Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002993
(1090 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091459.1| CD82 molecule [Bos taurus]. 405 e-113
Alignment gi|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos... 405 e-113
Alignment gi|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos... 405 e-113
Alignment gi|NP_001039476.1| leukocyte antigen CD37 [Bos taurus]. 169 5e-42
Alignment gi|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus]. 115 7e-26
Alignment gi|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus]. 115 7e-26
Alignment gi|NP_001095322.1| tetraspanin-4 [Bos taurus]. 110 2e-24
Alignment gi|NP_001069852.1| tetraspanin-7 [Bos taurus]. 108 8e-24
Alignment gi|NP_001029442.1| tetraspanin-1 [Bos taurus]. 106 3e-23
Alignment gi|NP_001074389.1| tetraspanin-18 [Bos taurus]. 102 8e-22
>ref|NP_001091459.1| CD82 molecule [Bos taurus].
Length = 268
Score = 405 bits (1042), Expect = e-113
Identities = 194/268 (72%), Positives = 219/268 (81%), Gaps = 2/268 (0%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MG+ACIKVTKY GAVILGFG+WIL D++SFIS+LQTSSTS KV AY+FI
Sbjct: 1 MGSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
S+GA TMLMGFLGC+GAV EVRCLLG+YFAFL+LILIAQV AGV FYFNMG+LKQEMGSI
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
VT+LI Y +G D+LQEAWDYVQAQV+CCGWVS+ NWTEN LMN T+ T+PCSCK
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSD 180
Query: 684 QNDSSLPLEKGFCHDL--NGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVA 857
++D+ + +KGFC N Q GNNP WPVY EGCMEKVQ WLQENLG+ILGVCVGVA
Sbjct: 181 EDDALMMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVA 240
Query: 858 VIELLGMLLSMFLCRSIHSEDYSKVPKY 941
VIELLGM LSMFLCR +HSEDYSKVPKY
Sbjct: 241 VIELLGMFLSMFLCRRVHSEDYSKVPKY 268
>ref|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos taurus].
Length = 268
Score = 405 bits (1042), Expect = e-113
Identities = 194/268 (72%), Positives = 219/268 (81%), Gaps = 2/268 (0%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MG+ACIKVTKY GAVILGFG+WIL D++SFIS+LQTSSTS KV AY+FI
Sbjct: 1 MGSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
S+GA TMLMGFLGC+GAV EVRCLLG+YFAFL+LILIAQV AGV FYFNMG+LKQEMGSI
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
VT+LI Y +G D+LQEAWDYVQAQV+CCGWVS+ NWTEN LMN T+ T+PCSCK
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSD 180
Query: 684 QNDSSLPLEKGFCHDL--NGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVA 857
++D+ + +KGFC N Q GNNP WPVY EGCMEKVQ WLQENLG+ILGVCVGVA
Sbjct: 181 EDDALMMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVA 240
Query: 858 VIELLGMLLSMFLCRSIHSEDYSKVPKY 941
VIELLGM LSMFLCR +HSEDYSKVPKY
Sbjct: 241 VIELLGMFLSMFLCRRVHSEDYSKVPKY 268
>ref|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos taurus].
Length = 268
Score = 405 bits (1042), Expect = e-113
Identities = 194/268 (72%), Positives = 219/268 (81%), Gaps = 2/268 (0%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MG+ACIKVTKY GAVILGFG+WIL D++SFIS+LQTSSTS KV AY+FI
Sbjct: 1 MGSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
S+GA TMLMGFLGC+GAV EVRCLLG+YFAFL+LILIAQV AGV FYFNMG+LKQEMGSI
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
VT+LI Y +G D+LQEAWDYVQAQV+CCGWVS+ NWTEN LMN T+ T+PCSCK
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSD 180
Query: 684 QNDSSLPLEKGFCHDL--NGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVA 857
++D+ + +KGFC N Q GNNP WPVY EGCMEKVQ WLQENLG+ILGVCVGVA
Sbjct: 181 EDDALMMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVA 240
Query: 858 VIELLGMLLSMFLCRSIHSEDYSKVPKY 941
VIELLGM LSMFLCR +HSEDYSKVPKY
Sbjct: 241 VIELLGMFLSMFLCRRVHSEDYSKVPKY 268
>ref|NP_001039476.1| leukocyte antigen CD37 [Bos taurus].
Length = 280
Score = 169 bits (427), Expect = 5e-42
Identities = 89/274 (32%), Positives = 145/274 (52%), Gaps = 12/274 (4%)
Frame = +3
Query: 156 CIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGA 335
C+ + KY G++I FG+WIL D++SF+S + S L++ + + G
Sbjct: 7 CLSLVKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFMPLQIWSKVLAVSGI 66
Query: 336 FTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTEL 515
TM + LGC+GA+ E RCLLGLYF L+L+ Q+ G+L +LK+++ +V +
Sbjct: 67 LTMGLALLGCVGALKEFRCLLGLYFGTLLLLFATQITLGILISTQRVQLKKKVKDVVQKT 126
Query: 516 IQKYE-EGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTN--TTYPCSCKTRSQ 686
IQ Y + + +E+WDYVQ Q++CCGW S +W P + + + PCSC S
Sbjct: 127 IQNYRTHPEETAAEESWDYVQFQLRCCGWESPQDWFHIPSMRRNESEGDRVPCSCYNSSA 186
Query: 687 NDSSLPLEK---------GFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILG 839
+ S +K + ++ + P +Y +GC + WL NL I+G
Sbjct: 187 TNDSTIFDKISPQFSRLGSLAQPRHNVEVCSVPANSYIYQQGCERNLSNWLTNNLISIVG 246
Query: 840 VCVGVAVIELLGMLLSMFLCRSIHSEDYSKVPKY 941
+C+GV ++EL M LS+FLCR++ Y ++ +Y
Sbjct: 247 ICLGVGLLELSFMTLSIFLCRNL-DHVYDRLARY 279
>ref|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 115 bits (288), Expect = 7e-26
Identities = 76/256 (29%), Positives = 118/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 92 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 149
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E RCLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 150 AIGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKKD 209
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA++ CCG + +W + NT C S
Sbjct: 210 LKEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYKDWFS----VLGENTVPDRCCMENS 265
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
Q C G NN V+ GC EKV W +N ++ V + + +
Sbjct: 266 QG----------C-------GQNNTTL--VWKTGCYEKVTQWFADNKHVLGTVGMCLLIT 306
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 307 QILGMAFSMTLFQHIH 322
>ref|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 115 bits (288), Expect = 7e-26
Identities = 76/256 (29%), Positives = 118/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 92 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 149
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E RCLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 150 AIGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKKD 209
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA++ CCG + +W + NT C S
Sbjct: 210 LKEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYKDWFS----VLGENTVPDRCCMENS 265
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
Q C G NN V+ GC EKV W +N ++ V + + +
Sbjct: 266 QG----------C-------GQNNTTL--VWKTGCYEKVTQWFADNKHVLGTVGMCLLIT 306
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 307 QILGMAFSMTLFQHIH 322
>ref|NP_001095322.1| tetraspanin-4 [Bos taurus].
Length = 238
Score = 110 bits (275), Expect = 2e-24
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C++ KY G ILG G+W+ A + +F + L +S SL A + I
Sbjct: 1 MARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
GAF M +GF+GCIGA+ E +CLL +F L+L+ + + +LF+ K+ +
Sbjct: 59 VTGAFVMAIGFVGCIGAIKENKCLLLTFFVALLLVFLLEACITILFFAYTDKIDRYAQRD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTPGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+ WLQENL + G+C A
Sbjct: 170 ------------CLEFSESCGLHAPGTW--WKAPCYETVKMWLQENLLAVGVFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVRADAY 236
>ref|NP_001069852.1| tetraspanin-7 [Bos taurus].
Length = 249
Score = 108 bits (270), Expect = 8e-24
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 2/242 (0%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G ++L GVW ++IS++ +ST+ Y+ I G ++ G GC
Sbjct: 30 GVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTTIVVFGLFGCFATCRGSPW 86
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
+L LY FL L+ +A++ AG+ + ++K T+ +Q Y D A D+V
Sbjct: 87 MLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN--DERSRAVDHV 144
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCH--DLNGIQG 746
Q + CCG ++ NW+ +P + H P SC ND+ +C+ DL+ +
Sbjct: 145 QLSLSCCGVQNYTNWSTSPYFLEHG---VPSSC---CMNDT-------YCNPQDLHNLTV 191
Query: 747 GNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRSIHSEDYS 926
A V +GC + V ++++ N+GII GV G+A +L+GMLL+ L R I + Y
Sbjct: 192 A----ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYE 247
Query: 927 KV 932
V
Sbjct: 248 MV 249
>ref|NP_001029442.1| tetraspanin-1 [Bos taurus].
Length = 241
Score = 106 bits (265), Expect = 3e-23
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 4/232 (1%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTS----LKVGAYIFISIGAFTMLMGFLGCIGAVN 380
GA +L G+W+ D SF+ + S+S + VG Y I+ GA +GFLGC GA
Sbjct: 22 GAALLAVGIWVSVDGPSFVKIFGPMSSSAMQFVNVG-YFLIAAGAVLFALGFLGCYGAQT 80
Query: 381 EVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEA 560
E +C L +F L+LI IA+VAA V+ + + ++V I+K E G Q +
Sbjct: 81 ESKCALMTFFFILLLIFIAEVAAAVVALVYTTLAENFLTAVVVPNIKK-EYGSQKDFTQV 139
Query: 561 WDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGI 740
W+ A ++CCG+ ++ ++ +P + N T+P C S N+S +
Sbjct: 140 WNSTMAGLKCCGFTNYTDFEGSPYV--RKNGTFPPYCCYDSVNNSFM------------- 184
Query: 741 QGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFL 896
+ NN A + +GC +++ ++ N + GV G+ +EL M++SM+L
Sbjct: 185 EPCNNFTAHNMSVQGCFKQLLYDIRTNAVTVGGVAAGIGGLELAAMIVSMYL 236
>ref|NP_001074389.1| tetraspanin-18 [Bos taurus].
Length = 249
Score = 102 bits (253), Expect = 8e-22
Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 8/263 (3%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY GA +LG G+W++ D + F ++ ++ L GAYI +
Sbjct: 1 MEGDCLSCMKYLMFVFNFFIFLGGACLLGIGIWVMVDPTGFREIV-AANPLLITGAYILL 59
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
++G L+GFLGC GAV E +CLL +F F+++I +A+++A +L + G L +E
Sbjct: 60 AMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRGNLTRE---F 116
Query: 504 VTELIQKYEEGRQDS--LQEAWDYVQAQVQCCG--WVSFYNWTENPRLMNHTNTTYP-CS 668
T+ + K+ +G D+ W+ V CCG + + RL+ + P
Sbjct: 117 FTKELTKHYQGSNDTDVFSATWNSVMITFGCCGVNGPEDFKYASVFRLLTLDSDEVPEAC 176
Query: 669 CKTRSQNDSSLPLEKGFC---HDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILG 839
C+ Q+ + L + C DL + +GC + + + +
Sbjct: 177 CRREPQSRDGVLLSREECLLGRDLF------------LNKQGCYTVILNAFETYVYLAGA 224
Query: 840 VCVGVAVIELLGMLLSMFLCRSI 908
+ +GV IEL M+ +M L R I
Sbjct: 225 LAIGVLAIELFAMIFAMCLFRGI 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,326,394
Number of extensions: 1182070
Number of successful extensions: 8085
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 7957
Number of HSP's successfully gapped: 38
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002993
(1090 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible m... 448 e-126
Alignment gi|XP_541497.2| PREDICTED: similar to Leukocyte antigen CD37 (T... 179 5e-45
Alignment gi|XP_854630.1| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (... 118 1e-26
Alignment gi|XP_854185.1| PREDICTED: similar to Tetraspanin-4 (Tspan-4) (... 109 4e-24
Alignment gi|XP_537996.1| PREDICTED: similar to Tetraspanin-7 (Tspan-7) (... 105 6e-23
Alignment gi|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [... 102 5e-22
Alignment gi|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [... 101 1e-21
Alignment gi|XP_854130.1| PREDICTED: similar to Tetraspanin-18 (Tspan-18)... 100 2e-21
Alignment gi|XP_532594.1| PREDICTED: similar to Tetraspanin-1 (Tspan-1) (... 99 5e-21
Alignment gi|XP_850718.1| PREDICTED: similar to Tetraspanin-5 (Tspan-5) (... 99 9e-21
>ref|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible membrane protein R2)
(C33 antigen) (IA4) (Metastasis suppressor Kangai 1)
(Suppressor of tumorigenicity-6) (Tetraspanin-27)
(Tspan-27) [Canis familiaris].
Length = 455
Score = 448 bits (1152), Expect = e-126
Identities = 223/305 (73%), Positives = 249/305 (81%), Gaps = 2/305 (0%)
Frame = +3
Query: 33 TEPRAARSDANQGASGRRRACSAEQKAEPAGSSRTSRMGAACIKVTKYXXXXXXXXXXXX 212
TEP AA+SDA+ GASGRRRAC AE A+PAGSSRT RMG+ACIKVTKY
Sbjct: 156 TEPGAAQSDAD-GASGRRRACGAEHPAQPAGSSRTGRMGSACIKVTKYFLFLFNLLFFIL 214
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
GAVILGFGVWILADRSSFISVLQTSS SLKVGA +FI +GA TM MGFLGCIGA+ EVRC
Sbjct: 215 GAVILGFGVWILADRSSFISVLQTSSNSLKVGACVFIGVGAVTMFMGFLGCIGAIKEVRC 274
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
LLGLYFAFL+L+LI QVAAGVLFYF+ GKLKQEMGSIV +LIQ Y++G++D LQEAWDYV
Sbjct: 275 LLGLYFAFLLLMLIVQVAAGVLFYFSTGKLKQEMGSIVMKLIQDYKDGQEDRLQEAWDYV 334
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNG--IQG 746
QAQV+CCGW SFYNWT+N LMN TN TYPCSC+ + + D S + KGFC N +
Sbjct: 335 QAQVRCCGWASFYNWTDNAELMNRTNVTYPCSCEDKREADDSFLVRKGFCEAFNSTRTES 394
Query: 747 GNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRSIHSEDYS 926
GNNP+ WP GCM+KVQAWLQEN+GIILGVCVGVAVIELLGMLLS+ LCR IHSEDYS
Sbjct: 395 GNNPEYWP----GCMKKVQAWLQENVGIILGVCVGVAVIELLGMLLSICLCRHIHSEDYS 450
Query: 927 KVPKY 941
KVPKY
Sbjct: 451 KVPKY 455
>ref|XP_541497.2| PREDICTED: similar to Leukocyte antigen CD37 (Tetraspanin-26)
(Tspan-26) isoform 1 [Canis familiaris].
Length = 281
Score = 179 bits (453), Expect = 5e-45
Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 18/281 (6%)
Frame = +3
Query: 153 ACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIG 332
+C+ + KY G++I FG+WIL D++SF+S + S L++ + G
Sbjct: 6 SCLSLIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFIPLQIWSKALAISG 65
Query: 333 AFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTE 512
TM + LGC+GA+ E+RCLLGLYF L+L+ Q+ G+L +L++ + IV E
Sbjct: 66 ILTMGLALLGCVGALKELRCLLGLYFGVLLLLFATQITLGILISTQRMRLERRVKDIVME 125
Query: 513 LIQKYEEGRQDS-LQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTY--PCSCKTRS 683
IQ Y ++S +E+WDYVQ Q++CCGW S +W P L ++ + + PCSC S
Sbjct: 126 TIQNYHSRPEESAAEESWDYVQFQLRCCGWNSPRDWFGIPSLSSNASDVHRVPCSCYNSS 185
Query: 684 QNDSSLPLEK---------------GFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQE 818
+ S EK DL G+ +N +Y EGC + +Q WL
Sbjct: 186 ATNDSAIFEKLSFPQFSRLGPQARPRHSTDLCGVPANSN-----IYSEGCAQNLQKWLHN 240
Query: 819 NLGIILGVCVGVAVIELLGMLLSMFLCRSIHSEDYSKVPKY 941
NL I+G+C+GV ++EL M LS+FLCR++ + Y ++ +Y
Sbjct: 241 NLISIVGICLGVGLLELSFMTLSIFLCRNM-DQVYDRLARY 280
>ref|XP_854630.1| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
[Canis familiaris].
Length = 330
Score = 118 bits (295), Expect = 1e-26
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 16/302 (5%)
Frame = +3
Query: 54 SDANQGASGRRRACSAEQKAEPAGSS----------------RTSRMGAACIKVTKYXXX 185
S ++G S A+Q P GS + M C+ KY
Sbjct: 46 SAGSRGQSRAEAGAKADQYNAPKGSKYVVFYLDLSFVFLLEFKKCNMARGCLCCLKYMMF 105
Query: 186 XXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGC 365
G +LG G+W+ + +F + S SL A + I+IG M+ GFLGC
Sbjct: 106 LFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVIAIGTIVMVTGFLGC 163
Query: 366 IGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQD 545
+GA+ E +CLL +F L++IL+A++ +LF+ M K+ + + E + Y
Sbjct: 164 LGAIKENKCLLLSFFIVLLIILLAELILLILFFVYMDKVNENARKDLKEGLLLYNTENNV 223
Query: 546 SLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCH 725
L+ AW+ +QA+++CCG + +W YP ++ +P C
Sbjct: 224 GLKNAWNIIQAEMRCCGVTDYTDW-------------YPV------LGENMVP--DRCC- 261
Query: 726 DLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRS 905
+ QG P++ GC EKV+ W +N ++ V + + ++++LGM SM L +
Sbjct: 262 -MENSQGCGRNTTTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQH 320
Query: 906 IH 911
IH
Sbjct: 321 IH 322
>ref|XP_854185.1| PREDICTED: similar to Tetraspanin-4 (Tspan-4) (Transmembrane 4
superfamily member 7) (Novel antigen 2) (NAG-2) [Canis
familiaris].
Length = 257
Score = 109 bits (273), Expect = 4e-24
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 3/240 (1%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G ILG G+W+ A + +F + L +S SL A + I G F M +GF+GCIGA+ E +C
Sbjct: 43 GCGILGVGIWLAATQGNF-ATLSSSFPSLSA-ANLLIVTGTFVMAIGFVGCIGAIKEHKC 100
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
LL +F L+L+L+ +V VLF+ K+ + + + + Y L AW +
Sbjct: 101 LLLTFFVTLLLVLLLEVTVTVLFFAYTDKIDRYAQQDLKKGLHLYGTPGNVGLTNAWSII 160
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGIQGGN 752
Q +CCG ++ +W E + T P SC C + + G +
Sbjct: 161 QTDFRCCGVSNYTDWFE-----VYNATRVPDSC----------------CLEFSESCGLH 199
Query: 753 NPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVAVIELLGMLLSMFL-CRSIHSEDY 923
P W + C E V+ WLQENL I G+C A+++LLG+ +M + C+ + ++ Y
Sbjct: 200 APGTW--WKAPCYETVKTWLQENLLAVGIFGLC--TALVQLLGLTFAMTMYCQVVKADTY 255
>ref|XP_537996.1| PREDICTED: similar to Tetraspanin-7 (Tspan-7) (Transmembrane 4
superfamily member 2) (Cell surface glycoprotein A15)
(T-cell acute lymphoblastic leukemia associated antigen
1) (TALLA-1) (Membrane component, X chromosome, surface
marker 1) (CD231 antigen)... [Canis familiaris].
Length = 249
Score = 105 bits (263), Expect = 6e-23
Identities = 69/240 (28%), Positives = 113/240 (47%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G ++L GVW ++IS++ +ST+ Y+ I G ++ G GC
Sbjct: 30 GVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTTIVVFGLFGCFATCRGSPW 86
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
+L LY FL L+ +A++ AG+ + ++K T+ +Q Y D A D+V
Sbjct: 87 MLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN--DERSRAVDHV 144
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGIQGGN 752
Q + CCG ++ NW+ +P + H P SC + + L H+L
Sbjct: 145 QRSLSCCGVQNYTNWSTSPYFLEHG---IPPSCCMNETDCNPQDL-----HNLTVA---- 192
Query: 753 NPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRSIHSEDYSKV 932
A V +GC + V ++++ N+GII GV G+A +L+GMLL+ L R I + Y V
Sbjct: 193 ---ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 249
>ref|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [Canis familiaris].
Length = 259
Score = 102 bits (255), Expect = 5e-22
Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 4/263 (1%)
Frame = +3
Query: 147 GAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFIS 326
G C+K Y G ++ G+W LA +S +IS+L +S + AYI +
Sbjct: 11 GTVCLK---YLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLL--ASGTYLATAYILVV 65
Query: 327 IGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEM-GSI 503
G M+ G LGC E R LL LYF L++I + ++ AG+L Y +L E+ ++
Sbjct: 66 AGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNL 125
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENP--RLMNHTNTTYPCS-CK 674
+ ++Y + + + A D +Q + CCG + +W ++ R P S CK
Sbjct: 126 KDTMTKRYHQPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCK 185
Query: 675 TRSQNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGV 854
T ++ ++ ++ G W + GC+ K++ ++QE+L +I V +G+
Sbjct: 186 TVVPGCG----QRDHASNIYKVEVG-----WWMPGGGCITKLETFIQEHLRVIGAVGIGI 236
Query: 855 AVIELLGMLLSMFLCRSIHSEDY 923
A +++ GM+ + L +S+ E Y
Sbjct: 237 ACVQVFGMIFTCCLYKSLKLEHY 259
>ref|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [Canis familiaris].
Length = 252
Score = 101 bits (251), Expect = 1e-21
Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 4/263 (1%)
Frame = +3
Query: 147 GAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFIS 326
G C+K Y G ++ G+W LA +S +IS+L +S + AYI +
Sbjct: 11 GTVCLK---YLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLL--ASGTYLATAYILVV 65
Query: 327 IGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEM-GSI 503
G M+ G LGC E R LL LYF L++I + ++ AG+L Y +L E+ ++
Sbjct: 66 AGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNL 125
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ ++Y + + + A D +Q + CCG + +W ++ + RS
Sbjct: 126 KDTMTKRYHQPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWI--------------RS 171
Query: 684 QNDSSLPLEKGFCHDLNGIQG-GNNPDAWPVY--HEGCMEKVQAWLQENLGIILGVCVGV 854
+ C + + G G A +Y GC+ K++ ++QE+L +I V +G+
Sbjct: 172 GQAGGRVVPDSCCKTV--VPGCGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGI 229
Query: 855 AVIELLGMLLSMFLCRSIHSEDY 923
A +++ GM+ + L +S+ E Y
Sbjct: 230 ACVQVFGMIFTCCLYKSLKLEHY 252
>ref|XP_854130.1| PREDICTED: similar to Tetraspanin-18 (Tspan-18) [Canis familiaris].
Length = 248
Score = 100 bits (250), Expect = 2e-21
Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 7/262 (2%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY GA +LG GVW++ D + F ++ ++ L GAYI +
Sbjct: 1 MEGDCLSCMKYLMFVFNFFIFLGGACLLGIGVWVMVDPTGFREIV-AANPLLITGAYILL 59
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
++G L+GFLGC GAV E +CLL +F F+++I +A+++A +L + L +E S
Sbjct: 60 AMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTRE--SF 117
Query: 504 VTELIQKYEEGRQ-DSLQEAWDYVQAQVQCCG--WVSFYNWTENPRLMNHTNTTYP-CSC 671
EL + Y+ D W+ V CCG + + RL+ + P C
Sbjct: 118 TKELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFRFASVFRLLTTGSDEVPEACC 177
Query: 672 KTRSQNDSSLPLEKGFC---HDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGV 842
+ Q + L + C DL V +GC + + + + +
Sbjct: 178 RREPQTRDGVLLSREECLLGRDLF------------VNKQGCYTVILNTFETYVYLAGAL 225
Query: 843 CVGVAVIELLGMLLSMFLCRSI 908
+GV IEL M+ +M L R I
Sbjct: 226 AIGVLAIELFAMIFAMCLFRGI 247
>ref|XP_532594.1| PREDICTED: similar to Tetraspanin-1 (Tspan-1) (Tetraspan NET-1)
(Tetraspanin TM4-C) [Canis familiaris].
Length = 307
Score = 99.4 bits (246), Expect = 5e-21
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 4/232 (1%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTS----LKVGAYIFISIGAFTMLMGFLGCIGAVN 380
G +L G+W+ D SF+ + S+S + VG Y I+ GA +GFLGC GA +
Sbjct: 88 GVALLAVGIWVSVDGPSFLKIFGPLSSSAMQFVNVG-YFLIAAGAILFALGFLGCYGAHS 146
Query: 381 EVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEA 560
E +C L ++F L+LI IA+VAA V+ + + +V I K + G Q +
Sbjct: 147 ENKCALMMFFLILLLIFIAEVAAAVVALVYTTMAEHFLTLLVVPAI-KQDYGSQKDFTQV 205
Query: 561 WDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGI 740
W+ A + CCG+ ++ ++ +P + N T+P C + S N ++
Sbjct: 206 WNSTMAGLGCCGFNNYTDFEGSPYFLK--NHTFPPYCCSNSGNGTA-------------T 250
Query: 741 QGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFL 896
+ A +GC ++ L+ N + GV G+ +EL M++SM+L
Sbjct: 251 EACTEERAKDNIVQGCFSQLLYDLRANAVTVGGVAAGIGALELAAMIVSMYL 302
>ref|XP_850718.1| PREDICTED: similar to Tetraspanin-5 (Tspan-5) (Transmembrane 4
superfamily member 9) (Tetraspan NET-4) isoform 2 [Canis
familiaris].
Length = 268
Score = 98.6 bits (244), Expect = 9e-21
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 10/244 (4%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G LG G+W ++ ++ + ++F+ +G ++GF GCIGA+ E
Sbjct: 30 GIAFLGIGLWAWNEKGVLSNISSITDLGGFDPVWLFLVVGGVMFILGFAGCIGALRENTF 89
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
LL + FL +I ++ AGVL + +K ++ + I+ Y + LQ D+
Sbjct: 90 LLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIRAYRD--DIDLQNLIDFT 147
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLE---KGFCHDLNGIQ 743
Q QCCG +W + N + C+ S+ +P K D+ Q
Sbjct: 148 QEYWQCCGAFGADDW--------NLNIYFNCTDSNASRERCGVPFSCCTKDPAEDVINTQ 199
Query: 744 GGNNPDAWP-------VYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCR 902
G + P +Y +GC+ + + WLQ+NL I+ G+ +G+A++++ G+ L+ L
Sbjct: 200 CGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIFGICLAQNLVS 259
Query: 903 SIHS 914
I +
Sbjct: 260 DIEA 263
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,049,459
Number of extensions: 1213023
Number of successful extensions: 8039
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 7923
Number of HSP's successfully gapped: 34
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002993
(1090 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002222.1| CD82 antigen isoform 1 [Homo sapiens]. 413 e-115
Alignment gi|NP_001020015.1| CD82 antigen isoform 2 [Homo sapiens]. 356 2e-98
Alignment gi|NP_001765.1| leukocyte antigen CD37 isoform A [Homo sapiens]. 172 4e-43
Alignment gi|NP_001035120.1| leukocyte antigen CD37 isoform B [Homo sapie... 136 3e-32
Alignment gi|NP_001161792.1| tetraspanin-9 [Homo sapiens]. 117 1e-26
Alignment gi|NP_006666.1| tetraspanin-9 [Homo sapiens]. 117 1e-26
Alignment gi|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens]. 115 7e-26
Alignment gi|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens]. 115 7e-26
Alignment gi|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens]. 115 7e-26
Alignment gi|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens]. 115 7e-26
>ref|NP_002222.1| CD82 antigen isoform 1 [Homo sapiens].
Length = 267
Score = 413 bits (1062), Expect = e-115
Identities = 199/267 (74%), Positives = 223/267 (83%), Gaps = 1/267 (0%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MG+ACIKVTKY GAVILGFGVWILAD+SSFISVLQTSS+SL++GAY+FI
Sbjct: 1 MGSACIKVTKYFLFLFNLIFFILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+GA TMLMGFLGCIGAVNEVRCLLGLYFAFL+LILIAQV AG LFYFNMGKLKQEMG I
Sbjct: 61 GVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMGGI 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
VTELI+ Y R+DSLQ+AWDYVQAQV+CCGWVSFYNWT+N LMN TYPCSC+ +
Sbjct: 121 VTELIRDYNSSREDSLQDAWDYVQAQVKCCGWVSFYNWTDNAELMNRPEVTYPCSCEVKG 180
Query: 684 QNDSSLPLEKGFCH-DLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAV 860
+ D+SL + KGFC N Q GN+P+ WPVY EGCMEKVQAWLQENLGIILGV VGVA+
Sbjct: 181 EEDNSLSVRKGFCEAPGNRTQSGNHPEDWPVYQEGCMEKVQAWLQENLGIILGVGVGVAI 240
Query: 861 IELLGMLLSMFLCRSIHSEDYSKVPKY 941
IELLGM+LS+ LCR +HSEDYSKVPKY
Sbjct: 241 IELLGMVLSICLCRHVHSEDYSKVPKY 267
>ref|NP_001020015.1| CD82 antigen isoform 2 [Homo sapiens].
Length = 242
Score = 356 bits (914), Expect = 2e-98
Identities = 177/267 (66%), Positives = 200/267 (74%), Gaps = 1/267 (0%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MG+ACIKVTKY GAVILGFGVWILAD+SSFISVLQTSS+SL++GAY+FI
Sbjct: 1 MGSACIKVTKYFLFLFNLIFFILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+GA TMLMGFLGCIGAVNEVRCLLGL LKQEMG I
Sbjct: 61 GVGAVTMLMGFLGCIGAVNEVRCLLGL-------------------------LKQEMGGI 95
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
VTELI+ Y R+DSLQ+AWDYVQAQV+CCGWVSFYNWT+N LMN TYPCSC+ +
Sbjct: 96 VTELIRDYNSSREDSLQDAWDYVQAQVKCCGWVSFYNWTDNAELMNRPEVTYPCSCEVKG 155
Query: 684 QNDSSLPLEKGFCH-DLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAV 860
+ D+SL + KGFC N Q GN+P+ WPVY EGCMEKVQAWLQENLGIILGV VGVA+
Sbjct: 156 EEDNSLSVRKGFCEAPGNRTQSGNHPEDWPVYQEGCMEKVQAWLQENLGIILGVGVGVAI 215
Query: 861 IELLGMLLSMFLCRSIHSEDYSKVPKY 941
IELLGM+LS+ LCR +HSEDYSKVPKY
Sbjct: 216 IELLGMVLSICLCRHVHSEDYSKVPKY 242
>ref|NP_001765.1| leukocyte antigen CD37 isoform A [Homo sapiens].
Length = 281
Score = 172 bits (437), Expect = 4e-43
Identities = 94/276 (34%), Positives = 157/276 (56%), Gaps = 13/276 (4%)
Frame = +3
Query: 153 ACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIG 332
+C+ + KY G++I FG+WIL D++SF+S + + L++ + + G
Sbjct: 6 SCLSLIKYFLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLAFVPLQIWSKVLAISG 65
Query: 333 AFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTE 512
FTM + LGC+GA+ E+RCLLGLYF L+L+ Q+ G+L +L++ + +V +
Sbjct: 66 IFTMGIALLGCVGALKELRCLLGLYFGMLLLLFATQITLGILISTQRAQLERSLRDVVEK 125
Query: 513 LIQKYEEGRQD-SLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTY--PCSCKTRS 683
IQKY ++ + +E+WDYVQ Q++CCGW +W + L + + + PCSC S
Sbjct: 126 TIQKYGTNPEETAAEESWDYVQFQLRCCGWHYPQDWFQVLILRGNGSEAHRVPCSCYNLS 185
Query: 684 QNDSSLPLEKGFCHDLNGI----QGGNNPD--AWP----VYHEGCMEKVQAWLQENLGII 833
+ S L+K L+ + + ++ D A P +Y EGC + +Q WL NL I
Sbjct: 186 ATNDSTILDKVILPQLSRLGHLARSRHSADICAVPAESHIYREGCAQGLQKWLHNNLISI 245
Query: 834 LGVCVGVAVIELLGMLLSMFLCRSIHSEDYSKVPKY 941
+G+C+GV ++EL M LS+FLCR++ Y+++ +Y
Sbjct: 246 VGICLGVGLLELGFMTLSIFLCRNL-DHVYNRLARY 280
>ref|NP_001035120.1| leukocyte antigen CD37 isoform B [Homo sapiens].
Length = 213
Score = 136 bits (343), Expect = 3e-32
Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 13/213 (6%)
Frame = +3
Query: 342 MLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQ 521
M + LGC+GA+ E+RCLLGLYF L+L+ Q+ G+L +L++ + +V + IQ
Sbjct: 1 MGIALLGCVGALKELRCLLGLYFGMLLLLFATQITLGILISTQRAQLERSLRDVVEKTIQ 60
Query: 522 KYEEGRQD-SLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTY--PCSCKTRSQND 692
KY ++ + +E+WDYVQ Q++CCGW +W + L + + + PCSC S +
Sbjct: 61 KYGTNPEETAAEESWDYVQFQLRCCGWHYPQDWFQVLILRGNGSEAHRVPCSCYNLSATN 120
Query: 693 SSLPLEKGFCHDLNGI----QGGNNPD--AWP----VYHEGCMEKVQAWLQENLGIILGV 842
S L+K L+ + + ++ D A P +Y EGC + +Q WL NL I+G+
Sbjct: 121 DSTILDKVILPQLSRLGHLARSRHSADICAVPAESHIYREGCAQGLQKWLHNNLISIVGI 180
Query: 843 CVGVAVIELLGMLLSMFLCRSIHSEDYSKVPKY 941
C+GV ++EL M LS+FLCR++ Y+++ +Y
Sbjct: 181 CLGVGLLELGFMTLSIFLCRNL-DHVYNRLARY 212
>ref|NP_001161792.1| tetraspanin-9 [Homo sapiens].
Length = 239
Score = 117 bits (294), Expect = 1e-26
Identities = 72/256 (28%), Positives = 120/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E +CLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 59 AIGTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA+++CCG + +W P L +T C
Sbjct: 119 LKEGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTVPDRCC------ 170
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ QG P++ GC EKV+ W +N ++ V + + ++
Sbjct: 171 ---------------MENSQGCGRNATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIM 215
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 216 QILGMAFSMTLFQHIH 231
>ref|NP_006666.1| tetraspanin-9 [Homo sapiens].
Length = 239
Score = 117 bits (294), Expect = 1e-26
Identities = 72/256 (28%), Positives = 120/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E +CLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 59 AIGTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA+++CCG + +W P L +T C
Sbjct: 119 LKEGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTVPDRCC------ 170
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ QG P++ GC EKV+ W +N ++ V + + ++
Sbjct: 171 ---------------MENSQGCGRNATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIM 215
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 216 QILGMAFSMTLFQHIH 231
>ref|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 115 bits (288), Expect = 7e-26
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M AC++ KY G +LG G+W+ A + SF + L +S SL A + I
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
GAF M +GF+GC+GA+ E +CLL +F L+L+ + + +LF+ K+ +
Sbjct: 59 ITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+ WLQENL I G+C A
Sbjct: 170 ------------CLEFSESCGLHAPGTW--WKAPCYETVKVWLQENLLAVGIFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVKADTY 236
>ref|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 115 bits (288), Expect = 7e-26
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M AC++ KY G +LG G+W+ A + SF + L +S SL A + I
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
GAF M +GF+GC+GA+ E +CLL +F L+L+ + + +LF+ K+ +
Sbjct: 59 ITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+ WLQENL I G+C A
Sbjct: 170 ------------CLEFSESCGLHAPGTW--WKAPCYETVKVWLQENLLAVGIFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVKADTY 236
>ref|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 115 bits (288), Expect = 7e-26
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M AC++ KY G +LG G+W+ A + SF + L +S SL A + I
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
GAF M +GF+GC+GA+ E +CLL +F L+L+ + + +LF+ K+ +
Sbjct: 59 ITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+ WLQENL I G+C A
Sbjct: 170 ------------CLEFSESCGLHAPGTW--WKAPCYETVKVWLQENLLAVGIFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVKADTY 236
>ref|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 115 bits (288), Expect = 7e-26
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M AC++ KY G +LG G+W+ A + SF + L +S SL A + I
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
GAF M +GF+GC+GA+ E +CLL +F L+L+ + + +LF+ K+ +
Sbjct: 59 ITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+ WLQENL I G+C A
Sbjct: 170 ------------CLEFSESCGLHAPGTW--WKAPCYETVKVWLQENLLAVGIFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVKADTY 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,019,160
Number of extensions: 1178695
Number of successful extensions: 7547
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 7392
Number of HSP's successfully gapped: 44
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002993
(1090 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031682.1| CD82 antigen isoform 1 [Mus musculus]. 378 e-105
Alignment gi|NP_001129527.1| CD82 antigen isoform 2 [Mus musculus]. 378 e-105
Alignment gi|NP_031671.1| leukocyte antigen CD37 [Mus musculus]. 167 1e-41
Alignment gi|NP_780623.1| tetraspanin-9 [Mus musculus]. 119 5e-27
Alignment gi|NP_444312.1| tetraspanin-4 [Mus musculus]. 113 2e-25
Alignment gi|NP_062608.2| tetraspanin-7 [Mus musculus]. 108 6e-24
Alignment gi|NP_001104520.1| CD151 antigen [Mus musculus]. 108 9e-24
Alignment gi|NP_001104519.1| CD151 antigen [Mus musculus]. 108 9e-24
Alignment gi|NP_033972.2| CD151 antigen [Mus musculus]. 108 9e-24
Alignment gi|NP_598442.1| tetraspanin-1 [Mus musculus]. 107 2e-23
>ref|NP_031682.1| CD82 antigen isoform 1 [Mus musculus].
Length = 266
Score = 378 bits (971), Expect = e-105
Identities = 181/266 (68%), Positives = 207/266 (77%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MGA C+KVTKY GAVILGFGVWILAD++SFISVLQTSS+SL+VGAY+FI
Sbjct: 1 MGAGCVKVTKYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+GA T++MGFLGCIGAVNEVRCLLGLYF FL+LILIAQV GVLFYFN KLK+EMG+
Sbjct: 61 GVGAITIVMGFLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNT 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
V ++I+ Y S +EAWDYVQAQV+CCGWVS YNWTEN LM T TTYPCSC+
Sbjct: 121 VMDIIRNYTANATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIK 180
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ D+ L ++KGFC N NNP+ WPV EGCMEK QAWLQEN GI+LGVC GVAVI
Sbjct: 181 EEDNQLIVKKGFCEADNSTVSENNPEDWPVNTEGCMEKAQAWLQENFGILLGVCAGVAVI 240
Query: 864 ELLGMLLSMFLCRSIHSEDYSKVPKY 941
ELLG+ LS+ LCR IHSEDYSKVPKY
Sbjct: 241 ELLGLFLSICLCRYIHSEDYSKVPKY 266
>ref|NP_001129527.1| CD82 antigen isoform 2 [Mus musculus].
Length = 266
Score = 378 bits (971), Expect = e-105
Identities = 181/266 (68%), Positives = 207/266 (77%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MGA C+KVTKY GAVILGFGVWILAD++SFISVLQTSS+SL+VGAY+FI
Sbjct: 1 MGAGCVKVTKYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+GA T++MGFLGCIGAVNEVRCLLGLYF FL+LILIAQV GVLFYFN KLK+EMG+
Sbjct: 61 GVGAITIVMGFLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNT 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
V ++I+ Y S +EAWDYVQAQV+CCGWVS YNWTEN LM T TTYPCSC+
Sbjct: 121 VMDIIRNYTANATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIK 180
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ D+ L ++KGFC N NNP+ WPV EGCMEK QAWLQEN GI+LGVC GVAVI
Sbjct: 181 EEDNQLIVKKGFCEADNSTVSENNPEDWPVNTEGCMEKAQAWLQENFGILLGVCAGVAVI 240
Query: 864 ELLGMLLSMFLCRSIHSEDYSKVPKY 941
ELLG+ LS+ LCR IHSEDYSKVPKY
Sbjct: 241 ELLGLFLSICLCRYIHSEDYSKVPKY 266
>ref|NP_031671.1| leukocyte antigen CD37 [Mus musculus].
Length = 281
Score = 167 bits (424), Expect = 1e-41
Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 13/276 (4%)
Frame = +3
Query: 153 ACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIG 332
+C+ + KY G +I FG WIL D++SF+S + S L+ + + G
Sbjct: 6 SCLSLIKYFLFVFNLFFFVLGGLIFCFGTWILIDKTSFVSFVGLSFVPLQTWSKVLAVSG 65
Query: 333 AFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTE 512
TM + LGC+GA+ E+RCLLGLYF L+L+ Q+ G+L +L++ + +V
Sbjct: 66 VLTMALALLGCVGALKELRCLLGLYFGMLLLLFATQITLGILISTQRVRLERRVQELVLR 125
Query: 513 LIQKYEEGRQD-SLQEAWDYVQAQVQCCGWVSFYNWTENPRL-MNHTNTTY-PCSCKTRS 683
IQ Y + + +E+WDY Q Q++CCGW S +W + L N + + PCSC +
Sbjct: 126 TIQSYRTNPDETAAEESWDYAQFQLRCCGWQSPRDWNKAQMLKANESEEPFVPCSCYNST 185
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNN----------PDAWPVYHEGCMEKVQAWLQENLGII 833
+ S +K F L+ + P +Y EGC + +Q WL N+ I
Sbjct: 186 ATNDSTVFDKLFFSQLSRLGPRAKLRQTADICALPAKAHIYREGCAQSLQKWLHNNIISI 245
Query: 834 LGVCVGVAVIELLGMLLSMFLCRSIHSEDYSKVPKY 941
+G+C+GV ++EL M LS+FLCR++ Y ++ +Y
Sbjct: 246 VGICLGVGLLELGFMTLSIFLCRNL-DHVYDRLARY 280
>ref|NP_780623.1| tetraspanin-9 [Mus musculus].
Length = 239
Score = 119 bits (297), Expect = 5e-27
Identities = 72/256 (28%), Positives = 120/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 1 MARGCLCCLKYTMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E +CLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 59 AIGTIVMVTGFLGCLGAIKENKCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKQD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA+++CCG + +W P L +T C
Sbjct: 119 LKEGLLLYNTENNVGLKNAWNIIQAEMRCCGVTDYTDW--YPVLGENTVPDRCC------ 170
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ QG P++ GC EKV+ W +N ++ V + + ++
Sbjct: 171 ---------------MENSQGCGRNSTTPLWRTGCYEKVKLWFDDNKHVLGTVGMCILIM 215
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 216 QILGMAFSMTLFQHIH 231
>ref|NP_444312.1| tetraspanin-4 [Mus musculus].
Length = 238
Score = 113 bits (283), Expect = 2e-25
Identities = 75/263 (28%), Positives = 122/263 (46%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C++ KY G +LG G+W+ A + +F + L +S SL A + I
Sbjct: 1 MARGCLQGVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGNF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
G F M +GF+GCIGA+ E +CLL +F L+L+ + + VLF+ K+
Sbjct: 59 VTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+AWLQENL I G+C A
Sbjct: 170 ------------CLEFSDSCGLHEPGTW--WKSPCYETVKAWLQENLLAVGIFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVKADTY 236
>ref|NP_062608.2| tetraspanin-7 [Mus musculus].
Length = 249
Score = 108 bits (271), Expect = 6e-24
Identities = 70/240 (29%), Positives = 115/240 (47%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G ++L GVW ++IS++ +ST+ Y+ I G ++ G GC
Sbjct: 30 GVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTTIVVFGLFGCFATCRGSPW 86
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
+L LY FL L+ +A++ AG+ + ++K T+ +Q Y D A D+V
Sbjct: 87 MLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN--DERSRAVDHV 144
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGIQGGN 752
Q + CCG ++ NW+ +P ++H P SC + + L L H+L
Sbjct: 145 QRSLSCCGVQNYTNWSSSPYFLDHG---IPPSCCMNETDCNPLDL-----HNLTVA---- 192
Query: 753 NPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRSIHSEDYSKV 932
A V +GC + V ++++ N+GII GV G+A +L+GMLL+ L R I + Y V
Sbjct: 193 ---ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 249
>ref|NP_001104520.1| CD151 antigen [Mus musculus].
Length = 253
Score = 108 bits (269), Expect = 9e-24
Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 4/270 (1%)
Frame = +3
Query: 126 SSRTSRMGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKV 305
+ + + G C+K Y G ++ G+W LA +S +IS+L SST L
Sbjct: 5 NEKKATCGTVCLK---YLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLL-ASSTYLAT 60
Query: 306 GAYIFISIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLK 485
AYI + G M+ G LGC E R LL LYF L++I + ++ AG+L Y +L
Sbjct: 61 -AYILVVAGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLN 119
Query: 486 QEM-GSIVTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYP 662
E+ ++ ++++Y + + + A D +Q + CCG + +W ++ +
Sbjct: 120 TELKENLKDTMVKRYHQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWI--------- 170
Query: 663 CSCKTRSQNDSSLPLEKGFCHDLNGIQG-GNNPDAWPVY--HEGCMEKVQAWLQENLGII 833
RS S + C + + G G A +Y GC+ K++ ++QE+L +I
Sbjct: 171 -----RSGEADSRVVPDSCCKTM--VAGCGKRDHASNIYKVEGGCITKLETFIQEHLRVI 223
Query: 834 LGVCVGVAVIELLGMLLSMFLCRSIHSEDY 923
V +G+A +++ GM+ + L RS+ E Y
Sbjct: 224 GAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_001104519.1| CD151 antigen [Mus musculus].
Length = 253
Score = 108 bits (269), Expect = 9e-24
Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 4/270 (1%)
Frame = +3
Query: 126 SSRTSRMGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKV 305
+ + + G C+K Y G ++ G+W LA +S +IS+L SST L
Sbjct: 5 NEKKATCGTVCLK---YLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLL-ASSTYLAT 60
Query: 306 GAYIFISIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLK 485
AYI + G M+ G LGC E R LL LYF L++I + ++ AG+L Y +L
Sbjct: 61 -AYILVVAGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLN 119
Query: 486 QEM-GSIVTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYP 662
E+ ++ ++++Y + + + A D +Q + CCG + +W ++ +
Sbjct: 120 TELKENLKDTMVKRYHQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWI--------- 170
Query: 663 CSCKTRSQNDSSLPLEKGFCHDLNGIQG-GNNPDAWPVY--HEGCMEKVQAWLQENLGII 833
RS S + C + + G G A +Y GC+ K++ ++QE+L +I
Sbjct: 171 -----RSGEADSRVVPDSCCKTM--VAGCGKRDHASNIYKVEGGCITKLETFIQEHLRVI 223
Query: 834 LGVCVGVAVIELLGMLLSMFLCRSIHSEDY 923
V +G+A +++ GM+ + L RS+ E Y
Sbjct: 224 GAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_033972.2| CD151 antigen [Mus musculus].
Length = 253
Score = 108 bits (269), Expect = 9e-24
Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 4/270 (1%)
Frame = +3
Query: 126 SSRTSRMGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKV 305
+ + + G C+K Y G ++ G+W LA +S +IS+L SST L
Sbjct: 5 NEKKATCGTVCLK---YLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLL-ASSTYLAT 60
Query: 306 GAYIFISIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLK 485
AYI + G M+ G LGC E R LL LYF L++I + ++ AG+L Y +L
Sbjct: 61 -AYILVVAGVVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLN 119
Query: 486 QEM-GSIVTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYP 662
E+ ++ ++++Y + + + A D +Q + CCG + +W ++ +
Sbjct: 120 TELKENLKDTMVKRYHQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWI--------- 170
Query: 663 CSCKTRSQNDSSLPLEKGFCHDLNGIQG-GNNPDAWPVY--HEGCMEKVQAWLQENLGII 833
RS S + C + + G G A +Y GC+ K++ ++QE+L +I
Sbjct: 171 -----RSGEADSRVVPDSCCKTM--VAGCGKRDHASNIYKVEGGCITKLETFIQEHLRVI 223
Query: 834 LGVCVGVAVIELLGMLLSMFLCRSIHSEDY 923
V +G+A +++ GM+ + L RS+ E Y
Sbjct: 224 GAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_598442.1| tetraspanin-1 [Mus musculus].
Length = 240
Score = 107 bits (267), Expect = 2e-23
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 5/252 (1%)
Frame = +3
Query: 156 CIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTS----LKVGAYIFI 323
C K K GA +L G+W+ D +SF+ V + S+S + VG Y I
Sbjct: 3 CFKFIKVMMFLFNLLIFLCGAALLAVGIWVSVDGTSFLKVFGSLSSSAMQFVNVG-YFLI 61
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+ GA ++GFLGC GA +E +C+L ++F+ L++I IA++A V+ +Q + +
Sbjct: 62 AAGAVLFILGFLGCYGAHSENKCVLMMFFSILLIIFIAEIAGAVVALVYTTLAEQFLTLL 121
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTE-NPRLMNHTNTTYPCSCKTR 680
V I+K + G Q + W+ ++ CCG F N+T+ N N +P C
Sbjct: 122 VVPAIEK-DYGYQTDFTQVWNTTMEELHCCG---FNNYTDFNASRFVKENKVFPPPCCAN 177
Query: 681 SQNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAV 860
N + P A + +GC +++ ++ N + GV VGVA
Sbjct: 178 PGNHTVEPC--------------TEEKAKSMKVQGCFKEILHRIRANAVTVGGVAVGVAA 223
Query: 861 IELLGMLLSMFL 896
+EL M++SM+L
Sbjct: 224 LELAAMVVSMYL 235
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,253,294
Number of extensions: 969597
Number of successful extensions: 6097
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 5963
Number of HSP's successfully gapped: 32
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002993
(1090 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138690.1| CD82 antigen [Sus scrofa]. 520 e-148
Alignment gi|NP_001070694.1| tetraspanin-9 [Sus scrofa]. 119 2e-27
Alignment gi|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa]. 119 3e-27
Alignment gi|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa]. 110 1e-24
Alignment gi|XP_003135059.1| PREDICTED: tetraspanin-7-like [Sus scrofa]. 105 3e-23
Alignment gi|XP_001929225.1| PREDICTED: leukocyte surface antigen CD53 [S... 102 5e-22
Alignment gi|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrof... 102 5e-22
Alignment gi|NP_999171.1| CD9 antigen [Sus scrofa]. 100 2e-21
Alignment gi|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa]. 99 5e-21
Alignment gi|XP_003355649.1| PREDICTED: CD9 antigen-like [Sus scrofa]. 96 3e-20
>ref|NP_001138690.1| CD82 antigen [Sus scrofa].
Length = 266
Score = 520 bits (1338), Expect = e-148
Identities = 254/266 (95%), Positives = 254/266 (95%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MGAACIKVTKY GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI
Sbjct: 1 MGAACIKVTKYFLFLFNLLFFVLGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 60
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI
Sbjct: 61 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 120
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS
Sbjct: 121 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 180
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI
Sbjct: 181 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 240
Query: 864 ELLGMLLSMFLCRSIHSEDYSKVPKY 941
ELLGMLLSMFLCRSIHSEDYSKVPKY
Sbjct: 241 ELLGMLLSMFLCRSIHSEDYSKVPKY 266
>ref|NP_001070694.1| tetraspanin-9 [Sus scrofa].
Length = 239
Score = 119 bits (299), Expect = 2e-27
Identities = 73/256 (28%), Positives = 119/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E RCLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 59 AIGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA++ CCG + +W P L +T C
Sbjct: 119 LKEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYTDW--YPVLGENTVPDRCC------ 170
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ QG P++ GC EKV+ W +N ++ V + + ++
Sbjct: 171 ---------------MENSQGCGRNSTTPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIM 215
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 216 QILGMAFSMTLFQHIH 231
>ref|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa].
Length = 239
Score = 119 bits (298), Expect = 3e-27
Identities = 73/256 (28%), Positives = 119/256 (46%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C+ KY G +LG G+W+ + +F + S SL A + I
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNF-ATFSPSFPSLSA-ANLVI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+IG M+ GFLGC+GA+ E RCLL +F L++IL+A++ +LF+ M K+ +
Sbjct: 59 AIGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ E + Y L+ AW+ +QA++ CCG + +W P L +T C
Sbjct: 119 LKEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYTDW--YPVLGENTVPDRCC------ 170
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
+ QG P++ GC EKV+ W +N ++ V + + ++
Sbjct: 171 ---------------MENSQGCGRNSTTPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIM 215
Query: 864 ELLGMLLSMFLCRSIH 911
++LGM SM L + IH
Sbjct: 216 QVLGMAFSMTLFQHIH 231
>ref|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa].
Length = 238
Score = 110 bits (275), Expect = 1e-24
Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 3/263 (1%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
M C++ KY G ILG G+W+ A + +F + L +S SL A + I
Sbjct: 1 MARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNF-ATLSSSFPSLSA-ANLLI 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+ G M +GF+GCIGA+ E RCLL +F L+L+ + + VLF+ K+ +
Sbjct: 59 ATGTLVMAIGFVGCIGAIKENRCLLLTFFVVLLLVFLLEATVAVLFFTYTDKIDRYAQRD 118
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ + + Y L AW +Q +CCG ++ +W E + T P SC
Sbjct: 119 LKKGLHLYGTPGNVGLTNAWSIIQTDFRCCGVSNYTDWFE-----VYNATRVPDSC---- 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGI--ILGVCVGVA 857
C + + G + P W + C E V+ WLQENL + G+C A
Sbjct: 170 ------------CLEFSESCGLHAPGTW--WKAPCYETVKMWLQENLLAVGVFGLC--TA 213
Query: 858 VIELLGMLLSMFL-CRSIHSEDY 923
++++LG+ +M + C+ + ++ Y
Sbjct: 214 LVQILGLTFAMTMYCQVVKADAY 236
>ref|XP_003135059.1| PREDICTED: tetraspanin-7-like [Sus scrofa].
Length = 249
Score = 105 bits (263), Expect = 3e-23
Identities = 69/240 (28%), Positives = 113/240 (47%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G ++L GVW ++IS++ +ST+ Y+ I G ++ G GC
Sbjct: 30 GVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTTIVVFGLFGCFATCRGSPW 86
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
+L LY FL L+ +A++ AG+ + ++K T+ +Q Y D A D+V
Sbjct: 87 MLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN--DERSRAVDHV 144
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGIQGGN 752
Q + CCG ++ NW+ +P + H P SC + + L H+L
Sbjct: 145 QRSLSCCGVQNYTNWSTSPYFLEHG---IPPSCCMNETDCNPQDL-----HNLTVA---- 192
Query: 753 NPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRSIHSEDYSKV 932
A V +GC + V ++++ N+GII GV G+A +L+GMLL+ L R I + Y V
Sbjct: 193 ---ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 249
>ref|XP_001929225.1| PREDICTED: leukocyte surface antigen CD53 [Sus scrofa].
Length = 219
Score = 102 bits (253), Expect = 5e-22
Identities = 71/251 (28%), Positives = 111/251 (44%)
Frame = +3
Query: 144 MGAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
MG + +K+ KY G ILGFG+++L VL SL +G + I
Sbjct: 1 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHND--FGVLFHKLPSLTLGNVLII 58
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
+G+ M++ FLGC+G++ E +CLL +F L++IL+A+V +L + KL +
Sbjct: 59 -VGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEPKLNVYVAEG 117
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+T+ I +Y +S + AWD +Q +QCCG +W P P SC T S
Sbjct: 118 LTDSIHRYHS--DNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSCPTDS 165
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
Q +GC K + W N I + + V VI
Sbjct: 166 Q------------------------------VKGCFVKAKLWFHSNFLYIGIITICVCVI 195
Query: 864 ELLGMLLSMFL 896
++LGM ++ L
Sbjct: 196 QVLGMSFALTL 206
>ref|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrofa].
Length = 253
Score = 102 bits (253), Expect = 5e-22
Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 4/263 (1%)
Frame = +3
Query: 147 GAACIKVT-KYXXXXXXXXXXXXGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 323
GA C + KY G ++ G+W LA +S +IS+L +S + AYI +
Sbjct: 8 GAPCGTICLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLL--ASGTYLATAYILV 65
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEM-GS 500
G M+ G LGC E R LL LYF L+LI + ++ AGVL Y +L E+ +
Sbjct: 66 VAGIVVMVTGVLGCCATFKERRNLLRLYFILLLLIFLLEIIAGVLAYVYYQQLSAELKAN 125
Query: 501 IVTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTR 680
+ L ++Y + + + A D +Q + CCG + +W ++ +++ R
Sbjct: 126 LKDTLSKRYRQPGHEGVTSATDKLQQEFHCCGSNNSQDWRDSEWILSG-------EAGDR 178
Query: 681 SQNDSSLPLEKGFCHDLNGIQGGNNPDAWPVY--HEGCMEKVQAWLQENLGIILGVCVGV 854
DS C G A +Y GC+ +++ +++E+L II V +G+
Sbjct: 179 VVPDSCCKTVVAGC--------GRRDHASNIYKVEGGCITRLETFIREHLRIIGAVGIGI 230
Query: 855 AVIELLGMLLSMFLCRSIHSEDY 923
A +++ GM+ + L +S+ E Y
Sbjct: 231 ACVQVFGMIFTCCLYKSLKLEHY 253
>ref|NP_999171.1| CD9 antigen [Sus scrofa].
Length = 226
Score = 99.8 bits (247), Expect = 2e-21
Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 1/255 (0%)
Frame = +3
Query: 147 GAACIKVTKYXXXXXXXXXXXXGAVILGFGVWILAD-RSSFISVLQTSSTSLKVGAYIFI 323
G CIK Y G +L G+W+ D ++ I + +++S G YI I
Sbjct: 6 GTKCIK---YLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILI 62
Query: 324 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 503
GA M++GFLGC GAV E +C+LGL+F FL++I ++AA + Y + ++ +E+
Sbjct: 63 GAGALMMVVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDQVIKEVQDF 122
Query: 504 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 683
+ K +G+ D +E + + CCG LM C R
Sbjct: 123 YRDTYNKL-KGKDDPQRETLKAIHYALDCCG------------LMGEVEQLLADICPQRD 169
Query: 684 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 863
SSLP++ C E ++ Q II V +G+AV+
Sbjct: 170 VL-SSLPMKP------------------------CPEAIKEVFQNKFHIIGAVGIGIAVV 204
Query: 864 ELLGMLLSMFLCRSI 908
+ GM+ SM LC +I
Sbjct: 205 MIFGMIFSMILCCAI 219
>ref|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa].
Length = 268
Score = 98.6 bits (244), Expect = 5e-21
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 10/244 (4%)
Frame = +3
Query: 213 GAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVRC 392
G LG G+W ++ ++ + ++F+ +G ++GF GCIGA+ E
Sbjct: 30 GIAFLGIGLWAWNEKGVLSNISSITDLGGFDPVWLFLVVGGVMFILGFAGCIGALRENTF 89
Query: 393 LLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDYV 572
LL + FL +I ++ AGVL + +K ++ + I+ Y + LQ D+
Sbjct: 90 LLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIRAYRD--DIDLQNLIDFT 147
Query: 573 QAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLE---KGFCHDLNGIQ 743
Q QCCG +W + N + C+ S+ +P K D+ Q
Sbjct: 148 QEYWQCCGAFGADDW--------NLNIYFNCTDSNASRERCGVPFSCCTKDPAEDVINTQ 199
Query: 744 GGNNPDAWP-------VYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCR 902
G + P +Y +GC+ + + WLQ+NL I+ G+ +G+A++++ G+ L+ L
Sbjct: 200 CGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIFGICLAQNLVS 259
Query: 903 SIHS 914
I +
Sbjct: 260 DIEA 263
>ref|XP_003355649.1| PREDICTED: CD9 antigen-like [Sus scrofa].
Length = 242
Score = 96.3 bits (238), Expect = 3e-20
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)
Frame = +3
Query: 213 GAVILGFGVWILAD-RSSFISVLQTSSTSLKVGAYIFISIGAFTMLMGFLGCIGAVNEVR 389
G +L G+W+ D ++ I + +++S G YI I GA M++GFLGC GAV E +
Sbjct: 41 GIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGALMMVVGFLGCCGAVQESQ 100
Query: 390 CLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYEEGRQDSLQEAWDY 569
C+LGL+F FL++I ++AA + Y + ++ +E+ + K +G+ D +E
Sbjct: 101 CMLGLFFGFLLVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTYNKL-KGKDDPQRETLKA 159
Query: 570 VQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLEKGFCHDLNGIQGG 749
+ + CCG LM C + SSLP++
Sbjct: 160 IHYALDCCG------------LMGGVEQLLADICPQKDVL-SSLPMKP------------ 194
Query: 750 NNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLSMFLCRSI 908
C E ++ Q II V +G+AV+ + GM+ SM LC +I
Sbjct: 195 ------------CPEAIKEVFQNKFHIIGAVGIGIAVVMIFGMIFSMILCCAI 235
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,752,962
Number of extensions: 765783
Number of successful extensions: 5066
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4979
Number of HSP's successfully gapped: 29
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002993
(1090 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 406 e-110
>Sscrofa_Chr02
|| Length = 162569375
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 579 caggtgcagtgctgcggctgggtcagcttctacaactggacagaaaaccccaggctcatg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19262148 caggtgcagtgctgcggctgggtcagcttctacaactggacagaaaaccccaggctcatg 19262207
Query: 639 aatcacaccaacaccacctacccctgctcctgcaagacaaggagccagaatgacagcagc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19262208 aatcacaccaacaccacctacccctgctcctgcaagacaaggagccagaatgacagcagc 19262267
Query: 699 ctcccactggagaagggtttctgccacgacctcaacggaatccagggtggcaacaacccc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19262268 ctcccactggagaagggtttctgccacgacctcaacggaatccagggtggcaacaacccc 19262327
Query: 759 gatgcctggcccgtgtaccacgagg 783
|||||||||||||||||||||||||
Sbjct: 19262328 gatgcctggcccgtgtaccacgagg 19262352
Score = 361 bits (182), Expect = 5e-97
Identities = 222/229 (96%), Gaps = 5/229 (2%)
Strand = Plus / Plus
Query: 865 agctcctggggatgctcctgtccatgttcttgtgccgcagcatccactctgaagactaca 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19263060 agctcctggggatgctcctgtccatgttcttgtgccgcagcatccactctgaagactaca 19263119
Query: 925 gcaaggtccccaagtactgaggcggctgctgtccccacctccctgcccgtcccccaa-ct 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 19263120 gcaaggtccccaagtactgaggcggctgctgtccccacctccctgcccgtcccccaacct 19263179
Query: 984 cagggcccgcagggctctccctggcatcctcctcca-gcctggctccca-ctcactg-cn 1040
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
Sbjct: 19263180 cagggcccgcagggctctccctggcatcctcctccaggcctgcctcccacctcactgcca 19263239
Query: 1041 agagtggtggcaa-aagcgggggcgctttctggggcccggacccctctc 1088
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 19263240 agagtggtggcaagaagcgggggcgctttctggggcccggacccctctc 19263288
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 280 agacctcctccacctcgctcaaggtgggagcctacatcttcatcagcataggggccttca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19249749 agacctcctccacctcgctcaaggtgggagcctacatcttcatcagcataggggccttca 19249808
Query: 340 ccatgctcatgggcttcctgggctgcattggtgccgtcaatgaggtccgctgcctgctgg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19249809 ccatgctcatgggcttcctgggctgcattggtgccgtcaatgaggtccgctgcctgctgg 19249868
Query: 400 ggctg 404
|||||
Sbjct: 19249869 ggctg 19249873
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 2 agacgaccgccgggagggggacgaccaagagaccgaacccagggctgcgcggtcagacgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19376830 agacgaccgccgggagggggacgaccaagagaccgaacccagggctgcgcggtcagacgc 19376771
Query: 62 taaccagggcgcgagcgggagacgccgggcttgcagcgccgagcaaaaagcagagccagc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19376770 taaccagggcgcgagcgggagacgccgggcttgcagcgccgagcaaaaagcagagccagc 19376711
Query: 122 agg 124
|||
Sbjct: 19376710 agg 19376708
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 478 agctgaagcaggagatgggcagcatcgtgacggagctcattcagaagtacgaggagggtc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19259081 agctgaagcaggagatgggcagcatcgtgacggagctcattcagaagtacgaggagggtc 19259140
Query: 538 gccaggacagcttacaggaggcctgggactacgtgcaggctcaggtg 584
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19259141 gccaggacagcttacaggaggcctgggactacgtgcaggctcaggtg 19259187
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 781 agggctgcatggagaaggtgcaggcctggctgcaggagaacctgggcatcatccttggcg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19262653 agggctgcatggagaaggtgcaggcctggctgcaggagaacctgggcatcatccttggcg 19262712
Query: 841 tgtgtgtgggcgtcgctgtcatcgag 866
||||||||||||||||||||||||||
Sbjct: 19262713 tgtgtgtgggcgtcgctgtcatcgag 19262738
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 404 gtactttgccttcctggtcctgatcctcatcgcccaggtggctgctggggtcctcttcta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19250012 gtactttgccttcctggtcctgatcctcatcgcccaggtggctgctggggtcctcttcta 19250071
Query: 464 cttcaacatgggcaag 479
||||||||||||||||
Sbjct: 19250072 cttcaacatgggcaag 19250087
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 207 gtcctgggcgcggtgattctgggcttcggggtgtggatcctggccgacaggagcagcttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19344140 gtcctgggcgcggtgattctgggcttcggggtgtggatcctggccgacaggagcagcttc 19344081
Query: 267 atctctgtcctgc 279
|||||||||||||
Sbjct: 19344080 atctctgtcctgc 19344068
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,784,794
Number of extensions: 299
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 8
Length of query: 1090
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1069
Effective length of database: 2,808,413,156
Effective search space: 3002193663764
Effective search space used: 3002193663764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)