Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002990
(1445 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_592427.2| PREDICTED: OAF homolog [Bos taurus]. 462 e-130
Alignment gi|XP_002693075.1| PREDICTED: OAF homolog [Bos taurus]. 460 e-129
>ref|XP_592427.2| PREDICTED: OAF homolog [Bos taurus].
Length = 282
Score = 462 bits (1189), Expect = e-130
Identities = 222/242 (91%), Positives = 231/242 (95%)
Frame = +1
Query: 436 PAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALILG 615
P+ELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTL+SFTADFKK+VKIFRALILG
Sbjct: 41 PSELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLISFTADFKKDVKIFRALILG 100
Query: 616 ELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAVNF 795
ELEKGQSQFQALCFVTRL HNEIIPSEAMAKLRQKNPRAVRQAEEVRG E +HMDIAVNF
Sbjct: 101 ELEKGQSQFQALCFVTRLHHNEIIPSEAMAKLRQKNPRAVRQAEEVRGPEQMHMDIAVNF 160
Query: 796 SQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQVG 975
SQG LLSPHLRNVCAEA DAIYTRQEDV+FWLEQGVD SVFEALP+ASEQV LPRCGQVG
Sbjct: 161 SQGALLSPHLRNVCAEAVDAIYTRQEDVRFWLEQGVDGSVFEALPKASEQVLLPRCGQVG 220
Query: 976 DRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLWDE 1155
DRGKPC+C YGLSLAWYPCMLKYCH RDRPAPYKCGIRSCQK+YSF F VPQ+QLCLWDE
Sbjct: 221 DRGKPCICRYGLSLAWYPCMLKYCHGRDRPAPYKCGIRSCQKNYSFDFYVPQKQLCLWDE 280
Query: 1156 DP 1161
DP
Sbjct: 281 DP 282
>ref|XP_002693075.1| PREDICTED: OAF homolog [Bos taurus].
Length = 282
Score = 460 bits (1184), Expect = e-129
Identities = 221/242 (91%), Positives = 230/242 (95%)
Frame = +1
Query: 436 PAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALILG 615
P+ELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTL+SFTADFKK+VKIFRALILG
Sbjct: 41 PSELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLISFTADFKKDVKIFRALILG 100
Query: 616 ELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAVNF 795
ELEKGQSQFQALCFVTRL HNEIIPSEAMAKLRQKNPRAVRQAEEVRG E +HMDIAVNF
Sbjct: 101 ELEKGQSQFQALCFVTRLHHNEIIPSEAMAKLRQKNPRAVRQAEEVRGPEQMHMDIAVNF 160
Query: 796 SQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQVG 975
SQG LLSPHLRNVCAEA DAIYTRQEDV+FWLEQGVD SVFEALP+ASEQV LPRCG VG
Sbjct: 161 SQGALLSPHLRNVCAEAVDAIYTRQEDVRFWLEQGVDGSVFEALPKASEQVLLPRCGHVG 220
Query: 976 DRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLWDE 1155
DRGKPC+C YGLSLAWYPCMLKYCH RDRPAPYKCGIRSCQK+YSF F VPQ+QLCLWDE
Sbjct: 221 DRGKPCICRYGLSLAWYPCMLKYCHGRDRPAPYKCGIRSCQKNYSFDFYVPQKQLCLWDE 280
Query: 1156 DP 1161
DP
Sbjct: 281 DP 282
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,131,141
Number of extensions: 1508280
Number of successful extensions: 5982
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5972
Number of HSP's successfully gapped: 2
Length of query: 481
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 375
Effective length of database: 14,174,046
Effective search space: 5315267250
Effective search space used: 5315267250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002990
(1445 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546479.2| PREDICTED: similar to RIKEN cDNA D130038B21 [Ca... 371 e-103
>ref|XP_546479.2| PREDICTED: similar to RIKEN cDNA D130038B21 [Canis familiaris].
Length = 305
Score = 371 bits (953), Expect = e-103
Identities = 174/194 (89%), Positives = 184/194 (94%)
Frame = +1
Query: 580 KNVKIFRALILGELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRG 759
++VKIFRALILGELEKGQSQFQALCFVTRL HNEIIPSEAMAKLRQKNPRAVRQAEEVRG
Sbjct: 112 QDVKIFRALILGELEKGQSQFQALCFVTRLHHNEIIPSEAMAKLRQKNPRAVRQAEEVRG 171
Query: 760 LEYLHMDIAVNFSQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQAS 939
LE+LHMD+AVNFSQGGLLSPHLRNVCAEAAD IYTRQEDV+FWLEQGVDSSVFE LP+AS
Sbjct: 172 LEHLHMDVAVNFSQGGLLSPHLRNVCAEAADTIYTRQEDVRFWLEQGVDSSVFEPLPEAS 231
Query: 940 EQVSLPRCGQVGDRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSF 1119
EQ+ LPRCGQV D G+PC+C YGLSLAWYPCMLKYCHSRDRP PYKCGIRSCQK+YSF F
Sbjct: 232 EQMLLPRCGQVADGGRPCVCRYGLSLAWYPCMLKYCHSRDRPTPYKCGIRSCQKNYSFDF 291
Query: 1120 SVPQRQLCLWDEDP 1161
VPQRQLCLWDEDP
Sbjct: 292 YVPQRQLCLWDEDP 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,061,676
Number of extensions: 1359314
Number of successful extensions: 6427
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6418
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 374
Effective length of database: 15,307,552
Effective search space: 5725024448
Effective search space used: 5725024448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002990
(1445 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848602.1| out at first protein homolog precursor [Homo sa... 464 e-130
>ref|NP_848602.1| out at first protein homolog precursor [Homo sapiens].
Length = 273
Score = 464 bits (1193), Expect = e-130
Identities = 223/242 (92%), Positives = 231/242 (95%)
Frame = +1
Query: 436 PAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALILG 615
PAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKK+VK+FRALILG
Sbjct: 29 PAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKDVKVFRALILG 88
Query: 616 ELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAVNF 795
ELEKGQSQFQALCFVT+LQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLE+LHMD+AVNF
Sbjct: 89 ELEKGQSQFQALCFVTQLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEHLHMDVAVNF 148
Query: 796 SQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQVG 975
SQG LLSPHL NVCAEA DAIYTRQEDV+FWLEQGVDSSVFEALP+ASEQ LPRC QVG
Sbjct: 149 SQGALLSPHLHNVCAEAVDAIYTRQEDVRFWLEQGVDSSVFEALPKASEQAELPRCRQVG 208
Query: 976 DRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLWDE 1155
D GKPC+C YGLSLAWYPCMLKYCHSRDRP PYKCGIRSCQKSYSF F VPQRQLCLWDE
Sbjct: 209 DHGKPCVCRYGLSLAWYPCMLKYCHSRDRPTPYKCGIRSCQKSYSFDFYVPQRQLCLWDE 268
Query: 1156 DP 1161
DP
Sbjct: 269 DP 270
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,930,509
Number of extensions: 1307940
Number of successful extensions: 6032
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6021
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 375
Effective length of database: 14,802,980
Effective search space: 5551117500
Effective search space used: 5551117500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002990
(1445 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848759.1| out at first protein homolog precursor [Mus mus... 452 e-127
>ref|NP_848759.1| out at first protein homolog precursor [Mus musculus].
Length = 282
Score = 452 bits (1164), Expect = e-127
Identities = 217/242 (89%), Positives = 227/242 (93%)
Frame = +1
Query: 436 PAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALILG 615
PAELRVRVRLPD QV EESLQADSDADSISL+LRKPDGTL+SF ADFKK+VKIFRALILG
Sbjct: 41 PAELRVRVRLPDSQVIEESLQADSDADSISLDLRKPDGTLISFIADFKKDVKIFRALILG 100
Query: 616 ELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAVNF 795
ELEKGQSQFQALCFVTRL HN+IIPSEAMAKLRQKNPRAVRQAEEVRGLE LHMDIAVNF
Sbjct: 101 ELEKGQSQFQALCFVTRLHHNDIIPSEAMAKLRQKNPRAVRQAEEVRGLEQLHMDIAVNF 160
Query: 796 SQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQVG 975
SQGGLLSPHL NVCAEA DAIYTRQEDVQFW E+GVDSSVFEALP+A EQ LPRCG+VG
Sbjct: 161 SQGGLLSPHLHNVCAEATDAIYTRQEDVQFWTERGVDSSVFEALPKALEQAELPRCGRVG 220
Query: 976 DRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLWDE 1155
DRGKPC CHY LSLAWYPCMLKYCHSRDRPAPYKCGIRSC+KSY+F F VPQ+QLCLWDE
Sbjct: 221 DRGKPCTCHYSLSLAWYPCMLKYCHSRDRPAPYKCGIRSCRKSYTFDFYVPQKQLCLWDE 280
Query: 1156 DP 1161
DP
Sbjct: 281 DP 282
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,261,328
Number of extensions: 1084288
Number of successful extensions: 4714
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4710
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 376
Effective length of database: 12,463,779
Effective search space: 4686380904
Effective search space used: 4686380904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002990
(1445 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130002.2| PREDICTED: out at first protein homolog [Sus... 499 e-141
>ref|XP_003130002.2| PREDICTED: out at first protein homolog [Sus scrofa].
Length = 284
Score = 499 bits (1286), Expect = e-141
Identities = 244/244 (100%), Positives = 244/244 (100%)
Frame = +1
Query: 430 SVPAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALI 609
SVPAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALI
Sbjct: 41 SVPAELRVRVRLPDGQVTEESLQADSDADSISLELRKPDGTLVSFTADFKKNVKIFRALI 100
Query: 610 LGELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAV 789
LGELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAV
Sbjct: 101 LGELEKGQSQFQALCFVTRLQHNEIIPSEAMAKLRQKNPRAVRQAEEVRGLEYLHMDIAV 160
Query: 790 NFSQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQ 969
NFSQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQ
Sbjct: 161 NFSQGGLLSPHLRNVCAEAADAIYTRQEDVQFWLEQGVDSSVFEALPQASEQVSLPRCGQ 220
Query: 970 VGDRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLW 1149
VGDRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLW
Sbjct: 221 VGDRGKPCLCHYGLSLAWYPCMLKYCHSRDRPAPYKCGIRSCQKSYSFSFSVPQRQLCLW 280
Query: 1150 DEDP 1161
DEDP
Sbjct: 281 DEDP 284
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,991,690
Number of extensions: 1279658
Number of successful extensions: 3888
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3883
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 378
Effective length of database: 8,779,541
Effective search space: 3318666498
Effective search space used: 3318666498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002990
(1445 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1033 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1033 bits (521), Expect = 0.0
Identities = 524/525 (99%)
Strand = Plus / Plus
Query: 897 aggtgtggacagctctgtgtttgaagctctgccccaggcctcagagcaggtgtcgctgcc 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430247 aggtgtggacagctctgtgtttgaagctctgccccaggcctcagagcaggtgtcgctgcc 52430306
Query: 957 tcgctgtggacaggttggggaccgtgggaagccctgcctctgccactatggcctgagcct 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430307 tcgctgtggacaggttggggaccgtgggaagccctgcctctgccactatggcctgagcct 52430366
Query: 1017 ggcctggtacccctgcatgctcaagtactgccacagccgtgaccgcccagcaccctacaa 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430367 ggcctggtacccctgcatgctcaagtactgccacagccgtgaccgcccagcaccctacaa 52430426
Query: 1077 gtgtggcatccgcagctgtcagaagagctacagcttcagcttctccgtgccccagaggca 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430427 gtgtggcatccgcagctgtcagaagagctacagcttcagcttctccgtgccccagaggca 52430486
Query: 1137 gttgtgcctctgggatgaggacccctagctgggctggggagaggggtggtctctgaggcc 1196
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 52430487 gttgtgcctctgggatgaggacccctagctgggctggggagaggggtggtccctgaggcc 52430546
Query: 1197 actgctctgggcccaccgctcctcccccagccggaggggatggccagccacgaccgcggc 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430547 actgctctgggcccaccgctcctcccccagccggaggggatggccagccacgaccgcggc 52430606
Query: 1257 ctcattgctcgttcttcctttcccctaatccctgagcctctggccacctcacccgtgact 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430607 ctcattgctcgttcttcctttcccctaatccctgagcctctggccacctcacccgtgact 52430666
Query: 1317 gtgaaaagggatgtggcacagcaggggttaactcatgaaggcagcccccactcccaccct 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430667 gtgaaaagggatgtggcacagcaggggttaactcatgaaggcagcccccactcccaccct 52430726
Query: 1377 gtgccttgcttggggacagaaagagaagggccgtcttcaagcttg 1421
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52430727 gtgccttgcttggggacagaaagagaagggccgtcttcaagcttg 52430771
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 714 acagaaaaatccacgggcagtgcggcaggccgaggaggtacggggcctggagtatctgca 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52428206 acagaaaaatccacgggcagtgcggcaggccgaggaggtacggggcctggagtatctgca 52428265
Query: 774 catggacatcgctgtgaacttcagccaggggggcctgctgagcccccacctccgcaacgt 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52428266 catggacatcgctgtgaacttcagccaggggggcctgctgagcccccacctccgcaacgt 52428325
Query: 834 gtgtgccgaagccgccgatgccatctacactcgccaggaggatgtccagttctggctgga 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52428326 gtgtgccgaagccgccgatgccatctacactcgccaggaggatgtccagttctggctgga 52428385
Query: 894 gcaaggt 900
|||||||
Sbjct: 52428386 gcaaggt 52428392
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 430 agcgtgcctgcggagctgcgggtccgcgtgcggctgcccgacggccaggtgaccgaggag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52413917 agcgtgcctgcggagctgcgggtccgcgtgcggctgcccgacggccaggtgaccgaggag 52413976
Query: 490 agcctgcaggcggacagcgacgccgacagcatcagcctggagctgcgcaagcccgacggc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52413977 agcctgcaggcggacagcgacgccgacagcatcagcctggagctgcgcaagcccgacggc 52414036
Query: 550 actcttgtttccttcaccgccgacttcaagaag 582
|||||||||||||||||||||||||||||||||
Sbjct: 52414037 actcttgtttccttcaccgccgacttcaagaag 52414069
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 581 agaatgtgaagatcttccgagcgttgatcctgggggagctggaaaaggggcagagtcagt 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52426899 agaatgtgaagatcttccgagcgttgatcctgggggagctggaaaaggggcagagtcagt 52426958
Query: 641 tccaggccctctgctttgtcacccggctgcagcacaatgagatcattcccagtgaggcca 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52426959 tccaggccctctgctttgtcacccggctgcagcacaatgagatcattcccagtgaggcca 52427018
Query: 701 tggccaagctccgacag 717
|||||||||||||||||
Sbjct: 52427019 tggccaagctccgacag 52427035
Score = 200 bits (101), Expect = 2e-48
Identities = 145/167 (86%)
Strand = Plus / Plus
Query: 18 agagtctcagagcgcaggagtcgggggccccgggagccgcagcgcggggccgtggagggg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52413505 agagtctcagagcgcaggagtcgggggccccgggagccgcagcgcggggccgtggagggg 52413564
Query: 78 gcggactggtttcaggagcgcggtgtccggctcggannnnnnnnnnnnnnnnnnnnnnag 137
|||||||||||||||||||||||||||||||||||| ||
Sbjct: 52413565 gcggactggtttcaggagcgcggtgtccggctcggagccgccggggggcgcgcggcggag 52413624
Query: 138 cgtagcccacgtgcgtcggcgccacgtcgcgggagcccagcggctga 184
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52413625 cgtagcccacgtgcgtcggcgccacgtcgcgggagcccagcggctga 52413671
Score = 95.6 bits (48), Expect = 6e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 215 aaactagcctccaagttcgggcgaagtttggtcccgccgctccgggta 262
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52413702 aaactagcctccaagttcgggcgaagtttggtcccgccgctccgggta 52413749
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,932,458
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 7
Length of query: 1445
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1424
Effective length of database: 2,808,413,156
Effective search space: 3999180334144
Effective search space used: 3999180334144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)