Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002960
(2248 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039480.1| mitochondrial inner membrane protein [Bos ta... 1073 0.0
>ref|NP_001039480.1| mitochondrial inner membrane protein [Bos taurus].
Length = 749
Score = 1073 bits (2774), Expect = 0.0
Identities = 574/706 (81%), Positives = 585/706 (82%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVTSTAQ+CLCGKFVLRPLRPCRRYSTSGSSRLS K
Sbjct: 1 MLRACQLSGVTSTAQNCLCGKFVLRPLRPCRRYSTSGSSRLSASKIAGAGILFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR NVEKTIPYSDKLFEMVLGSPPYTVPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 AILYAKWDSHFRKNVEKTIPYSDKLFEMVLGSPPYTVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SKQPASQ QKQKGDTSAS TAGDTLSVPAPVVQHEE IK D P TGEGKPKPATSEEASS
Sbjct: 121 SKQPASQPQKQKGDTSASTTAGDTLSVPAPVVQHEELIKTDHPETGEGKPKPATSEEASS 180
Query: 671 TSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXXX 850
TSVRERPPEEVAARLAQQEKQEQVKIESL KSLEDALSQ+A
Sbjct: 181 TSVRERPPEEVAARLAQQEKQEQVKIESLAKSLEDALSQTARITQQAIVAQNAAVQAVTA 240
Query: 851 XXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIEN 1030
LK AMDDSE+AG+KKSAQWRTVEGALKERRKAV SVIEN
Sbjct: 241 HANILKAAMDDSEIAGDKKSAQWRTVEGALKERRKAVDGAADALLKAKEELEKMKSVIEN 300
Query: 1031 AKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFKR 1210
AKKEEVAGAKSHITAAEGKLH+MI+DLDNVVQKVQAAQSEAKVVSQYHELVVQAR+DFKR
Sbjct: 301 AKKEEVAGAKSHITAAEGKLHNMIIDLDNVVQKVQAAQSEAKVVSQYHELVVQAREDFKR 360
Query: 1211 ELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHIA 1390
ELDSITPEV PGWKGM IAHAHRRIDQLNRALAEQKATEKQHIA
Sbjct: 361 ELDSITPEVLPGWKGMTDKLSADDLNAL-----IAHAHRRIDQLNRALAEQKATEKQHIA 415
Query: 1391 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 1570
LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT
Sbjct: 416 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 475
Query: 1571 DHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 1750
DHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ
Sbjct: 476 DHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 535
Query: 1751 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQA 1930
AVQSH+VAEEEARK HQLWLSVEAL+Y MKTAS DLPTVPLGSAVEA+RASCSDSEF QA
Sbjct: 536 AVQSHSVAEEEARKVHQLWLSVEALRYRMKTASADLPTVPLGSAVEAIRASCSDSEFAQA 595
Query: 1931 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXXX 2110
LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRN
Sbjct: 596 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPP 655
Query: 2111 XXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAELCPED TF LL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 656 QQLKPPAELCPEDADTFTLLSYASYCLEHGDLELAAKFVNQLKGES 701
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,221,467
Number of extensions: 1846243
Number of successful extensions: 8158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8021
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,041,694
Effective search space: 8972642466
Effective search space used: 8972642466
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002960
(2248 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865301.1| PREDICTED: similar to Mitochondrial inner membr... 1051 0.0
Alignment gi|XP_865317.1| PREDICTED: similar to Mitochondrial inner membr... 1050 0.0
Alignment gi|XP_852196.1| PREDICTED: similar to Mitochondrial inner membr... 1044 0.0
Alignment gi|XP_532974.2| PREDICTED: similar to Mitochondrial inner membr... 1040 0.0
Alignment gi|XP_865237.1| PREDICTED: similar to Mitochondrial inner membr... 1014 0.0
Alignment gi|XP_865268.1| PREDICTED: similar to Mitochondrial inner membr... 981 0.0
Alignment gi|XP_865251.1| PREDICTED: similar to Mitochondrial inner membr... 971 0.0
Alignment gi|XP_865284.1| PREDICTED: similar to Mitochondrial inner membr... 968 0.0
Alignment gi|XP_865335.1| PREDICTED: similar to Mitochondrial inner membr... 818 0.0
Alignment gi|XP_854171.1| PREDICTED: hypothetical protein XP_849078 [Cani... 50 9e-06
>ref|XP_865301.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 7 [Canis familiaris].
Length = 747
Score = 1051 bits (2718), Expect = 0.0
Identities = 558/706 (79%), Positives = 580/706 (82%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SKQPASQLQKQKG+ + + T GDT SVPAP VQHEESIK P GEG+PKPA SEEASS
Sbjct: 121 SKQPASQLQKQKGEGTPASTPGDTPSVPAPAVQHEESIKTGHPGIGEGQPKPAASEEASS 180
Query: 671 TSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXXX 850
TSVRERPPEEVAARLAQQEKQEQVKIES+ KSLEDALSQ+A+
Sbjct: 181 TSVRERPPEEVAARLAQQEKQEQVKIESVAKSLEDALSQTAHITQQAIVAQNAAVQAVNA 240
Query: 851 XXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIEN 1030
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV SVIEN
Sbjct: 241 HSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIEN 300
Query: 1031 AKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFKR 1210
AKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYHELVVQARDDFKR
Sbjct: 301 AKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYHELVVQARDDFKR 360
Query: 1211 ELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHIA 1390
ELDSITPEV PGWKGM IAHAHRRIDQLNR LAEQKATEKQHIA
Sbjct: 361 ELDSITPEVLPGWKGMSISDLADKLSTDDLNSLIAHAHRRIDQLNRELAEQKATEKQHIA 420
Query: 1391 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 1570
LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEMRTQLRRQAAAHT
Sbjct: 421 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEMRTQLRRQAAAHT 480
Query: 1571 DHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 1750
DHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ
Sbjct: 481 DHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 540
Query: 1751 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQA 1930
AVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+R +C+DSEF QA
Sbjct: 541 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAIRVNCADSEFAQA 600
Query: 1931 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXXX 2110
LTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 601 LTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPP 660
Query: 2111 XXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 661 QQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 706
>ref|XP_865317.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 8 [Canis familiaris].
Length = 747
Score = 1050 bits (2716), Expect = 0.0
Identities = 558/706 (79%), Positives = 578/706 (81%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SKQPASQLQKQKG+ AGDT SVPAP VQHEESIK P GEG+PKPA SEEASS
Sbjct: 121 SKQPASQLQKQKGEARVISAAGDTPSVPAPAVQHEESIKTGHPGIGEGQPKPAASEEASS 180
Query: 671 TSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXXX 850
TSVRERPPEEVAARLAQQEKQEQVKIES+ KSLEDALSQ+A+
Sbjct: 181 TSVRERPPEEVAARLAQQEKQEQVKIESVAKSLEDALSQTAHITQQAIVAQNAAVQAVNA 240
Query: 851 XXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIEN 1030
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV SVIEN
Sbjct: 241 HSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIEN 300
Query: 1031 AKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFKR 1210
AKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYHELVVQARDDFKR
Sbjct: 301 AKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYHELVVQARDDFKR 360
Query: 1211 ELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHIA 1390
ELDSITPEV PGWKGM IAHAHRRIDQLNR LAEQKATEKQHIA
Sbjct: 361 ELDSITPEVLPGWKGMSISDLADKLSTDDLNSLIAHAHRRIDQLNRELAEQKATEKQHIA 420
Query: 1391 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 1570
LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEMRTQLRRQAAAHT
Sbjct: 421 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEMRTQLRRQAAAHT 480
Query: 1571 DHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 1750
DHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ
Sbjct: 481 DHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 540
Query: 1751 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQA 1930
AVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+R +C+DSEF QA
Sbjct: 541 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAIRVNCADSEFAQA 600
Query: 1931 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXXX 2110
LTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 601 LTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPP 660
Query: 2111 XXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 661 QQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 706
>ref|XP_852196.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 2 [Canis familiaris].
Length = 759
Score = 1044 bits (2700), Expect = 0.0
Identities = 559/718 (77%), Positives = 581/718 (80%), Gaps = 12/718 (1%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASIT------------AGDTLSVPAPVVQHEESIKADRPATGEG 634
SKQPASQLQKQKG+ + + T AGDT SVPAP VQHEESIK P GEG
Sbjct: 121 SKQPASQLQKQKGEGTPASTPGPTEAARVISAAGDTPSVPAPAVQHEESIKTGHPGIGEG 180
Query: 635 KPKPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXX 814
+PKPA SEEASSTSVRERPPEEVAARLAQQEKQEQVKIES+ KSLEDALSQ+A+
Sbjct: 181 QPKPAASEEASSTSVRERPPEEVAARLAQQEKQEQVKIESVAKSLEDALSQTAHITQQAI 240
Query: 815 XXXXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXX 994
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV
Sbjct: 241 VAQNAAVQAVNAHSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAK 300
Query: 995 XXXXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYH 1174
SVIENAKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYH
Sbjct: 301 EELEKMKSVIENAKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYH 360
Query: 1175 ELVVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRAL 1354
ELVVQARDDFKRELDSITPEV PGWKGM IAHAHRRIDQLNR L
Sbjct: 361 ELVVQARDDFKRELDSITPEVLPGWKGMSISDLADKLSTDDLNSLIAHAHRRIDQLNREL 420
Query: 1355 AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEM 1534
AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEM
Sbjct: 421 AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEM 480
Query: 1535 RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDI 1714
RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDI
Sbjct: 481 RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDI 540
Query: 1715 NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAV 1894
NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+
Sbjct: 541 NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAI 600
Query: 1895 RASCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXX 2074
R +C+DSEF QALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 601 RVNCADSEFAQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYF 660
Query: 2075 XXXXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 661 LSYLQSLLLFPPQQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 718
>ref|XP_532974.2| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 1 [Canis familiaris].
Length = 754
Score = 1040 bits (2689), Expect = 0.0
Identities = 559/718 (77%), Positives = 581/718 (80%), Gaps = 12/718 (1%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASIT------------AGDTLSVPAPVVQHEESIKADRPATGEG 634
SKQPASQLQKQKG+ + + T AGDT SVPAP VQHEESIK P GEG
Sbjct: 121 SKQPASQLQKQKGEGTPASTPGPTEAARVISAAGDTPSVPAPAVQHEESIKTGHPGIGEG 180
Query: 635 KPKPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXX 814
+PKPA SEEASSTSVRERPPEEVAARLAQQEKQEQVKIES+ KSLEDALSQ+A+
Sbjct: 181 QPKPAASEEASSTSVRERPPEEVAARLAQQEKQEQVKIESVAKSLEDALSQTAHITQQAI 240
Query: 815 XXXXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXX 994
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV
Sbjct: 241 VAQNAAVQAVNAHSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAK 300
Query: 995 XXXXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYH 1174
SVIENAKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYH
Sbjct: 301 EELEKMKSVIENAKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYH 360
Query: 1175 ELVVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRAL 1354
ELVVQARDDFKRELDSITPEV PGWKGM IAHAHRRIDQLNR L
Sbjct: 361 ELVVQARDDFKRELDSITPEVLPGWKGMTDKLSTDDLNSL-----IAHAHRRIDQLNREL 415
Query: 1355 AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEM 1534
AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEM
Sbjct: 416 AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEM 475
Query: 1535 RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDI 1714
RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDI
Sbjct: 476 RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDI 535
Query: 1715 NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAV 1894
NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+
Sbjct: 536 NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAI 595
Query: 1895 RASCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXX 2074
R +C+DSEF QALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 596 RVNCADSEFAQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYF 655
Query: 2075 XXXXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 656 LSYLQSLLLFPPQQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 713
>ref|XP_865237.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 3 [Canis familiaris].
Length = 759
Score = 1014 bits (2621), Expect = 0.0
Identities = 552/727 (75%), Positives = 576/727 (79%), Gaps = 21/727 (2%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK ++SGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPVRSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASIT---------------------AGDTLSVPAPVVQHEESIK 607
SKQPASQLQKQKG+ + + T AGDT SVPAP VQHEESIK
Sbjct: 121 SKQPASQLQKQKGEGTPASTPVRLLEALPENADEAARVISAAGDTPSVPAPAVQHEESIK 180
Query: 608 ADRPATGEGKPKPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQ 787
P GEG+PKPA EASSTSVRERPPEEVAARLAQQEKQEQVKIES+ KSLEDALSQ
Sbjct: 181 TGHPGIGEGQPKPA---EASSTSVRERPPEEVAARLAQQEKQEQVKIESVAKSLEDALSQ 237
Query: 788 SAYXXXXXXXXXXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXX 967
+A+ LK AMD+SE +KKSAQWRTVEGALKERRKAV
Sbjct: 238 TAHITQQAIVAQNAAVQAVNAHSNILKAAMDNSEEP-DKKSAQWRTVEGALKERRKAVDE 296
Query: 968 XXXXXXXXXXXXXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQS 1147
SVIENAKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQS
Sbjct: 297 AADALLKAKEELEKMKSVIENAKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQS 356
Query: 1148 EAKVVSQYHELVVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHR 1327
EAKVVSQYHELVVQARDDFKRELDSITPEV PGWKGM IAHAHR
Sbjct: 357 EAKVVSQYHELVVQARDDFKRELDSITPEVLPGWKGMTDKLSTDDLNSL-----IAHAHR 411
Query: 1328 RIDQLNRALAEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEE 1507
RIDQLNR LAEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEE
Sbjct: 412 RIDQLNRELAEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEE 471
Query: 1508 VRDAMENEMRTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQE 1687
VRDAMENEMRTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQE
Sbjct: 472 VRDAMENEMRTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQE 531
Query: 1688 QVDNFTLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTV 1867
QVDNFTLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTV
Sbjct: 532 QVDNFTLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTV 591
Query: 1868 PLGSAVEAVRASCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDE 2047
PLGSAVEA+R +C+DSEF QALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDE
Sbjct: 592 PLGSAVEAIRVNCADSEFAQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDE 651
Query: 2048 TRNXXXXXXXXXXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFV 2227
TRN KPPAEL PED +TFKLL+YASY EHGDLELAAKFV
Sbjct: 652 TRNSLYQYFLSYLQSLLLFPPQQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFV 711
Query: 2228 NQLKGES 2248
NQLKGES
Sbjct: 712 NQLKGES 718
>ref|XP_865268.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 5 [Canis familiaris].
Length = 715
Score = 981 bits (2535), Expect = 0.0
Identities = 534/706 (75%), Positives = 557/706 (78%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SKQPASQLQKQKG+ + + T PV + E+ EEA S
Sbjct: 121 SKQPASQLQKQKGEGTPAST---------PVEEKREN------------------EEAGS 153
Query: 671 TSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXXX 850
SVRERPPEEVAARLAQQEKQEQVKIES+ KSLEDALSQ+A+
Sbjct: 154 LSVRERPPEEVAARLAQQEKQEQVKIESVAKSLEDALSQTAHITQQAIVAQNAAVQAVNA 213
Query: 851 XXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIEN 1030
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV SVIEN
Sbjct: 214 HSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIEN 273
Query: 1031 AKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFKR 1210
AKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYHELVVQARDDFKR
Sbjct: 274 AKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYHELVVQARDDFKR 333
Query: 1211 ELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHIA 1390
ELDSITPEV PGWKGM IAHAHRRIDQLNR LAEQKATEKQHIA
Sbjct: 334 ELDSITPEVLPGWKGMTDKLSTDDLNSL-----IAHAHRRIDQLNRELAEQKATEKQHIA 388
Query: 1391 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 1570
LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEMRTQLRRQAAAHT
Sbjct: 389 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEMRTQLRRQAAAHT 448
Query: 1571 DHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 1750
DHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ
Sbjct: 449 DHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 508
Query: 1751 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQA 1930
AVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+R +C+DSEF QA
Sbjct: 509 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAIRVNCADSEFAQA 568
Query: 1931 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXXX 2110
LTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 569 LTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPP 628
Query: 2111 XXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 629 QQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 674
>ref|XP_865251.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 4 [Canis familiaris].
Length = 710
Score = 971 bits (2509), Expect = 0.0
Identities = 525/706 (74%), Positives = 548/706 (77%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SKQPASQLQKQKG+ + + T GDT SVPAP VQHEESIK P GEG+PKPA S
Sbjct: 121 SKQPASQLQKQKGEGTPASTPGDTPSVPAPAVQHEESIKTGHPGIGEGQPKPAAS----- 175
Query: 671 TSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXXX 850
++ KSLEDALSQ+A+
Sbjct: 176 ---------------------------AVAKSLEDALSQTAHITQQAIVAQNAAVQAVNA 208
Query: 851 XXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIEN 1030
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV SVIEN
Sbjct: 209 HSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIEN 268
Query: 1031 AKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFKR 1210
AKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYHELVVQARDDFKR
Sbjct: 269 AKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYHELVVQARDDFKR 328
Query: 1211 ELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHIA 1390
ELDSITPEV PGWKGM IAHAHRRIDQLNR LAEQKATEKQHIA
Sbjct: 329 ELDSITPEVLPGWKGMTDKLSTDDLNSL-----IAHAHRRIDQLNRELAEQKATEKQHIA 383
Query: 1391 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 1570
LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEMRTQLRRQAAAHT
Sbjct: 384 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEMRTQLRRQAAAHT 443
Query: 1571 DHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 1750
DHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ
Sbjct: 444 DHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 503
Query: 1751 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQA 1930
AVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+R +C+DSEF QA
Sbjct: 504 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAIRVNCADSEFAQA 563
Query: 1931 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXXX 2110
LTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 564 LTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPP 623
Query: 2111 XXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 624 QQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 669
>ref|XP_865284.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 6 [Canis familiaris].
Length = 727
Score = 968 bits (2502), Expect = 0.0
Identities = 526/718 (73%), Positives = 549/718 (76%), Gaps = 12/718 (1%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLGSPPY+VPLPKK IQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGSPPYSVPLPKKPIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASIT------------AGDTLSVPAPVVQHEESIKADRPATGEG 634
SKQPASQLQKQKG+ + + T AGDT SVPAP VQHEESIK P GEG
Sbjct: 121 SKQPASQLQKQKGEGTPASTPGPTEAARVISAAGDTPSVPAPAVQHEESIKTGHPGIGEG 180
Query: 635 KPKPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXX 814
+PKPA S ++ KSLEDALSQ+A+
Sbjct: 181 QPKPAAS--------------------------------AVAKSLEDALSQTAHITQQAI 208
Query: 815 XXXXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXX 994
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV
Sbjct: 209 VAQNAAVQAVNAHSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAK 268
Query: 995 XXXXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYH 1174
SVIENAKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYH
Sbjct: 269 EELEKMKSVIENAKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYH 328
Query: 1175 ELVVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRAL 1354
ELVVQARDDFKRELDSITPEV PGWKGM IAHAHRRIDQLNR L
Sbjct: 329 ELVVQARDDFKRELDSITPEVLPGWKGMSISDLADKLSTDDLNSLIAHAHRRIDQLNREL 388
Query: 1355 AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEM 1534
AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEM
Sbjct: 389 AEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEM 448
Query: 1535 RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDI 1714
RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDI
Sbjct: 449 RTQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDI 508
Query: 1715 NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAV 1894
NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+
Sbjct: 509 NTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAI 568
Query: 1895 RASCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXX 2074
R +C+DSEF QALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 569 RVNCADSEFAQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYF 628
Query: 2075 XXXXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 629 LSYLQSLLLFPPQQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 686
>ref|XP_865335.1| PREDICTED: similar to Mitochondrial inner membrane protein
(Mitofilin) (p87/89) (Proliferation-inducing gene 4
protein) isoform 9 [Canis familiaris].
Length = 681
Score = 818 bits (2112), Expect = 0.0
Identities = 464/707 (65%), Positives = 495/707 (70%), Gaps = 1/707 (0%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRP+RPCRRYSTSGSSRLSPGK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPIRPCRRYSTSGSSRLSPGKIVGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTI PY+ L + + S P
Sbjct: 61 TILYAKWDSHFRESVEKTI--------------PYSDKLFEMVLGSPPY----------- 95
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SVP P KP + + SS
Sbjct: 96 -------------------------SVPLPK-----------------KPIQSGPLKISS 113
Query: 671 TSVRERPPEEVAARLAQQEKQ-EQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXX 847
S + ++ A++L +Q+ + ++ KSLEDALSQ+A+
Sbjct: 114 VSEVMKESKQPASQLQKQKGEGTPASTPAVAKSLEDALSQTAHITQQAIVAQNAAVQAVN 173
Query: 848 XXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIE 1027
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV SVIE
Sbjct: 174 AHSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIE 233
Query: 1028 NAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFK 1207
NAKKEEV GAKSHITAAEGKLH+MIVDLDNVVQKV+AAQSEAKVVSQYHELVVQARDDFK
Sbjct: 234 NAKKEEVPGAKSHITAAEGKLHNMIVDLDNVVQKVKAAQSEAKVVSQYHELVVQARDDFK 293
Query: 1208 RELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHI 1387
RELDSITPEV PGWKGM IAHAHRRIDQLNR LAEQKATEKQHI
Sbjct: 294 RELDSITPEVLPGWKGMSISDLADKLSTDDLNSLIAHAHRRIDQLNRELAEQKATEKQHI 353
Query: 1388 ALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAH 1567
ALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQD+KVEEVRDAMENEMRTQLRRQAAAH
Sbjct: 354 ALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDKKVEEVRDAMENEMRTQLRRQAAAH 413
Query: 1568 TDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIE 1747
TDHLRDVLRVQEQELKYEFEQDLSEKL EQELQFRRLSQEQVDNFTLDINTAYARLRGIE
Sbjct: 414 TDHLRDVLRVQEQELKYEFEQDLSEKLAEQELQFRRLSQEQVDNFTLDINTAYARLRGIE 473
Query: 1748 QAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQ 1927
QAVQSHAVAEEEARKAHQLWLSVEALKYSMKTAS DLPTVPLGSAVEA+R +C+DSEF Q
Sbjct: 474 QAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASADLPTVPLGSAVEAIRVNCADSEFAQ 533
Query: 1928 ALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXX 2107
ALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 534 ALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFP 593
Query: 2108 XXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 594 PQQLKPPAELSPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 640
>ref|XP_854171.1| PREDICTED: hypothetical protein XP_849078 [Canis familiaris].
Length = 411
Score = 50.1 bits (118), Expect = 9e-06
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 11/181 (6%)
Frame = +2
Query: 1349 ALAEQKATEKQHIALALEK----QKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRD 1516
+L E++ E++ + ALE+ L E+RA + + L+ R E+ + +
Sbjct: 135 SLEEEEEEEEERVGQALEQLGVAPVLGEQRAVRTLWTR-LQRERPELLGSFEDVLMRASA 193
Query: 1517 AMENEMRTQ------LRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRL 1678
+E R + LRR+ + H +R + EQ+L+ + ++ ++ L +E R L
Sbjct: 194 CLEEAARERDSLEQALRRRESEHEREVRCLYEEMEQQLREQRQRLRTQDLPREER--RGL 251
Query: 1679 SQEQVDNFTLDINTAYARLRGIEQAVQSHAVAEEEARKAH-QLWLSVEALKYSMKTASPD 1855
+ ++ N ++ A R R +EQ +Q+ A + EA+ + QLWL+ EAL+ ++ A
Sbjct: 252 LELELQNRDQELERAGLRQRELEQQLQARASEQLEAQAQNAQLWLAHEALRTQLEGAQEQ 311
Query: 1856 L 1858
L
Sbjct: 312 L 312
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,465,587
Number of extensions: 1904462
Number of successful extensions: 9160
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8903
Number of HSP's successfully gapped: 11
Length of query: 749
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 639
Effective length of database: 15,207,544
Effective search space: 9717620616
Effective search space used: 9717620616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002960
(2248 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093640.1| mitochondrial inner membrane protein isoform... 1034 0.0
Alignment gi|NP_006830.2| mitochondrial inner membrane protein isoform 1 ... 1026 0.0
Alignment gi|NP_001093639.1| mitochondrial inner membrane protein isoform... 1019 0.0
>ref|NP_001093640.1| mitochondrial inner membrane protein isoform 3 [Homo sapiens].
Length = 747
Score = 1034 bits (2674), Expect = 0.0
Identities = 550/706 (77%), Positives = 575/706 (81%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRPLRPCRRYSTSGSS L+ GK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPLRPCRRYSTSGSSGLTTGKIAGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLG Y VPLPKKSIQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGPAAYNVPLPKKSIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITAGDTLSVPAPVVQHEESIKADRPATGEGKPKPATSEEASS 670
SKQPASQLQKQKGDT AS TAGDTLSVPAP VQ EES+K D P GEGKP PA SEEASS
Sbjct: 121 SKQPASQLQKQKGDTPASATAGDTLSVPAPAVQPEESLKTDHPEIGEGKPTPALSEEASS 180
Query: 671 TSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXXXXXXXXXXXX 850
+S+RERPPEEVAARLAQQEKQEQVKIESL KSLEDAL Q+A
Sbjct: 181 SSIRERPPEEVAARLAQQEKQEQVKIESLAKSLEDALRQTASVTLQAIAAQNAAVQAVNA 240
Query: 851 XXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXXXXXXXSVIEN 1030
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV SVIEN
Sbjct: 241 HSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIEN 300
Query: 1031 AKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHELVVQARDDFKR 1210
AKK+EVAGAK HITAAEGKLH+MIVDLDNVV+KVQAAQSEAKVVSQYHELVVQARDDFKR
Sbjct: 301 AKKKEVAGAKPHITAAEGKLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQARDDFKR 360
Query: 1211 ELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAEQKATEKQHIA 1390
ELDSITPEV PGWKGM IAHAHRRIDQLNR LAEQKATEKQHI
Sbjct: 361 ELDSITPEVLPGWKGMSVSDLADKLSTDDLNSLIAHAHRRIDQLNRELAEQKATEKQHIT 420
Query: 1391 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHT 1570
LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRK+EEVRDAMENEMRTQLRRQAAAHT
Sbjct: 421 LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKIEEVRDAMENEMRTQLRRQAAAHT 480
Query: 1571 DHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 1750
DHLRDVLRVQEQELK EFEQ+LSEKL+EQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ
Sbjct: 481 DHLRDVLRVQEQELKSEFEQNLSEKLSEQELQFRRLSQEQVDNFTLDINTAYARLRGIEQ 540
Query: 1751 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRASCSDSEFTQA 1930
AVQSHAVAEEEARKAHQLWLSVEALKYSMKT+S + PT+PLGSAVEA++A+CSD+EFTQA
Sbjct: 541 AVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAETPTIPLGSAVEAIKANCSDNEFTQA 600
Query: 1931 LTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXXXXXXXXXXXX 2110
LTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 601 LTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPP 660
Query: 2111 XXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPP ELCPED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 661 QQLKPPPELCPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 706
>ref|NP_006830.2| mitochondrial inner membrane protein isoform 1 [Homo sapiens].
Length = 758
Score = 1026 bits (2652), Expect = 0.0
Identities = 550/717 (76%), Positives = 575/717 (80%), Gaps = 11/717 (1%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRPLRPCRRYSTSGSS L+ GK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPLRPCRRYSTSGSSGLTTGKIAGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLG Y VPLPKKSIQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGPAAYNVPLPKKSIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITA-----------GDTLSVPAPVVQHEESIKADRPATGEGK 637
SKQPASQLQKQKGDT AS TA GDTLSVPAP VQ EES+K D P GEGK
Sbjct: 121 SKQPASQLQKQKGDTPASATAPTEAAQIISAAGDTLSVPAPAVQPEESLKTDHPEIGEGK 180
Query: 638 PKPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXX 817
P PA SEEASS+S+RERPPEEVAARLAQQEKQEQVKIESL KSLEDAL Q+A
Sbjct: 181 PTPALSEEASSSSIRERPPEEVAARLAQQEKQEQVKIESLAKSLEDALRQTASVTLQAIA 240
Query: 818 XXXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXX 997
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV
Sbjct: 241 AQNAAVQAVNAHSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKE 300
Query: 998 XXXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHE 1177
SVIENAKK+EVAGAK HITAAEGKLH+MIVDLDNVV+KVQAAQSEAKVVSQYHE
Sbjct: 301 ELEKMKSVIENAKKKEVAGAKPHITAAEGKLHNMIVDLDNVVKKVQAAQSEAKVVSQYHE 360
Query: 1178 LVVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALA 1357
LVVQARDDFKRELDSITPEV PGWKGM IAHAHRRIDQLNR LA
Sbjct: 361 LVVQARDDFKRELDSITPEVLPGWKGMSVSDLADKLSTDDLNSLIAHAHRRIDQLNRELA 420
Query: 1358 EQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMR 1537
EQKATEKQHI LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRK+EEVRDAMENEMR
Sbjct: 421 EQKATEKQHITLALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKIEEVRDAMENEMR 480
Query: 1538 TQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDIN 1717
TQLRRQAAAHTDHLRDVLRVQEQELK EFEQ+LSEKL+EQELQFRRLSQEQVDNFTLDIN
Sbjct: 481 TQLRRQAAAHTDHLRDVLRVQEQELKSEFEQNLSEKLSEQELQFRRLSQEQVDNFTLDIN 540
Query: 1718 TAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVR 1897
TAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKT+S + PT+PLGSAVEA++
Sbjct: 541 TAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAETPTIPLGSAVEAIK 600
Query: 1898 ASCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXX 2077
A+CSD+EFTQALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 601 ANCSDNEFTQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFL 660
Query: 2078 XXXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPP ELCPED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 661 SYLQSLLLFPPQQLKPPPELCPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 717
>ref|NP_001093639.1| mitochondrial inner membrane protein isoform 2 [Homo sapiens].
Length = 757
Score = 1019 bits (2635), Expect = 0.0
Identities = 549/717 (76%), Positives = 574/717 (80%), Gaps = 11/717 (1%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT+ AQSCLCGKFVLRPLRPCRRYSTSGSS L+ GK
Sbjct: 1 MLRACQLSGVTAAAQSCLCGKFVLRPLRPCRRYSTSGSSGLTTGKIAGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLFEMVLG Y VPLPKKSIQSGPLKISSVSEVMKE
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFEMVLGPAAYNVPLPKKSIQSGPLKISSVSEVMKE 120
Query: 491 SKQPASQLQKQKGDTSASITA-----------GDTLSVPAPVVQHEESIKADRPATGEGK 637
SKQPASQLQKQKGDT AS TA GDTLSVPAP VQ EES+K D P GEGK
Sbjct: 121 SKQPASQLQKQKGDTPASATAPTEAAQIISAAGDTLSVPAPAVQPEESLKTDHPEIGEGK 180
Query: 638 PKPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXX 817
P PA SE ASS+S+RERPPEEVAARLAQQEKQEQVKIESL KSLEDAL Q+A
Sbjct: 181 PTPALSE-ASSSSIRERPPEEVAARLAQQEKQEQVKIESLAKSLEDALRQTASVTLQAIA 239
Query: 818 XXXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXX 997
LK AMD+SE+AGEKKSAQWRTVEGALKERRKAV
Sbjct: 240 AQNAAVQAVNAHSNILKAAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKE 299
Query: 998 XXXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHE 1177
SVIENAKK+EVAGAK HITAAEGKLH+MIVDLDNVV+KVQAAQSEAKVVSQYHE
Sbjct: 300 ELEKMKSVIENAKKKEVAGAKPHITAAEGKLHNMIVDLDNVVKKVQAAQSEAKVVSQYHE 359
Query: 1178 LVVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALA 1357
LVVQARDDFKRELDSITPEV PGWKGM IAHAHRRIDQLNR LA
Sbjct: 360 LVVQARDDFKRELDSITPEVLPGWKGMSVSDLADKLSTDDLNSLIAHAHRRIDQLNRELA 419
Query: 1358 EQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMR 1537
EQKATEKQHI LALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRK+EEVRDAMENEMR
Sbjct: 420 EQKATEKQHITLALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKIEEVRDAMENEMR 479
Query: 1538 TQLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDIN 1717
TQLRRQAAAHTDHLRDVLRVQEQELK EFEQ+LSEKL+EQELQFRRLSQEQVDNFTLDIN
Sbjct: 480 TQLRRQAAAHTDHLRDVLRVQEQELKSEFEQNLSEKLSEQELQFRRLSQEQVDNFTLDIN 539
Query: 1718 TAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVR 1897
TAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKT+S + PT+PLGSAVEA++
Sbjct: 540 TAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAETPTIPLGSAVEAIK 599
Query: 1898 ASCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXX 2077
A+CSD+EFTQALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 600 ANCSDNEFTQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFL 659
Query: 2078 XXXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPP ELCPED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 660 SYLQSLLLFPPQQLKPPPELCPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 716
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,131,136
Number of extensions: 1879430
Number of successful extensions: 8648
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8424
Number of HSP's successfully gapped: 3
Length of query: 749
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,671,124
Effective search space: 9374848236
Effective search space used: 9374848236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002960
(2248 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083949.2| mitochondrial inner membrane protein [Mus muscu... 978 0.0
Alignment gi|NP_001156570.1| trichohyalin [Mus musculus]. 51 4e-06
>ref|NP_083949.2| mitochondrial inner membrane protein [Mus musculus].
Length = 757
Score = 978 bits (2527), Expect = 0.0
Identities = 519/716 (72%), Positives = 565/716 (78%), Gaps = 10/716 (1%)
Frame = +2
Query: 131 MLRACHLSGVTSTAQSCLCGKFVLRPLRPCRRYSTSGSSRLSPGKXXXXXXXXXXXXXXX 310
MLRAC LSGVT AQSCLCGKFVLRPLRPCRRYSTS SS L+ GK
Sbjct: 1 MLRACQLSGVTVAAQSCLCGKFVLRPLRPCRRYSTSSSSGLTAGKIAGAGLLFVGGGIGG 60
Query: 311 XXXYAKWDSHFRTNVEKTIPYSDKLFEMVLGSPPYTVPLPKKSIQSGPLKISSVSEVMKE 490
YAKWDSHFR +VEKTIPYSDKLF MVLGS PYTVPLPKK +QSGPLKISSVSEVMK+
Sbjct: 61 TILYAKWDSHFRESVEKTIPYSDKLFGMVLGSAPYTVPLPKKPVQSGPLKISSVSEVMKD 120
Query: 491 SKQPASQLQKQKGDTSASIT----------AGDTLSVPAPVVQHEESIKADRPATGEGKP 640
SK P +Q QK KGDT AS AGDTLSVPAP VQHE++IK + P T EGK
Sbjct: 121 SKLPVAQSQKTKGDTPASAASTGAAQIISAAGDTLSVPAPAVQHEDTIKTECPNTNEGKS 180
Query: 641 KPATSEEASSTSVRERPPEEVAARLAQQEKQEQVKIESLVKSLEDALSQSAYXXXXXXXX 820
T+EEA S+SVRERPPEEVAARLAQQEKQEQV++ESL KSLEDAL++++
Sbjct: 181 TSETTEEAFSSSVRERPPEEVAARLAQQEKQEQVEMESLAKSLEDALNRTSSVTLQTITA 240
Query: 821 XXXXXXXXXXXXXXLKTAMDDSEVAGEKKSAQWRTVEGALKERRKAVXXXXXXXXXXXXX 1000
LKTAMD+SE+AGEKKSAQWRTVEGALKERRKAV
Sbjct: 241 QNAAVQAVKAHSNILKTAMDNSEIAGEKKSAQWRTVEGALKERRKAVDEAADALLKAKEE 300
Query: 1001 XXXXXSVIENAKKEEVAGAKSHITAAEGKLHSMIVDLDNVVQKVQAAQSEAKVVSQYHEL 1180
++IE+AKK E+AGA HITAAEG+LH+MIVDLDNVV+KVQAAQSEAKVVSQYHEL
Sbjct: 301 LEKMKTIIEDAKKREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYHEL 360
Query: 1181 VVQARDDFKRELDSITPEVSPGWKGMXXXXXXXXXXXXXXXXXIAHAHRRIDQLNRALAE 1360
VVQARDDF++ELDSITP+++PGWKGM IAHAHRRIDQLNR LA+
Sbjct: 361 VVQARDDFRKELDSITPDITPGWKGMSISDLAGKLSTDDLNSLIAHAHRRIDQLNRELAQ 420
Query: 1361 QKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRT 1540
QKATEKQHI LALEK KLEEKR FDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRT
Sbjct: 421 QKATEKQHIELALEKHKLEEKRTFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRT 480
Query: 1541 QLRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLSQEQVDNFTLDINT 1720
QLRRQAAAHTDHLRDVL+VQEQELKYEFEQ LSEKL+EQEL+FRR SQEQ+D+FTLDINT
Sbjct: 481 QLRRQAAAHTDHLRDVLKVQEQELKYEFEQGLSEKLSEQELEFRRRSQEQMDSFTLDINT 540
Query: 1721 AYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTASPDLPTVPLGSAVEAVRA 1900
AYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKT+S ++PT+PLGSAVEA+R
Sbjct: 541 AYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAEMPTIPLGSAVEAIRV 600
Query: 1901 SCSDSEFTQALTAALPPESLTRGVYSEETLRVRFYAVQKLARRVAMIDETRNXXXXXXXX 2080
+CSD+EFTQALTAA+PPESLTRGVYSEETLR RFYAVQKLARRVAMIDETRN
Sbjct: 601 NCSDNEFTQALTAAIPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLS 660
Query: 2081 XXXXXXXXXXXXXKPPAELCPEDTSTFKLLAYASYLHEHGDLELAAKFVNQLKGES 2248
KPPAEL PED +TFKLL+YASY EHGDLELAAKFVNQLKGES
Sbjct: 661 YLQSLLLFPPKQLKPPAELYPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGES 716
>ref|NP_001156570.1| trichohyalin [Mus musculus].
Length = 1599
Score = 50.8 bits (120), Expect = 4e-06
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Frame = +2
Query: 1334 DQLNRALAEQKATEKQHIALALEKQKLEEKRAFDSAVAKALEHHRS-EIQAEQDRKVEEV 1510
+QL R ++K E+Q + Q+LEE+R D + + E R E++ EQ+ + E+
Sbjct: 1209 EQLRRQERDRKVREEQEL-----DQELEEERLRDRKIRREQELRREQELRREQEFRREQG 1263
Query: 1511 --RDAMENEMRTQ-LRRQAAAHTDHLRDVLRVQEQELKYEFEQDLSEKLTEQELQFRRLS 1681
R+ E +R + +RR + LR QE++ K+ EQ+L ++L E+ L+ R++
Sbjct: 1264 LRREREEERLRDRKIRRDQELRQGLEEEQLRRQERDRKFREEQELGQELEEERLRDRKIR 1323
Query: 1682 QEQVDNFTLDINTAYARLRGIEQAVQSHAVAEEEARK 1792
+EQ + RL E+ + H EE+ R+
Sbjct: 1324 REQELRRERE-QEQRRRLEREEEQQRLHEREEEQRRR 1359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,741,959
Number of extensions: 1578132
Number of successful extensions: 7531
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7223
Number of HSP's successfully gapped: 2
Length of query: 749
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 640
Effective length of database: 12,343,635
Effective search space: 7899926400
Effective search space used: 7899926400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002960
(2248 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,158,131
Number of extensions: 1184962
Number of successful extensions: 5319
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5244
Number of HSP's successfully gapped: 0
Length of query: 749
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 643
Effective length of database: 8,704,850
Effective search space: 5597218550
Effective search space used: 5597218550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002960
(2248 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 938 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 938 bits (473), Expect = 0.0
Identities = 487/489 (99%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 1761 gtcatgcagtagctgaagaggaggccagaaaagcccaccaactctggctctcggtggagg 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487328 gtcatgcagtagctgaagaggaggccagaaaagcccaccaactctggctctcggtggagg 61487387
Query: 1821 cattaaagtacagcatgaagacggcgtccccagatctgcccactgttcccctggggagcg 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487388 cattaaagtacagcatgaagacggcgtccccagatctgcccactgttcccctggggagcg 61487447
Query: 1881 cggtcgaggccgtcagagccagctgctccgattctgaatttacccaggctctaaccgcag 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487448 cggtcgaggccgtcagagccagctgctccgattctgaatttacccaggctctaaccgcag 61487507
Query: 1941 ctctccctccagagtccctgacccgaggcgtgtatagtgaagagacccttagagtccgtt 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487508 ctctccctccagagtccctgacccgaggcgtgtatagtgaagagacccttagagtccgtt 61487567
Query: 2001 tctatgccgtccagaaactggcccgaagagtagccatgattgatgagaccagaaatagct 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487568 tctatgccgtccagaaactggcccgaagagtagccatgattgatgagaccagaaatagct 61487627
Query: 2061 tataccagtacttcctctcctacttacagtccctgctcctgttcccacctcagcagctga 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487628 tataccagtacttcctctcctacttacagtccctgctcctgttcccacctcagcagctga 61487687
Query: 2121 agccaccggcagagctctgccctgaggataccagcacatttaaattactggcctatgcct 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487688 agccaccggcagagctctgccctgaggataccagcacatttaaattactggcctatgcct 61487747
Query: 2181 cctatttgca-tgagcatggtgacctggagctggcagctaagtttgtcaatcagctgaaa 2239
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61487748 ccta-ttgcattgagcatggtgacctggagctggcagctaagtttgtcaatcagctgaaa 61487806
Query: 2240 ggggagtcc 2248
|||||||||
Sbjct: 61487807 ggggagtcc 61487815
Score = 446 bits (225), Expect = e-122
Identities = 228/229 (99%)
Strand = Plus / Plus
Query: 1272 tagctgacaggctgtctgcggatgacctgaactccctgattgctcacgcgcatcgccgca 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61482245 tagctgacaggctgtctgcggatgacctgaactccctgattgctcacgcgcatcgccgca 61482304
Query: 1332 ttgaccagctgaacagggctctggctgaacagaaagccacagagaagcagcatatcgccc 1391
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61482305 ttgaccagctgaacagggcgctggctgaacagaaagccacagagaagcagcatatcgccc 61482364
Query: 1392 tagccttggagaaacagaagctggaggaaaagcgggcatttgactctgccgtggcaaaag 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61482365 tagccttggagaaacagaagctggaggaaaagcgggcatttgactctgccgtggcaaaag 61482424
Query: 1452 cattagaacatcatagaagtgagatacaggctgaacaggacagaaaggt 1500
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61482425 cattagaacatcatagaagtgagatacaggctgaacaggacagaaaggt 61482473
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 249 ggttgtctcctggcaaaattgccggcgctggcattttattcgttggtggtggtattggtg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61451477 ggttgtctcctggcaaaattgccggcgctggcattttattcgttggtggtggtattggtg 61451536
Query: 309 gcactattctgtatgccaaatgggattcgcatttccggacaaatgtagagaaaaccatac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61451537 gcactattctgtatgccaaatgggattcgcatttccggacaaatgtagagaaaaccatac 61451596
Query: 369 cttattcagacaaactctttgaaatggttcttggttccccaccttatactgttccattac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61451597 cttattcagacaaactctttgaaatggttcttggttccccaccttatactgttccattac 61451656
Query: 429 caaagaagtcg 439
|||||||||||
Sbjct: 61451657 caaagaagtcg 61451667
Score = 347 bits (175), Expect = 2e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 1 cttccggtacgcagggcgcggacaggcggcacggacgcaagcacgcttgcgcgcgcgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61248628 cttccggtacgcagggcgcggacaggcggcacggacgcaagcacgcttgcgcgcgcgcac 61248569
Query: 61 ggtctccccttctcgcgccgccgccgcccctgctctcacttagacccgcagcgccgtccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61248568 ggtctccccttctcgcgccgccgccgcccctgctctcacttagacccgcagcgccgtccg 61248509
Query: 121 ccgcgccgagatgctgcgggcctgtcatttatccggcgtgacctccaccgcccag 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61248508 ccgcgccgagatgctgcgggcctgtcatttatccggcgtgacctccaccgcccag 61248454
Score = 276 bits (139), Expect = 5e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 753 cactagtcaagagcttagaagatgctctgagtcaatctgcttatatcactcagcaggcta 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61461979 cactagtcaagagcttagaagatgctctgagtcaatctgcttatatcactcagcaggcta 61462038
Query: 813 ttgtggctcagaatgctgcggtccaggctgtcactgcccatgccaacatactgaaaacag 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61462039 ttgtggctcagaatgctgcggtccaggctgtcactgcccatgccaacatactgaaaacag 61462098
Query: 873 ccatggatgattctgaggt 891
|||||||||||||||||||
Sbjct: 61462099 ccatggatgattctgaggt 61462117
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 994 agaagagttagagaagctgaaaagtgtaattgaaaatgcaaagaaagaagaggttgctgg 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61468723 agaagagttagagaagctgaaaagtgtaattgaaaatgcaaagaaagaagaggttgctgg 61468782
Query: 1054 ggccaagtctcacataactgctgcagaggggaaacttcatagcatgatagttgatctgga 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61468783 ggccaagtctcacataactgctgcagaggggaaacttcatagcatgatagttgatctgga 61468842
Query: 1114 taatgtggtccaaaaggt 1131
||||||||||||||||||
Sbjct: 61468843 taatgtggtccaaaaggt 61468860
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1128 aggttcaagcagctcagtctgaggctaaggttgtgtctcagtatcatgagctggtggtcc 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61469369 aggttcaagcagctcagtctgaggctaaggttgtgtctcagtatcatgagctggtggtcc 61469428
Query: 1188 aagcccgggatgactttaaacgagaactggacagtattactcccgaagtctcgccagggt 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61469429 aagcccgggatgactttaaacgagaactggacagtattactcccgaagtctcgccagggt 61469488
Query: 1248 ggaaagggatgagta 1262
|||||||||||||||
Sbjct: 61469489 ggaaagggatgagta 61469503
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1497 aggtcgaggaagtcagagatgccatggagaatgaaatgagaacccagcttcgccgacagg 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61485036 aggtcgaggaagtcagagatgccatggagaatgaaatgagaacccagcttcgccgacagg 61485095
Query: 1557 ctgctgcccacaccgatcacttacgagatgtcctcagggtccaagaacaggaactgaaat 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61485096 ctgctgcccacaccgatcacttacgagatgtcctcagggtccaagaacaggaactgaaat 61485155
Query: 1617 atgaatttgagcagg 1631
|||||||||||||||
Sbjct: 61485156 atgaatttgagcagg 61485170
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1628 caggacctatctgagaaactcactgaacaagaattacagtttcgtcggctcagtcaagag 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61486229 caggacctatctgagaaactcactgaacaagaattacagtttcgtcggctcagtcaagag 61486288
Query: 1688 caagtcgacaacttcactctggatataaacactgcctatgccagactgagaggaatcgag 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61486289 caagtcgacaacttcactctggatataaacactgcctatgccagactgagaggaatcgag 61486348
Query: 1748 caggctgttcagagt 1762
|||||||||||||||
Sbjct: 61486349 caggctgttcagagt 61486363
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 439 gattcagtctggtccactaaaaatctctagtgtatcagaggtaatgaaagaatctaaaca 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61453852 gattcagtctggtccactaaaaatctctagtgtatcagaggtaatgaaagaatctaaaca 61453911
Query: 499 gcctgcttcacaactccaaaaacaaaagggagacacttcagcttcaataacag 551
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61453912 gcctgcttcacaactccaaaaacaaaagggagacacttcagcttcaataacag 61453964
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 549 cagcaggtgatacactgtcggtcccagcccctgtggttcagcatgaggaatctataaaag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61456293 cagcaggtgatacactgtcggtcccagcccctgtggttcagcatgaggaatctataaaag 61456352
Query: 609 ccgatcgccctgcaactggtgaaggaaaacctaagcctgcaacttcag 656
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61456353 ccgatcgccctgcaactggtgaaggaaaacctaagcctgcaacttcag 61456400
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 888 aggttgcaggtgagaagaagtcagctcagtggcgcacagtggagggtgcattgaaggaac 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61466475 aggttgcaggtgagaagaagtcagctcagtggcgcacagtggagggtgcattgaaggaac 61466534
Query: 948 gcaggaaggcagtggatgaggctgccgatgcccttctcaaagccaa 993
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61466535 gcaggaaggcagtggatgaggctgccgatgcccttctcaaagccaa 61466580
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 655 agaggaagcatcctcaacttctgtaagggaacggccacctgaagaagttgcagctcggct 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61456763 agaggaagcatcctcaacttctgtaagggaacggccacctgaagaagttgcagctcggct 61456822
Query: 715 tgcacaacaggaaaagcaagaacaagttaagattgagt 752
||||||||||||||||||||||||||||||||||||||
Sbjct: 61456823 tgcacaacaggaaaagcaagaacaagttaagattgagt 61456860
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 174 agagttgtctctgtgggaagtttgtcctccgtccactccgaccatgccgcagatactcca 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61449511 agagttgtctctgtgggaagtttgtcctccgtccactccgaccatgccgcagatactcca 61449570
Query: 234 cctcaggcagttcccggt 251
||||||||||||||||||
Sbjct: 61449571 cctcaggcagttcccggt 61449588
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 65,833,775
Number of extensions: 440
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 14
Length of query: 2248
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2226
Effective length of database: 2,808,408,574
Effective search space: 6251517485724
Effective search space used: 6251517485724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)