Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002999
(1351 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073775.1| serine protease 23 precursor [Bos taurus]. 733 0.0
Alignment gi|NP_001030534.3| inactive serine protease 35 precursor [Bos t... 392 e-109
>ref|NP_001073775.1| serine protease 23 precursor [Bos taurus].
Length = 375
Score = 733 bits (1891), Expect = 0.0
Identities = 351/378 (92%), Positives = 358/378 (94%)
Frame = +1
Query: 127 MAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAK 306
MAGTPG GQVSPYS HWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAK
Sbjct: 1 MAGTPGHPIFLLLLLRAI--GQVSPYSTHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAK 58
Query: 307 LEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASGKSR 486
LEVSSSCGPQCHKGTPLPTYEE KQYLSYETLYANGSRTETQVGIYVLRSGE ++SGKSR
Sbjct: 59 LEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYVLRSGEEQSSGKSR 118
Query: 487 RKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVK 666
RKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVK
Sbjct: 119 RKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVK 178
Query: 667 GTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIGMDY 846
GTQKLRVGFLKPKFKDG RGAN+S SA+PEKMKFQWIRVKRTHVPKGWIKGNANDIGMDY
Sbjct: 179 GTQKLRVGFLKPKFKDG-RGANDSHSALPEKMKFQWIRVKRTHVPKGWIKGNANDIGMDY 237
Query: 847 DYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLL 1026
DYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDV+DETYDLL
Sbjct: 238 DYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVQDETYDLL 297
Query: 1027 YQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLK 1206
YQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVD+NGSPQDFNVAVRITPLK
Sbjct: 298 YQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDVNGSPQDFNVAVRITPLK 357
Query: 1207 YAQICYWIKGNYLDCXEG 1260
YAQICYWIKGNY+DC EG
Sbjct: 358 YAQICYWIKGNYVDCREG 375
>ref|NP_001030534.3| inactive serine protease 35 precursor [Bos taurus].
Length = 412
Score = 392 bits (1008), Expect = e-109
Identities = 191/384 (49%), Positives = 259/384 (67%), Gaps = 39/384 (10%)
Frame = +1
Query: 226 WPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLY 405
W ++P ++ + TF+L P F A+AK+ ++ CG +C K P P+ +++ LSYET++
Sbjct: 29 WHVRKIPRLVSERTFHLTSPAFEADAKMVLNRVCGIECQKDLPAPSLSDLEDSLSYETVF 88
Query: 406 ANGSRTETQVGI--YVLRSGEGEASGKS--RRKRQIYGYDSRFSIFGKDFLLNYPFSTSV 573
NGSRT T+V + +V + S + RRKRQ+YG DSRFSI K FL N+PF+T+V
Sbjct: 89 ENGSRTLTRVKVQGWVPEPTQNLTSQGAPVRRKRQVYGTDSRFSILDKKFLTNFPFNTAV 148
Query: 574 KLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGR---------- 723
KLSTGC+G L++ HVLTAAHC+HDG Y+KG++KLRVG LK + K GG+
Sbjct: 149 KLSTGCSGILISPTHVLTAAHCVHDGNGYIKGSKKLRVGLLKMRNKGGGKRRRGSRRNRR 208
Query: 724 -----GANNSSSAVPEKMK--------------------FQWIRVKRTHVPKGWIKGNAN 828
G S ++ E K FQW RVK TH+PKGW +G +
Sbjct: 209 EVSGAGREGSQDSLKETAKAGRRRKGSARRQRAADGRPSFQWTRVKNTHIPKGWARGESG 268
Query: 829 DIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKD 1008
D +DYDYALLELK+PHK+K+M++GVSP K+LPGG IHFSG+D DR LVYRFC V D
Sbjct: 269 DPALDYDYALLELKRPHKKKYMELGVSPTIKKLPGGMIHFSGFDQDRADQLVYRFCSVSD 328
Query: 1009 ETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAV 1188
E+ DLLYQ CDA+ G++GSGVY+R+ + +++W+RKII I+SGHQWVD++G +D+NVAV
Sbjct: 329 ESNDLLYQYCDAESGSTGSGVYLRLKEPDKKRWKRKIIAIYSGHQWVDVHGVQKDYNVAV 388
Query: 1189 RITPLKYAQICYWIKGNYLDCXEG 1260
RITPLKYAQIC W+ G+ +C +G
Sbjct: 389 RITPLKYAQICLWMHGDDANCTQG 412
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,847,367
Number of extensions: 1637635
Number of successful extensions: 5139
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5125
Number of HSP's successfully gapped: 2
Length of query: 450
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 344
Effective length of database: 14,174,046
Effective search space: 4875871824
Effective search space used: 4875871824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002999
(1351 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542268.1| PREDICTED: similar to Serine protease 23 precur... 724 0.0
Alignment gi|XP_539023.2| PREDICTED: similar to protease, serine, 35 [Can... 367 e-101
>ref|XP_542268.1| PREDICTED: similar to Serine protease 23 precursor (Putative secreted
protein ZSIG13) [Canis familiaris].
Length = 379
Score = 724 bits (1870), Expect = 0.0
Identities = 347/380 (91%), Positives = 353/380 (92%), Gaps = 2/380 (0%)
Frame = +1
Query: 127 MAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAK 306
MAG PG GQVSP HWKPTWPAYRLPVVLPQST +L KPDFGAEAK
Sbjct: 1 MAGIPGLLFLLLLLLLCAV-GQVSPSGTHWKPTWPAYRLPVVLPQSTLHLGKPDFGAEAK 59
Query: 307 LEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEG--EASGK 480
LEVSSSCGPQCHKGTPLPTYEE KQYLSYETLYANGSRTETQVGIYVL G G E+SGK
Sbjct: 60 LEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYVLSGGSGGQESSGK 119
Query: 481 SRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTY 660
+RRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAE+HVLTAAHCIHDGKTY
Sbjct: 120 ARRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAERHVLTAAHCIHDGKTY 179
Query: 661 VKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIGM 840
VKGTQKLRVGFLKPKFKDGGRGAN+SSSA+PEKMKFQWIRVKRTHVPKGWIKGNANDIGM
Sbjct: 180 VKGTQKLRVGFLKPKFKDGGRGANSSSSAIPEKMKFQWIRVKRTHVPKGWIKGNANDIGM 239
Query: 841 DYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYD 1020
DYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYD
Sbjct: 240 DYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYD 299
Query: 1021 LLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITP 1200
LLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITP
Sbjct: 300 LLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITP 359
Query: 1201 LKYAQICYWIKGNYLDCXEG 1260
LKYAQICYWIKGNYLDC EG
Sbjct: 360 LKYAQICYWIKGNYLDCREG 379
>ref|XP_539023.2| PREDICTED: similar to protease, serine, 35 [Canis familiaris].
Length = 357
Score = 367 bits (942), Expect = e-101
Identities = 184/351 (52%), Positives = 238/351 (67%), Gaps = 39/351 (11%)
Frame = +1
Query: 325 CGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIY--VLRSGEG-EASGKS-RRK 492
CG +C K P P+ +++ LSYET++ NG+RT T+V I VL + G S RRK
Sbjct: 7 CGIECQKELPAPSLSDLEDSLSYETVFENGTRTLTRVKIQDVVLEPTQNISMKGVSVRRK 66
Query: 493 RQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGT 672
RQ+YG DSRFSI K FL N+PF+T+VKLSTGC+G L++ HVLTAAHC+HDGK Y+KG+
Sbjct: 67 RQVYGTDSRFSILDKKFLTNFPFNTAVKLSTGCSGILISPSHVLTAAHCVHDGKDYIKGS 126
Query: 673 QKLRVGFLKPKFKDGG---RGANNSSSAVP------------EKMK-------------- 765
+KLRVG LK + K GG RG+ S V E+ K
Sbjct: 127 KKLRVGLLKMRNKGGGKKRRGSKRSRREVNGGDQREGAKDNLERAKGGRRRKESGRGQRV 186
Query: 766 ------FQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQL 927
FQW RVK TH+PKGW +G D +DYDYALLELK+ HK+K+M++G+SP K+L
Sbjct: 187 AEGRPSFQWTRVKNTHIPKGWARGGKGDAALDYDYALLELKRAHKKKYMELGISPTIKKL 246
Query: 928 PGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKW 1107
PGG IHFSG+D+DR LVYRFC V DE+ DLLYQ CDA+ G++GSGVY+R+ + ++ W
Sbjct: 247 PGGMIHFSGFDHDRADQLVYRFCSVSDESSDLLYQYCDAESGSTGSGVYLRLKEPDKKNW 306
Query: 1108 ERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCXEG 1260
+RKII ++SGHQWVD++G +D+NVAVRITPLKYAQIC WI G+ +C G
Sbjct: 307 KRKIIAVYSGHQWVDVHGVQKDYNVAVRITPLKYAQICLWIHGDNANCTYG 357
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,209,982
Number of extensions: 1664593
Number of successful extensions: 5502
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5489
Number of HSP's successfully gapped: 3
Length of query: 450
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 344
Effective length of database: 15,340,888
Effective search space: 5277265472
Effective search space used: 5277265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002999
(1351 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009104.1| serine protease 23 precursor [Homo sapiens]. 723 0.0
Alignment gi|NP_001163894.1| inactive serine protease 35 precursor [Homo ... 399 e-111
Alignment gi|NP_699193.2| inactive serine protease 35 precursor [Homo sap... 399 e-111
>ref|NP_009104.1| serine protease 23 precursor [Homo sapiens].
Length = 383
Score = 723 bits (1866), Expect = 0.0
Identities = 350/385 (90%), Positives = 357/385 (92%), Gaps = 7/385 (1%)
Frame = +1
Query: 127 MAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAK 306
MAG PG GQVSPYSA WKPTWPAYRLPVVLPQST NLAKPDFGAEAK
Sbjct: 1 MAGIPGLLFLLFFLLCAV--GQVSPYSAPWKPTWPAYRLPVVLPQSTLNLAKPDFGAEAK 58
Query: 307 LEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRS-GEGE----- 468
LEVSSSCGPQCHKGTPLPTYEE KQYLSYETLYANGSRTETQVGIY+L S G+G
Sbjct: 59 LEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYILSSSGDGAQHRDS 118
Query: 469 -ASGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIH 645
+SGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIH
Sbjct: 119 GSSGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIH 178
Query: 646 DGKTYVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNA 825
DGKTYVKGTQKLRVGFLKPKFKDGGRGAN+S+SA+PE+MKFQWIRVKRTHVPKGWIKGNA
Sbjct: 179 DGKTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNA 238
Query: 826 NDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVK 1005
NDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVK
Sbjct: 239 NDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVK 298
Query: 1006 DETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVA 1185
DETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVA
Sbjct: 299 DETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVA 358
Query: 1186 VRITPLKYAQICYWIKGNYLDCXEG 1260
VRITPLKYAQICYWIKGNYLDC EG
Sbjct: 359 VRITPLKYAQICYWIKGNYLDCREG 383
>ref|NP_001163894.1| inactive serine protease 35 precursor [Homo sapiens].
Length = 413
Score = 399 bits (1025), Expect = e-111
Identities = 196/389 (50%), Positives = 258/389 (66%), Gaps = 40/389 (10%)
Frame = +1
Query: 214 WKPTWPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSY 393
W W ++P ++ + TF+L P F A+AK+ V++ CG +C K P P+ E++ YLSY
Sbjct: 25 WDFMWHLRKVPRIVSERTFHLTSPAFEADAKMMVNTVCGIECQKELPTPSLSELEDYLSY 84
Query: 394 ETLYANGSRTETQVGIY--VLRSGEG-EASGKS-RRKRQIYGYDSRFSIFGKDFLLNYPF 561
ET++ NG+RT T+V + VL + G S RRKRQ+YG DSRFSI K FL N+PF
Sbjct: 85 ETVFENGTRTLTRVKVQDLVLEPTQNITTKGVSVRRKRQVYGTDSRFSILDKRFLTNFPF 144
Query: 562 STSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANNSS 741
ST+VKLSTGC+G L++ +HVLTAAHC+HDGK YVKG++KLRVG LK + K GG+ S
Sbjct: 145 STAVKLSTGCSGILISPQHVLTAAHCVHDGKDYVKGSKKLRVGLLKMRNKSGGKKRRGSK 204
Query: 742 SAVPE------------------------------------KMKFQWIRVKRTHVPKGWI 813
+ E + FQW RVK TH+PKGW
Sbjct: 205 RSRREASGGDQREGTREHLRERAKGGRRRKKSGRGQRIAEGRPSFQWTRVKNTHIPKGWA 264
Query: 814 KGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRF 993
+G D +DYDYALLELK+ HK+K+M++G+SP K++PGG IHFSG+DNDR LVYRF
Sbjct: 265 RGGMGDATLDYDYALLELKRAHKKKYMELGISPTIKKMPGGMIHFSGFDNDRADQLVYRF 324
Query: 994 CDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQD 1173
C V DE+ DLLYQ CDA+ G++GSGVY+R+ ++ W+RKII ++SGHQWVD++G +D
Sbjct: 325 CSVSDESNDLLYQYCDAESGSTGSGVYLRLKDPDKKNWKRKIIAVYSGHQWVDVHGVQKD 384
Query: 1174 FNVAVRITPLKYAQICYWIKGNYLDCXEG 1260
+NVAVRITPLKYAQIC WI GN +C G
Sbjct: 385 YNVAVRITPLKYAQICLWIHGNDANCAYG 413
>ref|NP_699193.2| inactive serine protease 35 precursor [Homo sapiens].
Length = 413
Score = 399 bits (1025), Expect = e-111
Identities = 196/389 (50%), Positives = 258/389 (66%), Gaps = 40/389 (10%)
Frame = +1
Query: 214 WKPTWPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSY 393
W W ++P ++ + TF+L P F A+AK+ V++ CG +C K P P+ E++ YLSY
Sbjct: 25 WDFMWHLRKVPRIVSERTFHLTSPAFEADAKMMVNTVCGIECQKELPTPSLSELEDYLSY 84
Query: 394 ETLYANGSRTETQVGIY--VLRSGEG-EASGKS-RRKRQIYGYDSRFSIFGKDFLLNYPF 561
ET++ NG+RT T+V + VL + G S RRKRQ+YG DSRFSI K FL N+PF
Sbjct: 85 ETVFENGTRTLTRVKVQDLVLEPTQNITTKGVSVRRKRQVYGTDSRFSILDKRFLTNFPF 144
Query: 562 STSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANNSS 741
ST+VKLSTGC+G L++ +HVLTAAHC+HDGK YVKG++KLRVG LK + K GG+ S
Sbjct: 145 STAVKLSTGCSGILISPQHVLTAAHCVHDGKDYVKGSKKLRVGLLKMRNKSGGKKRRGSK 204
Query: 742 SAVPE------------------------------------KMKFQWIRVKRTHVPKGWI 813
+ E + FQW RVK TH+PKGW
Sbjct: 205 RSRREASGGDQREGTREHLRERAKGGRRRKKSGRGQRIAEGRPSFQWTRVKNTHIPKGWA 264
Query: 814 KGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRF 993
+G D +DYDYALLELK+ HK+K+M++G+SP K++PGG IHFSG+DNDR LVYRF
Sbjct: 265 RGGMGDATLDYDYALLELKRAHKKKYMELGISPTIKKMPGGMIHFSGFDNDRADQLVYRF 324
Query: 994 CDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQD 1173
C V DE+ DLLYQ CDA+ G++GSGVY+R+ ++ W+RKII ++SGHQWVD++G +D
Sbjct: 325 CSVSDESNDLLYQYCDAESGSTGSGVYLRLKDPDKKNWKRKIIAVYSGHQWVDVHGVQKD 384
Query: 1174 FNVAVRITPLKYAQICYWIKGNYLDCXEG 1260
+NVAVRITPLKYAQIC WI GN +C G
Sbjct: 385 YNVAVRITPLKYAQICLWIHGNDANCAYG 413
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,012,280
Number of extensions: 1627862
Number of successful extensions: 5007
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4986
Number of HSP's successfully gapped: 5
Length of query: 450
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 344
Effective length of database: 14,802,980
Effective search space: 5092225120
Effective search space used: 5092225120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002999
(1351 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083890.2| serine protease 23 precursor [Mus musculus]. 702 0.0
Alignment gi|NP_848853.2| inactive serine protease 35 precursor [Mus musc... 385 e-107
>ref|NP_083890.2| serine protease 23 precursor [Mus musculus].
Length = 382
Score = 702 bits (1811), Expect = 0.0
Identities = 337/385 (87%), Positives = 349/385 (90%), Gaps = 7/385 (1%)
Frame = +1
Query: 127 MAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAK 306
MAG PG QVSPY+ WKPTWPAYRLPVVLPQST NLAK DF A+AK
Sbjct: 1 MAGIPGLFILLVLLCVFM---QVSPYTVPWKPTWPAYRLPVVLPQSTLNLAKADFDAKAK 57
Query: 307 LEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEG------- 465
LEVSSSCGPQCHKGTPLPTYEE KQYLSYETLYANGSRTET+VGIY+L +GEG
Sbjct: 58 LEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETRVGIYILSNGEGRARGRDS 117
Query: 466 EASGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIH 645
EA+G+SRRKRQIYGYD RFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIH
Sbjct: 118 EATGRSRRKRQIYGYDGRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIH 177
Query: 646 DGKTYVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNA 825
DGKTYVKGTQKLRVGFLKPK+KDG G N+SSSA+P+KMKFQWIRVKRTHVPKGWIKGNA
Sbjct: 178 DGKTYVKGTQKLRVGFLKPKYKDGAGGDNSSSSAMPDKMKFQWIRVKRTHVPKGWIKGNA 237
Query: 826 NDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVK 1005
NDIGMDYDYALLELKKPHKR+FMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVK
Sbjct: 238 NDIGMDYDYALLELKKPHKRQFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVK 297
Query: 1006 DETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVA 1185
DETYDLLYQQCDAQPGASGSGVYVRMWKR QQKWERKIIGIFSGHQWVDMNGSPQDFNVA
Sbjct: 298 DETYDLLYQQCDAQPGASGSGVYVRMWKRPQQKWERKIIGIFSGHQWVDMNGSPQDFNVA 357
Query: 1186 VRITPLKYAQICYWIKGNYLDCXEG 1260
VRITPLKYAQICYWIKGNYLDC EG
Sbjct: 358 VRITPLKYAQICYWIKGNYLDCREG 382
>ref|NP_848853.2| inactive serine protease 35 precursor [Mus musculus].
Length = 409
Score = 385 bits (990), Expect = e-107
Identities = 186/382 (48%), Positives = 254/382 (66%), Gaps = 36/382 (9%)
Frame = +1
Query: 223 TWPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETL 402
TW R+P V+ ++T +LA P F A+A + ++ CG +C + P P+ ++++ LSYET+
Sbjct: 28 TWHLSRIPQVVSENTIHLASPTFQADAGVVKATVCGIECQEELPAPSLSQLEESLSYETI 87
Query: 403 YANGSRTETQV---GIYVLRSGEGEASGKS-RRKRQIYGYDSRFSIFGKDFLLNYPFSTS 570
+ NG+RT T+V G+ + + G RR+RQ+YG DSRFSI K F N+PF+T+
Sbjct: 88 FENGTRTLTRVKVQGLVLEPTRNSSVKGAHPRRRRQVYGTDSRFSILDKRFATNFPFNTA 147
Query: 571 VKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDG----------- 717
VKLSTGC+GTLV+ HVLTAAHC+HDGK YVKG++KLRVG LK + K G
Sbjct: 148 VKLSTGCSGTLVSPNHVLTAAHCVHDGKDYVKGSKKLRVGVLKMRNKGGRKKRRGSKRSR 207
Query: 718 ---------------------GRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDI 834
G+ + + FQW RVK TH+PKGW++G +
Sbjct: 208 REAESAGQSQAHLRESTTQRPGKKSRRGPRVTQGRPSFQWTRVKSTHIPKGWVRGENGGL 267
Query: 835 GMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDET 1014
+DYDYALLELK+ HK++ M++GVSP +LPGGRIHFSG+DNDR LVYRFC V +E+
Sbjct: 268 ALDYDYALLELKRAHKQQHMELGVSPTITKLPGGRIHFSGFDNDRDEQLVYRFCSVSEES 327
Query: 1015 YDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRI 1194
DLLYQ CDA+ G++GSG+Y+R+ + Q+ W+RKI+ ++SGHQWVD++G +D+NVAVRI
Sbjct: 328 NDLLYQYCDAEAGSTGSGIYLRLKEPGQKNWKRKIVAVYSGHQWVDVHGVQKDYNVAVRI 387
Query: 1195 TPLKYAQICYWIKGNYLDCXEG 1260
TPLKYAQIC WI GN +C G
Sbjct: 388 TPLKYAQICLWIHGNAANCAYG 409
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,141,783
Number of extensions: 1355926
Number of successful extensions: 4173
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4162
Number of HSP's successfully gapped: 2
Length of query: 450
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 345
Effective length of database: 12,463,779
Effective search space: 4300003755
Effective search space used: 4300003755
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002999
(1351 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357279.1| PREDICTED: serine protease 23-like isoform 3... 767 0.0
Alignment gi|XP_003357278.1| PREDICTED: serine protease 23-like isoform 2... 767 0.0
Alignment gi|XP_003129779.1| PREDICTED: serine protease 23-like isoform 1... 767 0.0
Alignment gi|XP_001928803.1| PREDICTED: inactive serine protease 35-like ... 387 e-108
>ref|XP_003357279.1| PREDICTED: serine protease 23-like isoform 3 [Sus scrofa].
Length = 381
Score = 767 bits (1981), Expect = 0.0
Identities = 366/381 (96%), Positives = 366/381 (96%)
Frame = +1
Query: 118 MLGMAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA 297
MLGMAGTPG GQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA
Sbjct: 1 MLGMAGTPGLLFALLFLVLLCAVGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA 60
Query: 298 EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG 477
EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG
Sbjct: 61 EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG 120
Query: 478 KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT 657
KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT
Sbjct: 121 KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT 180
Query: 658 YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG 837
YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG
Sbjct: 181 YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG 240
Query: 838 MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY 1017
MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY
Sbjct: 241 MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY 300
Query: 1018 DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT 1197
DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT
Sbjct: 301 DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT 360
Query: 1198 PLKYAQICYWIKGNYLDCXEG 1260
PLKYAQICYWIKGNYLDC EG
Sbjct: 361 PLKYAQICYWIKGNYLDCREG 381
>ref|XP_003357278.1| PREDICTED: serine protease 23-like isoform 2 [Sus scrofa].
Length = 381
Score = 767 bits (1981), Expect = 0.0
Identities = 366/381 (96%), Positives = 366/381 (96%)
Frame = +1
Query: 118 MLGMAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA 297
MLGMAGTPG GQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA
Sbjct: 1 MLGMAGTPGLLFALLFLVLLCAVGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA 60
Query: 298 EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG 477
EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG
Sbjct: 61 EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG 120
Query: 478 KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT 657
KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT
Sbjct: 121 KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT 180
Query: 658 YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG 837
YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG
Sbjct: 181 YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG 240
Query: 838 MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY 1017
MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY
Sbjct: 241 MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY 300
Query: 1018 DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT 1197
DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT
Sbjct: 301 DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT 360
Query: 1198 PLKYAQICYWIKGNYLDCXEG 1260
PLKYAQICYWIKGNYLDC EG
Sbjct: 361 PLKYAQICYWIKGNYLDCREG 381
>ref|XP_003129779.1| PREDICTED: serine protease 23-like isoform 1 [Sus scrofa].
Length = 381
Score = 767 bits (1981), Expect = 0.0
Identities = 366/381 (96%), Positives = 366/381 (96%)
Frame = +1
Query: 118 MLGMAGTPGXXXXXXXXXXXXXXGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA 297
MLGMAGTPG GQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA
Sbjct: 1 MLGMAGTPGLLFALLFLVLLCAVGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGA 60
Query: 298 EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG 477
EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG
Sbjct: 61 EAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASG 120
Query: 478 KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT 657
KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT
Sbjct: 121 KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKT 180
Query: 658 YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG 837
YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG
Sbjct: 181 YVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIG 240
Query: 838 MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY 1017
MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY
Sbjct: 241 MDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETY 300
Query: 1018 DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT 1197
DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT
Sbjct: 301 DLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRIT 360
Query: 1198 PLKYAQICYWIKGNYLDCXEG 1260
PLKYAQICYWIKGNYLDC EG
Sbjct: 361 PLKYAQICYWIKGNYLDCREG 381
>ref|XP_001928803.1| PREDICTED: inactive serine protease 35-like [Sus scrofa].
Length = 414
Score = 387 bits (994), Expect = e-108
Identities = 188/386 (48%), Positives = 256/386 (66%), Gaps = 41/386 (10%)
Frame = +1
Query: 226 WPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLY 405
W ++P V+ + TF+L P F A+AK+ ++ CG +C K P P+ +++ LSYET++
Sbjct: 29 WHLRKIPRVVDERTFHLTSPTFEADAKMALNGVCGIECQKELPSPSLSDLEDSLSYETVF 88
Query: 406 ANGSRTETQVGI--YVLRSGEGEASG--KSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSV 573
NG+RT T+V + +V + + RRKRQ+YG DSRFSI K FL N+PF+T+V
Sbjct: 89 ENGTRTLTRVKVQGWVPEPTQNLTNQGVPIRRKRQVYGTDSRFSILDKRFLTNFPFNTAV 148
Query: 574 KLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGR---------- 723
KLSTGC+G L++ HVLTAAHC+HDGK Y+KGT+KLRVG LK + K GG+
Sbjct: 149 KLSTGCSGVLISPNHVLTAAHCVHDGKDYIKGTRKLRVGLLKMRNKGGGKKRRRGSRRSR 208
Query: 724 -------GANNSSSAVPEKMK--------------------FQWIRVKRTHVPKGWIKGN 822
G S + E K FQW RVK TH+PKGW++G
Sbjct: 209 REVSGDDGGKESKENLKESAKAGRRRNKSARGQRTAAGEPSFQWTRVKHTHIPKGWVRGE 268
Query: 823 ANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDV 1002
+ D +DYDYALLELK+ HK+K+M++G+SP K+LP G IHFSG+D+DR LVYRFC V
Sbjct: 269 SGDAALDYDYALLELKRSHKKKYMELGISPTIKKLPSGMIHFSGFDHDRADQLVYRFCSV 328
Query: 1003 KDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNV 1182
DE+ DLLYQ CDA+ G++GSGVY+R+ + ++ W+RKII ++SGHQWVD++G +D+NV
Sbjct: 329 SDESSDLLYQYCDAESGSTGSGVYLRLKEPGKKSWKRKIIAVYSGHQWVDVHGVEKDYNV 388
Query: 1183 AVRITPLKYAQICYWIKGNYLDCXEG 1260
AVRITPLKYAQIC W+ G+ +C G
Sbjct: 389 AVRITPLKYAQICLWMHGDDANCTYG 414
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,304,881
Number of extensions: 1092727
Number of successful extensions: 3399
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 4
Length of query: 450
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,804,438
Effective search space: 3063944424
Effective search space used: 3063944424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002999
(1351 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 2420 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 2420 bits (1221), Expect = 0.0
Identities = 1232/1236 (99%)
Strand = Plus / Plus
Query: 116 tgatgctcggcatggcggggactccagggcttctcttcgccctcctcttcctcgtcctcc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911472 tgatgctcggcatggcggggactccagggcttctcttcgccctcctcttcctcgtcctcc 22911531
Query: 176 tctgtgctgtggggcaggtgagtccctacagtgcccactggaaacccacctggcctgctt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911532 tctgtgctgtggggcaggtgagtccctacagtgcccactggaaacccacctggcctgctt 22911591
Query: 236 accgcctccccgtggtgttgccccagtccaccttcaacttggccaagccggactttgggg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911592 accgcctccccgtggtgttgccccagtccaccttcaacttggccaagccggactttgggg 22911651
Query: 296 ccgaagccaaattggaagtgtcctcctcgtgtggaccccagtgtcataagggaacgcccc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911652 ccgaagccaaattggaagtgtcctcctcgtgtggaccccagtgtcataagggaacgcccc 22911711
Query: 356 tgcccacttacgaagaggtcaagcagtacctgtcttacgaaaccctctatgccaacggca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911712 tgcccacttacgaagaggtcaagcagtacctgtcttacgaaaccctctatgccaacggca 22911771
Query: 416 gccgcaccgagacgcaggtgggcatctacgtcctcagaagtggcgaaggcgaggcctcgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911772 gccgcaccgagacgcaggtgggcatctacgtcctcagaagtggcgaaggcgaggcctcgg 22911831
Query: 476 gaaagtctcgaaggaagcggcagatttatggctacgacagcagattcagcatttttggga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911832 gaaagtctcgaaggaagcggcagatttatggctacgacagcagattcagcatttttggga 22911891
Query: 536 aggacttcctgctcaactaccccttctcgacatcggtgaagttatctacgggctgcaccg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911892 aggacttcctgctcaactaccccttctcgacatcggtgaagttatctacgggctgcaccg 22911951
Query: 596 gcaccctggtggccgagaagcacgtcctcacggctgcccactgcatacatgatgggaaaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22911952 gcaccctggtggccgagaagcacgtcctcacggctgcccactgcatacatgatgggaaaa 22912011
Query: 656 cctacgtgaaaggaacccagaaactccgagtgggcttcctgaagcccaagtttaaagacg 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912012 cctacgtgaaaggaacccagaaactccgagtgggcttcctgaagcccaagtttaaagacg 22912071
Query: 716 gtggtcgaggagccaacaactcgagctcggcggtgcccgagaagatgaaatttcagtgga 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912072 gtggtcgaggagccaacaactcgagctcggcggtgcccgagaagatgaaatttcagtgga 22912131
Query: 776 tccgagtgaagcgcacccacgtgcccaagggctggatcaagggcaatgccaatgacattg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912132 tccgagtgaagcgcacccacgtgcccaagggctggatcaagggcaatgccaatgacattg 22912191
Query: 836 gcatggattacgactatgccctcctggaactcaaaaaaccccacaagagaaagttcatga 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912192 gcatggattacgactatgccctcctggaactcaaaaaaccccacaagagaaagttcatga 22912251
Query: 896 agattggggtgagccctcccgccaagcagctgccgggaggcagaatccacttctctggtt 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 22912252 agattggggtgagccctcccgccaagcagctgccgggaggcagaatccacttctcgggtt 22912311
Query: 956 atgacaatgaccgaccgggcaacctggtgtaccgcttctgtgacgtcaaagacgagacct 1015
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912312 atgacaatgaccgaccaggcaacctggtgtaccgcttctgtgacgtcaaagacgagacct 22912371
Query: 1016 atgacctgctctaccagcagtgtgacgcccagcccggggccagcgggtccggggtctacg 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912372 atgacctgctctaccagcagtgtgacgcccagcccggggccagcgggtccggggtctacg 22912431
Query: 1076 tgaggatgtggaagagacagcagcagaagtgggaacgaaaaattattggcatcttttctg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912432 tgaggatgtggaagagacagcagcagaagtgggaacgaaaaattattggcatcttttctg 22912491
Query: 1136 ggcaccagtgggtagacatgaatggttctccacaggatttcaacgtggccgttagaatca 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22912492 ggcaccagtgggtagacatgaatggttctccacaggatttcaacgtggccgttagaatca 22912551
Query: 1196 cccctctcaaatatgcccagatttgctactggattaaaggaaactatctggattgtangg 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 22912552 cccctctcaaatatgcccagatttgctactggattaaaggaaactatctggattgtaggg 22912611
Query: 1256 aggggtgacatggtgttccttcctggttgcatttcatggtcttcctgtatttatattaag 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 22912612 aggggtgacatggtgttccttcctggttgcatttcatggtcttcctgtatttatattagg 22912671
Query: 1316 agaggccagattttgtcattggggtgtgtgggtggg 1351
||||||||||||||||||||||||||||||||||||
Sbjct: 22912672 agaggccagattttgtcattggggtgtgtgggtggg 22912707
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 4 gcactcggtcgcgccgcggagccgacatgggagctgcgcgcgccctcccggagcccacac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22903508 gcactcggtcgcgccgcggagccgacatgggagctgcgcgcgccctcccggagcccacac 22903567
Query: 64 ctgtgtgagcggcgcggaga 83
||||||||||||||||||||
Sbjct: 22903568 ctgtgtgagcggcgcggaga 22903587
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,358,052
Number of extensions: 331
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 2
Length of query: 1351
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1330
Effective length of database: 2,808,413,156
Effective search space: 3735189497480
Effective search space used: 3735189497480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)