Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002989
(688 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020496.1| placenta-specific 8 [Bos taurus]. 150 1e-36
Alignment gi|NP_001070455.1| placenta-specific gene 8 protein [Bos taurus]. 123 2e-28
Alignment gi|NP_001069010.1| cornifelin [Bos taurus]. 72 4e-13
Alignment gi|XP_001250422.2| PREDICTED: cornifelin-like [Bos taurus]. 72 4e-13
Alignment gi|NP_001180114.1| PLAC8-like protein 1 [Bos taurus]. 64 2e-10
Alignment gi|XP_002689324.1| PREDICTED: PLAC8-like 1-like [Bos taurus]. 64 2e-10
>ref|NP_001020496.1| placenta-specific 8 [Bos taurus].
Length = 109
Score = 150 bits (378), Expect = 1e-36
Identities = 74/108 (68%), Positives = 79/108 (73%)
Frame = +2
Query: 101 MNPVVSQPRYGAGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGA 280
MNPVVSQP Y + +A SDWQ+G+F FPLCLSCQIASDMNECCL G+
Sbjct: 1 MNPVVSQPGYSSAVSASSDWQTGIFDCFDDIGICLCGALFPLCLSCQIASDMNECCLWGS 60
Query: 281 SVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNA 424
SVAMRTMYRTRYGIPGSI D L L P C LCQLKRDIEKRKAMNA
Sbjct: 61 SVAMRTMYRTRYGIPGSICKDCLCLTFLPLCALCQLKRDIEKRKAMNA 108
>ref|NP_001070455.1| placenta-specific gene 8 protein [Bos taurus].
Length = 116
Score = 123 bits (308), Expect = 2e-28
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +2
Query: 110 VVSQPRYGAGGTAV-SDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASV 286
+V+QP G+G S+WQ+G+ TF CL+CQ+ASDMNECCLCG SV
Sbjct: 10 IVTQPGVGSGPAPQNSNWQTGLCDCFSDCGVCLCGTFCFTCLACQVASDMNECCLCGTSV 69
Query: 287 AMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
AMRT+YRTRYGIPGSI DF+ +C P C+LCQ+KRDI +R+A F
Sbjct: 70 AMRTLYRTRYGIPGSICDDFMVTHCCPLCSLCQIKRDINRRRANRTF 116
>ref|NP_001069010.1| cornifelin [Bos taurus].
Length = 111
Score = 72.0 bits (175), Expect = 4e-13
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYGAG--GTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ + T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQSASTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCTPY 63
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GSI D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 LPGGLHSLRTGMRERYRIQGSIGKDWAALTFCLP-CALCQMARELKIRE 111
>ref|XP_001250422.2| PREDICTED: cornifelin-like [Bos taurus].
Length = 111
Score = 72.0 bits (175), Expect = 4e-13
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYGAG--GTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ + T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQSASTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCTPY 63
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GSI D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 LPGGLHSLRTGMRERYRIQGSIGKDWAALTFCLP-CALCQMARELKIRE 111
>ref|NP_001180114.1| PLAC8-like protein 1 [Bos taurus].
Length = 179
Score = 63.5 bits (153), Expect = 2e-10
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Frame = +2
Query: 110 VVSQPRYGAGG-TAVS-------DWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNEC 265
VV QP GA TA++ DW +G+F F P+CL C IA EC
Sbjct: 50 VVKQPVRGASSRTAITAIVQTGGDWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGEC 109
Query: 266 ----CLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF*R 433
L G++ A+R R R+ I G++ D+L +YC C++CQ+ R+++ R +
Sbjct: 110 FCWPLLPGSTFALRIGTRERHKIRGTLCEDWLAVYCCWPCSICQVARELKVRTSQ----- 164
Query: 434 ALGQIHTA 457
L +I+TA
Sbjct: 165 -LYEIYTA 171
>ref|XP_002689324.1| PREDICTED: PLAC8-like 1-like [Bos taurus].
Length = 179
Score = 63.5 bits (153), Expect = 2e-10
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Frame = +2
Query: 110 VVSQPRYGAGG-TAVS-------DWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNEC 265
VV QP GA TA++ DW +G+F F P+CL C IA EC
Sbjct: 50 VVKQPVRGASSRTAITAIVQTGGDWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGEC 109
Query: 266 ----CLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF*R 433
L G++ A+R R R+ I G++ D+L +YC C++CQ+ R+++ R +
Sbjct: 110 FCWPLLPGSTFALRIGTRERHKIRGTLCEDWLAVYCCWPCSICQVARELKVRTSQ----- 164
Query: 434 ALGQIHTA 457
L +I+TA
Sbjct: 165 -LYEIYTA 171
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,168,801
Number of extensions: 661073
Number of successful extensions: 1978
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1970
Number of HSP's successfully gapped: 6
Length of query: 229
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 130
Effective length of database: 14,405,662
Effective search space: 1872736060
Effective search space used: 1872736060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002989
(688 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850879.1| PREDICTED: similar to Placenta-specific gene 8 ... 171 4e-43
Alignment gi|XP_855264.1| PREDICTED: similar to cornifelin [Canis familia... 72 5e-13
>ref|XP_850879.1| PREDICTED: similar to Placenta-specific gene 8 protein (C15
protein) [Canis familiaris].
Length = 110
Score = 171 bits (434), Expect = 4e-43
Identities = 82/110 (74%), Positives = 88/110 (80%), Gaps = 1/110 (0%)
Frame = +2
Query: 101 MNPVVSQPRYGAGGTAV-SDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCG 277
MNPVVSQP YG G+ + SDWQ+G+F F PLCLSCQIASDMNECCLCG
Sbjct: 1 MNPVVSQPGYGTAGSMMNSDWQTGMFDCFDDLGICLCGAFCPLCLSCQIASDMNECCLCG 60
Query: 278 ASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
ASVAMRT+YRTR+GIPGSI SDFLWL CFP CTLCQLKRDIEKRKAMNAF
Sbjct: 61 ASVAMRTLYRTRFGIPGSIFSDFLWLGCFPLCTLCQLKRDIEKRKAMNAF 110
>ref|XP_855264.1| PREDICTED: similar to cornifelin [Canis familiaris].
Length = 236
Score = 72.0 bits (175), Expect = 5e-13
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYGAG--GTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ + T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 129 PVTSQPQCASSCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPY 188
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 189 LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,995,939
Number of extensions: 645450
Number of successful extensions: 2041
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 130
Effective length of database: 15,574,240
Effective search space: 2024651200
Effective search space used: 2024651200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002989
(688 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124188.1| placenta-specific gene 8 protein [Homo sapie... 124 1e-28
Alignment gi|NP_057703.1| placenta-specific gene 8 protein [Homo sapiens]. 124 1e-28
Alignment gi|NP_001124187.1| placenta-specific gene 8 protein [Homo sapie... 124 1e-28
Alignment gi|NP_115877.2| cornifelin [Homo sapiens]. 71 1e-12
Alignment gi|NP_001025040.1| PLAC8-like protein 1 [Homo sapiens]. 57 1e-08
>ref|NP_001124188.1| placenta-specific gene 8 protein [Homo sapiens].
Length = 115
Score = 124 bits (310), Expect = 1e-28
Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +2
Query: 110 VVSQPRYGAGGTAV-SDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASV 286
VV+QP G G S+WQ+G+ TF CL CQ+A+DMNECCLCG SV
Sbjct: 9 VVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSV 68
Query: 287 AMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
AMRT+YRTRYGIPGSI D++ C P+CTLCQ+KRDI +R+AM F
Sbjct: 69 AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF 115
>ref|NP_057703.1| placenta-specific gene 8 protein [Homo sapiens].
Length = 115
Score = 124 bits (310), Expect = 1e-28
Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +2
Query: 110 VVSQPRYGAGGTAV-SDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASV 286
VV+QP G G S+WQ+G+ TF CL CQ+A+DMNECCLCG SV
Sbjct: 9 VVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSV 68
Query: 287 AMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
AMRT+YRTRYGIPGSI D++ C P+CTLCQ+KRDI +R+AM F
Sbjct: 69 AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF 115
>ref|NP_001124187.1| placenta-specific gene 8 protein [Homo sapiens].
Length = 115
Score = 124 bits (310), Expect = 1e-28
Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +2
Query: 110 VVSQPRYGAGGTAV-SDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASV 286
VV+QP G G S+WQ+G+ TF CL CQ+A+DMNECCLCG SV
Sbjct: 9 VVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSV 68
Query: 287 AMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
AMRT+YRTRYGIPGSI D++ C P+CTLCQ+KRDI +R+AM F
Sbjct: 69 AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF 115
>ref|NP_115877.2| cornifelin [Homo sapiens].
Length = 112
Score = 70.9 bits (172), Expect = 1e-12
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Frame = +2
Query: 107 PVVSQPRYGAGG---TAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC--- 268
PV SQP+ T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQCATTSCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAP 63
Query: 269 -LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 YLPGGLHSIRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 112
>ref|NP_001025040.1| PLAC8-like protein 1 [Homo sapiens].
Length = 177
Score = 57.4 bits (137), Expect = 1e-08
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Frame = +2
Query: 71 GRAPSNSVLKMNPVVSQPRYGAGG----TAV----SDWQSGVFXXXXXXXXXXXXTFFPL 226
G P+++V+K QP GA G TA+ W +G+F F P+
Sbjct: 41 GHVPASAVVK------QPVRGASGRTTITAIVQTGGGWSTGLFSVCRDRRICFCGLFCPM 94
Query: 227 CLSCQIASDMNECC----LCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKR 394
CL C IA EC L G++ A+R R R+ I G++ D+L ++C ++CQ+ R
Sbjct: 95 CLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGTLCEDWLAVHCCWAFSICQVAR 154
Query: 395 DIEKR 409
+++ R
Sbjct: 155 ELKMR 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,630,811
Number of extensions: 641532
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1924
Number of HSP's successfully gapped: 5
Length of query: 229
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 130
Effective length of database: 15,033,728
Effective search space: 1954384640
Effective search space used: 1954384640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002989
(688 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_631937.1| placenta-specific gene 8 protein [Mus musculus]. 113 1e-25
Alignment gi|NP_001074844.1| cornifelin isoform 2 [Mus musculus]. 70 1e-12
Alignment gi|NP_082495.1| cornifelin isoform 1 [Mus musculus]. 70 1e-12
Alignment gi|NP_081348.1| PLAC8-like protein 1 [Mus musculus]. 54 1e-07
>ref|NP_631937.1| placenta-specific gene 8 protein [Mus musculus].
Length = 112
Score = 113 bits (283), Expect = 1e-25
Identities = 54/106 (50%), Positives = 70/106 (66%)
Frame = +2
Query: 110 VVSQPRYGAGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASVA 289
+V+QP + S+WQ+ + TF CL CQ+A+DMNECCLCG +VA
Sbjct: 8 IVTQPGF-VRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECCLCGTTVA 66
Query: 290 MRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
MRT+YRTRYGIPGSI D++ P C++CQLKRDI +R+AMNAF
Sbjct: 67 MRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINRRRAMNAF 112
>ref|NP_001074844.1| cornifelin isoform 2 [Mus musculus].
Length = 111
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYG--AGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQCANTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPY 63
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 111
>ref|NP_082495.1| cornifelin isoform 1 [Mus musculus].
Length = 124
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYG--AGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 17 PVTSQPQCANTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPY 76
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 77 LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 124
>ref|NP_081348.1| PLAC8-like protein 1 [Mus musculus].
Length = 177
Score = 53.5 bits (127), Expect = 1e-07
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Frame = +2
Query: 110 VVSQPRYGA-GGTAVS-------DWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNEC 265
VV QP GA G T V+ DW +G+F P+CL C IA EC
Sbjct: 48 VVKQPIRGAIGRTTVAAIVQTGGDWSTGLFSVCRDRKICFWGLLCPMCLECDIARHYGEC 107
Query: 266 C----LCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKR 409
L G++ A+R R R+ I G++ D + ++C ++CQ+ R+++ R
Sbjct: 108 LCWPLLPGSTFALRIGTRERHRIQGTLCEDCVVVHCCWPFSICQVARELKMR 159
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,788,952
Number of extensions: 541167
Number of successful extensions: 1689
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1685
Number of HSP's successfully gapped: 4
Length of query: 229
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 131
Effective length of database: 12,674,031
Effective search space: 1660298061
Effective search space used: 1660298061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002989
(688 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129399.1| PREDICTED: placenta-specific gene 8 protein-... 219 1e-65
Alignment gi|XP_003357150.1| PREDICTED: placenta-specific gene 8 protein-... 200 5e-60
Alignment gi|XP_003129401.1| PREDICTED: placenta-specific gene 8 protein-... 115 3e-26
Alignment gi|XP_003129400.1| PREDICTED: placenta-specific gene 8 protein-... 115 3e-26
Alignment gi|XP_003127210.1| PREDICTED: cornifelin-like isoform 3 [Sus sc... 74 6e-14
Alignment gi|XP_003127209.2| PREDICTED: cornifelin-like isoform 2 [Sus sc... 74 6e-14
Alignment gi|XP_003127208.1| PREDICTED: cornifelin-like isoform 1 [Sus sc... 74 6e-14
Alignment gi|XP_003124115.1| PREDICTED: PLAC8-like protein 1-like [Sus sc... 62 2e-10
>ref|XP_003129399.1| PREDICTED: placenta-specific gene 8 protein-like isoform 1 [Sus
scrofa].
Length = 153
Score = 219 bits (558), Expect(2) = 1e-65
Identities = 104/116 (89%), Positives = 104/116 (89%)
Frame = +2
Query: 71 GRAPSNSVLKMNPVVSQPRYGAGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIAS 250
GRAPSNSVLKMNPVVSQPRYGAGGTAVSDWQSGVF TFFPLCLSCQIAS
Sbjct: 19 GRAPSNSVLKMNPVVSQPRYGAGGTAVSDWQSGVFDCCDDMGICICGTFFPLCLSCQIAS 78
Query: 251 DMNECCLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM 418
DMNECCLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM
Sbjct: 79 DMNECCLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM 134
Score = 48.5 bits (114), Expect(2) = 1e-65
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 399 LRKEKR*MLSKGRWVRFTLHWKKMLK 476
+ K K MLSKGRWVRFTLHWKKMLK
Sbjct: 128 IEKRKAMMLSKGRWVRFTLHWKKMLK 153
>ref|XP_003357150.1| PREDICTED: placenta-specific gene 8 protein-like isoform 2 [Sus
scrofa].
Length = 125
Score = 200 bits (509), Expect(2) = 5e-60
Identities = 94/106 (88%), Positives = 94/106 (88%)
Frame = +2
Query: 101 MNPVVSQPRYGAGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGA 280
MNPVVSQPRYGAGGTAVSDWQSGVF TFFPLCLSCQIASDMNECCLCGA
Sbjct: 1 MNPVVSQPRYGAGGTAVSDWQSGVFDCCDDMGICICGTFFPLCLSCQIASDMNECCLCGA 60
Query: 281 SVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM 418
SVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM
Sbjct: 61 SVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAM 106
Score = 48.5 bits (114), Expect(2) = 5e-60
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 399 LRKEKR*MLSKGRWVRFTLHWKKMLK 476
+ K K MLSKGRWVRFTLHWKKMLK
Sbjct: 100 IEKRKAMMLSKGRWVRFTLHWKKMLK 125
>ref|XP_003129401.1| PREDICTED: placenta-specific gene 8 protein-like isoform 2 [Sus
scrofa].
Length = 113
Score = 115 bits (287), Expect = 3e-26
Identities = 55/106 (51%), Positives = 70/106 (66%)
Frame = +2
Query: 110 VVSQPRYGAGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASVA 289
+V+QP G S+WQ+G+ F CL+ Q+ASD+NECCLCG SVA
Sbjct: 9 IVTQPG-GGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECCLCGTSVA 67
Query: 290 MRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
MRT+YRTRYGIPGSI DF+ C P C+LCQ+KRDI +R+AM+ F
Sbjct: 68 MRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 113
>ref|XP_003129400.1| PREDICTED: placenta-specific gene 8 protein-like isoform 1 [Sus
scrofa].
Length = 113
Score = 115 bits (287), Expect = 3e-26
Identities = 55/106 (51%), Positives = 70/106 (66%)
Frame = +2
Query: 110 VVSQPRYGAGGTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECCLCGASVA 289
+V+QP G S+WQ+G+ F CL+ Q+ASD+NECCLCG SVA
Sbjct: 9 IVTQPG-GGSIPQTSNWQTGLCDCFSDCGVCLCGIFCFSCLAVQVASDLNECCLCGTSVA 67
Query: 290 MRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKRKAMNAF 427
MRT+YRTRYGIPGSI DF+ C P C+LCQ+KRDI +R+AM+ F
Sbjct: 68 MRTLYRTRYGIPGSICDDFMVTLCCPMCSLCQIKRDINRRRAMHTF 113
>ref|XP_003127210.1| PREDICTED: cornifelin-like isoform 3 [Sus scrofa].
Length = 111
Score = 74.3 bits (181), Expect = 6e-14
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYGAG--GTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ +G T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQCASGCYQTQLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPY 63
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 111
>ref|XP_003127209.2| PREDICTED: cornifelin-like isoform 2 [Sus scrofa].
Length = 111
Score = 74.3 bits (181), Expect = 6e-14
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYGAG--GTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ +G T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQCASGCYQTQLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPY 63
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 111
>ref|XP_003127208.1| PREDICTED: cornifelin-like isoform 1 [Sus scrofa].
Length = 111
Score = 74.3 bits (181), Expect = 6e-14
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Frame = +2
Query: 107 PVVSQPRYGAG--GTAVSDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNECC---- 268
PV SQP+ +G T +SDW +G+ TF PLCL+C+I+ D ECC
Sbjct: 4 PVTSQPQCASGCYQTQLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPY 63
Query: 269 LCGASVAMRTMYRTRYGIPGSIMSDFLWL-YCFPNCTLCQLKRDIEKRK 412
L G ++RT R RY I GS+ D+ L +C P C LCQ+ R+++ R+
Sbjct: 64 LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLP-CALCQMARELKIRE 111
>ref|XP_003124115.1| PREDICTED: PLAC8-like protein 1-like [Sus scrofa].
Length = 178
Score = 62.4 bits (150), Expect = 2e-10
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Frame = +2
Query: 110 VVSQPRYGAGG----TAV----SDWQSGVFXXXXXXXXXXXXTFFPLCLSCQIASDMNEC 265
VV QP GA G TAV DW +G+F F PLCL C IA EC
Sbjct: 49 VVKQPVRGASGRTTITAVVQTGGDWSTGLFSVCRDRRICFCGLFCPLCLECDIARHYGEC 108
Query: 266 ----CLCGASVAMRTMYRTRYGIPGSIMSDFLWLYCFPNCTLCQLKRDIEKR 409
L G++ A+RT R R+ I G++ D+L ++C ++CQ+ R+++ R
Sbjct: 109 FCWPLLPGSTFALRTGTRERHKIRGTLCEDWLAVHCCWPFSICQVARELKLR 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,419,036
Number of extensions: 459840
Number of successful extensions: 1319
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1313
Number of HSP's successfully gapped: 10
Length of query: 229
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,978,717
Effective search space: 1203148078
Effective search space used: 1203148078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002989
(688 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 408 e-111
>Sscrofa_Chr08
|| Length = 148491826
Score = 408 bits (206), Expect = e-111
Identities = 212/214 (99%)
Strand = Plus / Plus
Query: 440 ggtcagattcacactgcattggaagaaaatgctgaaatgaaatgctgcatttattcagtg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144530791 ggtcagattcacactgcattggaagaaaatgctgaaatgaaatgctgcatttattcagtg 144530850
Query: 500 ctggctatctcacctcaagtcttagaaactaattcagctcatcatatggtttcaaatggc 559
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144530851 ctggctatctcccctcaagtcttagaaactaattcagctcatcatatggtttcaaatggc 144530910
Query: 560 tttcaagtatttttatttttctggcttatttggaaagaaatatctttccagtgctattcg 619
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 144530911 tttcaagtatttttatttttctggcttattttgaaagaaatatctttccagtgctattcg 144530970
Query: 620 ctaagctgactgccattaaaaaattaatctcctc 653
||||||||||||||||||||||||||||||||||
Sbjct: 144530971 ctaagctgactgccattaaaaaattaatctcctc 144531004
Score = 252 bits (127), Expect = 2e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 71 ggtcgcgccccttcgaactcagtcttaaaaatgaatccagttgtttcgcagccaagatac 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144522823 ggtcgcgccccttcgaactcagtcttaaaaatgaatccagttgtttcgcagccaagatac 144522882
Query: 131 ggcgccgggggcacagcggttagtgactggcaaagcggcgtctttgactgctgtgatgac 190
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 144522883 ggcgccgggggcacagcggttagtgactggcagagcggcgtctttgactgctgtgatgac 144522942
Query: 191 atggggatttg 201
|||||||||||
Sbjct: 144522943 atggggatttg 144522953
Score = 250 bits (126), Expect = 9e-64
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 201 gcatctgtgggactttcttccccctgtgcctgtcgtgtcagatcgcctctgacatgaacg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144524751 gcatctgtgggactttcttccccctgtgcctgtcgtgtcagatcgcctctgacatgaacg 144524810
Query: 261 aatgctgcctgtgcggagccagcgtcgccatgaggaccatgtaccggacccggtacggca 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144524811 aatgctgcctgtgcggagccagcgtcgccatgaggaccatgtaccggacccggtacggca 144524870
Query: 321 tcccgg 326
||||||
Sbjct: 144524871 tcccgg 144524876
Score = 218 bits (110), Expect = 3e-54
Identities = 117/118 (99%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 325 gggatccatcatgagtgacttcctgtggctgtactgtttccctaactgcaccctctgtca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144528718 gggatccatcatgagtgacttcctgtggctgtactgtttccctaactgcaccctctgtca 144528777
Query: 385 actcaagcgggatattgagaaaagaaaagcgatgaatgctttctaaagggcgctgggt 442
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 144528778 actcaagcgggatattgagaaaagaaaagcgatg-atgctttctaaagggcgctgggt 144528834
Score = 137 bits (69), Expect = 9e-30
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 tcaaaaccagagtgccccaggcttctcctggtggacctgagctgctgtcctctgtcgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 144504888 tcaaaaccagagtgccccaggcttctcctggtggacctgagctgctgtcctctgtagttt 144504947
Query: 61 acctccgtgtggt 73
|||||||||||||
Sbjct: 144504948 acctccgtgtggt 144504960
Score = 61.9 bits (31), Expect = 4e-07
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 248 tctgacatgaacgaatgctgcctgtgcggagccagcgtcgccatgaggaccatgtaccgg 307
|||||| ||||||||||||||||||| ||| | || ||||| ||| ||||| | ||| ||
Sbjct: 144563348 tctgacctgaacgaatgctgcctgtgtggaacgagtgtcgcaatgcggaccctctacagg 144563407
Query: 308 acccggtacggcatcccgg 326
|| || |||||||||||||
Sbjct: 144563408 actcgctacggcatcccgg 144563426
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,697,173
Number of extensions: 725
Number of successful extensions: 725
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 6
Length of query: 688
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 667
Effective length of database: 2,808,413,156
Effective search space: 1873211575052
Effective search space used: 1873211575052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)