Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002962
(1149 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193048.1| microtubule-associated protein 1B [Bos tauru... 579 0.0
Alignment gi|XP_002696312.1| PREDICTED: microtubule-associated protein 1B... 579 0.0
Alignment gi|XP_002696853.1| PREDICTED: microtubule-associated protein 1A... 295 2e-98
Alignment gi|XP_593636.4| PREDICTED: microtubule-associated protein 1A-li... 295 2e-98
Alignment gi|XP_002704770.1| PREDICTED: microtubule-associated protein 1S... 271 4e-85
Alignment gi|NP_001095584.1| microtubule-associated protein 1S [Bos tauru... 269 2e-84
>ref|NP_001193048.1| microtubule-associated protein 1B [Bos taurus].
Length = 2463
Score = 579 bits (1492), Expect(2) = 0.0
Identities = 290/290 (100%), Positives = 290/290 (100%)
Frame = +3
Query: 111 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 290
MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE
Sbjct: 1 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 60
Query: 291 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 470
LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV
Sbjct: 61 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 120
Query: 471 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 650
STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP
Sbjct: 121 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 180
Query: 651 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 830
ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP
Sbjct: 181 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 240
Query: 831 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 980
SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER
Sbjct: 241 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 290
Score = 94.0 bits (232), Expect(2) = 0.0
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEEQS GSTT
Sbjct: 290 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTT 341
>ref|XP_002696312.1| PREDICTED: microtubule-associated protein 1B [Bos taurus].
Length = 2463
Score = 579 bits (1492), Expect(2) = 0.0
Identities = 290/290 (100%), Positives = 290/290 (100%)
Frame = +3
Query: 111 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 290
MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE
Sbjct: 1 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 60
Query: 291 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 470
LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV
Sbjct: 61 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 120
Query: 471 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 650
STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP
Sbjct: 121 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 180
Query: 651 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 830
ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP
Sbjct: 181 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 240
Query: 831 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 980
SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER
Sbjct: 241 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 290
Score = 94.0 bits (232), Expect(2) = 0.0
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEEQS GSTT
Sbjct: 290 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTT 341
>ref|XP_002696853.1| PREDICTED: microtubule-associated protein 1A-like [Bos taurus].
Length = 3031
Score = 295 bits (755), Expect(2) = 2e-98
Identities = 140/255 (54%), Positives = 198/255 (77%)
Frame = +3
Query: 216 KFYLLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVP 395
K LL+V+G+I TE LR ++E GI SW+ +L +L+Q+L+LF++RH A FS EV
Sbjct: 40 KHSLLIVIGDIATESQLRAVRAHLEQGILSWNIDLSSIDLNQQLRLFITRHLAHFSSEVK 99
Query: 396 GQKILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSG 575
GQ+ L H+S++LETV+L+NPS +++S+EV +++ + HKLL+L+GQ E G+LILQSG
Sbjct: 100 GQRTLCHQSEILETVILVNPSADSISSEVHHLLSSPSAHKLLILSGQSLEPGGDLILQSG 159
Query: 576 SFSFQNFIEIFTDQEIGELLSTTHPANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLN 755
++S+QNF ++ + EI +LLS P +A LT+ C EGDW S+L + Q+ ++++LN
Sbjct: 160 TYSYQNFAQVLQNPEIAQLLSNRDPGIQAFLTVSCLGEGDW--SHLGLSSSQETLHLRLN 217
Query: 756 SASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALF 935
LP M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALF
Sbjct: 218 PEPTLPTMDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALF 277
Query: 936 AVNGFNMLINGGSER 980
AVNGFN+L++GGS+R
Sbjct: 278 AVNGFNILVDGGSDR 292
Score = 84.0 bits (206), Expect(2) = 2e-98
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 292 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 343
>ref|XP_593636.4| PREDICTED: microtubule-associated protein 1A-like isoform 1 [Bos
taurus].
Length = 3031
Score = 295 bits (755), Expect(2) = 2e-98
Identities = 140/255 (54%), Positives = 198/255 (77%)
Frame = +3
Query: 216 KFYLLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVP 395
K LL+V+G+I TE LR ++E GI SW+ +L +L+Q+L+LF++RH A FS EV
Sbjct: 40 KHSLLIVIGDIATESQLRAVRAHLEQGILSWNIDLSSIDLNQQLRLFITRHLAHFSSEVK 99
Query: 396 GQKILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSG 575
GQ+ L H+S++LETV+L+NPS +++S+EV +++ + HKLL+L+GQ E G+LILQSG
Sbjct: 100 GQRTLCHQSEILETVILVNPSADSISSEVHHLLSSPSAHKLLILSGQSLEPGGDLILQSG 159
Query: 576 SFSFQNFIEIFTDQEIGELLSTTHPANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLN 755
++S+QNF ++ + EI +LLS P +A LT+ C EGDW S+L + Q+ ++++LN
Sbjct: 160 TYSYQNFAQVLQNPEIAQLLSNRDPGIQAFLTVSCLGEGDW--SHLGLSSSQETLHLRLN 217
Query: 756 SASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALF 935
LP M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALF
Sbjct: 218 PEPTLPTMDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALF 277
Query: 936 AVNGFNMLINGGSER 980
AVNGFN+L++GGS+R
Sbjct: 278 AVNGFNILVDGGSDR 292
Score = 84.0 bits (206), Expect(2) = 2e-98
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 292 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 343
>ref|XP_002704770.1| PREDICTED: microtubule-associated protein 1S-like [Bos taurus].
Length = 1147
Score = 271 bits (692), Expect(2) = 4e-85
Identities = 139/257 (54%), Positives = 181/257 (70%), Gaps = 1/257 (0%)
Frame = +3
Query: 225 LLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQK 404
LLVV GE L + +E GIRSWD + C+LD++LK+FVSRHSA FS V GQ+
Sbjct: 18 LLVVGGECGCRGLLAYVLEELERGIRSWDIDPGVCSLDEQLKVFVSRHSATFSSIVKGQR 77
Query: 405 ILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFS 584
LHHR D LET+VL+NPSD+++ E+R ++ D A HKLLVL G C E TGEL+LQ+G FS
Sbjct: 78 SLHHRGDTLETLVLLNPSDKSLCDELRNLLLDPASHKLLVLAGPCLEETGELLLQTGGFS 137
Query: 585 FQNFIEIFTDQEIGELL-STTHPANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSA 761
++F+++ D+EI +LL ST PA LT+ CP GDW + LQ ++++LN
Sbjct: 138 PRHFLQVLGDKEIRDLLASTPPPAAPPKLTITCPTFGDWARLAPEVPGLQGVLHLRLNPP 197
Query: 762 SILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAV 941
LP EGL EF EY++ES+E PSPF++LEPP S GFL+L++PCCYIFPGG GD+A FAV
Sbjct: 198 VQLPASEGLREFLEYVAESLEPPSPFELLEPPASVGFLRLARPCCYIFPGGLGDAAFFAV 257
Query: 942 NGFNMLINGGSERNPAS 992
NGF +L+NGGS NP S
Sbjct: 258 NGFTVLVNGGS--NPKS 272
Score = 63.5 bits (153), Expect(2) = 4e-85
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +2
Query: 980 KSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGST 1129
KS FWKL+RHLDRVD++L+TH G + LPG+NS+L K AE +E + G +
Sbjct: 271 KSSFWKLVRHLDRVDAVLVTHAGADSLPGLNSLLRRKLAERDEAAAGGGS 320
>ref|NP_001095584.1| microtubule-associated protein 1S [Bos taurus].
Length = 1066
Score = 269 bits (687), Expect(2) = 2e-84
Identities = 138/257 (53%), Positives = 180/257 (70%), Gaps = 1/257 (0%)
Frame = +3
Query: 225 LLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQK 404
LLVV GE L + +E GIRSWD + C+LD++LK+FVSRHSA FS V GQ+
Sbjct: 18 LLVVGGECGCRGLLAYVLEELERGIRSWDIDPGVCSLDEQLKVFVSRHSATFSSIVKGQR 77
Query: 405 ILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFS 584
LHHR D LET+VL+NPSD+++ E+R ++ D A HKLLVL G C E TGEL+LQ+G FS
Sbjct: 78 SLHHRGDTLETLVLLNPSDKSLCDELRNLLLDTASHKLLVLAGPCLEETGELLLQTGGFS 137
Query: 585 FQNFIEIFTDQEIGELL-STTHPANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSA 761
++F+++ D+EI +LL ST PA LT+ CP GDW + LQ ++++LN
Sbjct: 138 PRHFLQVLGDKEIRDLLASTPPPAAPPKLTITCPTFGDWARLAPEVPGLQGVLHLRLNPP 197
Query: 762 SILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAV 941
LP EGL EF EY++ES+E PSPF++LEPP S G L+L++PCCYIFPGG GD+A FAV
Sbjct: 198 VQLPASEGLREFLEYVAESLEPPSPFELLEPPASVGLLRLARPCCYIFPGGLGDAAFFAV 257
Query: 942 NGFNMLINGGSERNPAS 992
NGF +L+NGGS NP S
Sbjct: 258 NGFTVLVNGGS--NPKS 272
Score = 63.5 bits (153), Expect(2) = 2e-84
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +2
Query: 980 KSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGST 1129
KS FWKL+RHLDRVD++L+TH G + LPG+NS+L K AE +E + G +
Sbjct: 271 KSSFWKLVRHLDRVDAVLVTHAGADSLPGLNSLLRRKLAERDEAAAGGGS 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,497,251
Number of extensions: 1270382
Number of successful extensions: 4521
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4499
Number of HSP's successfully gapped: 12
Length of query: 383
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 279
Effective length of database: 14,240,222
Effective search space: 3973021938
Effective search space used: 3973021938
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002962
(1149 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535269.2| PREDICTED: similar to Microtubule-associated pr... 573 0.0
Alignment gi|XP_859857.1| PREDICTED: similar to Microtubule-associated pr... 293 5e-98
Alignment gi|XP_862172.1| PREDICTED: similar to Microtubule-associated pr... 143 5e-56
Alignment gi|XP_535449.2| PREDICTED: similar to Microtubule-associated pr... 129 9e-49
>ref|XP_535269.2| PREDICTED: similar to Microtubule-associated protein 1B (MAP 1B)
isoform 1 [Canis familiaris].
Length = 2470
Score = 573 bits (1478), Expect(2) = 0.0
Identities = 286/290 (98%), Positives = 289/290 (99%)
Frame = +3
Query: 111 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 290
MATVV+EAAEPEP+G IANPAA+TSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE
Sbjct: 1 MATVVLEAAEPEPAGGIANPAASTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 60
Query: 291 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 470
LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV
Sbjct: 61 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 120
Query: 471 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 650
STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP
Sbjct: 121 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 180
Query: 651 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 830
ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP
Sbjct: 181 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 240
Query: 831 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 980
SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER
Sbjct: 241 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 290
Score = 94.0 bits (232), Expect(2) = 0.0
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEEQS GSTT
Sbjct: 290 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTT 341
>ref|XP_859857.1| PREDICTED: similar to Microtubule-associated protein 1A (MAP 1A)
(Proliferation-related protein p80) isoform 2 [Canis
familiaris].
Length = 3018
Score = 293 bits (751), Expect(2) = 5e-98
Identities = 139/255 (54%), Positives = 198/255 (77%)
Frame = +3
Query: 216 KFYLLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVP 395
K LL+V+G+I TE LR ++E GI SW+ +L +L+Q+L+LF++RH A FS EV
Sbjct: 40 KHSLLIVIGDIGTESQLRAVRAHLEQGILSWNIDLSSFDLNQQLRLFITRHLAHFSSEVK 99
Query: 396 GQKILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSG 575
GQ+ L H+S++LET++L+NPS E++S+E+ +++ + HKLL+L+GQ E G+LILQSG
Sbjct: 100 GQRTLSHQSEILETIILVNPSAESISSELHHLLSSPSAHKLLILSGQSLEPGGDLILQSG 159
Query: 576 SFSFQNFIEIFTDQEIGELLSTTHPANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLN 755
++S+QNF ++ + EI +LLS P +A LT+ C EGDW S+L + Q+ ++++LN
Sbjct: 160 TYSYQNFAQVLHNPEIAQLLSNRDPGIQAFLTVSCLGEGDW--SHLGLSSSQETLHLRLN 217
Query: 756 SASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALF 935
LP M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALF
Sbjct: 218 PEPTLPTMDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALF 277
Query: 936 AVNGFNMLINGGSER 980
AVNGFN+L++GGS+R
Sbjct: 278 AVNGFNILVDGGSDR 292
Score = 84.0 bits (206), Expect(2) = 5e-98
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 292 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 343
>ref|XP_862172.1| PREDICTED: similar to Microtubule-associated protein 1B (MAP 1B)
isoform 2 [Canis familiaris].
Length = 2248
Score = 143 bits (361), Expect(2) = 5e-56
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +3
Query: 777 MEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNM 956
MEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNM
Sbjct: 1 MEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNM 60
Query: 957 LINGGSER 980
LINGGSER
Sbjct: 61 LINGGSER 68
Score = 94.0 bits (232), Expect(2) = 5e-56
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEEQS GSTT
Sbjct: 68 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTT 119
>ref|XP_535449.2| PREDICTED: similar to Microtubule-associated protein 1A (MAP 1A)
(Proliferation-related protein p80) isoform 1 [Canis
familiaris].
Length = 2794
Score = 129 bits (324), Expect(2) = 9e-49
Identities = 56/68 (82%), Positives = 68/68 (100%)
Frame = +3
Query: 777 MEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNM 956
M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFN+
Sbjct: 1 MDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNI 60
Query: 957 LINGGSER 980
L++GGS+R
Sbjct: 61 LVDGGSDR 68
Score = 84.0 bits (206), Expect(2) = 9e-49
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 68 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,767,740
Number of extensions: 1318147
Number of successful extensions: 5080
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5066
Number of HSP's successfully gapped: 8
Length of query: 383
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 278
Effective length of database: 15,374,224
Effective search space: 4274034272
Effective search space used: 4274034272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002962
(1149 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005900.2| microtubule-associated protein 1B [Homo sapiens]. 576 0.0
Alignment gi|NP_060644.4| microtubule-associated protein 1S [Homo sapiens]. 268 1e-83
Alignment gi|NP_002364.5| microtubule-associated protein 1A [Homo sapiens]. 129 8e-49
>ref|NP_005900.2| microtubule-associated protein 1B [Homo sapiens].
Length = 2468
Score = 576 bits (1484), Expect(2) = 0.0
Identities = 288/290 (99%), Positives = 289/290 (99%)
Frame = +3
Query: 111 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 290
MATVVVEA EPEPSGSIANPAA+TSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE
Sbjct: 1 MATVVVEATEPEPSGSIANPAASTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 60
Query: 291 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 470
LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV
Sbjct: 61 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 120
Query: 471 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 650
STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP
Sbjct: 121 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 180
Query: 651 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 830
ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP
Sbjct: 181 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 240
Query: 831 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 980
SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER
Sbjct: 241 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 290
Score = 94.0 bits (232), Expect(2) = 0.0
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEEQS GSTT
Sbjct: 290 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTT 341
>ref|NP_060644.4| microtubule-associated protein 1S [Homo sapiens].
Length = 1059
Score = 268 bits (685), Expect(2) = 1e-83
Identities = 139/259 (53%), Positives = 180/259 (69%), Gaps = 3/259 (1%)
Frame = +3
Query: 225 LLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQK 404
LLVV E + L + +E GIRSWD + CNLD++LK+FVSRHSA FS V GQ+
Sbjct: 17 LLVVGSEFGSPGLLTYVLEELERGIRSWDVDPGVCNLDEQLKVFVSRHSATFSSIVKGQR 76
Query: 405 ILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFS 584
LHHR D LET+VL+NPSD+++ E+R ++ D A HKLLVL G C E TGEL+LQ+G FS
Sbjct: 77 SLHHRGDNLETLVLLNPSDKSLYDELRNLLLDPASHKLLVLAGPCLEETGELLLQTGGFS 136
Query: 585 FQNFIEIFTDQEIGELLSTT-HPANKASLTLFCPEEGDWKNSNLDRHNLQDF--INIKLN 755
+F+++ D+EI ++L+TT P LT+ CP GDW LQ + ++LN
Sbjct: 137 PHHFLQVLKDREIRDILATTPPPVQPPILTITCPTFGDWAQLAPAVPGLQGALRLQLRLN 196
Query: 756 SASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALF 935
+ LP EGL EF EY++ES+E PSPF++LEPPTSGGFL+L +PCCYIFPGG GD+A F
Sbjct: 197 PPAQLPNSEGLCEFLEYVAESLEPPSPFELLEPPTSGGFLRLGRPCCYIFPGGLGDAAFF 256
Query: 936 AVNGFNMLINGGSERNPAS 992
AVNGF +L+NGGS NP S
Sbjct: 257 AVNGFTVLVNGGS--NPKS 273
Score = 61.6 bits (148), Expect(2) = 1e-83
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 980 KSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGST 1129
KS FWKL+RHLDRVD++L+TH G + LPG+NS+L K AE E + G +
Sbjct: 272 KSSFWKLVRHLDRVDAVLVTHPGADSLPGLNSLLRRKLAERSEVAAGGGS 321
>ref|NP_002364.5| microtubule-associated protein 1A [Homo sapiens].
Length = 2803
Score = 129 bits (324), Expect(2) = 8e-49
Identities = 56/68 (82%), Positives = 68/68 (100%)
Frame = +3
Query: 777 MEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNM 956
M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFN+
Sbjct: 1 MDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNI 60
Query: 957 LINGGSER 980
L++GGS+R
Sbjct: 61 LVDGGSDR 68
Score = 84.0 bits (206), Expect(2) = 8e-49
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 68 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,748,877
Number of extensions: 1297631
Number of successful extensions: 4333
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 6
Length of query: 383
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 279
Effective length of database: 14,868,908
Effective search space: 4148425332
Effective search space used: 4148425332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002962
(1149 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032660.2| microtubule-associated protein 1B [Mus musculus]. 572 0.0
Alignment gi|NP_115769.1| microtubule-associated protein 1A isoform 1 [Mu... 293 5e-98
Alignment gi|NP_766601.2| microtubule-associated protein 1S [Mus musculus]. 249 2e-78
Alignment gi|NP_001166977.1| microtubule-associated protein 1A isoform 2 ... 129 7e-49
>ref|NP_032660.2| microtubule-associated protein 1B [Mus musculus].
Length = 2464
Score = 572 bits (1475), Expect(2) = 0.0
Identities = 286/290 (98%), Positives = 287/290 (98%)
Frame = +3
Query: 111 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 290
MATVVVEA EPEPSGSI NPAA+TSPSLSHRFLDSKFYLLVVVGE VTEEHLRRAIGNIE
Sbjct: 1 MATVVVEATEPEPSGSIGNPAASTSPSLSHRFLDSKFYLLVVVGETVTEEHLRRAIGNIE 60
Query: 291 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 470
LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV
Sbjct: 61 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 120
Query: 471 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 650
STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP
Sbjct: 121 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 180
Query: 651 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 830
ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP
Sbjct: 181 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 240
Query: 831 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 980
SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER
Sbjct: 241 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 290
Score = 90.9 bits (224), Expect(2) = 0.0
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEE+S GST+
Sbjct: 290 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEERSQGSTS 341
>ref|NP_115769.1| microtubule-associated protein 1A isoform 1 [Mus musculus].
Length = 3014
Score = 293 bits (750), Expect(2) = 5e-98
Identities = 138/255 (54%), Positives = 198/255 (77%)
Frame = +3
Query: 216 KFYLLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVP 395
K+ LL+V+G+I TE LR ++E GI SW+ +L +L+Q+L+LF++RH A FS EV
Sbjct: 54 KYSLLIVIGDIGTESQLRAVRAHLEQGILSWNIDLSSFDLNQQLRLFITRHLAHFSSEVK 113
Query: 396 GQKILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHKLLVLTGQCFENTGELILQSG 575
GQ+ L H+S+ LET++L+NP+ +++S+EV +++ + HKLL+L+GQ E G+LILQSG
Sbjct: 114 GQRTLCHQSETLETIILVNPTADSISSEVHHLLSSPSAHKLLILSGQTLEPEGDLILQSG 173
Query: 576 SFSFQNFIEIFTDQEIGELLSTTHPANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLN 755
++S+QNF ++ EI +LLS P +A LT+ C EGDW S+L + Q+ ++++LN
Sbjct: 174 TYSYQNFAQVLHKPEIAQLLSNRDPGIQAFLTVSCLGEGDW--SHLGLSSSQETLHLRLN 231
Query: 756 SASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALF 935
+LP M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALF
Sbjct: 232 PEPVLPTMDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALF 291
Query: 936 AVNGFNMLINGGSER 980
AVNGFN+L++GGS+R
Sbjct: 292 AVNGFNILVDGGSDR 306
Score = 84.0 bits (206), Expect(2) = 5e-98
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 306 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 357
>ref|NP_766601.2| microtubule-associated protein 1S [Mus musculus].
Length = 973
Score = 249 bits (635), Expect(2) = 2e-78
Identities = 133/279 (47%), Positives = 182/279 (65%), Gaps = 1/279 (0%)
Frame = +3
Query: 159 IANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIELGIRSW-DTNLIECNL 335
+A P A +PS LLVV GE L + +E G+RSW D + C+L
Sbjct: 5 MAAPEAVEAPS--------SLLLLVVGGECGCPGLLAYVMEELERGVRSWEDVDPAVCSL 56
Query: 336 DQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAVSTEVRLMITDAARHK 515
D++LK FVSRHSA FS V GQ+ LHHR + LET+VL+NPSD+++ E+R ++ D A HK
Sbjct: 57 DEQLKAFVSRHSATFSSIVKGQRSLHHRGETLETLVLLNPSDKSLCDELRNLLMDPAPHK 116
Query: 516 LLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHPANKASLTLFCPEEGD 695
LLVL G C E TGEL+LQ+G FS +F+++ D+E+ + L++ A +LT+ CP GD
Sbjct: 117 LLVLAGPCLEETGELLLQTGGFSAHHFLQVLGDKEVQDALASAPAA--PALTVSCPTFGD 174
Query: 696 WKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSGGFL 875
W + ++LN + LP EGL F EY++ES+E PSPF++LEPP +GGFL
Sbjct: 175 WA-----LLGPVPGLQLRLNPPAQLPASEGLRAFLEYVAESLEPPSPFELLEPPAAGGFL 229
Query: 876 KLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSERNPAS 992
+L++PCCY+FPGG GD+A FAVNGF +L+NGGS NP S
Sbjct: 230 RLARPCCYVFPGGLGDAAFFAVNGFTVLVNGGS--NPKS 266
Score = 62.8 bits (151), Expect(2) = 2e-78
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2
Query: 980 KSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSP 1120
KS FWKL+RHLDRVD++L+TH G + LPG+NS+L K AE E P
Sbjct: 265 KSSFWKLVRHLDRVDAVLVTHAGADSLPGLNSLLRRKLAEREAAAGP 311
>ref|NP_001166977.1| microtubule-associated protein 1A isoform 2 [Mus musculus].
Length = 2776
Score = 129 bits (324), Expect(2) = 7e-49
Identities = 56/68 (82%), Positives = 68/68 (100%)
Frame = +3
Query: 777 MEGLSEFTEYLSESVEVPSPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNM 956
M+G++EF+EY+SE+V+VPSPFD+LEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFN+
Sbjct: 1 MDGVAEFSEYVSETVDVPSPFDLLEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNI 60
Query: 957 LINGGSER 980
L++GGS+R
Sbjct: 61 LVDGGSDR 68
Score = 84.0 bits (206), Expect(2) = 7e-49
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKL+RHLDR+DS+LLTHIG ++LPGIN +L K AELEEEQS GS++
Sbjct: 68 RKSCFWKLVRHLDRIDSVLLTHIGADNLPGINGLLQRKVAELEEEQSQGSSS 119
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,346,694
Number of extensions: 1082412
Number of successful extensions: 3805
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3796
Number of HSP's successfully gapped: 8
Length of query: 383
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 280
Effective length of database: 12,523,851
Effective search space: 3506678280
Effective search space used: 3506678280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002962
(1149 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134080.1| PREDICTED: microtubule-associated protein 1B... 579 0.0
Alignment gi|NP_001230114.1| microtubule-associated protein 1S [Sus scrof... 270 3e-85
>ref|XP_003134080.1| PREDICTED: microtubule-associated protein 1B [Sus scrofa].
Length = 2474
Score = 579 bits (1492), Expect(2) = 0.0
Identities = 290/290 (100%), Positives = 290/290 (100%)
Frame = +3
Query: 111 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 290
MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE
Sbjct: 1 MATVVVEAAEPEPSGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIE 60
Query: 291 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 470
LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV
Sbjct: 61 LGIRSWDTNLIECNLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAV 120
Query: 471 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 650
STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP
Sbjct: 121 STEVRLMITDAARHKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELLSTTHP 180
Query: 651 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 830
ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP
Sbjct: 181 ANKASLTLFCPEEGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVP 240
Query: 831 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 980
SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER
Sbjct: 241 SPFDILEPPTSGGFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSER 290
Score = 94.0 bits (232), Expect(2) = 0.0
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +2
Query: 977 KKSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGSTT 1132
+KSCFWKLIRHLDRVDSILLTHIGD++LPGINSML K AELEEEQS GSTT
Sbjct: 290 RKSCFWKLIRHLDRVDSILLTHIGDDNLPGINSMLQRKIAELEEEQSQGSTT 341
>ref|NP_001230114.1| microtubule-associated protein 1S [Sus scrofa].
Length = 1065
Score = 270 bits (691), Expect(2) = 3e-85
Identities = 141/282 (50%), Positives = 191/282 (67%), Gaps = 1/282 (0%)
Frame = +3
Query: 150 SGSIANPAATTSPSLSHRFLDSKFYLLVVVGEIVTEEHLRRAIGNIELGIRSWDTNLIEC 329
+ ++A P A+ +PS LLVV GE + L + +E GIRSWD + C
Sbjct: 2 AAAVARPGASEAPSS---------LLLVVGGECGSPGLLAYVLEELERGIRSWDIDSGIC 52
Query: 330 NLDQELKLFVSRHSARFSPEVPGQKILHHRSDVLETVVLINPSDEAVSTEVRLMITDAAR 509
+L+++LK+FVSRHSA FS V GQ+ LHHR D LET+VL+NPSD+++ E+R ++ D A
Sbjct: 53 SLNEQLKVFVSRHSATFSNIVKGQRSLHHRGDTLETLVLLNPSDKSLCDELRNLLLDPAS 112
Query: 510 HKLLVLTGQCFENTGELILQSGSFSFQNFIEIFTDQEIGELL-STTHPANKASLTLFCPE 686
HKLLVL G C E TGEL+LQ+G FS ++F+++ D+EI +LL ST P + LT+ CP
Sbjct: 113 HKLLVLAGPCLEETGELLLQTGGFSPRHFLQVLGDKEIRDLLASTPPPVDPPKLTITCPT 172
Query: 687 EGDWKNSNLDRHNLQDFINIKLNSASILPEMEGLSEFTEYLSESVEVPSPFDILEPPTSG 866
GDW + LQ + ++LN LP EGL E EY++ES+E+PSPF++LEPP S
Sbjct: 173 FGDWAQLAPEVSGLQGVLQLQLNPPVHLPASEGLRELLEYVAESLELPSPFELLEPPASV 232
Query: 867 GFLKLSKPCCYIFPGGRGDSALFAVNGFNMLINGGSERNPAS 992
GFL+L++PCCYIFPGG GD+A FAVNGF +L+NGGS NP S
Sbjct: 233 GFLRLARPCCYIFPGGLGDAAFFAVNGFTVLVNGGS--NPKS 272
Score = 63.5 bits (153), Expect(2) = 3e-85
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +2
Query: 980 KSCFWKLIRHLDRVDSILLTHIGDEHLPGINSMLPAKNAELEEEQSPGST 1129
KS FWKL+RHLDRVD++L+TH G + LPG+NS+L K AE +E + G +
Sbjct: 271 KSSFWKLVRHLDRVDAVLVTHAGADSLPGLNSLLRRKLAERDEAAAGGGS 320
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,961,022
Number of extensions: 814526
Number of successful extensions: 2874
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2871
Number of HSP's successfully gapped: 4
Length of query: 383
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 282
Effective length of database: 8,829,335
Effective search space: 2489872470
Effective search space used: 2489872470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002962
(1149 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 948 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 948 bits (478), Expect = 0.0
Identities = 524/534 (98%), Gaps = 4/534 (0%)
Strand = Plus / Plus
Query: 619 agatcggggaattactgagtaccacccatcctgccaacaaagccagcttaaccctgttct 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52473786 agatcggggaattactgagtaccacccatcctgccaacaaagccagcttaaccctgttct 52473845
Query: 679 gtcccgaagaaggggactggaagaactccaatcttgacagacacaacctccaagacttca 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52473846 gtcccgaagaaggggactggaagaactccaatcttgacagacacaacctccaagacttca 52473905
Query: 739 tcaatatcaaactcaactccgcttcgatattgccagaaatggaaggactttctgagttta 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52473906 tcaatatcaaactcaactccgcttcgatattgccagaaatggaaggactttctgagttta 52473965
Query: 799 ccgagtatctctcggaatccgtggaggtcccatctccctttgatatcctagaacctccca 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52473966 ccgagtatctctcggaatccgtggaggtcccatctccctttgatatcctagaacctccca 52474025
Query: 859 catcagggggatttctaaagctctccaagccctgctgttacatttttccaggagggaggg 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52474026 catcagggggatttctaaagctctccaagccctgctgttacatttttccaggagggaggg 52474085
Query: 919 gagattctgcattgtttgcagtgaatggattcaatatgctcatcaacggaggatcagaaa 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52474086 gagattctgcattgtttgcagtgaatggattcaatatgctcatcaacggaggatcagaaa 52474145
Query: 979 g-aaatcctgcttctggaagctcatccgacacttggaccgagtggactccatcctgctca 1037
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52474146 gaaaatcctgcttctggaagctcatccgacacttggaccgagtggactccatcctgctca 52474205
Query: 1038 cccacattggggatgaacatttgcctggcattaacagcatgctcccagc-gaagaatgcc 1096
|||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 52474206 cccacattggggatgacaatttgcctggcataaacagcatgct-ccagcggaagattgcc 52474264
Query: 1097 gagctcgaggaagaacagtccccaggctccaccac-aatagtgactggatgaaa 1149
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 52474265 gagctcgaggaagaacagtcccagggctccaccacaaatagtgactggatgaaa 52474318
Score = 585 bits (295), Expect = e-164
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 cgcagggggcggagcggagacagcaccttcggagataatcctttctcctgccgcagagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52391913 cgcagggggcggagcggagacagcaccttcggagataatcctttctcctgccgcagagga 52391972
Query: 61 gaggagcggcccgagccggttacttcgccgaggcgtagccggccggcaggatggcgaccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52391973 gaggagcggcccgagccggttacttcgccgaggcgtagccggccggcaggatggcgaccg 52392032
Query: 121 tggtggtggaagccgccgagcctgagccgtccggcagcatcgccaacccggcggcgacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52392033 tggtggtggaagccgccgagcctgagccgtccggcagcatcgccaacccggcggcgacca 52392092
Query: 181 cctcgcccagcctgtcgcatcgcttcctcgacagcaagttctacctgctggtggtcgtcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52392093 cctcgcccagcctgtcgcatcgcttcctcgacagcaagttctacctgctggtggtcgtcg 52392152
Query: 241 gcgagatcgtgaccgaagagcacctgcgacgcgccatcggcaacattgagctcgg 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52392153 gcgagatcgtgaccgaagagcacctgcgacgcgccatcggcaacattgagctcgg 52392207
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 478 aggtgcgcttaatgatcacggacgccgcccgacacaagctgctcgtgttgacggggcagt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52467638 aggtgcgcttaatgatcacggacgccgcccgacacaagctgctcgtgttgacggggcagt 52467697
Query: 538 gctttgaaaataccggagagctcattctccaatccggctctttctcgttccagaacttca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52467698 gctttgaaaataccggagagctcattctccaatccggctctttctcgttccagaacttca 52467757
Query: 598 tagagattttcaccgatcaagag 620
|||||||||||||||||||||||
Sbjct: 52467758 tagagattttcaccgatcaagag 52467780
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 294 ggaatccgatcatgggacacaaacctgattgaatgcaacctggatcaagaactgaaactt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52401186 ggaatccgatcatgggacacaaacctgattgaatgcaacctggatcaagaactgaaactt 52401245
Query: 354 tttgtatccagacactctgccagattctcccctgaagttccagg 397
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52401246 tttgtatccagacactctgccagattctcccctgaagttccagg 52401289
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 394 caggacaaaagatccttcatcaccgaagtgacgttttagagacggtggtcctgatcaacc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52464862 caggacaaaagatccttcatcaccgaagtgacgttttagagacggtggtcctgatcaacc 52464921
Query: 454 cctcagatgaagcagtcagcaccgaggt 481
||||||||||||||||||||||||||||
Sbjct: 52464922 cctcagatgaagcagtcagcaccgaggt 52464949
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,538,238
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 5
Length of query: 1149
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1128
Effective length of database: 2,808,413,156
Effective search space: 3167890039968
Effective search space used: 3167890039968
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)