Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002967
(1440 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001250820.1| PREDICTED: 28S ribosomal protein S18b, mitoc... 488 e-138
Alignment gi|NP_001033613.1| 28S ribosomal protein S18b, mitochondrial [B... 481 e-136
>ref|XP_001250820.1| PREDICTED: 28S ribosomal protein S18b, mitochondrial-like [Bos
taurus].
Length = 258
Score = 488 bits (1257), Expect = e-138
Identities = 227/258 (87%), Positives = 236/258 (91%)
Frame = +2
Query: 374 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 553
MAAS+LNVLLRRLP SPFRGAYGVQV LQTLCTKAPPEDDSLP +P+SPY+DEPWKYLD
Sbjct: 1 MAASVLNVLLRRLPYFSPFRGAYGVQVPLQTLCTKAPPEDDSLPPIPVSPYEDEPWKYLD 60
Query: 554 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 733
SEEY NRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV
Sbjct: 61 SEEYHNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 120
Query: 734 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 913
KLL+QFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL YHIPQVEPRDLDFST+
Sbjct: 121 KLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLSYHIPQVEPRDLDFSTS 180
Query: 914 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXXXXXXXYQGRLREESGPPPELMPEVPL 1093
HGAVS+TPPAPTLVSGDPWYPWYSWKQPP YQG LREESGPPPE MP+VPL
Sbjct: 181 HGAVSATPPAPTLVSGDPWYPWYSWKQPPERELSRLRRLYQGHLREESGPPPESMPKVPL 240
Query: 1094 TAPAEASSTEPGAPQSAL 1147
TAP EA+STE PQSAL
Sbjct: 241 TAPTEATSTEQAGPQSAL 258
>ref|NP_001033613.1| 28S ribosomal protein S18b, mitochondrial [Bos taurus].
Length = 258
Score = 481 bits (1237), Expect = e-136
Identities = 225/258 (87%), Positives = 234/258 (90%)
Frame = +2
Query: 374 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 553
MAAS+LNVLLRRLP SPFRGAYGVQV LQTLCTKAPPEDDSLP + +SPY+DEPWKYLD
Sbjct: 1 MAASVLNVLLRRLPYFSPFRGAYGVQVPLQTLCTKAPPEDDSLPPIHVSPYEDEPWKYLD 60
Query: 554 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 733
SEEY NR GSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV
Sbjct: 61 SEEYHNRNGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 120
Query: 734 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 913
KLL+QFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL YHIPQVEPRDLDFST+
Sbjct: 121 KLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLSYHIPQVEPRDLDFSTS 180
Query: 914 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXXXXXXXYQGRLREESGPPPELMPEVPL 1093
HGAVS+TPPAPTLVSGDPWYPWYSWKQPP YQG LREESGPPPE MP+VPL
Sbjct: 181 HGAVSATPPAPTLVSGDPWYPWYSWKQPPERELSRLRRLYQGHLREESGPPPESMPKVPL 240
Query: 1094 TAPAEASSTEPGAPQSAL 1147
TAP EA+STE PQSAL
Sbjct: 241 TAPNEATSTEQAGPQSAL 258
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,237,626
Number of extensions: 1878997
Number of successful extensions: 6938
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6919
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,174,046
Effective search space: 5301093204
Effective search space used: 5301093204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002967
(1440 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532057.2| PREDICTED: similar to 28S ribosomal protein S18... 461 e-130
Alignment gi|XP_856628.1| PREDICTED: similar to 28S ribosomal protein S18... 294 1e-79
>ref|XP_532057.2| PREDICTED: similar to 28S ribosomal protein S18b, mitochondrial
precursor (MRP-S18-b) (Mrps18b) (MRP-S18-2) isoform 1
[Canis familiaris].
Length = 257
Score = 461 bits (1187), Expect = e-130
Identities = 217/258 (84%), Positives = 229/258 (88%)
Frame = +2
Query: 374 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 553
MAAS L LR LPG+SPFR AYGVQV LQTLCTK PPE+DSLP VPISPYK+EPWKYLD
Sbjct: 1 MAASALRSWLRPLPGLSPFRSAYGVQVPLQTLCTKGPPEEDSLPPVPISPYKNEPWKYLD 60
Query: 554 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 733
SEEYQNRY +RPVWADYRRNHKGGIPPQRTRK CIR +KVAGNPCPICRD KLHVDFRNV
Sbjct: 61 SEEYQNRYSTRPVWADYRRNHKGGIPPQRTRKTCIRRDKVAGNPCPICRDHKLHVDFRNV 120
Query: 734 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 913
KLLEQFVCAHTG+IFHAPYTGVCMKQHKKLTQAIQKARDHGLL YHIPQVEPRDLDFST+
Sbjct: 121 KLLEQFVCAHTGVIFHAPYTGVCMKQHKKLTQAIQKARDHGLLSYHIPQVEPRDLDFSTS 180
Query: 914 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXXXXXXXYQGRLREESGPPPELMPEVPL 1093
HGAVS+TPPAPTLVSGDPWYPWYSWKQPP YQG LREESGPPPE MPEVPL
Sbjct: 181 HGAVSATPPAPTLVSGDPWYPWYSWKQPPERELSRLRRLYQGHLREESGPPPESMPEVPL 240
Query: 1094 TAPAEASSTEPGAPQSAL 1147
++P E+SSTE +PQSAL
Sbjct: 241 SSPTESSSTEE-SPQSAL 257
>ref|XP_856628.1| PREDICTED: similar to 28S ribosomal protein S18b, mitochondrial
precursor (MRP-S18-b) (Mrps18b) (MRP-S18-2) isoform 2
[Canis familiaris].
Length = 170
Score = 294 bits (753), Expect = 1e-79
Identities = 137/164 (83%), Positives = 146/164 (89%)
Frame = +2
Query: 656 IRGNKVAGNPCPICRDQKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAI 835
+R +KVAGNPCPICRD KLHVDFRNVKLLEQFVCAHTG+IFHAPYTGVCMKQHKKLTQAI
Sbjct: 8 VRRDKVAGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGVIFHAPYTGVCMKQHKKLTQAI 67
Query: 836 QKARDHGLLRYHIPQVEPRDLDFSTTHGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXX 1015
QKARDHGLL YHIPQVEPRDLDFST+HGAVS+TPPAPTLVSGDPWYPWYSWKQPP
Sbjct: 68 QKARDHGLLSYHIPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPWYPWYSWKQPPERELS 127
Query: 1016 XXXXXYQGRLREESGPPPELMPEVPLTAPAEASSTEPGAPQSAL 1147
YQG LREESGPPPE MPEVPL++P E+SSTE +PQSAL
Sbjct: 128 RLRRLYQGHLREESGPPPESMPEVPLSSPTESSSTEE-SPQSAL 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,002,048
Number of extensions: 1945598
Number of successful extensions: 7298
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7280
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 373
Effective length of database: 15,307,552
Effective search space: 5709716896
Effective search space used: 5709716896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002967
(1440 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054765.1| 28S ribosomal protein S18b, mitochondrial precu... 445 e-125
Alignment gi|NP_057151.1| 28S ribosomal protein S18c, mitochondrial precu... 52 2e-06
>ref|NP_054765.1| 28S ribosomal protein S18b, mitochondrial precursor [Homo sapiens].
Length = 258
Score = 445 bits (1144), Expect = e-125
Identities = 208/258 (80%), Positives = 225/258 (87%)
Frame = +2
Query: 374 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 553
MAAS+LN +LRRLP +S FRG++ VQV LQTLCTKAP E+DSL VPISPYKDEPWKYL+
Sbjct: 1 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE 60
Query: 554 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 733
SEEYQ RYGSRPVWADYRRNHKGG+PPQRTRK CIR NKV GNPCPICRD KLHVDFRNV
Sbjct: 61 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV 120
Query: 734 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 913
KLLEQFVCAHTGIIF+APYTGVC+KQHK+LTQAIQKARDHGLL YHIPQVEPRDLDFST+
Sbjct: 121 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS 180
Query: 914 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXXXXXXXYQGRLREESGPPPELMPEVPL 1093
HGAVS+TPPAPTLVSGDPWYPWY+WKQPP YQG L+EESGPPPE MP++P
Sbjct: 181 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP 240
Query: 1094 TAPAEASSTEPGAPQSAL 1147
PAEASST PQSAL
Sbjct: 241 RTPAEASSTGQTGPQSAL 258
>ref|NP_057151.1| 28S ribosomal protein S18c, mitochondrial precursor [Homo sapiens].
Length = 142
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +2
Query: 713 HVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL 862
HVD++NV+LL QFV TG I+ TG+C K+ K++T+AI++A+ G +
Sbjct: 71 HVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,574,325
Number of extensions: 1900853
Number of successful extensions: 6868
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6852
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,802,980
Effective search space: 5536314520
Effective search space used: 5536314520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002967
(1440 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080154.1| 28S ribosomal protein S18b, mitochondrial precu... 406 e-113
Alignment gi|NP_081102.1| 28S ribosomal protein S18c, mitochondrial precu... 49 8e-06
Alignment gi|XP_003085170.1| PREDICTED: 28S ribosomal protein S18c, mitoc... 49 8e-06
Alignment gi|XP_003086086.1| PREDICTED: 28S ribosomal protein S18c, mitoc... 49 8e-06
>ref|NP_080154.1| 28S ribosomal protein S18b, mitochondrial precursor [Mus musculus].
Length = 254
Score = 406 bits (1043), Expect = e-113
Identities = 189/257 (73%), Positives = 212/257 (82%)
Frame = +2
Query: 374 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 553
MAA + + LL+ +P + R +Y QV LQTLCT+ PPE+D+ +P+SPY+ EPWKYLD
Sbjct: 1 MAAPLRHTLLKLVPTL--LRSSYVAQVPLQTLCTRGPPEEDAPSSLPVSPYESEPWKYLD 58
Query: 554 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 733
SEEY NRYGSRPVWADYRRNHKGG+PPQRTRK CIR NKVAGNPCPICRD KLHVDFRNV
Sbjct: 59 SEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVAGNPCPICRDHKLHVDFRNV 118
Query: 734 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 913
KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKAR+ GLL Y++PQVEPRD DF T
Sbjct: 119 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDADFGTV 178
Query: 914 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXXXXXXXYQGRLREESGPPPELMPEVPL 1093
HGAVS TPPAPTL+SG+PWYPWYSW+QPP YQG L EESGPPPE MPE+P
Sbjct: 179 HGAVSVTPPAPTLLSGEPWYPWYSWQQPPERELSRLRRLYQGNLLEESGPPPESMPEMPT 238
Query: 1094 TAPAEASSTEPGAPQSA 1144
T PAE+S +PG+ QSA
Sbjct: 239 TPPAESSIEQPGS-QSA 254
>ref|NP_081102.1| 28S ribosomal protein S18c, mitochondrial precursor [Mus musculus].
Length = 143
Score = 49.3 bits (116), Expect = 8e-06
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = +2
Query: 686 CPICRDQKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL 862
C +C + VD++NV+LL QF+ TG I+ TG+C K+ +++T+AI++A+ G +
Sbjct: 66 CVLCEKR---VDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFM 121
>ref|XP_003085170.1| PREDICTED: 28S ribosomal protein S18c, mitochondrial-like [Mus
musculus].
Length = 152
Score = 49.3 bits (116), Expect = 8e-06
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +2
Query: 686 CPICRDQKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL 862
C +C HVD++NV+LL QF+ TG I+ TG+C K+ +++T+A ++ + G +
Sbjct: 75 CVLCEK---HVDYKNVQLLSQFISPFTGCIYRRHITGLCGKKQREITKATKRTQKMGFM 130
>ref|XP_003086086.1| PREDICTED: 28S ribosomal protein S18c, mitochondrial-like [Mus
musculus].
Length = 152
Score = 49.3 bits (116), Expect = 8e-06
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +2
Query: 686 CPICRDQKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL 862
C +C HVD++NV+LL QF+ TG I+ TG+C K+ +++T+A ++ + G +
Sbjct: 75 CVLCEK---HVDYKNVQLLSQFISPFTGCIYRRHITGLCGKKQREITKATKRTQKMGFM 130
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,785,145
Number of extensions: 1577018
Number of successful extensions: 5341
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5332
Number of HSP's successfully gapped: 4
Length of query: 480
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 375
Effective length of database: 12,463,779
Effective search space: 4673917125
Effective search space used: 4673917125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002967
(1440 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116612.1| 28S ribosomal protein S18b, mitochondrial pr... 525 e-149
Alignment gi|XP_003129404.2| PREDICTED: LOW QUALITY PROTEIN: 28S ribosoma... 52 1e-06
>ref|NP_001116612.1| 28S ribosomal protein S18b, mitochondrial precursor [Sus scrofa].
Length = 258
Score = 525 bits (1353), Expect = e-149
Identities = 248/258 (96%), Positives = 248/258 (96%)
Frame = +2
Query: 374 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 553
MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD
Sbjct: 1 MAASILNVLLRRLPGVSPFRGAYGVQVLLQTLCTKAPPEDDSLPQVPISPYKDEPWKYLD 60
Query: 554 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 733
SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV
Sbjct: 61 SEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNV 120
Query: 734 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 913
KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT
Sbjct: 121 KLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 180
Query: 914 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPXXXXXXXXXXYQGRLREESGPPPELMPEVPL 1093
HGAVSSTPPAPTLVSGDPWYPWYSWKQPP YQGRLREESGPPPELMPEVPL
Sbjct: 181 HGAVSSTPPAPTLVSGDPWYPWYSWKQPPERELSRLRRLYQGRLREESGPPPELMPEVPL 240
Query: 1094 TAPAEASSTEPGAPQSAL 1147
TAPAEASSTEPGAPQSAL
Sbjct: 241 TAPAEASSTEPGAPQSAL 258
>ref|XP_003129404.2| PREDICTED: LOW QUALITY PROTEIN: 28S ribosomal protein S18c,
mitochondrial-like [Sus scrofa].
Length = 143
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 686 CPICRDQKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLL 862
C +C HVD++NV+LL QF+ TG I+ TG+C K+ K++T+AI++A+ G +
Sbjct: 66 CILCEK---HVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQKEITKAIKRAQILGFM 121
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,529,539
Number of extensions: 1213387
Number of successful extensions: 4341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4332
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 377
Effective length of database: 8,779,541
Effective search space: 3309886957
Effective search space used: 3309886957
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002967
(1440 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1126 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 854 ggtcttctcaggtaccacattccccaggttgaaccccgggaccttgacttcagtaccact 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842032 ggtcttctcaggtaccacattccccaggttgaaccccgggaccttgacttcagtaccact 26842091
Query: 914 catggagctgtgagttctactccgccagcccccactctggtttcaggtgacccctggtac 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842092 catggagctgtgagttctactccgccagcccccactctggtttcaggtgacccctggtac 26842151
Query: 974 ccatggtacagctggaaacagccaccagagagagagctgtcccgccttcgccggctctat 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842152 ccatggtacagctggaaacagccaccagagagagagctgtcccgccttcgccggctctat 26842211
Query: 1034 cagggccgtcttcgagaagaaagtggccctccacctgagttaatgcccgaggtgcccctt 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842212 cagggccgtcttcgagaagaaagtggccctccacctgagttaatgcccgaggtgcccctt 26842271
Query: 1094 acagccccagctgaagcctcctccactgagcctggggccccgcaaagtgctctgtaggag 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842272 acagccccagctgaagcctcctccactgagcctggggccccgcaaagtgctctgtaggag 26842331
Query: 1154 ctggagaccggggagggagacagggtgtcccttatacaatatttcaccctgaggagctgt 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842332 ctggagaccggggagggagacagggtgtcccttatacaatatttcaccctgaggagctgt 26842391
Query: 1214 gtctcttgtggcagtggcaggcccagggccaaagaaaggaagcggcttttggtgaaaggg 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842392 gtctcttgtggcagtggcaggcccagggccaaagaaaggaagcggcttttggtgaaaggg 26842451
Query: 1274 ataaatacgtctgaggctgggggagggcactgcagatgtgtatgagaaaacccagccttt 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842452 ataaatacgtctgaggctgggggagggcactgcagatgtgtatgagaaaacccagccttt 26842511
Query: 1334 acatattgtaaatagatgtgctaagcattctgttactgtttcaaacctgtgccaactggg 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842512 acatattgtaaatagatgtgctaagcattctgttactgtttcaaacctgtgccaactggg 26842571
Query: 1394 cttttacaaaataaagctgtatcctgtc 1421
||||||||||||||||||||||||||||
Sbjct: 26842572 cttttacaaaataaagctgtatcctgtc 26842599
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 854 ggtcttctcaggtaccacattccccaggttgaaccccgggaccttgacttcagtaccact 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894032 ggtcttctcaggtaccacattccccaggttgaaccccgggaccttgacttcagtaccact 26894091
Query: 914 catggagctgtgagttctactccgccagcccccactctggtttcaggtgacccctggtac 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894092 catggagctgtgagttctactccgccagcccccactctggtttcaggtgacccctggtac 26894151
Query: 974 ccatggtacagctggaaacagccaccagagagagagctgtcccgccttcgccggctctat 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894152 ccatggtacagctggaaacagccaccagagagagagctgtcccgccttcgccggctctat 26894211
Query: 1034 cagggccgtcttcgagaagaaagtggccctccacctgagttaatgcccgaggtgcccctt 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894212 cagggccgtcttcgagaagaaagtggccctccacctgagttaatgcccgaggtgcccctt 26894271
Query: 1094 acagccccagctgaagcctcctccactgagcctggggccccgcaaagtgctctgtaggag 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894272 acagccccagctgaagcctcctccactgagcctggggccccgcaaagtgctctgtaggag 26894331
Query: 1154 ctggagaccggggagggagacagggtgtcccttatacaatatttcaccctgaggagctgt 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894332 ctggagaccggggagggagacagggtgtcccttatacaatatttcaccctgaggagctgt 26894391
Query: 1214 gtctcttgtggcagtggcaggcccagggccaaagaaaggaagcggcttttggtgaaaggg 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894392 gtctcttgtggcagtggcaggcccagggccaaagaaaggaagcggcttttggtgaaaggg 26894451
Query: 1274 ataaatacgtctgaggctgggggagggcactgcagatgtgtatgagaaaacccagccttt 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894452 ataaatacgtctgaggctgggggagggcactgcagatgtgtatgagaaaacccagccttt 26894511
Query: 1334 acatattgtaaatagatgtgctaagcattctgttactgtttcaaacctgtgccaactggg 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26894512 acatattgtaaatagatgtgctaagcattctgttactgtttcaaacctgtgccaactggg 26894571
Query: 1394 cttttacaaaataaagctgtatcctgtc 1421
||||||||||||||||||||||||||||
Sbjct: 26894572 cttttacaaaataaagctgtatcctgtc 26894599
Score = 888 bits (448), Expect = 0.0
Identities = 448/448 (100%)
Strand = Plus / Plus
Query: 6 ctctgcttccaccacttccgccctcgagaccatttctcaccctgggttggtagaatcgga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835555 ctctgcttccaccacttccgccctcgagaccatttctcaccctgggttggtagaatcgga 26835614
Query: 66 ccggcgcatgcgcagtgagagaatctcggtcaaaatctccttcaaaattgcttacaagac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835615 ccggcgcatgcgcagtgagagaatctcggtcaaaatctccttcaaaattgcttacaagac 26835674
Query: 126 aaactcgaagaatgaggtctaagaatcgtagtgactggtgccgcaaaaacgcaattttga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835675 aaactcgaagaatgaggtctaagaatcgtagtgactggtgccgcaaaaacgcaattttga 26835734
Query: 186 ggccgaattcgattgtgacgcagttgaaattgccttctccttatggcccccctttctcgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835735 ggccgaattcgattgtgacgcagttgaaattgccttctccttatggcccccctttctcgt 26835794
Query: 246 ttccgtcttgacgcagatgcgcggccgtcttccgcactgcgggcgcgtccttggccctac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835795 ttccgtcttgacgcagatgcgcggccgtcttccgcactgcgggcgcgtccttggccctac 26835854
Query: 306 ccccagtcagtttccaggtgcatgcgcagtcgcctttctagcctttcctgctttgggcgt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835855 ccccagtcagtttccaggtgcatgcgcagtcgcctttctagcctttcctgctttgggcgt 26835914
Query: 366 acgtcaagatggctgcctccatattgaacgtgttgctgaggcgccttcctggcgtttcgc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26835915 acgtcaagatggctgcctccatattgaacgtgttgctgaggcgccttcctggcgtttcgc 26835974
Query: 426 ccttcagaggtgcctacggagttcaggt 453
||||||||||||||||||||||||||||
Sbjct: 26835975 ccttcagaggtgcctacggagttcaggt 26836002
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 450 aggttctcctccagactctttgcaccaaagctccccctgaggatgattctttgccccagg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26837150 aggttctcctccagactctttgcaccaaagctccccctgaggatgattctttgccccagg 26837209
Query: 510 ttcccatttccccttataaagatgaaccctggaaatatctggactcagaag 560
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26837210 ttcccatttccccttataaagatgaaccctggaaatatctggactcagaag 26837260
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 559 agaataccagaaccgctatggttctcgccctgtctgggctgactaccgtcgcaaccacaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26837366 agaataccagaaccgctatggttctcgccctgtctgggctgactaccgtcgcaaccacaa 26837425
Query: 619 aggtggaatacccccacagcggactcgaaagatgtgtatt 658
||||||||||||||||||||||||||||||||||||||||
Sbjct: 26837426 aggtggaatacccccacagcggactcgaaagatgtgtatt 26837465
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 659 cggggaaataaagttgctgggaatccctgccccatctgccgggatcagaagttgcacgtc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26837593 cggggaaataaagttgctgggaatccctgccccatctgccgggatcagaagttgcacgtc 26837652
Query: 719 gactttagg 727
|||||||||
Sbjct: 26837653 gactttagg 26837661
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 727 gaacgtgaagctcttggagcagtttgtctgcgcccacacgggtatcatcttccatgcccc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26839293 gaacgtgaagctcttggagcagtttgtctgcgcccacacgggtatcatcttccatgcccc 26839352
Query: 787 gtacacagg 795
|||||||||
Sbjct: 26839353 gtacacagg 26839361
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 790 cacaggggtctgtatgaagcaacacaagaagttgacccaggccatccagaaagccaggga 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26841403 cacaggggtctgtatgaagcaacacaagaagttgacccaggccatccagaaagccaggga 26841462
Query: 850 tcatggt 856
|||||||
Sbjct: 26841463 tcatggt 26841469
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 790 cacaggggtctgtatgaagcaacacaagaagttgacccaggccatccagaaagccaggga 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26893403 cacaggggtctgtatgaagcaacacaagaagttgacccaggccatccagaaagccaggga 26893462
Query: 850 tcatggt 856
|||||||
Sbjct: 26893463 tcatggt 26893469
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,442,354
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 9
Length of query: 1440
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1419
Effective length of database: 2,808,413,156
Effective search space: 3985138268364
Effective search space used: 3985138268364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)