Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003007
(1419 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033280.2| RIB43A-like with coiled-coils protein 2 [Bos... 504 e-148
Alignment gi|NP_001069053.1| RIB43A-like with coiled-coils protein 1 [Bos... 156 1e-41
>ref|NP_001033280.2| RIB43A-like with coiled-coils protein 2 [Bos taurus].
Length = 377
Score = 504 bits (1297), Expect(2) = e-148
Identities = 259/353 (73%), Positives = 279/353 (79%)
Frame = +1
Query: 208 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
MEVAQPKDL+EDF AK+RHAEL RQKRIFNARNRI GGD AW+ QVCDQ I+ ATEKA
Sbjct: 1 MEVAQPKDLKEDFVLAKRRHAELVRQKRIFNARNRIIGGDTTAWDAQVCDQNIKAATEKA 60
Query: 388 RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
R E FAAEMRQNDKI C+ E+R RRDRKNLCKAINDFQQSFQ+PETRREFDLSDPLALKK
Sbjct: 61 RDEAFAAEMRQNDKIACLSENRERRDRKNLCKAINDFQQSFQRPETRREFDLSDPLALKK 120
Query: 568 DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
D PARQSD DARNT+SGMQKFMGEDLN H R+KFQEEQNREWSLQQQ+E I RE+QK A
Sbjct: 121 DRPARQSDYDARNTISGMQKFMGEDLNFHLRKKFQEEQNREWSLQQQKEQMIGRENQKCA 180
Query: 748 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
EDLYL+TRLQFDETAKHLQNLE TRKAVCA VKEFNKNQALESA DNL
Sbjct: 181 EDLYLKTRLQFDETAKHLQNLETATRKAVCATVKEFNKNQALESAEKKIQERKQEQEDNL 240
Query: 928 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
AEI+N+LRGDLLSE+PQQAASSFGPHRVVPDRWKGM+QEQLE+I
Sbjct: 241 AEISNMLRGDLLSENPQQAASSFGPHRVVPDRWKGMSQEQLEEIRLVQRQQVQEKLRLQE 300
Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQK 1266
DMDWDR+R+QKARATLL E D SNLSLA+EQLLQK
Sbjct: 301 EERQRDMDWDRRRIQKARATLLFEQQQQRLQRGLRRALDCSNLSLAREQLLQK 353
Score = 41.6 bits (96), Expect(2) = e-148
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
+K+MKE+ TN TEDYFTQFNT SR
Sbjct: 353 KKHMKELCTNHATEDYFTQFNTGSR 377
>ref|NP_001069053.1| RIB43A-like with coiled-coils protein 1 [Bos taurus].
Length = 379
Score = 156 bits (395), Expect(2) = 1e-41
Identities = 110/354 (31%), Positives = 165/354 (46%), Gaps = 1/354 (0%)
Frame = +1
Query: 211 EVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKAR 390
+V P D +E +R+ E +Q R FN R R+ G D++A N QV ++K++EATE+++
Sbjct: 3 QVDLPPDPKEVAAIEARRNQEREQQSRFFNVRTRVMGVDVEALNNQVEERKLQEATERSK 62
Query: 391 QETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKD 570
+ + + D + +LE + L K + +F++ QK R E D + L ++
Sbjct: 63 EAAYGTNQVRYDLVAQMLEKEQAERTRRLAKKVQNFREQRQKLRNRCELDFWNSNQLWRE 122
Query: 571 LPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQ-REWKIAREDQKHA 747
PA DN + +Q F GEDL + Q+EQ ++SL++Q +E + AR D+ A
Sbjct: 123 FPAYLGDNAPYYGQASLQCFSGEDLERATYLRMQQEQF-QYSLERQLQEQQQARVDENCA 181
Query: 748 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
+ L + RL D A L LE + R A+ AA NK QA++ A NL
Sbjct: 182 DMLNDQLRLAMDMRAAQLAKLEESCRIAMMAATASANKAQAVKLAEQQGQEHQRQQEANL 241
Query: 928 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
E+ N + DLL+E+PQ A + PHRV+P WKGMT EQ I
Sbjct: 242 VEVQNQITSDLLTENPQVAQNPVAPHRVLPYCWKGMTPEQRATIRKVQETQHHEKEAQRQ 301
Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
D W+ Q + A+A E N LA EQ Q+N
Sbjct: 302 AEQALDAKWESQAINLAQAAKELEEQERELCAEFRRGLGSFNQQLAMEQNAQQN 355
Score = 32.7 bits (73), Expect(2) = 1e-41
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
IYTNQPT Y QFNT SR
Sbjct: 361 IYTNQPTAQYHLQFNTSSR 379
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,189,991
Number of extensions: 1286794
Number of successful extensions: 6312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6173
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003007
(1419 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531699.2| PREDICTED: similar to RIB43A domain with coiled... 388 e-108
Alignment gi|XP_538050.2| PREDICTED: similar to RIB43A domain with coiled... 166 2e-44
>ref|XP_531699.2| PREDICTED: similar to RIB43A domain with coiled-coils 2 [Canis
familiaris].
Length = 284
Score = 388 bits (996), Expect = e-108
Identities = 200/284 (70%), Positives = 216/284 (76%)
Frame = +1
Query: 412 MRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSD 591
MR NDKITCILE R RRD+++LCKAINDFQQSFQ+PETRREFDLSDPLALKKDLPARQSD
Sbjct: 1 MRHNDKITCILEGRERRDKRSLCKAINDFQQSFQRPETRREFDLSDPLALKKDLPARQSD 60
Query: 592 NDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHAEDLYLETR 771
ND RNT+SGMQKFMGEDLN +R+KFQEEQNREWSLQQQREW+ AR Q+ AEDLYL+TR
Sbjct: 61 NDIRNTISGMQKFMGEDLNFRERKKFQEEQNREWSLQQQREWEDARAHQRCAEDLYLKTR 120
Query: 772 LQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAEITNLLR 951
LQFDETAKHLQNLE TRKAVC AVKEFNK+QA ES DN+AEI+NLL
Sbjct: 121 LQFDETAKHLQNLESATRKAVCVAVKEFNKSQATESLERKIQEKKQEQEDNVAEISNLLH 180
Query: 952 GDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXXXXXDMD 1131
GDLLSE+PQQAASSFGPHRVVPDRWKGMTQEQLEQI DMD
Sbjct: 181 GDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEKLRLQEEERQRDMD 240
Query: 1132 WDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQ 1263
WDR+RVQ ARA LL E D +NLSLAKEQ LQ
Sbjct: 241 WDRRRVQMARAVLLLERQQRRQQRDLRRALDCNNLSLAKEQRLQ 284
>ref|XP_538050.2| PREDICTED: similar to RIB43A domain with coiled-coils 1 isoform 1
[Canis familiaris].
Length = 379
Score = 166 bits (420), Expect(2) = 2e-44
Identities = 110/340 (32%), Positives = 161/340 (47%), Gaps = 3/340 (0%)
Frame = +1
Query: 259 KRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQETFAAEMRQNDKITC 438
+R+ E RQ R FN R R+ G D+ A N QV ++K+REATE++++ + Q D +
Sbjct: 19 RRNREKDRQSRFFNVRTRVMGVDVKALNSQVEERKLREATEQSKEAAYGTYQMQYDLVAQ 78
Query: 439 ILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSDNDARNTVSG 618
+LE + L + + +F++ Q+ + R+EFD DP + P R D+D +
Sbjct: 79 MLEKEQAERTRRLARKVQEFREQKQQLKNRQEFDFWDPGRFCMEFPGRFGDSDPYYGPAS 138
Query: 619 MQKFMGEDLNIHQRRKFQEEQNR---EWSLQQQREWKIAREDQKHAEDLYLETRLQFDET 789
+Q F GEDL+ K Q+EQ + E LQ+QR+ K+ D+K ++ L + RL D
Sbjct: 139 LQCFAGEDLDRAACLKMQQEQFKYSLERQLQEQRQVKV---DEKCSDMLNDQLRLAMDMR 195
Query: 790 AKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAEITNLLRGDLLSE 969
A L LE + R A+ +A+ NK QA E A N EI N + DLL+E
Sbjct: 196 ATQLAKLEESCRVAMMSAMANANKAQAAELAERQRREHQREQEANFMEIQNQITSDLLTE 255
Query: 970 DPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXXXXXDMDWDRQRV 1149
+PQ A PHRV+P WKGMT EQ I D+ W+ Q +
Sbjct: 256 NPQVAQHPVAPHRVLPYCWKGMTPEQRTAIRKVQEVQRHEKEAQRQAEQALDVKWENQAL 315
Query: 1150 QKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
A+A + E N LA EQ Q+N
Sbjct: 316 HSAQAAMELEEQERELCAEFRRGLGSFNQQLAMEQKAQQN 355
Score = 32.7 bits (73), Expect(2) = 2e-44
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
IYTNQPT Y QFNT SR
Sbjct: 361 IYTNQPTTQYHLQFNTSSR 379
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,242,889
Number of extensions: 1321847
Number of successful extensions: 6308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6179
Number of HSP's successfully gapped: 3
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003007
(1419 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056468.2| RIB43A-like with coiled-coils protein 2 [Homo s... 507 e-151
Alignment gi|NP_001026915.1| RIB43A-like with coiled-coils protein 1 isof... 166 3e-44
Alignment gi|NP_659405.1| RIB43A-like with coiled-coils protein 1 isoform... 96 6e-20
>ref|NP_056468.2| RIB43A-like with coiled-coils protein 2 [Homo sapiens].
Length = 377
Score = 507 bits (1305), Expect(2) = e-151
Identities = 258/353 (73%), Positives = 280/353 (79%)
Frame = +1
Query: 208 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
M VA P+DL +D AK+RHAELCRQKR+FNARNRI GGD +AW+VQV DQKI+EATEKA
Sbjct: 1 MAVALPRDLRQDANLAKRRHAELCRQKRVFNARNRIIGGDTEAWDVQVHDQKIKEATEKA 60
Query: 388 RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
R ETFAAEMRQNDKI CILE+R +RDRKNLC+AINDFQQSFQKPETRREFDLSDPLALKK
Sbjct: 61 RHETFAAEMRQNDKIMCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKK 120
Query: 568 DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
DLPARQSDND RNT+SGMQKFMGEDLN H+R+KFQEEQNREWSLQQQREWK AR +QK A
Sbjct: 121 DLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQNREWSLQQQREWKNARAEQKCA 180
Query: 748 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
E LY ETRLQFDETAKHLQ LE TTRKAVCA+VK+FNK+QA+ES DNL
Sbjct: 181 EALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNL 240
Query: 928 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
AEITNLLRGDLLSE+PQQAASSFGPHRVVPDRWKGMTQEQLEQI
Sbjct: 241 AEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEKLRLQE 300
Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQK 1266
D+DWDR+R+Q ARATLL E D SNLSLAKEQ LQK
Sbjct: 301 EKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRALDSSNLSLAKEQHLQK 353
Score = 47.8 bits (112), Expect(2) = e-151
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
+KYM E+YTNQPT DYFTQFNT SR
Sbjct: 353 KKYMNEVYTNQPTGDYFTQFNTGSR 377
>ref|NP_001026915.1| RIB43A-like with coiled-coils protein 1 isoform 1 [Homo sapiens].
Length = 379
Score = 166 bits (419), Expect(2) = 3e-44
Identities = 112/352 (31%), Positives = 162/352 (46%)
Frame = +1
Query: 214 VAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQ 393
+ Q D +E +R+ E RQ R FN RNR+ G D+ A N QV D+K REA E++++
Sbjct: 4 IKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKE 63
Query: 394 ETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDL 573
+ Q D + +LE + L K + +F++ Q+ + REF L DP + K L
Sbjct: 64 AAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGL 123
Query: 574 PARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHAED 753
P S ++ + +Q F GEDL+ R + Q+ Q R +QQ+E + A+ D+ + +
Sbjct: 124 PTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLERQQQEQQQAKVDENYTDA 183
Query: 754 LYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAE 933
L + RL D A HL LE + R A+ A+ NK QA A NLAE
Sbjct: 184 LSNQLRLAMDAQATHLARLEESCRAAMMCAMANANKAQAAVQAGRQRCERQREQKANLAE 243
Query: 934 ITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXX 1113
I + DLL+E+PQ A P+RV+P WKGMT EQ I
Sbjct: 244 IQHQSTSDLLTENPQVAQHPMAPYRVLPYCWKGMTPEQQAAIRKEQEVQRSKKQAHRQAE 303
Query: 1114 XXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
D +W Q + A+A L E N LA EQ Q++
Sbjct: 304 KTLDTEWKSQTMSSAQAVLELEEQERELCAVFQRGLGSFNQQLANEQKAQQD 355
Score = 32.7 bits (73), Expect(2) = 3e-44
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
IYTNQPT Y QFNT SR
Sbjct: 361 IYTNQPTAQYHQQFNTSSR 379
>ref|NP_659405.1| RIB43A-like with coiled-coils protein 1 isoform 2 [Homo sapiens].
Length = 192
Score = 96.3 bits (238), Expect = 6e-20
Identities = 58/177 (32%), Positives = 93/177 (52%)
Frame = +1
Query: 214 VAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQ 393
+ Q D +E +R+ E RQ R FN RNR+ G D+ A N QV D+K REA E++++
Sbjct: 4 IKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKE 63
Query: 394 ETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDL 573
+ Q D + +LE + L K + +F++ Q+ + REF L DP + K L
Sbjct: 64 AAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGL 123
Query: 574 PARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKH 744
P S ++ + +Q F GEDL+ R + Q+ Q R +QQ+E + A+ D+ +
Sbjct: 124 PTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLERQQQEQQQAKVDENY 180
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,302,145
Number of extensions: 1294564
Number of successful extensions: 5906
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5813
Number of HSP's successfully gapped: 5
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003007
(1419 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080633.2| RIB43A-like with coiled-coils protein 2 [Mus mu... 403 e-117
Alignment gi|NP_079936.1| RIB43A-like with coiled-coils protein 1 [Mus mu... 147 3e-39
>ref|NP_080633.2| RIB43A-like with coiled-coils protein 2 [Mus musculus].
Length = 377
Score = 403 bits (1036), Expect(2) = e-117
Identities = 207/353 (58%), Positives = 248/353 (70%)
Frame = +1
Query: 208 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
MEVA KDL+++ AKKR+ +LCRQ RIF+ARNRI GGD AW+ QV DQKI+E T+KA
Sbjct: 1 MEVAMSKDLQQEANLAKKRYIDLCRQGRIFDARNRIIGGDTQAWDFQVRDQKIKEITDKA 60
Query: 388 RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
R E FAAEM+ NDK+ C+ DR +R RK LC+AINDFQQ+FQKPETRREFDLSDPLAL+K
Sbjct: 61 RHEAFAAEMKHNDKVMCMAHDREQRHRKQLCRAINDFQQNFQKPETRREFDLSDPLALQK 120
Query: 568 DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
+LPAR SDND RNT+SGMQKFMGEDLN +RR+FQ+EQ+REW LQQ E + AR D A
Sbjct: 121 ELPARISDNDMRNTISGMQKFMGEDLNFQERRRFQKEQSREWFLQQHGEREKARADHLLA 180
Query: 748 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
E L+ +TRL+FDETA+ L LEG+TRK VCAAVK FNKNQ +E DN+
Sbjct: 181 EHLHTQTRLKFDETARELMKLEGSTRKEVCAAVKAFNKNQVVELTERKRQEKQQEQEDNM 240
Query: 928 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
EITNLL GDLLSE+P+ ASSFG HRVV DRWKGM +EQLE+I
Sbjct: 241 TEITNLLHGDLLSENPRPVASSFGSHRVVLDRWKGMNREQLEEIWFTQKRQIQEKLRLQE 300
Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQK 1266
MDWD +R++KA A+LL E D SNL+LA++Q LQK
Sbjct: 301 EERQHSMDWDLRRIRKAHASLLHERQQQRLLREQRRALDCSNLNLARQQYLQK 353
Score = 37.7 bits (86), Expect(2) = e-117
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
+K M ++QPTEDYF+QFNTRSR
Sbjct: 353 KKQMNTASSSQPTEDYFSQFNTRSR 377
>ref|NP_079936.1| RIB43A-like with coiled-coils protein 1 [Mus musculus].
Length = 379
Score = 147 bits (372), Expect(2) = 3e-39
Identities = 107/338 (31%), Positives = 151/338 (44%), Gaps = 1/338 (0%)
Frame = +1
Query: 259 KRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQETFAAEMRQNDKITC 438
+R+ E RQ R FN RNR+ G D++A N QV ++K REA E+ + + + D +
Sbjct: 19 RRNREKERQSRFFNVRNRVMGVDVEALNYQVEERKFREAIERNKDIAYGTKHAHYDLVAQ 78
Query: 439 ILEDRARRDRKNLCKAINDF-QQSFQKPETRREFDLSDPLALKKDLPARQSDNDARNTVS 615
+LE L K + DF +Q Q+ + EFD DP + + + DA +
Sbjct: 79 MLEKEEAERAYRLSKRVQDFREQRQQQYKNGHEFDFWDPDQFQ-EFRVPYYEKDAYFGPA 137
Query: 616 GMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHAEDLYLETRLQFDETAK 795
MQ F GEDL + Q+EQ R +Q +E + ARE++ A L + RL D A
Sbjct: 138 SMQYFFGEDLERASHVRMQQEQMRYNLEKQLQEQQAAREEEARAALLSDQLRLAADTRAA 197
Query: 796 HLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAEITNLLRGDLLSEDP 975
L LE + R A+ A+ NK QA + A NL E+ + DLL+E+P
Sbjct: 198 ELARLEESCRAAMRTAMANANKAQAAKQALQQRREQQRQQEANLTEVKKQVTSDLLTENP 257
Query: 976 QQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXXXXXDMDWDRQRVQK 1155
Q A + PHRV+P WKGM+ EQ I + +W RQ +
Sbjct: 258 QVAQRANAPHRVLPYCWKGMSAEQRAAIRKTQETQRQEKKEQRQAEKLVEAEWGRQNKRL 317
Query: 1156 ARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
A A L E N LAKEQ Q+N
Sbjct: 318 AEAALELEEQERELCAEFRRGLGSFNRELAKEQQAQQN 355
Score = 33.9 bits (76), Expect(2) = 3e-39
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
IYTNQPT Y+ QFNT SR
Sbjct: 361 IYTNQPTAHYYLQFNTSSR 379
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,619,711
Number of extensions: 1094064
Number of successful extensions: 5542
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5373
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003007
(1419 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126005.1| PREDICTED: RIB43A-like with coiled-coils pro... 592 e-179
Alignment gi|XP_003126002.2| PREDICTED: RIB43A-like with coiled-coils pro... 570 e-172
>ref|XP_003126005.1| PREDICTED: RIB43A-like with coiled-coils protein 2-like [Sus scrofa].
Length = 377
Score = 592 bits (1526), Expect(2) = e-179
Identities = 304/358 (84%), Positives = 306/358 (85%)
Frame = +1
Query: 208 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA
Sbjct: 1 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 60
Query: 388 RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
RQETFAAEMRQNDKITCILEDRARRDRK LCKAI+DFQQSFQKPETRREFDLSDPLALKK
Sbjct: 61 RQETFAAEMRQNDKITCILEDRARRDRKTLCKAISDFQQSFQKPETRREFDLSDPLALKK 120
Query: 568 DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
DLPARQSDNDARNTVSGMQKFMGEDLN HQRRKFQEEQNREWSLQQQREWKIAREDQKHA
Sbjct: 121 DLPARQSDNDARNTVSGMQKFMGEDLNFHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 180
Query: 748 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESA DNL
Sbjct: 181 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAEKKRQERKQEQEDNL 240
Query: 928 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQI
Sbjct: 241 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQVQEKLRLQE 300
Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKNI*KK 1281
DMDWDRQRVQKARATLLSE DGSNLSLAKEQLLQK K+
Sbjct: 301 EERQRDMDWDRQRVQKARATLLSERQLQRQQRALRRALDGSNLSLAKEQLLQKKYMKE 358
Score = 55.5 bits (132), Expect(2) = e-179
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
+KYMKEIYTNQPTEDYFTQFNTRSR
Sbjct: 353 KKYMKEIYTNQPTEDYFTQFNTRSR 377
>ref|XP_003126002.2| PREDICTED: RIB43A-like with coiled-coils protein 2-like [Sus scrofa].
Length = 358
Score = 570 bits (1468), Expect(2) = e-172
Identities = 296/358 (82%), Positives = 298/358 (83%)
Frame = +1
Query: 208 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA
Sbjct: 1 MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 60
Query: 388 RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
RQETFAAEMRQNDKITCILEDRARRDRK LCKAI+DFQQSFQKPETRREFDLSDPLALKK
Sbjct: 61 RQETFAAEMRQNDKITCILEDRARRDRKTLCKAISDFQQSFQKPETRREFDLSDPLALKK 120
Query: 568 DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
DLPARQSDNDARNTVSGMQKFMGEDLN HQRRKFQEEQNREWSLQQQREWKIAREDQKHA
Sbjct: 121 DLPARQSDNDARNTVSGMQKFMGEDLNFHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 180
Query: 748 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESA DNL
Sbjct: 181 EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAEKKRQERKQEQEDNL 240
Query: 928 AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
AEITNLLRGDLLSEDP ASSFGPHRVVPDRWKGMTQEQLEQI
Sbjct: 241 AEITNLLRGDLLSEDPPPPASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQVQEKLRLQE 300
Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKNI*KK 1281
DMDWDRQRVQKARATLL NLSLAKEQLLQK K+
Sbjct: 301 EERQRDMDWDRQRVQKARATLL-------------------NLSLAKEQLLQKKYMKE 339
Score = 55.5 bits (132), Expect(2) = e-172
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
+KYMKEIYTNQPTEDYFTQFNTRSR
Sbjct: 334 KKYMKEIYTNQPTEDYFTQFNTRSR 358
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,345,477
Number of extensions: 827735
Number of successful extensions: 3868
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3812
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003007
(1419 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895517.2| Sus scrofa unplaced genomic scaffold ChrUScaf3401 654 0.0
Sscrofa_Chr05 654 0.0
>gb|GL895517.2| Sus scrofa unplaced genomic scaffold ChrUScaf3401
Length = 13909
Score = 654 bits (330), Expect = 0.0
Identities = 342/346 (98%)
Strand = Plus / Minus
Query: 403 gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9872 gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 9813
Query: 463 gacaggaaaaatctctgtaaagctatcaatgacttccagcagagctttcagaagccagaa 522
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9812 gacaggaaaactctctgtaaagctatcagtgacttccagcagagctttcagaagccagaa 9753
Query: 523 actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9752 actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 9693
Query: 583 cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9692 cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 9633
Query: 643 ttaaacatccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 702
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9632 ttaaacttccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 9573
Query: 703 cagcagagggagtggaagattgcccgtgaggaccaaaaacacgccg 748
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9572 cagcaaagggagtggaagattgcccgtgaggaccaaaaacacgccg 9527
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 172 aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13405 aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 13346
Query: 232 ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13345 ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 13286
Query: 292 atcttcaatgccaggaacaggatctttgggg 322
|||||||||||||||||||||||||||||||
Sbjct: 13285 atcttcaatgccaggaacaggatctttgggg 13255
Score = 252 bits (127), Expect = 5e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 1 acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13576 acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 13517
Query: 61 agtctctggagcaggcgcggatcccaccggcccaggctcctagggaaccagcctcactta 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 13516 agtctctggagcaggcgcggatcccaccggcccaggctcctagggaatcagcctcactta 13457
Query: 121 gcttgagcttg 131
|||||||||||
Sbjct: 13456 gcttgagcttg 13446
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 748 gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8632 gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 8573
Query: 808 ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8572 ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 8513
Query: 868 g 868
|
Sbjct: 8512 g 8512
Score = 236 bits (119), Expect = 3e-59
Identities = 131/135 (97%)
Strand = Plus / Minus
Query: 1264 aaaaatatatgaaagaaatctatacaaatcagcccactgaagattatttcacacaattta 1323
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 aaaaatatatgaaggaaatctatacaaatcagcccactgaagattatttcacacaattta 3534
Query: 1324 ataccagaagtcgataatgaaaaggccacctgccctcctgctgaattgtataaagtgctg 1383
|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 3533 atacaagaagtcgataatgaaaaggccacctgccttcctgctaaattgtataaagtgctg 3474
Query: 1384 tacccttaaagagtc 1398
|||||||||||||||
Sbjct: 3473 tacccttaaagagtc 3459
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 983 cagccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccagg 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 cagccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccagg 7176
Query: 1043 agcagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 7123
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 865 caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7459 caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 7400
Query: 925 ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacc 973
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7399 ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacc 7351
Score = 159 bits (80), Expect = 5e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 1095 gaggctccaggaagaggagcgccagcgagacatggactgggaccggcagagggttcagaa 1154
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5062 gaggctccaggaagaggagcgccagcgggacatggactgggaccggcagagggttcagaa 5003
Query: 1155 ggctcgcgccaccttgctgtcgga 1178
||||||||||||||||||||||||
Sbjct: 5002 ggctcgcgccaccttgctgtcgga 4979
Score = 157 bits (79), Expect = 2e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 321 gggagacatagacgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12467 gggagacatagatgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 12408
Query: 381 aaaagctagacaggaaacatttg 403
|||||||||||||||||||||||
Sbjct: 12407 aaaagctagacaggaaacatttg 12385
Score = 71.9 bits (36), Expect = 9e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1228 agcaacctcagcctggccaaggagcagcttttgcag 1263
||||||||||||||||||||||||||||||||||||
Sbjct: 4878 agcaacctcagcctggccaaggagcagcttttgcag 4843
>Sscrofa_Chr05
|| Length = 111506441
Score = 654 bits (330), Expect = 0.0
Identities = 342/346 (98%)
Strand = Plus / Minus
Query: 403 gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206175 gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 1206116
Query: 463 gacaggaaaaatctctgtaaagctatcaatgacttccagcagagctttcagaagccagaa 522
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1206115 gacaggaaaactctctgtaaagctatcagtgacttccagcagagctttcagaagccagaa 1206056
Query: 523 actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206055 actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 1205996
Query: 583 cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205995 cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 1205936
Query: 643 ttaaacatccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 702
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205935 ttaaacttccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 1205876
Query: 703 cagcagagggagtggaagattgcccgtgaggaccaaaaacacgccg 748
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205875 cagcaaagggagtggaagattgcccgtgaggaccaaaaacacgccg 1205830
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 865 caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203762 caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 1203703
Query: 925 ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacccgcagcaggca 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203702 ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacccgcagcaggca 1203643
Query: 985 gccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccaggag 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203642 gccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccaggag 1203583
Query: 1045 cagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203582 cagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 1203532
Score = 327 bits (165), Expect = 1e-86
Identities = 168/169 (99%)
Strand = Plus / Minus
Query: 1095 gaggctccaggaagaggagcgccagcgagacatggactgggaccggcagagggttcagaa 1154
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1201658 gaggctccaggaagaggagcgccagcgggacatggactgggaccggcagagggttcagaa 1201599
Query: 1155 ggctcgcgccaccttgctgtcggagcggcagctgcagcgccagcagcgtgcgctgcgcag 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201598 ggctcgcgccaccttgctgtcggagcggcagctgcagcgccagcagcgtgcgctgcgcag 1201539
Query: 1215 agccctggacggcagcaacctcagcctggccaaggagcagcttttgcag 1263
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201538 agccctggacggcagcaacctcagcctggccaaggagcagcttttgcag 1201490
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 172 aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209657 aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 1209598
Query: 232 ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209597 ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 1209538
Query: 292 atcttcaatgccaggaacaggatctttgggg 322
|||||||||||||||||||||||||||||||
Sbjct: 1209537 atcttcaatgccaggaacaggatctttgggg 1209507
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1 acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209828 acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 1209769
Query: 61 agtctctggagcaggcgcggatcccaccggcccaggctcctagggaaccagcctcactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209768 agtctctggagcaggcgcggatcccaccggcccaggctcctagggaaccagcctcactta 1209709
Query: 121 gcttgagcttg 131
|||||||||||
Sbjct: 1209708 gcttgagcttg 1209698
Score = 254 bits (128), Expect = 1e-64
Identities = 140/144 (97%)
Strand = Plus / Minus
Query: 1264 aaaaatatatgaaagaaatctatacaaatcagcccactgaagattatttcacacaattta 1323
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200381 aaaaatatatgaaggaaatctatacaaatcagcccactgaagattatttcacacaattta 1200322
Query: 1324 ataccagaagtcgataatgaaaaggccacctgccctcctgctgaattgtataaagtgctg 1383
|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1200321 atacaagaagtcgataatgaaaaggccacctgccttcctgctaaattgtataaagtgctg 1200262
Query: 1384 tacccttaaagagtcccatgtgtt 1407
||||||||||||||||||||||||
Sbjct: 1200261 tacccttaaagagtcccatgtgtt 1200238
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 748 gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204935 gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 1204876
Query: 808 ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204875 ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 1204816
Query: 868 g 868
|
Sbjct: 1204815 g 1204815
Score = 157 bits (79), Expect = 2e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 321 gggagacatagacgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208719 gggagacatagatgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 1208660
Query: 381 aaaagctagacaggaaacatttg 403
|||||||||||||||||||||||
Sbjct: 1208659 aaaagctagacaggaaacatttg 1208637
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,152,524
Number of extensions: 356
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 18
Length of query: 1419
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1398
Effective length of database: 2,808,413,156
Effective search space: 3926161592088
Effective search space used: 3926161592088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)