Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002987
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 ... 230 2e-60
Alignment gi|XP_002694217.1| PREDICTED: chromodomain helicase DNA binding... 124 1e-28
Alignment gi|XP_609360.4| PREDICTED: chromodomain helicase DNA binding pr... 124 1e-28
>ref|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 [Bos taurus].
Length = 1912
Score = 230 bits (586), Expect = 2e-60
Identities = 130/223 (58%), Positives = 132/223 (59%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEE+DMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEDDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKER+LLCRQLGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 121 GPKKEKKSKSKRKEEEEEDEDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 180
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 223
>ref|XP_002694217.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos
taurus].
Length = 2099
Score = 124 bits (312), Expect = 1e-28
Identities = 62/121 (51%), Positives = 74/121 (61%)
Frame = +2
Query: 491 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 670
+S+SEGSDY+P QL+ +WG++
Sbjct: 173 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDEEDDNEDGCLKEPKSSGQLMAEWGLD 232
Query: 671 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 850
D+D++FSE DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 233 DVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 292
Query: 851 S 853
S
Sbjct: 293 S 293
>ref|XP_609360.4| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos
taurus].
Length = 2048
Score = 124 bits (312), Expect = 1e-28
Identities = 62/121 (51%), Positives = 74/121 (61%)
Frame = +2
Query: 491 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 670
+S+SEGSDY+P QL+ +WG++
Sbjct: 122 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDEEDDNEDGCLKEPKSSGQLMAEWGLD 181
Query: 671 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 850
D+D++FSE DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 182 DVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 241
Query: 851 S 853
S
Sbjct: 242 S 242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,789,973
Number of extensions: 616078
Number of successful extensions: 2832
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2822
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002987
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534909.2| PREDICTED: similar to chromodomain helicase DNA... 231 8e-61
Alignment gi|XP_867915.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867901.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867887.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867881.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867875.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867867.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867860.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867852.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
Alignment gi|XP_867844.1| PREDICTED: similar to chromodomain helicase DNA... 211 7e-55
>ref|XP_534909.2| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 1 [Canis familiaris].
Length = 1912
Score = 231 bits (589), Expect = 8e-61
Identities = 131/223 (58%), Positives = 132/223 (59%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKER+LLCRQLGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 121 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 180
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 223
>ref|XP_867915.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 24 [Canis familiaris].
Length = 1892
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867901.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 22 [Canis familiaris].
Length = 1933
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867887.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 21 [Canis familiaris].
Length = 1889
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867881.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 20 [Canis familiaris].
Length = 1850
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867875.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 19 [Canis familiaris].
Length = 1887
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867867.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 18 [Canis familiaris].
Length = 1760
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867860.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 17 [Canis familiaris].
Length = 1910
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867852.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 16 [Canis familiaris].
Length = 1756
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_867844.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 15 [Canis familiaris].
Length = 1963
Score = 211 bits (538), Expect = 7e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,003,978
Number of extensions: 636183
Number of successful extensions: 2953
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 28
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002987
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Ho... 231 8e-61
Alignment gi|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Ho... 127 2e-29
Alignment gi|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 ... 122 4e-28
Alignment gi|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 iso... 122 4e-28
Alignment gi|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 ... 122 4e-28
>ref|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Homo sapiens].
Length = 1912
Score = 231 bits (589), Expect = 8e-61
Identities = 131/223 (58%), Positives = 132/223 (59%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKER+LLCRQLGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 121 GPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 180
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 223
>ref|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Homo sapiens].
Length = 1954
Score = 127 bits (318), Expect = 2e-29
Identities = 63/121 (52%), Positives = 75/121 (61%)
Frame = +2
Query: 491 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 670
+S+SEGSDY+P QL+ +WG++
Sbjct: 85 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLD 144
Query: 671 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 850
D+D++FSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 145 DVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 204
Query: 851 S 853
S
Sbjct: 205 S 205
>ref|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 isoform 1 [Homo
sapiens].
Length = 2000
Score = 122 bits (307), Expect = 4e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 641 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 820
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 821 FSTNNPFKGSS 853
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
>ref|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 isoform 2 [Homo
sapiens].
Length = 1966
Score = 122 bits (307), Expect = 4e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 641 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 820
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 821 FSTNNPFKGSS 853
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
>ref|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 isoform 3 [Homo
sapiens].
Length = 2059
Score = 122 bits (307), Expect = 4e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 641 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 820
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 195 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 254
Query: 821 FSTNNPFKGSS 853
FS NNPFKGS+
Sbjct: 255 FSANNPFKGSA 265
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,338,384
Number of extensions: 618410
Number of successful extensions: 2746
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2741
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002987
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mu... 211 5e-55
Alignment gi|NP_666131.2| chromodomain helicase DNA binding protein 3 [Mu... 122 3e-28
Alignment gi|NP_001074845.1| chromodomain helicase DNA binding protein 5 ... 122 6e-28
Alignment gi|NP_083492.2| chromodomain helicase DNA binding protein 5 iso... 122 6e-28
>ref|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mus musculus].
Length = 1915
Score = 211 bits (538), Expect = 5e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPDEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEEDEDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|NP_666131.2| chromodomain helicase DNA binding protein 3 [Mus musculus].
Length = 2021
Score = 122 bits (307), Expect = 3e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 641 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 820
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 188 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 247
Query: 821 FSTNNPFKGSS 853
FS NNPFKGS+
Sbjct: 248 FSANNPFKGSA 258
>ref|NP_001074845.1| chromodomain helicase DNA binding protein 5 isoform 1 [Mus
musculus].
Length = 1952
Score = 122 bits (305), Expect = 6e-28
Identities = 54/70 (77%), Positives = 64/70 (91%)
Frame = +2
Query: 644 QLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREF 823
QL+ +WG++D+D++FSE+DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREF
Sbjct: 139 QLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREF 198
Query: 824 STNNPFKGSS 853
S NNPFKGSS
Sbjct: 199 SANNPFKGSS 208
>ref|NP_083492.2| chromodomain helicase DNA binding protein 5 isoform 2 [Mus
musculus].
Length = 1915
Score = 122 bits (305), Expect = 6e-28
Identities = 54/70 (77%), Positives = 64/70 (91%)
Frame = +2
Query: 644 QLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREF 823
QL+ +WG++D+D++FSE+DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREF
Sbjct: 139 QLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREF 198
Query: 824 STNNPFKGSS 853
S NNPFKGSS
Sbjct: 199 SANNPFKGSS 208
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,005,133
Number of extensions: 508070
Number of successful extensions: 2255
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2247
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002987
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126577.2| PREDICTED: chromodomain-helicase-DNA-binding... 211 4e-55
Alignment gi|XP_003127574.2| PREDICTED: chromodomain-helicase-DNA-binding... 124 6e-29
Alignment gi|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding... 122 2e-28
Alignment gi|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding... 122 2e-28
>ref|XP_003126577.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Sus
scrofa].
Length = 1295
Score = 211 bits (538), Expect = 4e-55
Identities = 125/223 (56%), Positives = 125/223 (56%)
Frame = +2
Query: 188 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 367
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 368 XXXXXXXXXRQKKERVLLCRQLGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 547
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKE-------LGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 113
Query: 548 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 727
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 114 GPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 173
Query: 728 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 856
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 174 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG 216
>ref|XP_003127574.2| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Sus
scrofa].
Length = 2054
Score = 124 bits (312), Expect = 6e-29
Identities = 62/121 (51%), Positives = 74/121 (61%)
Frame = +2
Query: 491 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 670
+S+SEGSDY+P QL+ +WG++
Sbjct: 106 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDEDDNDDGCLKEPKSSGQLMAEWGLD 165
Query: 671 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 850
D+D++FSE DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 166 DVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 225
Query: 851 S 853
S
Sbjct: 226 S 226
>ref|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1
[Sus scrofa].
Length = 1968
Score = 122 bits (307), Expect = 2e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 641 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 820
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 821 FSTNNPFKGSS 853
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
>ref|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2
[Sus scrofa].
Length = 2002
Score = 122 bits (307), Expect = 2e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 641 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 820
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 821 FSTNNPFKGSS 853
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,343,323
Number of extensions: 400309
Number of successful extensions: 1878
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1863
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002987
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 355 3e-95
Sscrofa_Chr06 72 6e-10
>Sscrofa_Chr05
|| Length = 111506441
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 109 gtgactcgggccagtgtcgagggccccaggccgcaggcaggagcagctgggccaattccc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66505618 gtgactcgggccagtgtcgagggccccaggccgcaggcaggagcagctgggccaattccc 66505559
Query: 169 tggccgggagcggaaggggatggcgtcgggcctgggctccccgtccccctgctcagcggg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66505558 tggccgggagcggaaggggatggcgtcgggcctgggctccccgtccccctgctcagcggg 66505499
Query: 229 cagtgaggaggaggatatggatgcacttttgaacaacagcctgcccccaccccacccag 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66505498 cagtgaggaggaggatatggatgcacttttgaacaacagcctgcccccaccccacccag 66505440
Score = 305 bits (154), Expect = 2e-80
Identities = 215/240 (89%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 744 gacccctcattgctgccaaaaaccccaagatcgctgtctccaagatgatgatggttttgg 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66500930 gacccctcattgctgccaaaaaccccaagatcgctgtctccaagatgatgatggttttgg 66500871
Query: 804 gtgcgaagtggcgggagttcagcaccaacaaccccttcaaaggcagttctggggcttctg 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66500870 gtgcgaagtggcgggagttcagcaccaacaaccccttcaaaggcagttctggggcttctg 66500811
Query: 864 tgnnnnnnnnnnnnnnnnnnnnnntggccgtggtggagagcatggtgacggccacagagg 923
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 66500810 tggcagcggcagcagcagcagcagtggccgtggtggagagcatggtgacggccacagagg 66500751
Query: 924 ttgcaccacctccaccccccgtggaggggcctatcccgcaaggcc-agaccaaggagggc 982
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct: 66500750 ttgcaccacctccaccccccgtggaggtgcctat-ccgcaaggccaagaccaaggagggc 66500692
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 624 aggagcctaaatcatctgctcagctcttggaagactggggcatggaagacattgaccacg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501174 aggagcctaaatcatctgctcagctcttggaagactggggcatggaagacattgaccacg 66501115
Query: 684 tgttctcagaggaagattatcgcaccctcaccaactacaaggccttcagccagtttgtcc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501114 tgttctcagaggaagattatcgcaccctcaccaactacaaggccttcagccagtttgtcc 66501055
Query: 744 g 744
|
Sbjct: 66501054 g 66501054
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 408 agcgtgtgctcttgtgccggcagctgggggacagctctggggaggggccggagtttgtgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501601 agcgtgtgctcttgtgccggcagctgggggacagctctggggaggggccggagtttgtgg 66501542
Query: 468 aggaggaagaagaggtggctctgcgctcagacagtgagggcagcgactatacccccggc 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501541 aggaggaagaagaggtggctctgcgctcagacagtgagggcagcgactatacccccggc 66501483
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 285 cagaaaacgaagaggacccggaagaggatttgtccgaagcagagactccaaagctcaaga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501913 cagaaaacgaagaggacccggaagaggatttgtccgaagcagagactccaaagctcaaga 66501854
Query: 345 agaagaaaaagcctaagaaacctcgggaccctaaaattcctaagagcaagcgcc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501853 agaagaaaaagcctaagaaacctcgggaccctaaaattcctaagagcaagcgcc 66501800
Score = 200 bits (101), Expect = 1e-48
Identities = 107/109 (98%)
Strand = Plus / Minus
Query: 1 gaggcgacgctggagccggagcttttttccccccttcggccgcggcgaggaggagccgga 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66506412 gaggcgacgctggagccggagccattttccccccttcggccgcggcgaggaggagccgga 66506353
Query: 61 gcgggagtgacacccggccggaccctgcgcgacctgcggcggctccggg 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66506352 gcgggagtgacacccggccggaccctgcgcgacctgcggcggctccggg 66506304
Score = 71.9 bits (36), Expect = 6e-10
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 592 ggaggaggaggacgacgatgacgatgattcaaaggagcct 631
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66501417 ggaggaggaggacgacgatgacgatgattcaaaggtgcct 66501378
>Sscrofa_Chr06
|| Length = 157765593
Score = 71.9 bits (36), Expect = 6e-10
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 782 tccaagatgatgatggttttgggtgcgaagtggcgggagttcagcaccaacaaccccttc 841
||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 61983483 tccaagatgatgaccgtcctgggtgccaagtggcgggagttcagtgccaacaaccccttc 61983424
Query: 842 aaaggcag 849
|| |||||
Sbjct: 61983423 aagggcag 61983416
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,764,736
Number of extensions: 329
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 9
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)