Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002976
(1562 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069819.1| ketohexokinase [Bos taurus]. 561 e-160
>ref|NP_001069819.1| ketohexokinase [Bos taurus].
Length = 343
Score = 561 bits (1446), Expect = e-160
Identities = 286/343 (83%), Positives = 292/343 (85%), Gaps = 45/343 (13%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLDIINV+DKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEEKQILCVGLVVLDIINVMDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADF---------------------------------------------LVAD 710
GSLA GHVADF LVAD
Sbjct: 61 GSLARGHVADFVLDDLRRYSVDLRYMVFQTTGSVPISTVIISEASGSRTILHAYSFLVAD 120
Query: 711 FGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDVSAKDFEKVDLTRFKW 890
F QRGVDVSQVAWQS GETPCSCCI+N+SNGSRTIVLYDTNLPDVSAKDFEKV+LTRFKW
Sbjct: 121 FRQRGVDVSQVAWQSRGETPCSCCIINNSNGSRTIVLYDTNLPDVSAKDFEKVELTRFKW 180
Query: 891 IHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELYQLFGYGDVVFVSKDV 1070
IHIEGRNASEQVKMLQRIEQHNARQPPE KIQVSVEVEKPREELYQLFGYGDVVFVSKDV
Sbjct: 181 IHIEGRNASEQVKMLQRIEQHNARQPPESKIQVSVEVEKPREELYQLFGYGDVVFVSKDV 240
Query: 1071 AKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLLHSNAFPPPRVVDTLG 1250
AKHFGFRSA EALRGLY RVRKGATLVCAWAEEGADALGPDGRLLHS+AFPPPRVVDTLG
Sbjct: 241 AKHFGFRSAKEALRGLYSRVRKGATLVCAWAEEGADALGPDGRLLHSDAFPPPRVVDTLG 300
Query: 1251 AGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
AGDTFNA+VIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 301 AGDTFNAAVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 343
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,584,326
Number of extensions: 2074575
Number of successful extensions: 13549
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13472
Number of HSP's successfully gapped: 2
Length of query: 520
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,140,958
Effective search space: 5840215654
Effective search space used: 5840215654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002976
(1562 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532903.2| PREDICTED: similar to EMILIN 1 precursor (Elast... 553 e-157
Alignment gi|NP_001182084.1| ketohexokinase (fructokinase) [Canis lupus f... 546 e-155
>ref|XP_532903.2| PREDICTED: similar to EMILIN 1 precursor (Elastin microfibril
interface-located protein 1) (Elastin microfibril
interfacer 1) [Canis familiaris].
Length = 1296
Score = 553 bits (1424), Expect = e-157
Identities = 276/318 (86%), Positives = 292/318 (91%), Gaps = 2/318 (0%)
Frame = +3
Query: 432 PGRKPVSRASRESSGSGLMEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGN 611
PG +R + E SGS ME+KQILCVGLVVLDII+VVDKYPEEDTDSRCLSQRWQRGGN
Sbjct: 980 PGGAQSARRA-EGSGSSPMEDKQILCVGLVVLDIISVVDKYPEEDTDSRCLSQRWQRGGN 1038
Query: 612 ASNSCTVLSLLGAPCAFMGSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVN 791
ASNSCTVLSLLGAPCAFMGS+APGHVADFLVADF QRGVDVSQVAWQ GETPCSCCIVN
Sbjct: 1039 ASNSCTVLSLLGAPCAFMGSMAPGHVADFLVADFRQRGVDVSQVAWQGKGETPCSCCIVN 1098
Query: 792 SSNGSRTIVLYDTNLPDVSAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPP 971
+SNGSRTIVLYDTNLPDVSA DF+ VDLTRFKWIHIEGRNASEQVKMLQRIE+HNA QPP
Sbjct: 1099 NSNGSRTIVLYDTNLPDVSATDFDNVDLTRFKWIHIEGRNASEQVKMLQRIERHNATQPP 1158
Query: 972 EQKIQVSVEVEKPREELYQLFG--YGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGAT 1145
QKIQVSVEVEKPREEL+ + VFVSKDVA+H G+RSAVEALRGLYGRVRKGAT
Sbjct: 1159 GQKIQVSVEVEKPREELFSCLPPFHCPQVFVSKDVARHLGYRSAVEALRGLYGRVRKGAT 1218
Query: 1146 LVCAWAEEGADALGPDGRLLHSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRF 1325
L+CAWAEEGADALGPDGRLLHS+AFPPPRVVDTLGAGDTFNASVIFSLSQGK+MQEALRF
Sbjct: 1219 LICAWAEEGADALGPDGRLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGKTMQEALRF 1278
Query: 1326 GCQVAGKKCGLQGFDGIV 1379
GCQVAGKKCGLQGF+GIV
Sbjct: 1279 GCQVAGKKCGLQGFEGIV 1296
>ref|NP_001182084.1| ketohexokinase (fructokinase) [Canis lupus familiaris].
Length = 300
Score = 546 bits (1407), Expect = e-155
Identities = 269/300 (89%), Positives = 283/300 (94%), Gaps = 2/300 (0%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
ME+KQILCVGLVVLDII+VVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEDKQILCVGLVVLDIISVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 845
GS+APGHVADFLVADF QRGVDVSQVAWQ GETPCSCCIVN+SNGSRTIVLYDTNLPDV
Sbjct: 61 GSMAPGHVADFLVADFRQRGVDVSQVAWQGKGETPCSCCIVNNSNGSRTIVLYDTNLPDV 120
Query: 846 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 1025
SA DF+ VDLTRFKWIHIEGRNASEQVKMLQRIE+HNA QPP QKIQVSVEVEKPREEL+
Sbjct: 121 SATDFDNVDLTRFKWIHIEGRNASEQVKMLQRIERHNATQPPGQKIQVSVEVEKPREELF 180
Query: 1026 QLFG--YGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGR 1199
+ VFVSKDVA+H G+RSAVEALRGLYGRVRKGATL+CAWAEEGADALGPDGR
Sbjct: 181 SCLPPFHCPQVFVSKDVARHLGYRSAVEALRGLYGRVRKGATLICAWAEEGADALGPDGR 240
Query: 1200 LLHSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
LLHS+AFPPPRVVDTLGAGDTFNASVIFSLSQGK+MQEALRFGCQVAGKKCGLQGF+GIV
Sbjct: 241 LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGKTMQEALRFGCQVAGKKCGLQGFEGIV 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,229,527
Number of extensions: 2125670
Number of successful extensions: 14048
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13974
Number of HSP's successfully gapped: 2
Length of query: 520
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 413
Effective length of database: 15,307,552
Effective search space: 6322018976
Effective search space used: 6322018976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002976
(1562 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006479.1| ketohexokinase isoform b [Homo sapiens]. 550 e-156
Alignment gi|NP_000212.1| ketohexokinase isoform a [Homo sapiens]. 508 e-144
>ref|NP_006479.1| ketohexokinase isoform b [Homo sapiens].
Length = 298
Score = 550 bits (1418), Expect = e-156
Identities = 265/298 (88%), Positives = 288/298 (96%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLD+I++VDKYP+ED++ RCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 845
GS+APGHVADFLVADF +RGVDVSQVAWQS G+TP SCCI+N+SNG+RTIVL+DT+LPDV
Sbjct: 61 GSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIINNSNGNRTIVLHDTSLPDV 120
Query: 846 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 1025
SA DFEKVDLT+FKWIHIEGRNASEQVKMLQRI+ HN RQPPEQKI+VSVEVEKPREEL+
Sbjct: 121 SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELF 180
Query: 1026 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 1205
QLFGYGDVVFVSKDVAKH GF+SA EALRGLYGRVRKGA LVCAWAEEGADALGPDG+LL
Sbjct: 181 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLL 240
Query: 1206 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
HS+AFPPPRVVDTLGAGDTFNASVIFSLSQG+S+QEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 241 HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 298
>ref|NP_000212.1| ketohexokinase isoform a [Homo sapiens].
Length = 298
Score = 508 bits (1308), Expect = e-144
Identities = 245/298 (82%), Positives = 274/298 (91%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLD+I++VDKYP+ED++ RCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 845
GS+APGHVADF++ D + VD+ +Q++G P + I+N ++GSRTI+ YD +LPDV
Sbjct: 61 GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDV 120
Query: 846 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 1025
SA DFEKVDLT+FKWIHIEGRNASEQVKMLQRI+ HN RQPPEQKI+VSVEVEKPREEL+
Sbjct: 121 SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELF 180
Query: 1026 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 1205
QLFGYGDVVFVSKDVAKH GF+SA EALRGLYGRVRKGA LVCAWAEEGADALGPDG+LL
Sbjct: 181 QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLL 240
Query: 1206 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
HS+AFPPPRVVDTLGAGDTFNASVIFSLSQG+S+QEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 241 HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,690,606
Number of extensions: 2062194
Number of successful extensions: 12807
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12731
Number of HSP's successfully gapped: 2
Length of query: 520
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,770,016
Effective search space: 6100016608
Effective search space used: 6100016608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002976
(1562 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032465.2| ketohexokinase [Mus musculus]. 560 e-160
>ref|NP_032465.2| ketohexokinase [Mus musculus].
Length = 298
Score = 560 bits (1444), Expect = e-160
Identities = 272/298 (91%), Positives = 287/298 (96%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLDIINVVDKYPEEDTD RCLSQRWQRGGNASNSCTVLSLLGA CAFM
Sbjct: 1 MEEKQILCVGLVVLDIINVVDKYPEEDTDRRCLSQRWQRGGNASNSCTVLSLLGARCAFM 60
Query: 666 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 845
GSLAPGHVADFLVADF QRGVDVSQV WQS G+TPCSCCIVN+SNGSRTI+LYDTNLPDV
Sbjct: 61 GSLAPGHVADFLVADFRQRGVDVSQVTWQSQGDTPCSCCIVNNSNGSRTIILYDTNLPDV 120
Query: 846 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 1025
SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIE+HNA+QP QK++VSVE+EKPREEL+
Sbjct: 121 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEEHNAKQPLPQKVRVSVEIEKPREELF 180
Query: 1026 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 1205
QLF YG+VVFVSKDVAKH GF+SAVEALRGLY RV+KGATLVCAWAEEGADALGPDG+LL
Sbjct: 181 QLFSYGEVVFVSKDVAKHLGFQSAVEALRGLYSRVKKGATLVCAWAEEGADALGPDGQLL 240
Query: 1206 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
HS+AFPPPRVVDTLGAGDTFNASVIFSLS+G SMQEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 241 HSDAFPPPRVVDTLGAGDTFNASVIFSLSKGNSMQEALRFGCQVAGKKCGLQGFDGIV 298
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,958,803
Number of extensions: 1678863
Number of successful extensions: 9658
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9613
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 414
Effective length of database: 12,433,743
Effective search space: 5147569602
Effective search space used: 5147569602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002976
(1562 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125348.1| PREDICTED: ketohexokinase-like isoform 1 [Su... 605 e-173
Alignment gi|XP_003125350.1| PREDICTED: ketohexokinase-like isoform 3 [Su... 583 e-167
Alignment gi|XP_003125349.1| PREDICTED: ketohexokinase-like isoform 2 [Su... 546 e-155
>ref|XP_003125348.1| PREDICTED: ketohexokinase-like isoform 1 [Sus scrofa].
Length = 298
Score = 605 bits (1560), Expect = e-173
Identities = 298/298 (100%), Positives = 298/298 (100%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 845
GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV
Sbjct: 61 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 120
Query: 846 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 1025
SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY
Sbjct: 121 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 180
Query: 1026 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 1205
QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL
Sbjct: 181 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 240
Query: 1206 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 241 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 298
>ref|XP_003125350.1| PREDICTED: ketohexokinase-like isoform 3 [Sus scrofa].
Length = 343
Score = 583 bits (1504), Expect = e-167
Identities = 298/343 (86%), Positives = 298/343 (86%), Gaps = 45/343 (13%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADF---------------------------------------------LVAD 710
GSLAPGHVADF LVAD
Sbjct: 61 GSLAPGHVADFVLDDFGRYSVDLCYVVLQSTGSVPISTVVVSEASGSRTILHAHSFLVAD 120
Query: 711 FGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDVSAKDFEKVDLTRFKW 890
FGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDVSAKDFEKVDLTRFKW
Sbjct: 121 FGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDVSAKDFEKVDLTRFKW 180
Query: 891 IHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELYQLFGYGDVVFVSKDV 1070
IHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELYQLFGYGDVVFVSKDV
Sbjct: 181 IHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELYQLFGYGDVVFVSKDV 240
Query: 1071 AKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLLHSNAFPPPRVVDTLG 1250
AKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLLHSNAFPPPRVVDTLG
Sbjct: 241 AKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLLHSNAFPPPRVVDTLG 300
Query: 1251 AGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
AGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 301 AGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 343
>ref|XP_003125349.1| PREDICTED: ketohexokinase-like isoform 2 [Sus scrofa].
Length = 298
Score = 546 bits (1407), Expect = e-155
Identities = 271/298 (90%), Positives = 281/298 (94%)
Frame = +3
Query: 486 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 665
MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM
Sbjct: 1 MEEKQILCVGLVVLDIINVVDKYPEEDTDSRCLSQRWQRGGNASNSCTVLSLLGAPCAFM 60
Query: 666 GSLAPGHVADFLVADFGQRGVDVSQVAWQSSGETPCSCCIVNSSNGSRTIVLYDTNLPDV 845
GSLAPGHVADF++ DFG+ VD+ V QS+G P S +V+ ++GSRTI+ NLPDV
Sbjct: 61 GSLAPGHVADFVLDDFGRYSVDLCYVVLQSTGSVPISTVVVSEASGSRTILHAHRNLPDV 120
Query: 846 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 1025
SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY
Sbjct: 121 SAKDFEKVDLTRFKWIHIEGRNASEQVKMLQRIEQHNARQPPEQKIQVSVEVEKPREELY 180
Query: 1026 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 1205
QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL
Sbjct: 181 QLFGYGDVVFVSKDVAKHFGFRSAVEALRGLYGRVRKGATLVCAWAEEGADALGPDGRLL 240
Query: 1206 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 1379
HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV
Sbjct: 241 HSNAFPPPRVVDTLGAGDTFNASVIFSLSQGKSMQEALRFGCQVAGKKCGLQGFDGIV 298
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,865,050
Number of extensions: 1347902
Number of successful extensions: 8893
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8856
Number of HSP's successfully gapped: 4
Length of query: 520
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,779,541
Effective search space: 3661068597
Effective search space used: 3661068597
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002976
(1562 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 666 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Minus
Query: 1 tcgggccgtagctgcgaggccctgcttcacgccgcccgtctaggtgctgggaggcagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119030127 tcgggccgtagctgcgaggccctgcttcacgccgcccgtctaggtgctgggaggcagggc 119030068
Query: 61 aagggatgcctttctgctgccactttgtcttggcattcaagagggtgcccagccgcgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119030067 aagggatgcctttctgctgccactttgtcttggcattcaagagggtgcccagccgcgctt 119030008
Query: 121 tagagagatttgtggtagctcggagtccgtcggacaaatgaggaaactgagggcgagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119030007 tagagagatttgtggtagctcggagtccgtcggacaaatgaggaaactgagggcgagaag 119029948
Query: 181 tgggaagcggagccatctcctgggccgcgcagcctgctgagcgaaagccggggaccaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119029947 tgggaagcggagccatctcctgggccgcgcagcctgctgagcgaaagccggggaccaaga 119029888
Query: 241 cctcggggtctgcgctcccaggcccgctggggtcggtgggtgtggggggcaggagcccgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119029887 cctcggggtctgcgctcccaggcccgctggggtcggtgggtgtggggggcaggagcccgg 119029828
Query: 301 ctccgtcccctgcaccccactgcacccctcgccgcc 336
||||||||||||||||||||||||||||||||||||
Sbjct: 119029827 ctccgtcccctgcaccccactgcacccctcgccgcc 119029792
Score = 490 bits (247), Expect = e-135
Identities = 253/255 (99%)
Strand = Plus / Minus
Query: 1296 gggaagagcatgcaggaggcgctgaggttcggctgccaggtggccggcaagaagtgcggt 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119019973 gggaagagcatgcaggaggcgctgaggttcggctgccaggtggccggcaagaagtgcggt 119019914
Query: 1356 ctgcagggcttcgatggcatcgtgtgagcaccctgggctggcatccctggctgccggtgc 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119019913 ctgcagggcttcgatggcatcgtgtgagcaccctgggctggcatccctggctgccggtgc 119019854
Query: 1416 cttctcccctccgggcagccaggcatggggctgccctgctccctggacagatgcaggctg 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119019853 cttctcccctccgggcagccaggcatggggctgccctgctccctggacagatgcaggctg 119019794
Query: 1476 cgggagggtgccacctgtgagctggcgtctcacgtggcagagctgcagagcaaataaacc 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119019793 cgggagggtgccacctgtgagctggcgtctcacgtggcagagctgcagagcaaataaacc 119019734
Query: 1536 tcccttcccagagcc 1550
||| | |||||||||
Sbjct: 119019733 tccttccccagagcc 119019719
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 387 cagcccctgcgagcgggacacgatcctccaagataagaggccgagcccgggaggaagccc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119029741 cagcccctgcgagcgggacacgatcctccaagataagaggccgagcccgggaggaagccc 119029682
Query: 447 gtcagccgggccagccgagaaagctccgggagcggcctcatggaagagaagcagatcctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119029681 gtcagccgggccagccgagaaagctccgggagcggcctcatggaagagaagcagatcctg 119029622
Query: 507 tgcgtggggctagtggtgctggacatcatcaatgtggtggacaagtacccggaggaggac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119029621 tgcgtggggctagtggtgctggacatcatcaatgtggtggacaagtacccggaggaggac 119029562
Query: 567 acggacagcaggt 579
|||||||||||||
Sbjct: 119029561 acggacagcaggt 119029549
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 1138 gggctacgcttgtctgtgcctgggccgaggagggcgccgatgccctgggccctgatggac 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119020216 gggctacgcttgtctgtgcctgggccgaggagggcgccgatgccctgggccctgatggac 119020157
Query: 1198 ggctgctccactccaacgctttcccgccgccccgggtggtggacactctgggggccgggg 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119020156 ggctgctccactccaacgctttcccgccgccccgggtggtggacactctgggggccgggg 119020097
Query: 1258 acaccttcaacgcttcagtcatcttcagcctctcccaggg 1297
||||||||||||||||||||||||||||||||||||||||
Sbjct: 119020096 acaccttcaacgcttcagtcatcttcagcctctcccaggg 119020057
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 901 agggccggaacgcttcagagcaggtgaagatgctgcagcggatagagcaacacaatgcca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119021641 agggccggaacgcttcagagcaggtgaagatgctgcagcggatagagcaacacaatgcca 119021582
Query: 961 ggcagcctccggagcagaagatccaggtgtccgtggaggtggagaagccgcgagaggagc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119021581 ggcagcctccggagcagaagatccaggtgtccgtggaggtggagaagccgcgagaggagc 119021522
Query: 1021 tgtaccagctctttggctacggggatgtggt 1051
|||||||||||||||||||||||||||||||
Sbjct: 119021521 tgtaccagctctttggctacggggatgtggt 119021491
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 695 cttcctggtggctgacttcgggcagcggggtgtggacgtgtctcaggtggcctggcagag 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119024569 cttcctggtggctgacttcgggcagcggggtgtggacgtgtctcaggtggcctggcagag 119024510
Query: 755 cagtggggagaccccgtgctcttgctgcatcgtcaacagctccaatggctcccgtaccat 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119024509 cagtggggagaccccgtgctcttgctgcatcgtcaacagctccaatggctcccgtaccat 119024450
Query: 815 tgtgctctacgacacg 830
||||||||||||||||
Sbjct: 119024449 tgtgctctacgacacg 119024434
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 574 gcaggtgtttgtcgcagaggtggcagcgtggaggcaacgcttccaactcctgcacggttc 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119026970 gcaggtgtttgtcgcagaggtggcagcgtggaggcaacgcttccaactcctgcacggttc 119026911
Query: 634 tctccctgctcggagccccctgtgccttcatgggctcgctggccccgggccacgttgccg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119026910 tctccctgctcggagccccctgtgccttcatgggctcgctggccccgggccacgttgccg 119026851
Query: 694 a 694
|
Sbjct: 119026850 a 119026850
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1049 ggtgtttgtcagcaaagatgtggccaagcacttcgggttccggtctgcggtggaggccct 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119020461 ggtgtttgtcagcaaagatgtggccaagcacttcgggttccggtctgcggtggaggccct 119020402
Query: 1109 caggggcctgtatgggcgcgtgaggaagggg 1139
|||||||||||||||||||||||||||||||
Sbjct: 119020401 caggggcctgtatgggcgcgtgaggaagggg 119020371
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 830 gaacctgcccgatgtgtctgctaaagactttgagaaggtcgatctgacccggttcaagtg 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119022684 gaacctgcccgatgtgtctgctaaagactttgagaaggtcgatctgacccggttcaagtg 119022625
Query: 890 gatccacattgagg 903
||||||||||||||
Sbjct: 119022624 gatccacattgagg 119022611
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,183,972
Number of extensions: 565
Number of successful extensions: 565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 9
Length of query: 1562
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1541
Effective length of database: 2,808,413,156
Effective search space: 4327764673396
Effective search space used: 4327764673396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)