Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002975
(1235 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033609.1| COMM domain-containing protein 9 [Bos taurus]. 362 e-100
>ref|NP_001033609.1| COMM domain-containing protein 9 [Bos taurus].
Length = 198
Score = 362 bits (929), Expect = e-100
Identities = 188/198 (94%), Positives = 194/198 (97%)
Frame = +1
Query: 25 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 204
MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSA+GSK LLD+TCSSLSVTQEEAEQL
Sbjct: 1 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSALGSKNLLDVTCSSLSVTQEEAEQL 60
Query: 205 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 384
LQALHRLTR+AVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVS WRAEAQ NQISL
Sbjct: 61 LQALHRLTRLAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSAWRAEAQVNQISL 120
Query: 385 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 564
PRLVDLDWRVDIKTSSDSISR+AVPTCLLQMKIQEDPSLCGD+PSVS VTVELSKETLDT
Sbjct: 121 PRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDRPSVSDVTVELSKETLDT 180
Query: 565 MLDGLGRIRDQLSAVANK 618
MLDGLGRIRDQLSAVA+K
Sbjct: 181 MLDGLGRIRDQLSAVASK 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,177,270
Number of extensions: 1741239
Number of successful extensions: 9470
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9357
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,207,134
Effective search space: 4347383004
Effective search space used: 4347383004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002975
(1235 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850727.1| PREDICTED: similar to COMM domain containing pr... 362 e-100
>ref|XP_850727.1| PREDICTED: similar to COMM domain containing protein 9 [Canis
familiaris].
Length = 198
Score = 362 bits (930), Expect = e-100
Identities = 187/198 (94%), Positives = 194/198 (97%)
Frame = +1
Query: 25 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 204
MAALTAE FAALQSLLKASSKDVVRQLCQESF SSA+GS+KLLD+TCSSLSVTQEEAEQL
Sbjct: 1 MAALTAEGFAALQSLLKASSKDVVRQLCQESFPSSALGSEKLLDMTCSSLSVTQEEAEQL 60
Query: 205 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 384
LQALHRLTR+ VFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWR EAQANQISL
Sbjct: 61 LQALHRLTRLVVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISL 120
Query: 385 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 564
PRLVDLDWRVD+KTSSDSISR+AVPTCLLQMKIQEDPSLCGDKPS+SAVTVELSKETLDT
Sbjct: 121 PRLVDLDWRVDVKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDT 180
Query: 565 MLDGLGRIRDQLSAVANK 618
MLDGLGRIRDQLSAVANK
Sbjct: 181 MLDGLGRIRDQLSAVANK 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,439,020
Number of extensions: 1794290
Number of successful extensions: 9180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9110
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 306
Effective length of database: 15,374,224
Effective search space: 4704512544
Effective search space used: 4704512544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002975
(1235 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054905.2| COMM domain-containing protein 9 isoform 1 [Hom... 360 1e-99
Alignment gi|NP_001095123.1| COMM domain-containing protein 9 isoform 2 [... 268 8e-72
>ref|NP_054905.2| COMM domain-containing protein 9 isoform 1 [Homo sapiens].
Length = 198
Score = 360 bits (925), Expect = 1e-99
Identities = 186/198 (93%), Positives = 194/198 (97%)
Frame = +1
Query: 25 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 204
MAALTAE+FAALQSLLKASSKDVVRQLCQESFSSSA+G KKLLD+TCSSLSVTQEEAE+L
Sbjct: 1 MAALTAEHFAALQSLLKASSKDVVRQLCQESFSSSALGLKKLLDVTCSSLSVTQEEAEEL 60
Query: 205 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 384
LQALHRLTR+ FRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWR EAQANQISL
Sbjct: 61 LQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISL 120
Query: 385 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 564
PRLVDLDWRVDIKTSSDSISR+AVPTCLLQMKIQEDPSLCGDKPS+SAVTVELSKETLDT
Sbjct: 121 PRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDT 180
Query: 565 MLDGLGRIRDQLSAVANK 618
MLDGLGRIRDQLSAVA+K
Sbjct: 181 MLDGLGRIRDQLSAVASK 198
>ref|NP_001095123.1| COMM domain-containing protein 9 isoform 2 [Homo sapiens].
Length = 156
Score = 268 bits (685), Expect = 8e-72
Identities = 148/198 (74%), Positives = 153/198 (77%)
Frame = +1
Query: 25 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 204
MAALTAE+FAALQSLLK L
Sbjct: 1 MAALTAEHFAALQSLLK------------------------------------------L 18
Query: 205 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 384
LQALHRLTR+ FRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWR EAQANQISL
Sbjct: 19 LQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISL 78
Query: 385 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 564
PRLVDLDWRVDIKTSSDSISR+AVPTCLLQMKIQEDPSLCGDKPS+SAVTVELSKETLDT
Sbjct: 79 PRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDT 138
Query: 565 MLDGLGRIRDQLSAVANK 618
MLDGLGRIRDQLSAVA+K
Sbjct: 139 MLDGLGRIRDQLSAVASK 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,264,735
Number of extensions: 1742906
Number of successful extensions: 8937
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8851
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,835,944
Effective search space: 4539798864
Effective search space used: 4539798864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002975
(1235 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083911.1| COMM domain-containing protein 9 [Mus musculus]. 340 2e-93
>ref|NP_083911.1| COMM domain-containing protein 9 [Mus musculus].
Length = 198
Score = 340 bits (871), Expect = 2e-93
Identities = 175/198 (88%), Positives = 186/198 (93%)
Frame = +1
Query: 25 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 204
MAALTAE+F ALQSLLKASSKDVVRQLCQESFSSS + S+ LLD TCSSLSV Q EA QL
Sbjct: 1 MAALTAEHFVALQSLLKASSKDVVRQLCQESFSSSCLDSESLLDKTCSSLSVPQGEAAQL 60
Query: 205 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 384
LQALH TR+ FRDLSSAEAILALFPENFHQNLKNLLTKII+EH+STWRAEAQANQISL
Sbjct: 61 LQALHHFTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIIVEHISTWRAEAQANQISL 120
Query: 385 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 564
PRLVDLDWRVDIKTSSD+ISR+AVPTCLLQMKIQEDPSLCG+KPS+SAVT+ELSKETLDT
Sbjct: 121 PRLVDLDWRVDIKTSSDNISRMAVPTCLLQMKIQEDPSLCGEKPSISAVTMELSKETLDT 180
Query: 565 MLDGLGRIRDQLSAVANK 618
MLDGLGRIRDQLSAVANK
Sbjct: 181 MLDGLGRIRDQLSAVANK 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,494,813
Number of extensions: 1433977
Number of successful extensions: 7126
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7038
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 307
Effective length of database: 12,493,815
Effective search space: 3835601205
Effective search space used: 3835601205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002975
(1235 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122911.1| PREDICTED: COMM domain-containing protein 9-... 376 e-104
>ref|XP_003122911.1| PREDICTED: COMM domain-containing protein 9-like [Sus scrofa].
Length = 198
Score = 376 bits (966), Expect = e-104
Identities = 198/198 (100%), Positives = 198/198 (100%)
Frame = +1
Query: 25 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 204
MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL
Sbjct: 1 MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQL 60
Query: 205 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 384
LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL
Sbjct: 61 LQALHRLTRVAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISL 120
Query: 385 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 564
PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT
Sbjct: 121 PRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDT 180
Query: 565 MLDGLGRIRDQLSAVANK 618
MLDGLGRIRDQLSAVANK
Sbjct: 181 MLDGLGRIRDQLSAVANK 198
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,038,062
Number of extensions: 1129405
Number of successful extensions: 6200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6156
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,829,335
Effective search space: 2737093850
Effective search space used: 2737093850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002975
(1235 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1463 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1463 bits (738), Expect = 0.0
Identities = 741/742 (99%)
Strand = Plus / Plus
Query: 479 agatccaggaagaccccagtctgtgtggggacaagccctctgtgtcagctgtcaccgtgg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27137961 agatccaggaagaccccagtctgtgtggggacaagccctctgtgtcagctgtcaccgtgg 27138020
Query: 539 agctgagtaaggagacgctggacaccatgctggatgggctgggccgcatccgagaccagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138021 agctgagtaaggagacgctggacaccatgctggatgggctgggccgcatccgagaccagc 27138080
Query: 599 tttctgccgtggccaacaagtgagccactgcccggttgctcctgggcacccacctcccag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138081 tttctgccgtggccaacaagtgagccactgcccggttgctcctgggcacccacctcccag 27138140
Query: 659 cacatggtagccaccgccacaggcaccagtggggacaaaggaggctgccacccagacggc 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27138141 cacatggtagccaccgccacaggcaccagtggggacaaaggaggctgccacccagaaggc 27138200
Query: 719 acagtcggaccagaggcagccaggcccctacatggatgttctcactttttccccctcttc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138201 acagtcggaccagaggcagccaggcccctacatggatgttctcactttttccccctcttc 27138260
Query: 779 ccgaagttggtgagcataagctgctctcctcccagggccctgtgtggtacctgactccca 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138261 ccgaagttggtgagcataagctgctctcctcccagggccctgtgtggtacctgactccca 27138320
Query: 839 gcatggcggggagaaggaccttgcttggtcagctgcctctggctggctgattggaaaatt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138321 gcatggcggggagaaggaccttgcttggtcagctgcctctggctggctgattggaaaatt 27138380
Query: 899 caggcccaaattgtggagctcgtttccagctctgaagacctctggggagtcaggtggctg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138381 caggcccaaattgtggagctcgtttccagctctgaagacctctggggagtcaggtggctg 27138440
Query: 959 atgccagcctgcttctctatcagcgaagccaggcagatcccgcagggcagggccactcaa 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138441 atgccagcctgcttctctatcagcgaagccaggcagatcccgcagggcagggccactcaa 27138500
Query: 1019 acttacctgctgcagcgtgcccgtcccaccctggtccccagccttcgcgctccctcatcc 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138501 acttacctgctgcagcgtgcccgtcccaccctggtccccagccttcgcgctccctcatcc 27138560
Query: 1079 cggctgcgccaccctgcggcgtaggaagtctcacgtgggagctgatccccttcttcatgg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138561 cggctgcgccaccctgcggcgtaggaagtctcacgtgggagctgatccccttcttcatgg 27138620
Query: 1139 agccagagggcccttcctgggtgtaaggcagccagtcagggtgaagaagtgggagtgact 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27138621 agccagagggcccttcctgggtgtaaggcagccagtcagggtgaagaagtgggagtgact 27138680
Query: 1199 ggaaataaacaacggttctaac 1220
||||||||||||||||||||||
Sbjct: 27138681 ggaaataaacaacggttctaac 27138702
Score = 274 bits (138), Expect = 1e-70
Identities = 141/142 (99%)
Strand = Plus / Plus
Query: 202 ctgctccaggctctgcaccgcctcaccagggtggcagtcttccgagacctgtcctctgcc 261
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 27133998 ctgctccaggctctgcaccgcctcactagggtggcagtcttccgagacctgtcctctgcc 27134057
Query: 262 gaggcgattctggcactctttcctgaaaatttccaccagaacctcaaaaacctgctgaca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27134058 gaggcgattctggcactctttcctgaaaatttccaccagaacctcaaaaacctgctgaca 27134117
Query: 322 aaaatcatcctggaacacgtgt 343
||||||||||||||||||||||
Sbjct: 27134118 aaaatcatcctggaacacgtgt 27134139
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 74 aggcctcctcaaaagatgttgtcagacagctgtgccaagagagcttttccagttcagccg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27132212 aggcctcctcaaaagatgttgtcagacagctgtgccaagagagcttttccagttcagccg 27132271
Query: 134 ttggctcgaaaaaactcttggatataacgtgttccagcttgtccgtgacccaggaggagg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27132272 ttggctcgaaaaaactcttggatataacgtgttccagcttgtccgtgacccaggaggagg 27132331
Query: 194 cagaacaa 201
||||||||
Sbjct: 27132332 cagaacaa 27132339
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 377 tctctctgccgcgcctggtcgacctggactggagggtggacatcaagacctcctcagaca 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27135813 tctctctgccgcgcctggtcgacctggactggagggtggacatcaagacctcctcagaca 27135872
Query: 437 gcatcagccgcctggccgtgcccacctgcctgctccagatgaag 480
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27135873 gcatcagccgcctggccgtgcccacctgcctgctccagatgaag 27135916
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 cgtcggtcacgtgactcggggaagatggccgcgctaacagcggagaactttgcggctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27119410 cgtcggtcacgtgactcggggaagatggccgcgctaacagcggagaactttgcggctctc 27119469
Query: 61 cagagcctgttgaagg 76
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Sbjct: 27119470 cagagcctgttgaagg 27119485
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 342 gtctacttggagagctgaagcccaagcaaatcaga 376
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Sbjct: 27134708 gtctacttggagagctgaagcccaagcaaatcaga 27134742
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,450,829
Number of extensions: 251
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 6
Length of query: 1235
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1214
Effective length of database: 2,808,413,156
Effective search space: 3409413571384
Effective search space used: 3409413571384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)