Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003016
(751 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030218.1| microsomal glutathione S-transferase 3 [Bos ... 280 7e-76
Alignment gi|NP_001069850.1| microsomal glutathione S-transferase 2 [Bos ... 55 8e-08
>ref|NP_001030218.1| microsomal glutathione S-transferase 3 [Bos taurus].
Length = 152
Score = 280 bits (717), Expect = 7e-76
Identities = 137/153 (89%), Positives = 143/153 (93%), Gaps = 2/153 (1%)
Frame = +1
Query: 91 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 270
M VLSKEYGFV+LTGAASF+MV HLAINVSKARKKYKVEYPTMYSTDPENGH+FNCIQRA
Sbjct: 1 MAVLSKEYGFVILTGAASFLMVTHLAINVSKARKKYKVEYPTMYSTDPENGHIFNCIQRA 60
Query: 271 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 450
HQNTLEVYPPFLFFLAVGG+YHPRIVSGLGLAWIVGRVLYAYGYYTGEP KR RGAL I
Sbjct: 61 HQNTLEVYPPFLFFLAVGGVYHPRIVSGLGLAWIVGRVLYAYGYYTGEPRKRQRGALSFI 120
Query: 451 ALIGLMGTTVYSAFQHLGWVKTGLD--CKSKCH 543
ALIGLMGTTV SAFQHLGWV+TGL+ CKS CH
Sbjct: 121 ALIGLMGTTVCSAFQHLGWVRTGLNSGCKS-CH 152
>ref|NP_001069850.1| microsomal glutathione S-transferase 2 [Bos taurus].
Length = 146
Score = 54.7 bits (130), Expect = 8e-08
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Frame = +1
Query: 160 HLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRAHQNTLEVYPPFLFFLAVGGIYHP 339
+ A+ V KAR KYKV P++ S P+ F I RA QN +E YP F+ L + G Y
Sbjct: 21 YFAMQVGKARSKYKVTPPSV-SGSPD----FERIFRAQQNCVEFYPIFIITLWMAGWYFN 75
Query: 340 RI-VSGLGLAWIVGRVLYAYGYYTGEPSKRS----RGALGSIALIGLMG 471
++ + LGL +I R Y +GY E +K+ R +LG +AL+ ++G
Sbjct: 76 QVFATCLGLVYIYSRHQYFWGY--AEAAKKRVTGFRLSLGVLALLTVLG 122
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,427,475
Number of extensions: 876873
Number of successful extensions: 2304
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2301
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 150
Effective length of database: 14,372,574
Effective search space: 2155886100
Effective search space used: 2155886100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003016
(751 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851330.1| PREDICTED: similar to microsomal glutathione S-... 292 2e-79
Alignment gi|XP_536147.1| PREDICTED: similar to microsomal glutathione S-... 292 2e-79
>ref|XP_851330.1| PREDICTED: similar to microsomal glutathione S-transferase 3 [Canis
familiaris].
Length = 152
Score = 292 bits (748), Expect = 2e-79
Identities = 141/150 (94%), Positives = 144/150 (96%)
Frame = +1
Query: 91 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 270
M VLSKEYGFVVLTGAASFIMV HLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA
Sbjct: 1 MAVLSKEYGFVVLTGAASFIMVAHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 60
Query: 271 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 450
HQNTLEVYPPFLFFLAVGG+YHPRI SGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGS+
Sbjct: 61 HQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSL 120
Query: 451 ALIGLMGTTVYSAFQHLGWVKTGLDCKSKC 540
ALIGLMGTTV+SAFQHLGWVKTGL SKC
Sbjct: 121 ALIGLMGTTVFSAFQHLGWVKTGLGGGSKC 150
>ref|XP_536147.1| PREDICTED: similar to microsomal glutathione S-transferase 3 [Canis
familiaris].
Length = 152
Score = 292 bits (748), Expect = 2e-79
Identities = 141/150 (94%), Positives = 144/150 (96%)
Frame = +1
Query: 91 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 270
M VLSKEYGFVVLTGAASFIMV HLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA
Sbjct: 1 MAVLSKEYGFVVLTGAASFIMVAHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 60
Query: 271 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 450
HQNTLEVYPPFLFFLAVGG+YHPRI SGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGS+
Sbjct: 61 HQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSL 120
Query: 451 ALIGLMGTTVYSAFQHLGWVKTGLDCKSKC 540
ALIGLMGTTV+SAFQHLGWVKTGL SKC
Sbjct: 121 ALIGLMGTTVFSAFQHLGWVKTGLGGGSKC 150
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,650,157
Number of extensions: 898632
Number of successful extensions: 2266
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2265
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 150
Effective length of database: 15,540,904
Effective search space: 2331135600
Effective search space used: 2331135600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003016
(751 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004519.1| microsomal glutathione S-transferase 3 [Homo sa... 282 3e-76
Alignment gi|NP_001191295.1| microsomal glutathione S-transferase 2 isofo... 60 2e-09
Alignment gi|NP_002404.1| microsomal glutathione S-transferase 2 isoform ... 60 2e-09
>ref|NP_004519.1| microsomal glutathione S-transferase 3 [Homo sapiens].
Length = 152
Score = 282 bits (721), Expect = 3e-76
Identities = 135/150 (90%), Positives = 141/150 (94%)
Frame = +1
Query: 91 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 270
M VLSKEYGFV+LTGAASFIMV HLAINVSKARKKYKVEYP MYSTDPENGH+FNCIQRA
Sbjct: 1 MAVLSKEYGFVLLTGAASFIMVAHLAINVSKARKKYKVEYPIMYSTDPENGHIFNCIQRA 60
Query: 271 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 450
HQNTLEVYPPFLFFLAVGG+YHPRI SGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI
Sbjct: 61 HQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 120
Query: 451 ALIGLMGTTVYSAFQHLGWVKTGLDCKSKC 540
AL+GL+GTTV SAFQHLGWVK+GL KC
Sbjct: 121 ALLGLVGTTVCSAFQHLGWVKSGLGSGPKC 150
>ref|NP_001191295.1| microsomal glutathione S-transferase 2 isoform 1 [Homo sapiens].
Length = 147
Score = 60.1 bits (144), Expect = 2e-09
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Frame = +1
Query: 115 GFVVLTGAASFIMV---GHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRAHQNTL 285
G +L A S + + A+ V KAR KYKV P + + PE F + RA QN +
Sbjct: 3 GNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGS-PE----FERVFRAQQNCV 57
Query: 286 EVYPPFLFFLAVGGIYHPRIVSG-LGLAWIVGRVLYAYGYYTGEPSKRS----RGALGSI 450
E YP F+ L + G Y ++ + LGL +I GR LY +GY E +K+ R +LG +
Sbjct: 58 EFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGY--SEAAKKRITGFRLSLGIL 115
Query: 451 ALIGLMG 471
AL+ L+G
Sbjct: 116 ALLTLLG 122
>ref|NP_002404.1| microsomal glutathione S-transferase 2 isoform 1 [Homo sapiens].
Length = 147
Score = 60.1 bits (144), Expect = 2e-09
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Frame = +1
Query: 115 GFVVLTGAASFIMV---GHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRAHQNTL 285
G +L A S + + A+ V KAR KYKV P + + PE F + RA QN +
Sbjct: 3 GNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGS-PE----FERVFRAQQNCV 57
Query: 286 EVYPPFLFFLAVGGIYHPRIVSG-LGLAWIVGRVLYAYGYYTGEPSKRS----RGALGSI 450
E YP F+ L + G Y ++ + LGL +I GR LY +GY E +K+ R +LG +
Sbjct: 58 EFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGY--SEAAKKRITGFRLSLGIL 115
Query: 451 ALIGLMG 471
AL+ L+G
Sbjct: 116 ALLTLLG 122
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,088,423
Number of extensions: 886881
Number of successful extensions: 2305
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2303
Number of HSP's successfully gapped: 3
Length of query: 250
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 150
Effective length of database: 15,000,764
Effective search space: 2250114600
Effective search space used: 2250114600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003016
(751 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079845.1| microsomal glutathione S-transferase 3 [Mus mus... 266 9e-72
>ref|NP_079845.1| microsomal glutathione S-transferase 3 [Mus musculus].
Length = 153
Score = 266 bits (681), Expect = 9e-72
Identities = 126/152 (82%), Positives = 137/152 (90%), Gaps = 1/152 (0%)
Frame = +1
Query: 91 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 270
M VLSKEYGFV+LTGAASF+MV HLAINV KARKKYKVEYP MYSTDPENGH+FNCIQRA
Sbjct: 1 MAVLSKEYGFVLLTGAASFVMVLHLAINVGKARKKYKVEYPVMYSTDPENGHMFNCIQRA 60
Query: 271 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 450
HQNTLEVYPPFLFFL VGG+YHPRI SGLGLAWI+GRVLYAYGYYTG+PSKR RGA+GS+
Sbjct: 61 HQNTLEVYPPFLFFLTVGGVYHPRIASGLGLAWIIGRVLYAYGYYTGDPSKRYRGAVGSL 120
Query: 451 ALIGLMGTTVYSAFQHLGWVKTGLDCKSK-CH 543
AL LMGTTV SAFQHLGW++ GL S+ CH
Sbjct: 121 ALFALMGTTVCSAFQHLGWIRPGLGYGSRSCH 152
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,406,374
Number of extensions: 749134
Number of successful extensions: 1936
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 151
Effective length of database: 12,643,995
Effective search space: 1909243245
Effective search space used: 1909243245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003016
(751 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038021.1| microsomal glutathione S-transferase 3 [Sus ... 314 4e-86
>ref|NP_001038021.1| microsomal glutathione S-transferase 3 [Sus scrofa].
Length = 151
Score = 314 bits (804), Expect = 4e-86
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +1
Query: 91 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 270
MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA
Sbjct: 1 MTVLSKEYGFVVLTGAASFIMVGHLAINVSKARKKYKVEYPTMYSTDPENGHLFNCIQRA 60
Query: 271 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 450
HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI
Sbjct: 61 HQNTLEVYPPFLFFLAVGGIYHPRIVSGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSI 120
Query: 451 ALIGLMGTTVYSAFQHLGWVKTGLDCKSKCH 543
ALIGLMGTTVYSAFQHLGWVKTGLDCKSKCH
Sbjct: 121 ALIGLMGTTVYSAFQHLGWVKTGLDCKSKCH 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,627,262
Number of extensions: 563628
Number of successful extensions: 1473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1471
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,953,820
Effective search space: 1378888280
Effective search space used: 1378888280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003016
(751 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 454 e-125
>Sscrofa_Chr04
|| Length = 143465943
Score = 454 bits (229), Expect = e-125
Identities = 243/250 (97%)
Strand = Plus / Minus
Query: 411 agaacccagcaagcgaagtcggggagcactgggctccattgccctcattggcctcatggg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92725771 agaacccagcaagcgaagtcggggagcactgggctccattgccctcattggcctcatggg 92725712
Query: 471 caccactgtgtactctgccttccagcatcttggttgggttaaaaccggcttggactgtaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92725711 caccactgtgtactctgccttccagcatcttggttgggttaaaaccggcttggactgtaa 92725652
Query: 531 gtccaagtgccattagaaaagtatagggtgtttgaaaaccctcattcatttcgagtgact 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92725651 gtccaagtgccattagaaaagtatagggtgtttgaaaaccctcattcatttcgagtgact 92725592
Query: 591 tacttttatttccagttacnnnnnnncccctaaatataataaaaacttaactggcctcgg 650
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 92725591 tacttttatttccagttactttttttcccctaaatataataaaaacttaactggcctcgg 92725532
Query: 651 cctcatacct 660
||||||||||
Sbjct: 92725531 cctcatacct 92725522
Score = 252 bits (127), Expect = 2e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 81 cagagtcaggatgactgtgctctctaaggaatacggtttcgtggttctgaccggcgctgc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92731845 cagagtcaggatgactgtgctctctaaggaatacggtttcgtggttctgaccggcgctgc 92731786
Query: 141 cagcttcataatggtcgggcatctagccatcaacgtctccaaggcccgcaagaagtacaa 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92731785 cagcttcataatggtcgggcatctagccatcaacgtctccaaggcccgcaagaagtacaa 92731726
Query: 201 agtggag 207
|||||||
Sbjct: 92731725 agtggag 92731719
Score = 161 bits (81), Expect = 7e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 3 actctcccagaggccaagggcgcagctcctacacttccctgtgctgctgagttctgcacc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92750683 actctcccagaggccaagggcgcagctcctacacttccctgtgctgctgagttctgcacc 92750624
Query: 63 agtcctgtagaggtgatccag 83
|||||||||||||||||||||
Sbjct: 92750623 agtcctgtagaggtgatccag 92750603
Score = 155 bits (78), Expect = 4e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 206 agtatcctaccatgtacagcacggaccctgaaaacggacacctcttcaactgcattcagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92730437 agtatcctaccatgtacagcacggaccctgaaaacggacacctcttcaactgcattcagc 92730378
Query: 266 gagcccaccagaacacgt 283
||||||||||||||||||
Sbjct: 92730377 gagcccaccagaacacgt 92730360
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 339 gcgtatagtttctggcttgggcttggcctggattgttggacgagttctttatgcttatgg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92726842 gcgtatagtttctggcttgggcttggcctggattgttggacgagttctttatgcttatgg 92726783
Query: 399 ctattacacaggag 412
||||||||||||||
Sbjct: 92726782 ctattacacaggag 92726769
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 282 gttggaagtgtatccgcccttcttattttttctagccgttggaggtatttaccacccg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92729376 gttggaagtgtatccgcccttcttattttttctagccgttggaggtatttaccacccg 92729319
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,167,066
Number of extensions: 366
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 6
Length of query: 751
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 730
Effective length of database: 2,808,413,156
Effective search space: 2050141603880
Effective search space used: 2050141603880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)