Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002995
(1198 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098971.1| ubiquitin domain-containing protein UBFD1 [B... 565 e-161
>ref|NP_001098971.1| ubiquitin domain-containing protein UBFD1 [Bos taurus].
Length = 306
Score = 565 bits (1457), Expect = e-161
Identities = 283/309 (91%), Positives = 285/309 (92%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXXDSCAAPGSLQPAPAQ 204
MAAAGAPDGMEEPGMD R LNCVEAE DSCAA G+LQPAPAQ
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETEAPA---RSLNCVEAEAAAGAAAEDSCAARGNLQPAPAQ 57
Query: 205 PPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL 384
PPGD AAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL
Sbjct: 58 PPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL 117
Query: 385 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK 564
PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK
Sbjct: 118 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK 177
Query: 565 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQL 744
KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLP +PLSGMYNKSGGKVRLTFKLEQDQL
Sbjct: 178 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPAVPLSGMYNKSGGKVRLTFKLEQDQL 237
Query: 745 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD 924
WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD
Sbjct: 238 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD 297
Query: 925 TVLGKWQYF 951
TVLGKWQYF
Sbjct: 298 TVLGKWQYF 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,068,334
Number of extensions: 1051646
Number of successful extensions: 4071
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4048
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002995
(1198 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536933.1| PREDICTED: similar to ubiquitin-binding protein... 569 e-162
Alignment gi|XP_861234.1| PREDICTED: similar to ubiquitin-binding protein... 489 e-138
Alignment gi|XP_861208.1| PREDICTED: similar to ubiquitin-binding protein... 432 e-121
Alignment gi|XP_861174.1| PREDICTED: similar to ubiquitin-binding protein... 320 2e-87
Alignment gi|XP_856287.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 50 6e-06
Alignment gi|XP_856248.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 50 6e-06
Alignment gi|XP_856207.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 50 6e-06
Alignment gi|XP_856160.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 50 6e-06
Alignment gi|XP_537306.2| PREDICTED: similar to Ubiquitin carboxyl-termin... 50 6e-06
>ref|XP_536933.1| PREDICTED: similar to ubiquitin-binding protein homolog isoform 1
[Canis familiaris].
Length = 310
Score = 569 bits (1466), Expect = e-162
Identities = 284/310 (91%), Positives = 286/310 (92%), Gaps = 1/310 (0%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXX-DSCAAPGSLQPAPA 201
MAAAGAPDGMEEPGMD RPLNCVEAE DSCAA G+LQPAPA
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETVATEAPARPLNCVEAEAAAGAAAAEDSCAARGNLQPAPA 60
Query: 202 QPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 381
QPPGD AAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG
Sbjct: 61 QPPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 120
Query: 382 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 561
LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN
Sbjct: 121 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 180
Query: 562 KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQ 741
KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLP +PLSGMYNKSGGKVRLTFKLEQDQ
Sbjct: 181 KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQ 240
Query: 742 LWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIK 921
LWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIK
Sbjct: 241 LWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIK 300
Query: 922 DTVLGKWQYF 951
DTVLGKWQYF
Sbjct: 301 DTVLGKWQYF 310
>ref|XP_861234.1| PREDICTED: similar to ubiquitin-binding protein homolog isoform 5
[Canis familiaris].
Length = 291
Score = 489 bits (1260), Expect = e-138
Identities = 248/275 (90%), Positives = 251/275 (91%), Gaps = 1/275 (0%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXX-DSCAAPGSLQPAPA 201
MAAAGAPDGMEEPGMD RPLNCVEAE DSCAA G+LQPAPA
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETVATEAPARPLNCVEAEAAAGAAAAEDSCAARGNLQPAPA 60
Query: 202 QPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 381
QPPGD AAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG
Sbjct: 61 QPPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 120
Query: 382 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 561
LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN
Sbjct: 121 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 180
Query: 562 KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQ 741
KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLP +PLSGMYNKSGGKVRLTFKLEQDQ
Sbjct: 181 KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQ 240
Query: 742 LWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMA 846
LWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMM+
Sbjct: 241 LWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMS 275
>ref|XP_861208.1| PREDICTED: similar to ubiquitin-binding protein homolog isoform 4
[Canis familiaris].
Length = 296
Score = 432 bits (1110), Expect = e-121
Identities = 220/246 (89%), Positives = 222/246 (90%), Gaps = 1/246 (0%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXX-DSCAAPGSLQPAPA 201
MAAAGAPDGMEEPGMD RPLNCVEAE DSCAA G+LQPAPA
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETVATEAPARPLNCVEAEAAAGAAAAEDSCAARGNLQPAPA 60
Query: 202 QPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 381
QPPGD AAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG
Sbjct: 61 QPPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 120
Query: 382 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 561
LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN
Sbjct: 121 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 180
Query: 562 KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQ 741
KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLP +PLSGMYNKSGGKVRLTFKLEQDQ
Sbjct: 181 KKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQ 240
Query: 742 LWIGTK 759
LWIGTK
Sbjct: 241 LWIGTK 246
Score = 70.1 bits (170), Expect = 4e-12
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 897 NSICGCNQRHCAGEMAVFLKALSPLAQETDPK 992
NSICGCNQRHCAGE+AVFLKALSPLAQETDPK
Sbjct: 265 NSICGCNQRHCAGEVAVFLKALSPLAQETDPK 296
>ref|XP_861174.1| PREDICTED: similar to ubiquitin-binding protein homolog isoform 3
[Canis familiaris].
Length = 191
Score = 320 bits (819), Expect = 2e-87
Identities = 165/189 (87%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXX-DSCAAPGSLQPAPA 201
MAAAGAPDGMEEPGMD RPLNCVEAE DSCAA G+LQPAPA
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETVATEAPARPLNCVEAEAAAGAAAAEDSCAARGNLQPAPA 60
Query: 202 QPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 381
QPPGD AAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG
Sbjct: 61 QPPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITG 120
Query: 382 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 561
LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN
Sbjct: 121 LPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEEN 180
Query: 562 KKEPLCRQK 588
KKEPLCRQK
Sbjct: 181 KKEPLCRQK 189
>ref|XP_856287.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14
(Ubiquitin thiolesterase 14) (Ubiquitin-specific
processing protease 14) (Deubiquitinating enzyme 14)
isoform 7 [Canis familiaris].
Length = 546
Score = 49.7 bits (117), Expect = 6e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 187 QPAPAQPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHD-VKFPLDSTGSELKQK 363
+P AQP +AA A+ S A L + + W K K + V+ D K +
Sbjct: 31 RPCQAQPSCTAAAAAAASR-------AAMPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQ 83
Query: 364 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 543
+ ++TG+ PA QKVM KG +D +K+ +G ++++GS D L P++ + +
Sbjct: 84 LFALTGVQPARQKVMVKGGTLKDDDWGNLKIKNGMTLLMMGSA--DAL----PEEPSAKT 137
Query: 544 AKAEENKKEPL 576
E+ +E L
Sbjct: 138 VFVEDMTEEQL 148
>ref|XP_856248.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14
(Ubiquitin thiolesterase 14) (Ubiquitin-specific
processing protease 14) (Deubiquitinating enzyme 14)
isoform 6 [Canis familiaris].
Length = 542
Score = 49.7 bits (117), Expect = 6e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 187 QPAPAQPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHD-VKFPLDSTGSELKQK 363
+P AQP +AA A+ S A L + + W K K + V+ D K +
Sbjct: 31 RPCQAQPSCTAAAAAAASR-------AAMPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQ 83
Query: 364 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 543
+ ++TG+ PA QKVM KG +D +K+ +G ++++GS D L P++ + +
Sbjct: 84 LFALTGVQPARQKVMVKGGTLKDDDWGNLKIKNGMTLLMMGSA--DAL----PEEPSAKT 137
Query: 544 AKAEENKKEPL 576
E+ +E L
Sbjct: 138 VFVEDMTEEQL 148
>ref|XP_856207.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14
(Ubiquitin thiolesterase 14) (Ubiquitin-specific
processing protease 14) (Deubiquitinating enzyme 14)
isoform 5 [Canis familiaris].
Length = 545
Score = 49.7 bits (117), Expect = 6e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 187 QPAPAQPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHD-VKFPLDSTGSELKQK 363
+P AQP +AA A+ S A L + + W K K + V+ D K +
Sbjct: 31 RPCQAQPSCTAAAAAAASR-------AAMPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQ 83
Query: 364 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 543
+ ++TG+ PA QKVM KG +D +K+ +G ++++GS D L P++ + +
Sbjct: 84 LFALTGVQPARQKVMVKGGTLKDDDWGNLKIKNGMTLLMMGSA--DAL----PEEPSAKT 137
Query: 544 AKAEENKKEPL 576
E+ +E L
Sbjct: 138 VFVEDMTEEQL 148
>ref|XP_856160.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14
(Ubiquitin thiolesterase 14) (Ubiquitin-specific
processing protease 14) (Deubiquitinating enzyme 14)
isoform 4 [Canis familiaris].
Length = 538
Score = 49.7 bits (117), Expect = 6e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 187 QPAPAQPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHD-VKFPLDSTGSELKQK 363
+P AQP +AA A+ S A L + + W K K + V+ D K +
Sbjct: 31 RPCQAQPSCTAAAAAAASR-------AAMPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQ 83
Query: 364 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 543
+ ++TG+ PA QKVM KG +D +K+ +G ++++GS D L P++ + +
Sbjct: 84 LFALTGVQPARQKVMVKGGTLKDDDWGNLKIKNGMTLLMMGSA--DAL----PEEPSAKT 137
Query: 544 AKAEENKKEPL 576
E+ +E L
Sbjct: 138 VFVEDMTEEQL 148
>ref|XP_537306.2| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14
(Ubiquitin thiolesterase 14) (Ubiquitin-specific
processing protease 14) (Deubiquitinating enzyme 14)
isoform 2 [Canis familiaris].
Length = 545
Score = 49.7 bits (117), Expect = 6e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 187 QPAPAQPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHD-VKFPLDSTGSELKQK 363
+P AQP +AA A+ S A L + + W K K + V+ D K +
Sbjct: 31 RPCQAQPSCTAAAAAAASR-------AAMPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQ 83
Query: 364 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 543
+ ++TG+ PA QKVM KG +D +K+ +G ++++GS D L P++ + +
Sbjct: 84 LFALTGVQPARQKVMVKGGTLKDDDWGNLKIKNGMTLLMMGSA--DAL----PEEPSAKT 137
Query: 544 AKAEENKKEPL 576
E+ +E L
Sbjct: 138 VFVEDMTEEQL 148
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,604,322
Number of extensions: 1065880
Number of successful extensions: 4087
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 10
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002995
(1198 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061989.2| ubiquitin domain-containing protein UBFD1 [Homo... 568 e-162
>ref|NP_061989.2| ubiquitin domain-containing protein UBFD1 [Homo sapiens].
Length = 309
Score = 568 bits (1463), Expect = e-162
Identities = 282/309 (91%), Positives = 285/309 (92%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXXDSCAAPGSLQPAPAQ 204
MAAAGAPDGMEEPGMD RP+NC+EAE DS AA GSLQPAPAQ
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETVATEAPARPVNCLEAEAAAGAAAEDSGAARGSLQPAPAQ 60
Query: 205 PPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL 384
PPGD AAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL
Sbjct: 61 PPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL 120
Query: 385 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK 564
PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK
Sbjct: 121 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK 180
Query: 565 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQL 744
KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLP +PLSGMYNKSGGKVRLTFKLEQDQL
Sbjct: 181 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQL 240
Query: 745 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD 924
WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD
Sbjct: 241 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKD 300
Query: 925 TVLGKWQYF 951
TVLGKWQYF
Sbjct: 301 TVLGKWQYF 309
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,884,619
Number of extensions: 1055768
Number of successful extensions: 4107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002995
(1198 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_613055.2| ubiquitin domain-containing protein UBFD1 [Mus ... 581 e-166
>ref|NP_613055.2| ubiquitin domain-containing protein UBFD1 [Mus musculus].
Length = 368
Score = 581 bits (1497), Expect = e-166
Identities = 287/316 (90%), Positives = 290/316 (91%)
Frame = +1
Query: 4 WVLYTIIMAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXXDSCAAPGS 183
WVLYTIIMAAAGAPDGMEEPGMD RPLNCVEAE DSC A G+
Sbjct: 53 WVLYTIIMAAAGAPDGMEEPGMDTEAEAVATEAPARPLNCVEAEAAVGAAAEDSCDARGN 112
Query: 184 LQPAPAQPPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQK 363
LQPAPAQPPGD AAQASVSNGEDAGGG G+ELVDLKIIWNKTKHDVK PLDSTGSELKQK
Sbjct: 113 LQPAPAQPPGDPAAQASVSNGEDAGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQK 172
Query: 364 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 543
IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD
Sbjct: 173 IHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQD 232
Query: 544 AKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTF 723
AKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLP +PLSGMYNKSGGKVRLTF
Sbjct: 233 AKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTF 292
Query: 724 KLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQ 903
KLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQ
Sbjct: 293 KLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQ 352
Query: 904 YVDAIKDTVLGKWQYF 951
YVDAIKDTVLGKWQYF
Sbjct: 353 YVDAIKDTVLGKWQYF 368
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,616,192
Number of extensions: 889607
Number of successful extensions: 3400
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002995
(1198 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357658.1| PREDICTED: ubiquitin domain-containing prote... 504 e-143
>ref|XP_003357658.1| PREDICTED: ubiquitin domain-containing protein UBFD1-like [Sus
scrofa].
Length = 299
Score = 504 bits (1298), Expect = e-143
Identities = 253/273 (92%), Positives = 253/273 (92%)
Frame = +1
Query: 25 MAAAGAPDGMEEPGMDXXXXXXXXXXXXRPLNCVEAEXXXXXXXXDSCAAPGSLQPAPAQ 204
MAAAGAPDGMEEPGMD RPLNCVEAE DSCAAPGSLQPAPAQ
Sbjct: 1 MAAAGAPDGMEEPGMDTEAETVAPEAPARPLNCVEAEAAAGAAAEDSCAAPGSLQPAPAQ 60
Query: 205 PPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL 384
PPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL
Sbjct: 61 PPGDSAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGL 120
Query: 385 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK 564
PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK
Sbjct: 121 PPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENK 180
Query: 565 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQL 744
KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQL
Sbjct: 181 KEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPNMPLSGMYNKSGGKVRLTFKLEQDQL 240
Query: 745 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMM 843
WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMM
Sbjct: 241 WIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMM 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,597,225
Number of extensions: 693853
Number of successful extensions: 2578
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2569
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002995
(1198 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 529 e-147
>Sscrofa_Chr10
|| Length = 79102373
Score = 529 bits (267), Expect = e-147
Identities = 311/333 (93%)
Strand = Plus / Minus
Query: 49 ggcatggaggagcctggcatggataccgaggccgagaccgtggcgcccgaggcgcccgca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85855 ggcatggaggagcctggcatggataccgaggccgagaccgtggcgcccgaggcgcccgca 85796
Query: 109 cggcccctcaactgcgtagaggccgaannnnnnnnnnnnnnnnnnnnnnaggactcttgc 168
||||||||||||||||||||||||||| |||||||||||
Sbjct: 85795 cggcccctcaactgcgtagaggccgaagccgcggcgggggcggcggccgaggactcttgc 85736
Query: 169 gctgctccaggcagcctgcagccggccccggcccagccccctggggactctgcggcccag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85735 gctgctccaggcagcctgcagccggccccggcccagccccctggggactctgcggcccag 85676
Query: 229 gcgtcggtcagcaacggcgaggacgcgggcggcggcgcgggcagggagctggtggacctg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85675 gcgtcggtcagcaacggcgaggacgcgggcggcggcgcgggcagggagctggtggacctg 85616
Query: 289 aagatcatctggaacaagactaaacacgacgtgaagttccccctggacagcacaggctcc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85615 aagatcatctggaacaagactaaacacgacgtgaagttccccctggacagcacaggctcc 85556
Query: 349 gagctaaaacagaagattcattcgattacaggt 381
|||||||||||||||||||||||||||||||||
Sbjct: 85555 gagctaaaacagaagattcattcgattacaggt 85523
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 378 aggtctcccgcctgccatgcagaaagtcatgtataagggacttgtccctgaggataagac 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84286 aggtctcccgcctgccatgcagaaagtcatgtataagggacttgtccctgaggataagac 84227
Query: 438 gttgagagaaatcaaagtgaccagcggggccaagatcatggtggtaggctccacgataaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84226 gttgagagaaatcaaagtgaccagcggggccaagatcatggtggtaggctccacgataaa 84167
Query: 498 tgatgttttagcagtcaacacgcccaaagatgctgcccagcaggacgcgaaagccgaaga 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84166 tgatgttttagcagtcaacacgcccaaagatgctgcccagcaggacgcgaaagccgaaga 84107
Query: 558 gaacaagaaggagcctctctgcaggcagaaa 588
|||||||||||||||||||||||||||||||
Sbjct: 84106 gaacaagaaggagcctctctgcaggcagaaa 84076
Score = 412 bits (208), Expect = e-112
Identities = 211/212 (99%)
Strand = Plus / Minus
Query: 843 ggcgtttcagttgggccccacggaagcctcttactactgggtgtactgggttccaactca 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74833 ggcgtttcagttgggccccacggaagcctcttactactgggtgtactgggttccaactca 74774
Query: 903 atatgtggatgcaatcaaagacactgtgctggggaaatggcagtatttttgaaagcactt 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74773 atatgtggatgcaatcaaagacactgtgctggggaaatggcagtatttttgaaagcactt 74714
Query: 963 tcacctctggcccaggagactgacccaaagtgaaggacattgctgggagaggcctgcagc 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74713 tcacctctggcccaggagactgacccaaagtgaaggacattgctgggagaggcctgcagc 74654
Query: 1023 atccctggatttcagagttctggaactctgtt 1054
||||||||||||||||||||||||||| ||||
Sbjct: 74653 atccctggatttcagagttctggaactttgtt 74622
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 651 ccaggagcgcctgccaaacatgcccttatccggtatgtacaacaagtccggagggaaagt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80967 ccaggagcgcctgccaaacatgcccttatccggtatgtacaacaagtccggagggaaagt 80908
Query: 711 gagactcacctttaagctagaacaagaccagctgtggatcggcactaaag 760
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80907 gagactcacctttaagctagaacaagaccagctgtggatcggcactaaag 80858
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 759 agagcggactgagaagttgcccatgggctccatcaagaatgtggtcagcgagcctatcga 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77314 agagcggactgagaagttgcccatgggctccatcaagaatgtggtcagcgagcctatcga 77255
Query: 819 aggacacgaagactatcacatgatgg 844
||||||||||||||||||||||||||
Sbjct: 77254 aggacacgaagactatcacatgatgg 77229
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 589 caacacaggaaagtgttggataaaggaaaacccgaagatgtgatgccttctgttaagggt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81449 caacacaggaaagtgttggataaaggaaaacccgaagatgtgatgccttctgttaagggt 81390
Query: 649 gcccagg 655
|||||||
Sbjct: 81389 gcccagg 81383
Score = 113 bits (57), Expect = 2e-22
Identities = 98/110 (89%), Gaps = 2/110 (1%)
Strand = Plus / Minus
Query: 1091 atctaaagtgatgtgntgactgaagccagaggtgatgtactttncacat-agcttaattt 1149
|||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 74583 atctaaggtgatgtggtgactgaagccagaggtgatgtactttcaccattagcttaattt 74524
Query: 1150 ttact-aaatcaccgggttcctttnctgcagtcagcttcataccattttt 1198
| ||| |||||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 74523 taacttaaatcaccggttccctttcttgcagtcagcttcataccattttt 74474
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 3 gtgggtgttgtacacaatcatcatggcggcggccggagccccggatgg 50
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86085 gtgggtgttgtacacaatcatcatggcggcggccggagccccggatgg 86038
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,487,082
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 9
Length of query: 1198
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1177
Effective length of database: 2,808,413,156
Effective search space: 3305502284612
Effective search space used: 3305502284612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)