IPIVV L+GTRVDDA ALIADSGLKI
Sbjct: 402  IPIVVRLQGTRVDDAKALIADSGLKI 427


>ref|NP_001029811.1| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
            precursor [Bos taurus].
          Length = 432

 Score =  373 bits (958), Expect(2) = e-105
 Identities = 194/357 (54%), Positives = 253/357 (70%)
 Frame = +1

Query: 190  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
            R L+L EY S +L+ + GV + +  VA + +EA   AK+L +K++V+KAQ+LAGGRGKG 
Sbjct: 36   RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95

Query: 370  FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
            F SGLKGGV +   P+    ++ QMIG  L TKQT ++G    +V+V E     RE Y A
Sbjct: 96   FSSGLKGGVHLTKDPKVVGQLAKQMIGYNLATKQTPKEGVKVKKVMVAEALDISRETYLA 155

Query: 550  ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
            I M+RS  GPVL+GS QGGV+IE+VAA  PE I KE IDI+EGIK  QA R+A+ +GF  
Sbjct: 156  ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 215

Query: 730  SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
             + + AA+ + KLYNLFLK DAT VE+NP  E  +G V+C DAKINFD N+ +RQK IF 
Sbjct: 216  PLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275

Query: 910  LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
            + D ++ +  + +AA+ +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276  MDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335

Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            G    QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI  A ++LE+K  L +R
Sbjct: 336  GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392



 Score = 28.1 bits (61), Expect(2) = e-105
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            +P+VV L+GT V +A  ++++SGL I
Sbjct: 387  VPLVVRLEGTNVHEAQNILSNSGLPI 412


>ref|NP_001032534.1| ATP-citrate synthase [Bos taurus].
          Length = 1091

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AK++  ++   
Sbjct: 174  ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,743,769
Number of extensions: 1367252
Number of successful extensions: 3956
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3949
Number of HSP's successfully gapped: 5
Length of query: 440
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 335
Effective length of database: 14,207,134
Effective search space: 4759389890
Effective search space used: 4759389890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002957
         (1321 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_542566.2| PREDICTED: similar to Succinyl-CoA ligase [ADP-...   701   0.0  
Alignment   gi|XP_533767.1| PREDICTED: similar to Succinyl-CoA ligase [GDP-...   371   e-103
Alignment   gi|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP...    49   8e-06
Alignment   gi|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP...    49   8e-06
Alignment   gi|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform...    49   8e-06
Alignment   gi|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP...    49   8e-06
Alignment   gi|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform...    49   8e-06
Alignment   gi|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP...    49   8e-06
Alignment   gi|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP...    49   8e-06
Alignment   gi|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform...    49   8e-06

>ref|XP_542566.2| PREDICTED: similar to Succinyl-CoA ligase [ADP-forming] beta-chain,
            mitochondrial precursor (Succinyl-CoA synthetase, betaA
            chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
            beta subunit) [Canis familiaris].
          Length = 437

 Score =  701 bits (1810), Expect(2) = 0.0
 Identities = 357/378 (94%), Positives = 364/378 (96%)
 Frame = +1

Query: 127  QVLGSSGLFNNHGLXXXXXXXRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKK 306
            QVLGSSG FNNHGL       RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYA+AKK
Sbjct: 4    QVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAVAKK 63

Query: 307  LGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG 486
            LGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG
Sbjct: 64   LGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG 123

Query: 487  RICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPID 666
            RICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPID
Sbjct: 124  RICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPID 183

Query: 667  IVEGIKKEQAVRLAQKMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVL 846
            IVEGIKKEQAVRLAQKMGFP +IVDSAAENM+KLYNLFLKYDATMVEINPMVEDSDG VL
Sbjct: 184  IVEGIKKEQAVRLAQKMGFPSNIVDSAAENMVKLYNLFLKYDATMVEINPMVEDSDGTVL 243

Query: 847  CMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAM 1026
            CMDAKINFDSNSAYRQKKIFDLQDWTQEDER+K AAKANLNYIGLDGNIGCLVNGAGLAM
Sbjct: 244  CMDAKINFDSNSAYRQKKIFDLQDWTQEDEREKGAAKANLNYIGLDGNIGCLVNGAGLAM 303

Query: 1027 ATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQ 1206
            ATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVL+ILVNIFGGIMRCDVIAQ
Sbjct: 304  ATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQ 363

Query: 1207 GIVMAVKDLEIKYLLWLR 1260
            GIVMAVKDLEIK  + +R
Sbjct: 364  GIVMAVKDLEIKIPIVVR 381



 Score = 43.1 bits (100), Expect(2) = 0.0
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            IPIVV L+GTRVDDA ALI DSGLKI
Sbjct: 376  IPIVVRLQGTRVDDAKALITDSGLKI 401


>ref|XP_533767.1| PREDICTED: similar to Succinyl-CoA ligase [GDP-forming] beta-chain,
            mitochondrial precursor (Succinyl-CoA synthetase, betaG
            chain) (SCS-betaG) (GTP-specific succinyl-CoA synthetase
            beta subunit) [Canis familiaris].
          Length = 432

 Score =  371 bits (952), Expect(2) = e-103
 Identities = 195/357 (54%), Positives = 251/357 (70%)
 Frame = +1

Query: 190  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
            R L+L EY S +L+ + GV + +  VA + +EA   AKKL +K+ V+KAQ+LAGGRGKG 
Sbjct: 36   RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKKLNAKEFVLKAQILAGGRGKGV 95

Query: 370  FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
            F SGLKGGV +   P+    ++ QMIG  L TKQT ++G   N+V+V E     RE Y A
Sbjct: 96   FSSGLKGGVHLTKDPQVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155

Query: 550  ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
            I M++S  GPVL+GS QGGV+IE+VAA  PE I KE IDI+EGIK  QA R+A+ +GF  
Sbjct: 156  ILMDQSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIMEGIKDSQAQRMAENLGFLG 215

Query: 730  SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
             + + AA+ + KLYNLFLK DAT VE+NP  E  +G V+C DAKINFD N+ +RQK IF 
Sbjct: 216  PLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275

Query: 910  LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
            + D ++ +  + +AAK +L YIGLDGNI C VNGAGLAMAT DII L GG PANFLD+GG
Sbjct: 276  MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIILLKGGKPANFLDLGG 335

Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            G    QV +AFKL+T+D KV +ILVNIF GI+ C +IA GI  A ++LE+K  L +R
Sbjct: 336  GVKEAQVYQAFKLLTADPKVEAILVNIFAGIVNCAIIANGITKACQELELKVPLVVR 392



 Score = 25.0 bits (53), Expect(2) = e-103
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            +P+VV L+GT V +A  ++++S L I
Sbjct: 387  VPLVVRLEGTNVHEARNILSNSRLPI 412


>ref|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
            (pro-S-)-lyase) (Citrate cleavage enzyme) isoform 17
            [Canis familiaris].
          Length = 1101

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
            (pro-S-)-lyase) (Citrate cleavage enzyme) isoform 16
            [Canis familiaris].
          Length = 1101

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 15 [Canis
            familiaris].
          Length = 1091

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
            (pro-S-)-lyase) (Citrate cleavage enzyme) isoform 14
            [Canis familiaris].
          Length = 1101

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 13 [Canis
            familiaris].
          Length = 1094

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
            (pro-S-)-lyase) (Citrate cleavage enzyme) isoform 12
            [Canis familiaris].
          Length = 1111

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
            (pro-S-)-lyase) (Citrate cleavage enzyme) isoform 11
            [Canis familiaris].
          Length = 1097

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 10 [Canis
            familiaris].
          Length = 1087

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDKKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AKI+  ++   
Sbjct: 174  ----PGDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKIDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,010,812
Number of extensions: 1419967
Number of successful extensions: 4272
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4241
Number of HSP's successfully gapped: 20
Length of query: 440
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 334
Effective length of database: 15,340,888
Effective search space: 5123856592
Effective search space used: 5123856592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002957
         (1321 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003841.1| succinyl-CoA ligase [ADP-forming] subunit beta,...   739   0.0  
Alignment   gi|NP_003839.2| succinyl-CoA ligase [GDP-forming] subunit beta,...   375   e-105
Alignment   gi|NP_001171070.1| succinyl-CoA ligase [GDP-forming] subunit be...   375   e-104
Alignment   gi|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens].        49   8e-06
Alignment   gi|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens].        49   8e-06

>ref|NP_003841.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
            precursor [Homo sapiens].
          Length = 463

 Score =  739 bits (1908), Expect(2) = 0.0
 Identities = 373/401 (93%), Positives = 388/401 (96%)
 Frame = +1

Query: 40   MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
            MAASMFY RL+A ATLRNHRPRTA + AAQVLGSSGLFNNHGL       RNLSLHEYMS
Sbjct: 1    MAASMFYGRLVAVATLRNHRPRTAQRAAAQVLGSSGLFNNHGLQVQQQQQRNLSLHEYMS 60

Query: 220  MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
            MELLQEAGVS+PKG+VAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61   MELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120

Query: 400  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
            IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCER+YPRREYYFAITMERSFQGP
Sbjct: 121  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGP 180

Query: 580  VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
            VLIGSS GGVNIEDVAAE+PEAI+KEPIDI EGIKKEQA++LAQKMGFPP+IV+SAAENM
Sbjct: 181  VLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESAAENM 240

Query: 760  IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
            +KLY+LFLKYDATM+EINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
Sbjct: 241  VKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 300

Query: 940  DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
            DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
Sbjct: 301  DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 360

Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 1242
            FKLITSDKKVL+ILVNIFGGIMRCDVIAQGIVMAVKDLEIK
Sbjct: 361  FKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIK 401



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            IP+VV L+GTRVDDA ALIADSGLKI
Sbjct: 402  IPVVVRLQGTRVDDAKALIADSGLKI 427


>ref|NP_003839.2| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform
            2 precursor [Homo sapiens].
          Length = 432

 Score =  375 bits (962), Expect(2) = e-105
 Identities = 196/357 (54%), Positives = 251/357 (70%)
 Frame = +1

Query: 190  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
            R L+L EY S +L+ + GV + +  VA + +EA   AK+L +K++V+KAQ+LAGGRGKG 
Sbjct: 36   RWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95

Query: 370  FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
            F SGLKGGV +   P     ++ QMIG  L TKQT ++G   N+V+V E     RE Y A
Sbjct: 96   FNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155

Query: 550  ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
            I M+RS  GPVL+GS QGGV+IE+VAA  PE I KE IDI EGIK  QA R+A+ +GF  
Sbjct: 156  ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVG 215

Query: 730  SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
             +   AA+ + KLYNLFLK DAT VE+NP  E  +G V+C DAKINFD N+ +RQK IF 
Sbjct: 216  PLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275

Query: 910  LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
            + D ++ +  + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276  MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335

Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            G    QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI  A ++LE+K  L +R
Sbjct: 336  GVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392



 Score = 27.7 bits (60), Expect(2) = e-105
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            +P+VV L+GT V +A  ++ +SGL I
Sbjct: 387  VPLVVRLEGTNVQEAQKILNNSGLPI 412


>ref|NP_001171070.1| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform
            1 precursor [Homo sapiens].
          Length = 440

 Score =  375 bits (962), Expect = e-104
 Identities = 196/357 (54%), Positives = 251/357 (70%)
 Frame = +1

Query: 190  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
            R L+L EY S +L+ + GV + +  VA + +EA   AK+L +K++V+KAQ+LAGGRGKG 
Sbjct: 36   RWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95

Query: 370  FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
            F SGLKGGV +   P     ++ QMIG  L TKQT ++G   N+V+V E     RE Y A
Sbjct: 96   FNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155

Query: 550  ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
            I M+RS  GPVL+GS QGGV+IE+VAA  PE I KE IDI EGIK  QA R+A+ +GF  
Sbjct: 156  ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVG 215

Query: 730  SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
             +   AA+ + KLYNLFLK DAT VE+NP  E  +G V+C DAKINFD N+ +RQK IF 
Sbjct: 216  PLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275

Query: 910  LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
            + D ++ +  + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276  MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335

Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            G    QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI  A ++LE+K  L +R
Sbjct: 336  GVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392


>ref|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens].
          Length = 1091

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AK++  ++   
Sbjct: 174  ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


>ref|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens].
          Length = 1101

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IKK   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGA-VLCMDAKINFDSNSAY 888
                P    +  A  +  L+N +     T +EINP+V   DG  VL + AK++  ++   
Sbjct: 174  ----PEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYIC 229

Query: 889  RQK-------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATM 1035
            + K         F  + + +E    D   K  A   L  +   G I  +V G G ++   
Sbjct: 230  KVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYS 289

Query: 1036 DIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCDV 1197
            D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I     
Sbjct: 290  DTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTN 349

Query: 1198 IA---QGIVMAVKDLE 1236
            +A   +GIV A++D +
Sbjct: 350  VAATFKGIVRAIRDYQ 365


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,050,021
Number of extensions: 1390422
Number of successful extensions: 4141
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4125
Number of HSP's successfully gapped: 7
Length of query: 440
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 334
Effective length of database: 14,802,980
Effective search space: 4944195320
Effective search space used: 4944195320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002957
         (1321 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035636.1| succinyl-CoA ligase [ADP-forming] subunit beta,...   704   0.0  
Alignment   gi|NP_035637.2| succinyl-CoA ligase [GDP-forming] subunit beta,...   377   e-106
Alignment   gi|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus].     49   9e-06
Alignment   gi|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus].        49   9e-06

>ref|NP_035636.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
            precursor [Mus musculus].
          Length = 463

 Score =  704 bits (1817), Expect(2) = 0.0
 Identities = 359/401 (89%), Positives = 376/401 (93%)
 Frame = +1

Query: 40   MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
            MAASMFY R LAAA LR+HRP+T L+ AAQVLG+SGLFN HGL       R LSLHEY+S
Sbjct: 1    MAASMFYGRQLAAAALRSHRPQTTLRAAAQVLGNSGLFNKHGLQVQQQQQRTLSLHEYLS 60

Query: 220  MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
            MELLQEAGVS+PKG VAKS DEAYAIAKKLGSKDVVIKAQVLAGGRGKGTF SGLKGGVK
Sbjct: 61   MELLQEAGVSVPKGFVAKSSDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFTSGLKGGVK 120

Query: 400  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
            IVFSPEEAKAVSSQMIG+KL TKQTGEKGRICNQVLVCER+YPRREYYFAITMERSFQGP
Sbjct: 121  IVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGP 180

Query: 580  VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
            VLIGS+QGGVNIEDVAAE PEAIVKEPIDIVEGIKKEQAV LAQKMGFP +IVDSAAENM
Sbjct: 181  VLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGFPSNIVDSAAENM 240

Query: 760  IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
            IKLYNLFLKYDATMVEINPMVEDSDG VLCMDAKINFDSNSAYRQKKIFDLQDW+QEDER
Sbjct: 241  IKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAYRQKKIFDLQDWSQEDER 300

Query: 940  DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
            DK+AA A++NYIGLDG+IGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATV QVTEA
Sbjct: 301  DKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQVTEA 360

Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 1242
            FKLITSDKKV +ILVNIFGGIMRCDVIAQGIVMAVKDLEI+
Sbjct: 361  FKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIR 401



 Score = 44.3 bits (103), Expect(2) = 0.0
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            IP+VV L+GTRVDDA ALIADSGLKI
Sbjct: 402  IPVVVRLQGTRVDDAKALIADSGLKI 427


>ref|NP_035637.2| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
            precursor [Mus musculus].
          Length = 433

 Score =  377 bits (968), Expect(2) = e-106
 Identities = 197/357 (55%), Positives = 254/357 (71%)
 Frame = +1

Query: 190  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
            R L+L EY S +L+ E GV + +  VA +  EA   AK+L +K++V+KAQ+LAGGRGKG 
Sbjct: 37   RWLNLQEYQSKKLMSEHGVRVQRFFVANTAKEALEAAKRLNAKEIVLKAQILAGGRGKGV 96

Query: 370  FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
            F SGLKGGV +   P+    ++ QMIG  L TKQT ++G   N+V+V E     RE Y A
Sbjct: 97   FNSGLKGGVHLTKDPKVVGELAQQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 156

Query: 550  ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
            I M+RS  GPV++GS QGGV+IE+VAA +PE I KE IDI EGIK  QA R+A+ +GF  
Sbjct: 157  ILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLG 216

Query: 730  SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
            S+ + AA+ + KLY+LFLK DAT VE+NP  E  +G V+C DAKINFD N+ +RQK IF 
Sbjct: 217  SLKNQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 276

Query: 910  LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
            + D ++ +  + +AA+ +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 277  MDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 336

Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            G    QV EAFKL+TSD KV +ILVNIFGGI+ C +IA GI  A ++LE+K  L +R
Sbjct: 337  GVKEAQVYEAFKLLTSDPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 393



 Score = 27.3 bits (59), Expect(2) = e-106
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            +P+VV L+GT V +A  ++  SGL I
Sbjct: 388  VPLVVRLEGTNVQEAQNILKSSGLPI 413


>ref|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus].
          Length = 1101

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 23/257 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IK+   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTEDIKRHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYR 891
                P    +  A  +  L+N +     T +EINP+V   DG V  +D     D+ + Y 
Sbjct: 174  ----PEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYILDLAAKVDATADYI 228

Query: 892  QK---------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMAT 1032
             K           F  + + +E    D   K  A   L  +   G I  +V G G ++  
Sbjct: 229  CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVY 288

Query: 1033 MDIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCD 1194
             D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I    
Sbjct: 289  SDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFT 348

Query: 1195 VIA---QGIVMAVKDLE 1236
             +A   +GIV A++D +
Sbjct: 349  NVAATFKGIVRAIRDYQ 365


>ref|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus].
          Length = 1091

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 23/257 (8%)
 Frame = +1

Query: 535  EYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDI-VEGIKKEQAVRLAQ 711
            E+Y  I   R  +G  ++   +GGV++ DV A+  + +V     +  E IK+   V    
Sbjct: 118  EFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNTEDIKRHLLVHA-- 173

Query: 712  KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYR 891
                P    +  A  +  L+N +     T +EINP+V   DG V  +D     D+ + Y 
Sbjct: 174  ----PEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYILDLAAKVDATADYI 228

Query: 892  QK---------KIFDLQDWTQE----DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMAT 1032
             K           F  + + +E    D   K  A   L  +   G I  +V G G ++  
Sbjct: 229  CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVY 288

Query: 1033 MDIIKLHGGTP--ANFLDVGGGATVHQVTEAFK----LITSDKKVLSILVNIFGGIMRCD 1194
             D I   GG    AN+ +  G  +  Q  +  K    L+T +K     ++ I G I    
Sbjct: 289  SDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFT 348

Query: 1195 VIA---QGIVMAVKDLE 1236
             +A   +GIV A++D +
Sbjct: 349  NVAATFKGIVRAIRDYQ 365


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,468,816
Number of extensions: 1182950
Number of successful extensions: 3313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3295
Number of HSP's successfully gapped: 6
Length of query: 440
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 336
Effective length of database: 12,493,815
Effective search space: 4197921840
Effective search space used: 4197921840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002957
         (1321 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131022.1| PREDICTED: succinyl-CoA ligase [ADP-forming]...   769   0.0  
Alignment   gi|XP_003357891.1| PREDICTED: succinyl-CoA ligase [ADP-forming]...   504   e-143
Alignment   gi|XP_003132357.2| PREDICTED: succinyl-CoA ligase [GDP-forming]...   378   e-106
Alignment   gi|XP_003358541.1| PREDICTED: succinyl-CoA ligase [GDP-forming]...   208   8e-56

>ref|XP_003131022.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta,
            mitochondrial [Sus scrofa].
          Length = 463

 Score =  769 bits (1985), Expect(2) = 0.0
 Identities = 395/407 (97%), Positives = 397/407 (97%)
 Frame = +1

Query: 40   MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
            MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGL       RNLSLHEYMS
Sbjct: 1    MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLQIQQQQQRNLSLHEYMS 60

Query: 220  MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
            MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61   MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120

Query: 400  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
            IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP
Sbjct: 121  IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 180

Query: 580  VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
            VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM
Sbjct: 181  VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 240

Query: 760  IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 939
            IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
Sbjct: 241  IKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER 300

Query: 940  DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 1119
            DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
Sbjct: 301  DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA 360

Query: 1120 FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK  + +R
Sbjct: 361  FKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVR 407



 Score = 44.7 bits (104), Expect(2) = 0.0
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            IPIVV L+GTRVDDA ALIADSGLKI
Sbjct: 402  IPIVVRLQGTRVDDAKALIADSGLKI 427


>ref|XP_003357891.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta,
           mitochondrial-like, partial [Sus scrofa].
          Length = 267

 Score =  504 bits (1297), Expect = e-143
 Identities = 260/267 (97%), Positives = 260/267 (97%)
 Frame = +1

Query: 40  MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLXXXXXXXRNLSLHEYMS 219
           MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGL       RNLSLHEYMS
Sbjct: 1   MAASMFYSRLLAAATLRNHRPRTALQTAAQVLGSSGLFNNHGLQIQQQQQRNLSLHEYMS 60

Query: 220 MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 399
           MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
Sbjct: 61  MELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK 120

Query: 400 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 579
           IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP
Sbjct: 121 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGP 180

Query: 580 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 759
           VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM
Sbjct: 181 VLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVDSAAENM 240

Query: 760 IKLYNLFLKYDATMVEINPMVEDSDGA 840
           IKLYNLFLKYDATMVEINPMVEDSDGA
Sbjct: 241 IKLYNLFLKYDATMVEINPMVEDSDGA 267


>ref|XP_003132357.2| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
            mitochondrial isoform 1 [Sus scrofa].
          Length = 432

 Score =  378 bits (971), Expect(2) = e-106
 Identities = 197/357 (55%), Positives = 254/357 (71%)
 Frame = +1

Query: 190  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
            R L+L EY S +L+ + GV + +  VA + +EA   AK+L +K++V+KAQ+LAGGRGKG 
Sbjct: 36   RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95

Query: 370  FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFA 549
            F SGLKGGV +   PE    ++ QMIG  L TKQT ++G   N+V+V E     RE Y A
Sbjct: 96   FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155

Query: 550  ITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPP 729
            I M+RS  GPVL+GS QGGV+IE+VAA  PE I KE IDI+EGIK  QA R+A+ +GF  
Sbjct: 156  ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 215

Query: 730  SIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFD 909
             + + AA+ + KLYNLFLK DAT VE+NP  E  +G V+C DAKINFD N+ +RQK IF 
Sbjct: 216  PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 275

Query: 910  LQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG 1089
            + D ++ +  + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 276  MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 335

Query: 1090 GATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            G    QV +AFKL+T+D KV +ILVNIFGGI+ C +IA GI  A ++LE+K  L +R
Sbjct: 336  GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVR 392



 Score = 27.7 bits (60), Expect(2) = e-106
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            +P+VV L+GT V +A  ++ +SGL I
Sbjct: 387  VPLVVRLEGTNVHEAQNILTNSGLPI 412


>ref|XP_003358541.1| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
            mitochondrial isoform 2 [Sus scrofa].
          Length = 351

 Score =  208 bits (530), Expect(2) = 8e-56
 Identities = 110/206 (53%), Positives = 143/206 (69%), Gaps = 1/206 (0%)
 Frame = +1

Query: 646  IVKEPIDIVEGIKKEQAVRLAQKMGFPPSI-VDSAAENMIKLYNLFLKYDATMVEINPMV 822
            + K+P  + +  K+     LA K      + V+ AA+ + KLYNLFLK DAT VE+NP  
Sbjct: 106  LTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKAADQIKKLYNLFLKIDATQVEVNPFG 165

Query: 823  EDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCL 1002
            E  +G V+C DAKINFD N+ +RQK IF + D ++ +  + +AAK +L YIGLDGNI C 
Sbjct: 166  ETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACF 225

Query: 1003 VNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGI 1182
            VNGAGLAMAT DII L+GG PANFLD+GGG    QV +AFKL+T+D KV +ILVNIFGGI
Sbjct: 226  VNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGI 285

Query: 1183 MRCDVIAQGIVMAVKDLEIKYLLWLR 1260
            + C +IA GI  A ++LE+K  L +R
Sbjct: 286  VNCAIIANGITKACRELELKVPLVVR 311



 Score = 27.7 bits (60), Expect(2) = 8e-56
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 1242 IPIVVTLKGTRVDDA*ALIADSGLKI 1319
            +P+VV L+GT V +A  ++ +SGL I
Sbjct: 306  VPLVVRLEGTNVHEAQNILTNSGLPI 331



 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 49/99 (49%), Positives = 68/99 (68%)
 Frame = +1

Query: 190 RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGT 369
           R L+L EY S +L+ + GV + +  VA + +EA   AK+L +K++V+KAQ+LAGGRGKG 
Sbjct: 36  RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95

Query: 370 FESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKG 486
           F SGLKGGV +   PE    ++ QMIG  L TKQT ++G
Sbjct: 96  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEG 134


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,999,260
Number of extensions: 876963
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 8
Length of query: 440
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,804,438
Effective search space: 2975900044
Effective search space used: 2975900044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002957
         (1321 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr11                                                         359   3e-96

>Sscrofa_Chr11 
||          Length = 87690581

 Score =  359 bits (181), Expect = 3e-96
 Identities = 184/185 (99%)
 Strand = Plus / Plus

                                                                            
Query: 128      aggttctgggaagttctggattgtttaacaaccatggactccaaatacagcagcaacagc 187
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20075964 aggttctgggaagttctggattgtttaacaaccatggactccaaatacagcagcaacagc 20076023

                                                                            
Query: 188      aaaggaatctctcactacatgaatacatgagtatggaattattgcaagaagctggcgtct 247
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 20076024 aaaggaatctctcactacatgaatatatgagtatggaattattgcaagaagctggcgtct 20076083

                                                                            
Query: 248      ccattcccaaaggacatgtggctaagtcaccagatgaggcttatgcaattgccaaaaaat 307
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20076084 ccattcccaaaggacatgtggctaagtcaccagatgaggcttatgcaattgccaaaaaat 20076143

                     
Query: 308      taggt 312
                |||||
Sbjct: 20076144 taggt 20076148



 Score =  325 bits (164), Expect = 4e-86
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                            
Query: 411      tccagaagaagcaaaagctgtttcctcacaaatgattggaaaaaagttgtttaccaagca 470
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082521 tccagaagaagcaaaagctgtttcctcacaaatgattggaaaaaagttgtttaccaagca 20082580

                                                                            
Query: 471      aacaggagaaaagggcagaatatgcaatcaagtactggtttgtgagcgaagatatcccag 530
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082581 aacaggagaaaagggcagaatatgcaatcaagtactggtttgtgagcgaagatatcccag 20082640

                                                            
Query: 531      gagggaatactattttgcaataacaatggaaaggtcatttcaag 574
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082641 gagggaatactattttgcaataacaatggaaaggtcatttcaag 20082684



 Score =  323 bits (163), Expect = 1e-85
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                            
Query: 841      gtgctgtgtatggatgcgaagatcaattttgattctaattcagcttatcgccagaagaaa 900
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106817 gtgctgtgtatggatgcgaagatcaattttgattctaattcagcttatcgccagaagaaa 20106876

                                                                            
Query: 901      atctttgacctgcaggactggacccaggaagatgagagggacaaagatgcagcgaaggca 960
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106877 atctttgacctgcaggactggacccaggaagatgagagggacaaagatgcagcgaaggca 20106936

                                                           
Query: 961      aatctcaactacattggcctagatggaaatataggctgtctag 1003
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106937 aatctcaactacattggcctagatggaaatataggctgtctag 20106979



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1001     tagtaaatggtgctggtttggctatggccacaatggatataataaaacttcatggaggaa 1060
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20107072 tagtaaatggtgctggtttggctatggccacaatggatataataaaacttcatggaggaa 20107131

                                                                            
Query: 1061     ctcctgccaactttcttgatgttggtggtggtgccacagtccatcaagtaacagaagcat 1120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20107132 ctcctgccaactttcttgatgttggtggtggtgccacagtccatcaagtaacagaagcat 20107191

                                             
Query: 1121     ttaagcttatcacttcagataaaaaggta 1149
                |||||||||||||||||||||||||||||
Sbjct: 20107192 ttaagcttatcacttcagataaaaaggta 20107220



 Score =  278 bits (140), Expect = 7e-72
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                            
Query: 702      gcttgcacagaagatgggatttccacccagtattgtggattctgcagcagaaaacatgat 761
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20097706 gcttgcacagaagatgggatttccacccagtattgtggattctgcagcagaaaacatgat 20097765

                                                                            
Query: 762      caagctttacaacctttttctgaaatatgatgcaaccatggtagaaataaatccaatggt 821
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20097766 caagctttacaacctttttctgaaatatgatgcaaccatggtagaaataaatccaatggt 20097825

                                    
Query: 822      agaggattcagatggagctg 841
                ||||||||||||||||||||
Sbjct: 20097826 agaggattcagatggagctg 20097845



 Score =  250 bits (126), Expect = 2e-63
 Identities = 129/130 (99%)
 Strand = Plus / Plus

                                                                            
Query: 2        ctgcgcccagcgcccgggggcctgggtcagactcagaaatggcggcctccatgttctaca 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20069120 ctgcgcccagcgcccgggggcctgggtcagactcagaaatggcggcctccatgttctaca 20069179

                                                                            
Query: 62       gccggctgttggctgccgccacccttaggaatcaccgaccccggacggcactgcagaccg 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20069180 gccggctgttggctgccgccacccttaggaatcaccgaccccggacggcactgcagaccg 20069239

                          
Query: 122      ccgcccaggt 131
                |||| |||||
Sbjct: 20069240 ccgctcaggt 20069249



 Score =  248 bits (125), Expect = 7e-63
 Identities = 128/129 (99%)
 Strand = Plus / Plus

                                                                            
Query: 574      ggccctgtattaatcggaagttctcaaggtggtgtcaacattgaagatgttgctgctgag 633
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20094751 ggccctgtattaatcggaagttctcaaggtggtgtcaacattgaagatgttgctgctgag 20094810

                                                                            
Query: 634      acgcctgaggccatagttaaagaacctattgacattgtagaaggcatcaaaaaagaacaa 693
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 20094811 acgcctgaggccatagttaaagaacctattgacattgtagaaggcatcaaaaaggaacaa 20094870

                         
Query: 694      gctgtccgg 702
                |||||||||
Sbjct: 20094871 gctgtccgg 20094879



 Score =  206 bits (104), Expect = 2e-50
 Identities = 111/112 (99%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1145     aggtactgtctattctggtcaatatttttggaggaatcatgaggtgtgatgttattgcac 1204
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20117244 aggtactgtctattctggtcaatatttttggaggaatcatgaggtgtgatgttattgcac 20117303

                                                                    
Query: 1205     agggtatagtcatggcagtaaaggatttggaaatt-aaatacctattgtggt 1255
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 20117304 agggtatagtcatggcagtaaaggatttggaaattaaaatacctattgtggt 20117355



 Score =  204 bits (103), Expect = 9e-50
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                            
Query: 308      taggttcaaaagatgttgtgataaaggcacaagttttagctggtggtagaggaaagggaa 367
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082235 taggttcaaaagatgttgtgataaaggcacaagttttagctggtggtagaggaaagggaa 20082294

                                                           
Query: 368      catttgaaagtggcctcaaaggaggagtgaagatagttttctc 410
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20082295 catttgaaagtggcctcaaaggaggagtgaagatagttttctc 20082337



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                         
Query: 1265     aggtacacgagttgatgatgcctaagcactgatagcagacagtggacttaaaattct 1321
                |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct: 20118205 aggtacacgagttgatgatgctaaggcactgatagcagacagtggacttaaaattct 20118261


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,956,708
Number of extensions: 276
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 10
Length of query: 1321
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1300
Effective length of database: 2,808,413,156
Effective search space: 3650937102800
Effective search space used: 3650937102800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)