Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002965
(1179 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193347.1| signaling threshold-regulating transmembrane... 246 3e-65
>ref|NP_001193347.1| signaling threshold-regulating transmembrane adapter 1 [Bos
taurus].
Length = 185
Score = 246 bits (628), Expect = 3e-65
Identities = 127/184 (69%), Positives = 134/184 (72%), Gaps = 4/184 (2%)
Frame = +3
Query: 165 TPAVPSRGHNCTDL----LALGIPSVITAWGXXXXXXXXXXXXXXXXXXXXXQWTRGRSR 332
T A SR NCTD L GIPS+ WG QWT GRSR
Sbjct: 2 TTAGQSRLCNCTDHRTDELLTGIPSLTKGWGLWALLGAVTLLLLISLAVHLFQWTSGRSR 61
Query: 333 RHPGLGRSGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEPTPGSSARAAEEVMCYTSLQL 512
PG GRSGESV++VPLYGNLHYLQTGRLSQE GPD Q+ PG ARAAEEVMCYTSLQL
Sbjct: 62 SQPGHGRSGESVEDVPLYGNLHYLQTGRLSQEPGPDPQDSAPGGPARAAEEVMCYTSLQL 121
Query: 513 RPPQGRIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYANSQ 692
RPPQGR+PSP SPIKYSEV+LDSEP+PQAS PEPELYASVCAQ RRARASFPDQAYANS
Sbjct: 122 RPPQGRVPSPGSPIKYSEVLLDSEPKPQASDPEPELYASVCAQGRRARASFPDQAYANSH 181
Query: 693 PAPS 704
PAPS
Sbjct: 182 PAPS 185
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,627,054
Number of extensions: 1757385
Number of successful extensions: 8283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8210
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002965
(1179 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854735.1| PREDICTED: similar to SHP2-interacting transmem... 243 3e-64
>ref|XP_854735.1| PREDICTED: similar to SHP2-interacting transmembrane adaptor
protein [Canis familiaris].
Length = 181
Score = 243 bits (620), Expect = 3e-64
Identities = 127/179 (70%), Positives = 133/179 (74%), Gaps = 1/179 (0%)
Frame = +3
Query: 171 AVPSRGHNCT-DLLALGIPSVITAWGXXXXXXXXXXXXXXXXXXXXXQWTRGRSRRHPGL 347
AV SR N T DLL GIPSV AWG +WT G+ R HP
Sbjct: 3 AVMSRSDNYTSDLLVPGIPSVAQAWGLWALLAVVSLLLLISLAAHLFRWTSGQGRSHPKQ 62
Query: 348 GRSGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEPTPGSSARAAEEVMCYTSLQLRPPQG 527
RSG SV+EVPLYGNL YLQTGRLSQE GPDQQ+PTP A AAEEVMCYTSLQLRP QG
Sbjct: 63 ERSGGSVEEVPLYGNLPYLQTGRLSQEPGPDQQDPTPRGPAMAAEEVMCYTSLQLRPSQG 122
Query: 528 RIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYANSQPAPS 704
IPSP +PIKYSEVVLDSEP+PQASGPEPELYASVCAQTRRARASFPDQAYANSQPAPS
Sbjct: 123 HIPSPGTPIKYSEVVLDSEPKPQASGPEPELYASVCAQTRRARASFPDQAYANSQPAPS 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,865,657
Number of extensions: 1810611
Number of successful extensions: 8037
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7983
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002965
(1179 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055265.1| signaling threshold-regulating transmembrane ad... 272 5e-73
>ref|NP_055265.1| signaling threshold-regulating transmembrane adapter 1 precursor
[Homo sapiens].
Length = 196
Score = 272 bits (695), Expect = 5e-73
Identities = 135/180 (75%), Positives = 142/180 (78%)
Frame = +3
Query: 165 TPAVPSRGHNCTDLLALGIPSVITAWGXXXXXXXXXXXXXXXXXXXXXQWTRGRSRRHPG 344
T A SRG NCTDLLALGIPS+ AWG QWTRGRSR HPG
Sbjct: 17 TSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLAAHLSQWTRGRSRSHPG 76
Query: 345 LGRSGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEPTPGSSARAAEEVMCYTSLQLRPPQ 524
GRSGESV+EVPLYGNLHYLQTGRLSQ+ PDQQ+PT G ARAAEEVMCYTSLQLRPPQ
Sbjct: 77 QGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQ 136
Query: 525 GRIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYANSQPAPS 704
GRIP P +P+KYSEVVLDSEP+ QASGPEPELYASVCAQTRRARASFPDQAYANSQPA S
Sbjct: 137 GRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRARASFPDQAYANSQPAAS 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,686,520
Number of extensions: 1768942
Number of successful extensions: 7903
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7844
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002965
(1179 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062309.2| signaling threshold-regulating transmembrane ad... 222 4e-58
>ref|NP_062309.2| signaling threshold-regulating transmembrane adapter 1 [Mus
musculus].
Length = 180
Score = 222 bits (566), Expect = 4e-58
Identities = 118/179 (65%), Positives = 127/179 (70%), Gaps = 4/179 (2%)
Frame = +3
Query: 180 SRGHNCT--DLLALGIPSVITAWGXXXXXXXXXXXXXXXXXXXXXQWTRGRSRRHPGLGR 353
SR +NCT D LA GIPS+ AWG QWTRGR R G G
Sbjct: 2 SRDYNCTTDDQLAWGIPSISHAWGLWALLGVVTVLLLISLAALLSQWTRGRRRNQEGQGP 61
Query: 354 -SGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEP-TPGSSARAAEEVMCYTSLQLRPPQG 527
SG S +EVPLYGNLHYLQTGRLSQE ++Q+P + G AR AEE MCYTSLQLRP QG
Sbjct: 62 LSGRSAEEVPLYGNLHYLQTGRLSQEPRSEEQDPPSSGGLARGAEEAMCYTSLQLRPAQG 121
Query: 528 RIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYANSQPAPS 704
RIPS +PIKY EVVLDSEP+PQA GPEPELYASVCAQTRR RASFPDQAYANSQPAPS
Sbjct: 122 RIPSSGNPIKYCEVVLDSEPKPQAPGPEPELYASVCAQTRRGRASFPDQAYANSQPAPS 180
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,062,164
Number of extensions: 1450686
Number of successful extensions: 6215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6174
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002965
(1179 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928190.1| PREDICTED: signaling threshold-regulating tr... 333 1e-91
>ref|XP_001928190.1| PREDICTED: signaling threshold-regulating transmembrane adapter 1
[Sus scrofa].
Length = 186
Score = 333 bits (854), Expect = 1e-91
Identities = 165/186 (88%), Positives = 165/186 (88%)
Frame = +3
Query: 147 MANPASTPAVPSRGHNCTDLLALGIPSVITAWGXXXXXXXXXXXXXXXXXXXXXQWTRGR 326
MANPASTPAVPSRGHNCTDLLALGIPSVITAWG QWTRGR
Sbjct: 1 MANPASTPAVPSRGHNCTDLLALGIPSVITAWGLWAILAAVTLLLLISLAVHLSQWTRGR 60
Query: 327 SRRHPGLGRSGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEPTPGSSARAAEEVMCYTSL 506
SRRHPGLGRSGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEPTPGSSARAAEEVMCYTSL
Sbjct: 61 SRRHPGLGRSGESVDEVPLYGNLHYLQTGRLSQEQGPDQQEPTPGSSARAAEEVMCYTSL 120
Query: 507 QLRPPQGRIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYAN 686
QLRPPQGRIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYAN
Sbjct: 121 QLRPPQGRIPSPASPIKYSEVVLDSEPEPQASGPEPELYASVCAQTRRARASFPDQAYAN 180
Query: 687 SQPAPS 704
SQPAPS
Sbjct: 181 SQPAPS 186
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,067,876
Number of extensions: 1142204
Number of successful extensions: 5089
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5052
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002965
(1179 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1164 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1164 bits (587), Expect = 0.0
Identities = 672/709 (94%), Gaps = 2/709 (0%)
Strand = Plus / Minus
Query: 473 ggctgcagaagaggtgatgtgctataccagtctgcagctgcggcctcctcagggccggat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097558 ggctgcagaagaggtgatgtgctataccagtctgcagctgcggcctcctcagggccggat 264097499
Query: 533 ccccagccctgcaagccccatcaaatactcagaggtggtgctggactctgagccagagcc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097498 ccccagccctgcaagccccatcaaatactcagaggtggtgctggactctgagccagagcc 264097439
Query: 593 ccaggcttcaggtcctgagccggagctctacgcctcagtgtgtgcccagacccgcagagc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097438 ccaggcttcaggtcctgagccggagctctacgcctcagtgtgtgcccagacccgcagagc 264097379
Query: 653 ccgggcttcctttccagaccaggcctacgccaacagccagcctgcacccagctgagatgg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097378 ccgggcttcctttccagaccaggcctacgccaacagccagcctgcacccagctgagatgg 264097319
Query: 713 agggcctggcacactggggcacgcatctcccccacctcctctgttgcaggggttactgct 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097318 agggcctggcacactggggcacgcatctcccccacctcctctgttgcaggggttactgct 264097259
Query: 773 accctgtctgaggtgtgactgttttccaannnnnnntgaagacaagcagccattgcccag 832
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264097258 accctgtctgaggtgtgactgttttccaaccccccctgaagacaagcagccattgcccag 264097199
Query: 833 tcacannnnnnntgttcccttaacttcttttctgagttgtgaccgacccatctcagagga 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097198 tcacagggggggtgttcccttaacttcttttctgagttgtgaccgacccatctcagagga 264097139
Query: 893 acgccaggcccccagcttcttgacaatggaggaagcaaaggcagtggccccctccccacc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097138 acgccaggcccccagcttcttgacaatggaggaagcaaaggcagtggccccctccccacc 264097079
Query: 953 ccnnnnnnnncatctattcctcccaacccccaaactcccaggttttcagtcctccttccg 1012
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097078 ccttttttttcatctattcctcccaacccccaaactcccaggttttcagtcctccttccg 264097019
Query: 1013 gagtttaatcagatgctccccactccggctgcctcatggtctgtgctgacgcctcagtgt 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097018 gagtttaatcagatgctccccactccggctgcctcatggtctgtgctgacgcctcagtgt 264096959
Query: 1073 ctcctcagccacaggaagtaggcagtnnnnnnnnnnnntagagcctgaaaggatatgtat 1132
|||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 264096958 ctcctcagccacaggaagtaggcagtgggggagggggttagagcctgagaggatatgtat 264096899
Query: 1133 gggtatcctgctcaggat-ccacaggctggagggaa-ccagtgaactga 1179
|||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 264096898 gggtatcctgctcaggatcccacaggctggagggaacccagtgaactga 264096850
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 11 aaaccagcgacttggccaccgccactggtactggagatgctgcgctgtgggggccaggct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264098392 aaaccagcgacttggccaccgccactggtactggagatgctgcgctgtgggggccaggct 264098333
Query: 71 cagggaggggtgggagtaaagggggctgctgcagctgtcaagccataaatcaggctgacc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264098332 cagggaggggtgggagtaaagggggctgctgcagctgtcaagccataaatcaggctgacc 264098273
Query: 131 cttgactctgggcaagatggcaaatccggcttccacaccagcagtcccgagcagaggtca 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264098272 cttgactctgggcaagatggcaaatccggcttccacaccagcagtcccgagcagaggtca 264098213
Query: 191 taactgcacggatctgttagcgcttgg 217
|||||||||||||||||||||||||||
Sbjct: 264098212 taactgcacggatctgttagcgcttgg 264098186
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 216 ggaatcccctctgtgatcacggcctggggactgtgggccatcttagcggctgtgacgctg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264098079 ggaatcccctctgtgatcacggcctggggactgtgggccatcttagcggctgtgacgctg 264098020
Query: 276 ctacttctcatctcgctggctgtgcacttgtcccagtggactagaggccggagcaggagg 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264098019 ctacttctcatctcgctggctgtgcacttgtcccagtggactagaggccggagcaggagg 264097960
Query: 336 catccaggtctgggaaggt 354
|||||||||||||||||||
Sbjct: 264097959 catccaggtctgggaaggt 264097941
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 409 caggacggctgtctcaagaacaagggccagaccaacaggaaccaacacctggaagctctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097700 caggacggctgtctcaagaacaagggccagaccaacaggaaccaacacctggaagctctg 264097641
Query: 469 ccaggg 474
||||||
Sbjct: 264097640 ccaggg 264097635
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 351 aggtctggcgagtctgtggacgaagtccccctgtatgggaacctgcattatctgcagaca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264097868 aggtctggcgagtctgtggacgaagtccccctgtatgggaacctgcattatctgcagaca 264097809
Query: 411 gg 412
||
Sbjct: 264097808 gg 264097807
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,035,053
Number of extensions: 256
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 7
Length of query: 1179
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1158
Effective length of database: 2,808,413,156
Effective search space: 3252142434648
Effective search space used: 3252142434648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)