Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003018
(1851 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098975.1| apoptosis related protein 3 [Bos taurus]. 327 2e-89
Alignment gi|NP_001039684.2| solute carrier family 5 (sodium-dependent vi... 91 5e-18
>ref|NP_001098975.1| apoptosis related protein 3 [Bos taurus].
Length = 229
Score = 327 bits (839), Expect = 2e-89
Identities = 149/197 (75%), Positives = 162/197 (82%)
Frame = +3
Query: 1014 EICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQA 1193
EIC QCPG VQNLSEVA YCK+TPEL L+ RCCLNG+GTILGLDLQNCSLKDPGP+F QA
Sbjct: 33 EICTQCPGSVQNLSEVAFYCKRTPELTLRARCCLNGEGTILGLDLQNCSLKDPGPNFPQA 92
Query: 1194 HTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQ 1373
HTA+IIDLQANP +GD NTF GFTQLQTLILPQ VNCPGGINAWD +TFYI NQ+C+GQ
Sbjct: 93 HTAIIIDLQANPLQGDLVNTFHGFTQLQTLILPQDVNCPGGINAWDTITFYINNQSCEGQ 152
Query: 1374 QNLCNSTGDPETCPENGSCAPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFXXXXXXXX 1553
+N+CN+T DPE CPENGSC PDGPGLLQCVCADGFHGY+CMRQGSF L MFF
Sbjct: 153 RNICNTTEDPEICPENGSCVPDGPGLLQCVCADGFHGYRCMRQGSFPLFMFFGILGSTTL 212
Query: 1554 XXXXXXXXXQRRKAKAS 1604
QRRKAKAS
Sbjct: 213 SISILLWGTQRRKAKAS 229
>ref|NP_001039684.2| solute carrier family 5 (sodium-dependent vitamin transporter),
member 6 [Bos taurus].
Length = 638
Score = 90.5 bits (223), Expect = 5e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = -2
Query: 131 IGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
IGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA
Sbjct: 42 IGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 84
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 78,109,725
Number of extensions: 2523538
Number of successful extensions: 12879
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12746
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 509
Effective length of database: 14,107,870
Effective search space: 7180905830
Effective search space used: 7180905830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003018
(1851 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532906.2| PREDICTED: similar to apoptosis related protein... 313 4e-85
Alignment gi|XP_532905.2| PREDICTED: similar to solute carrier family 5 (... 81 3e-15
>ref|XP_532906.2| PREDICTED: similar to apoptosis related protein 3 isoform b [Canis
familiaris].
Length = 229
Score = 313 bits (802), Expect = 4e-85
Identities = 149/197 (75%), Positives = 157/197 (79%)
Frame = +3
Query: 1014 EICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQA 1193
EICI CP V+NLSEV LYCKQTP LML RCCLN +GTI+GLDLQNCSLKD GP F QA
Sbjct: 33 EICILCPESVRNLSEVTLYCKQTPGLMLHNRCCLNQEGTIVGLDLQNCSLKDLGPKFPQA 92
Query: 1194 HTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQ 1373
HTAVIIDLQANP + D ANTFRGFTQLQTLILPQ V+CPGGINAW+ VTFYI NQ CQGQ
Sbjct: 93 HTAVIIDLQANPLKDDLANTFRGFTQLQTLILPQDVSCPGGINAWNTVTFYINNQICQGQ 152
Query: 1374 QNLCNSTGDPETCPENGSCAPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFXXXXXXXX 1553
+N CN+TGD E CPENGSC PDGPGLLQCVCADGFHGYKCMRQG FSLLMFF
Sbjct: 153 RNFCNTTGDQEICPENGSCVPDGPGLLQCVCADGFHGYKCMRQGYFSLLMFFGILGSTTL 212
Query: 1554 XXXXXXXXXQRRKAKAS 1604
QRRKAKAS
Sbjct: 213 SISILLWGTQRRKAKAS 229
>ref|XP_532905.2| PREDICTED: similar to solute carrier family 5 (sodium-dependent
vitamin transporter), member 6 [Canis familiaris].
Length = 650
Score = 81.3 bits (199), Expect = 3e-15
Identities = 37/43 (86%), Positives = 41/43 (95%)
Frame = -2
Query: 131 IGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
IGLYHA RGWG+H++GQLL+ADRKM CLPVALSLLATFQSAVA
Sbjct: 55 IGLYHALRGWGQHTVGQLLMADRKMSCLPVALSLLATFQSAVA 97
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 81,452,609
Number of extensions: 2605487
Number of successful extensions: 13334
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13204
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 508
Effective length of database: 15,240,880
Effective search space: 7742367040
Effective search space used: 7742367040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003018
(1851 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001164266.1| apoptosis-related protein 3 isoform c precur... 323 3e-88
Alignment gi|NP_542159.3| apoptosis-related protein 3 isoform b [Homo sap... 323 3e-88
Alignment gi|NP_057169.2| apoptosis-related protein 3 isoform a [Homo sap... 282 8e-76
Alignment gi|NP_066918.2| sodium-dependent multivitamin transporter [Homo... 84 6e-16
>ref|NP_001164266.1| apoptosis-related protein 3 isoform c precursor [Homo sapiens].
Length = 229
Score = 323 bits (829), Expect = 3e-88
Identities = 152/197 (77%), Positives = 160/197 (81%)
Frame = +3
Query: 1014 EICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQA 1193
EIC QCPG VQNLS+VA YCK T ELML RCCLN KGTILGLDLQNCSL+DPGP+F QA
Sbjct: 33 EICTQCPGSVQNLSKVAFYCKTTRELMLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQA 92
Query: 1194 HTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQ 1373
HT VIIDLQANP +GD ANTFRGFTQLQTLILPQ VNCPGGINAW+ +T YI NQ CQGQ
Sbjct: 93 HTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQ 152
Query: 1374 QNLCNSTGDPETCPENGSCAPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFXXXXXXXX 1553
+NLCN+TGDPE CPENGSC PDGPGLLQCVCADGFHGYKCMRQGSFSLLMFF
Sbjct: 153 KNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFGILGATTL 212
Query: 1554 XXXXXXXXXQRRKAKAS 1604
QRRKAK S
Sbjct: 213 SVSILLWATQRRKAKTS 229
>ref|NP_542159.3| apoptosis-related protein 3 isoform b [Homo sapiens].
Length = 284
Score = 323 bits (829), Expect = 3e-88
Identities = 152/197 (77%), Positives = 160/197 (81%)
Frame = +3
Query: 1014 EICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQA 1193
EIC QCPG VQNLS+VA YCK T ELML RCCLN KGTILGLDLQNCSL+DPGP+F QA
Sbjct: 88 EICTQCPGSVQNLSKVAFYCKTTRELMLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQA 147
Query: 1194 HTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQ 1373
HT VIIDLQANP +GD ANTFRGFTQLQTLILPQ VNCPGGINAW+ +T YI NQ CQGQ
Sbjct: 148 HTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHVNCPGGINAWNTITSYIDNQICQGQ 207
Query: 1374 QNLCNSTGDPETCPENGSCAPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFXXXXXXXX 1553
+NLCN+TGDPE CPENGSC PDGPGLLQCVCADGFHGYKCMRQGSFSLLMFF
Sbjct: 208 KNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFGILGATTL 267
Query: 1554 XXXXXXXXXQRRKAKAS 1604
QRRKAK S
Sbjct: 268 SVSILLWATQRRKAKTS 284
>ref|NP_057169.2| apoptosis-related protein 3 isoform a [Homo sapiens].
Length = 171
Score = 282 bits (721), Expect = 8e-76
Identities = 132/171 (77%), Positives = 139/171 (81%)
Frame = +3
Query: 1092 MLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQ 1271
ML RCCLN KGTILGLDLQNCSL+DPGP+F QAHT VIIDLQANP +GD ANTFRGFTQ
Sbjct: 1 MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQ 60
Query: 1272 LQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQQNLCNSTGDPETCPENGSCAPDGPGL 1451
LQTLILPQ VNCPGGINAW+ +T YI NQ CQGQ+NLCN+TGDPE CPENGSC PDGPGL
Sbjct: 61 LQTLILPQHVNCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGL 120
Query: 1452 LQCVCADGFHGYKCMRQGSFSLLMFFXXXXXXXXXXXXXXXXXQRRKAKAS 1604
LQCVCADGFHGYKCMRQGSFSLLMFF QRRKAK S
Sbjct: 121 LQCVCADGFHGYKCMRQGSFSLLMFFGILGATTLSVSILLWATQRRKAKTS 171
>ref|NP_066918.2| sodium-dependent multivitamin transporter [Homo sapiens].
Length = 635
Score = 83.6 bits (205), Expect = 6e-16
Identities = 38/43 (88%), Positives = 42/43 (97%)
Frame = -2
Query: 131 IGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
IGLYHA RGWGRH++G+LL+ADRKMGCLPVALSLLATFQSAVA
Sbjct: 42 IGLYHACRGWGRHTVGELLMADRKMGCLPVALSLLATFQSAVA 84
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 79,543,260
Number of extensions: 2526314
Number of successful extensions: 11999
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11886
Number of HSP's successfully gapped: 4
Length of query: 617
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 508
Effective length of database: 14,704,088
Effective search space: 7469676704
Effective search space used: 7469676704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003018
(1851 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082131.2| apoptosis-related protein 3 isoform 1 [Mus musc... 295 1e-79
Alignment gi|NP_001171093.1| sodium-dependent multivitamin transporter [M... 83 8e-16
Alignment gi|NP_808538.1| sodium-dependent multivitamin transporter [Mus ... 83 8e-16
Alignment gi|NP_001171092.1| sodium-dependent multivitamin transporter [M... 83 8e-16
>ref|NP_082131.2| apoptosis-related protein 3 isoform 1 [Mus musculus].
Length = 223
Score = 295 bits (754), Expect = 1e-79
Identities = 143/197 (72%), Positives = 153/197 (77%)
Frame = +3
Query: 1014 EICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQA 1193
EIC CPG + NLS VA YC+ T +LM Q RCCLN KGTILGLDLQNCSLKDPGP+F QA
Sbjct: 28 EICTLCPGGMHNLSRVAAYCEDTSKLM-QARCCLNQKGTILGLDLQNCSLKDPGPNFLQA 86
Query: 1194 HTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQ 1373
+TA+IIDLQANP + D ANTFRGFTQLQTLILPQ V CPGG NAWD VT + Q CQGQ
Sbjct: 87 YTAIIIDLQANPLKDDLANTFRGFTQLQTLILPQDVPCPGGSNAWDNVTSFKDKQICQGQ 146
Query: 1374 QNLCNSTGDPETCPENGSCAPDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFXXXXXXXX 1553
++LCNSTG PE CPENGSCA DGPGLLQCVCADGFHGYKCMRQGSFSLLMFF
Sbjct: 147 RDLCNSTGSPEMCPENGSCASDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFGILGSTTL 206
Query: 1554 XXXXXXXXXQRRKAKAS 1604
QRRKAKAS
Sbjct: 207 AISILLWGTQRRKAKAS 223
>ref|NP_001171093.1| sodium-dependent multivitamin transporter [Mus musculus].
Length = 634
Score = 82.8 bits (203), Expect = 8e-16
Identities = 37/44 (84%), Positives = 42/44 (95%)
Frame = -2
Query: 134 IIGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
+IGLYHA RGWG H++G+LL+ADRKMGCLPVALSLLATFQSAVA
Sbjct: 40 VIGLYHACRGWGHHTVGELLMADRKMGCLPVALSLLATFQSAVA 83
>ref|NP_808538.1| sodium-dependent multivitamin transporter [Mus musculus].
Length = 634
Score = 82.8 bits (203), Expect = 8e-16
Identities = 37/44 (84%), Positives = 42/44 (95%)
Frame = -2
Query: 134 IIGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
+IGLYHA RGWG H++G+LL+ADRKMGCLPVALSLLATFQSAVA
Sbjct: 40 VIGLYHACRGWGHHTVGELLMADRKMGCLPVALSLLATFQSAVA 83
>ref|NP_001171092.1| sodium-dependent multivitamin transporter [Mus musculus].
Length = 634
Score = 82.8 bits (203), Expect = 8e-16
Identities = 37/44 (84%), Positives = 42/44 (95%)
Frame = -2
Query: 134 IIGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
+IGLYHA RGWG H++G+LL+ADRKMGCLPVALSLLATFQSAVA
Sbjct: 40 VIGLYHACRGWGHHTVGELLMADRKMGCLPVALSLLATFQSAVA 83
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,851,765
Number of extensions: 2071125
Number of successful extensions: 9764
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9672
Number of HSP's successfully gapped: 4
Length of query: 617
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 510
Effective length of database: 12,403,707
Effective search space: 6325890570
Effective search space used: 6325890570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003018
(1851 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125342.1| PREDICTED: apoptosis-related protein 3-like ... 385 e-107
Alignment gi|XP_003125341.1| PREDICTED: sodium-dependent multivitamin tra... 92 1e-18
>ref|XP_003125342.1| PREDICTED: apoptosis-related protein 3-like [Sus scrofa].
Length = 229
Score = 385 bits (990), Expect = e-107
Identities = 186/229 (81%), Positives = 186/229 (81%)
Frame = +3
Query: 918 MARPGFXXXXXXXXXXXXXXXXXXXXXXXXXXEICIQCPGDVQNLSEVALYCKQTPELML 1097
MARPGF EICIQCPGDVQNLSEVALYCKQTPELML
Sbjct: 1 MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELML 60
Query: 1098 QGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQ 1277
QGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQ
Sbjct: 61 QGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQ 120
Query: 1278 TLILPQGVNCPGGINAWDVVTFYITNQTCQGQQNLCNSTGDPETCPENGSCAPDGPGLLQ 1457
TLILPQGVNCPGGINAWDVVTFYITNQTCQGQQNLCNSTGDPETCPENGSCAPDGPGLLQ
Sbjct: 121 TLILPQGVNCPGGINAWDVVTFYITNQTCQGQQNLCNSTGDPETCPENGSCAPDGPGLLQ 180
Query: 1458 CVCADGFHGYKCMRQGSFSLLMFFXXXXXXXXXXXXXXXXXQRRKAKAS 1604
CVCADGFHGYKCMRQGSFSLLMFF QRRKAKAS
Sbjct: 181 CVCADGFHGYKCMRQGSFSLLMFFGILGSTTLSISILLWGTQRRKAKAS 229
>ref|XP_003125341.1| PREDICTED: sodium-dependent multivitamin transporter-like [Sus
scrofa].
Length = 638
Score = 92.0 bits (227), Expect = 1e-18
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = -2
Query: 134 IIGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 3
IIGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA
Sbjct: 41 IIGLYHAYRGWGRHSIGQLLLADRKMGCLPVALSLLATFQSAVA 84
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 50,532,455
Number of extensions: 1633140
Number of successful extensions: 8211
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8135
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 512
Effective length of database: 8,729,747
Effective search space: 4469630464
Effective search space used: 4469630464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003018
(1851 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 837 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 837 bits (422), Expect = 0.0
Identities = 422/422 (100%)
Strand = Plus / Minus
Query: 595 gagggcggaaggatcggccccaaggcgctgcggcgacgcgacctcggcgtccaggctgga 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118918195 gagggcggaaggatcggccccaaggcgctgcggcgacgcgacctcggcgtccaggctgga 118918136
Query: 655 ggaacgcgggtctgagagagcggtcgtggggagagccttcatgtaacagggaaaagaagg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118918135 ggaacgcgggtctgagagagcggtcgtggggagagccttcatgtaacagggaaaagaagg 118918076
Query: 715 ggcggtctggccccccaaaggaggacgaaggcccacaaagaagagcgctggcctccgcgc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118918075 ggcggtctggccccccaaaggaggacgaaggcccacaaagaagagcgctggcctccgcgc 118918016
Query: 775 gctacggcaacccccagccggcggactggccgggccgacggaccgctcaactagccacac 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118918015 gctacggcaacccccagccggcggactggccgggccgacggaccgctcaactagccacac 118917956
Query: 835 ccccgggaagggccagaggcggtgggggcggggccacactctcaagtctcgcgatcagct 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118917955 ccccgggaagggccagaggcggtgggggcggggccacactctcaagtctcgcgatcagct 118917896
Query: 895 gagaaggacggagggagcagaaaatggcccgtcccggtttccgcagtccctcgagcttgg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118917895 gagaaggacggagggagcagaaaatggcccgtcccggtttccgcagtccctcgagcttgg 118917836
Query: 955 tgccccgggctgcagccctgctcctcgttctgagcgtgccaagggctttggcgttacccg 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118917835 tgccccgggctgcagccctgctcctcgttctgagcgtgccaagggctttggcgttacccg 118917776
Query: 1015 ag 1016
||
Sbjct: 118917775 ag 118917774
Score = 813 bits (410), Expect = 0.0
Identities = 410/410 (100%)
Strand = Plus / Minus
Query: 1 atggccacggcggactggaaggtggccagcaaggacagcgccacaggaaggcagcccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118922243 atggccacggcggactggaaggtggccagcaaggacagcgccacaggaaggcagcccatc 118922184
Query: 61 ttgcggtcggccagcagcagctggccgatgctgtgccggccccagccacggtaggcgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118922183 ttgcggtcggccagcagcagctggccgatgctgtgccggccccagccacggtaggcgtgg 118922124
Query: 121 tagagcccaatgatgagcgagagaaccaacagcagcacgaagaccacatagtccgccgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118922123 tagagcccaatgatgagcgagagaaccaacagcagcacgaagaccacatagtccgccgtg 118922064
Query: 181 gagaaggtggaggcgctcgcatctgcgtctgaggctggggcgggggtggtggaggggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118922063 gagaaggtggaggcgctcgcatctgcgtctgaggctggggcgggggtggtggaggggctc 118922004
Query: 241 acccccacgttcatagcttctccaggaccgtgtcctgcagccgtcggctgctcctgcgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118922003 acccccacgttcatagcttctccaggaccgtgtcctgcagccgtcggctgctcctgcgct 118921944
Query: 301 ctgggctgccacttggctgggtggtgacgggtgagtggctaccatctgacccccagccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118921943 ctgggctgccacttggctgggtggtgacgggtgagtggctaccatctgacccccagccac 118921884
Query: 361 tgtctcacggtcctcctccaccaccaaggggcatggtccaggaggcgctg 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118921883 tgtctcacggtcctcctccaccaccaaggggcatggtccaggaggcgctg 118921834
Score = 662 bits (334), Expect = 0.0
Identities = 334/334 (100%)
Strand = Plus / Minus
Query: 1500 cagggctcattctcactgctcatgttcttcggtattctgggatccacaacattatccatt 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118913299 cagggctcattctcactgctcatgttcttcggtattctgggatccacaacattatccatt 118913240
Query: 1560 tccatcctgctttgggggactcaacgccgaaaagccaaggcttcatgaaccacagaggtc 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118913239 tccatcctgctttgggggactcaacgccgaaaagccaaggcttcatgaaccacagaggtc 118913180
Query: 1620 ttcttactgacctaaagatcatccccatcttagcccagccagggggatttgcttcctaga 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118913179 ttcttactgacctaaagatcatccccatcttagcccagccagggggatttgcttcctaga 118913120
Query: 1680 catcgttggtcagcaaagatgaccggaagtcgttgttagaaagaagatggaaatttgcat 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118913119 catcgttggtcagcaaagatgaccggaagtcgttgttagaaagaagatggaaatttgcat 118913060
Query: 1740 aacctcagtgtgttgcagacgcaccagcccaggagtggactagtatcagttctcatttgt 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118913059 aacctcagtgtgttgcagacgcaccagcccaggagtggactagtatcagttctcatttgt 118913000
Query: 1800 gctgttgaccataataaattttttcttttgcttc 1833
||||||||||||||||||||||||||||||||||
Sbjct: 118912999 gctgttgaccataataaattttttcttttgcttc 118912966
Score = 248 bits (125), Expect = 9e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 1015 agatatgcatccagtgtcccggggatgtgcaaaatttgtcagaagtggccctttattgta 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118917065 agatatgcatccagtgtcccggggatgtgcaaaatttgtcagaagtggccctttattgta 118917006
Query: 1075 aacagacaccagagctaatgctgcaaggccgctgctgcctgaatgggaagggcaccatcc 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118917005 aacagacaccagagctaatgctgcaaggccgctgctgcctgaatgggaagggcaccatcc 118916946
Query: 1135 tgggg 1139
|||||
Sbjct: 118916945 tgggg 118916941
Score = 242 bits (122), Expect = 6e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1283 gatactgccacaaggtgtcaactgtccgggaggtatcaatgcctgggatgttgtcacttt 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118914768 gatactgccacaaggtgtcaactgtccgggaggtatcaatgcctgggatgttgtcacttt 118914709
Query: 1343 ttatataaccaaccaaacctgccaaggacaacagaacctttgcaacagcactggggaccc 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118914708 ttatataaccaaccaaacctgccaaggacaacagaacctttgcaacagcactggggaccc 118914649
Query: 1403 ag 1404
||
Sbjct: 118914648 ag 118914647
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 408 ctgtaacaccaccgtcaagagcagatccaggaagagggacgagattcaagtgcgagggca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118921215 ctgtaacaccaccgtcaagagcagatccaggaagagggacgagattcaagtgcgagggca 118921156
Query: 468 ccaggctggagccaggcgcgcagagttccaatgtggagagaagcaaagcagccggggagc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118921155 ccaggctggagccaggcgcgcagagttccaatgtggagagaagcaaagcagccggggagc 118921096
Query: 528 t 528
|
Sbjct: 118921095 t 118921095
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1403 agaaacgtgtcctgagaatggatcttgtgctcctgatggtcctggtctcttgcagtgtgt 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118914344 agaaacgtgtcctgagaatggatcttgtgctcctgatggtcctggtctcttgcagtgtgt 118914285
Query: 1463 ttgtgctgatggcttccatggctacaagtgtatgcgccagg 1503
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 118914284 ttgtgctgatggcttccatggctacaagtgtatgcgccagg 118914244
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1211 agacctgcaggcaaaccccttcgagggcgactgggccaacaccttccgtggctttaccca 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118914939 agacctgcaggcaaaccccttcgagggcgactgggccaacaccttccgtggctttaccca 118914880
Query: 1271 gctccagactctg 1283
|||||||||||||
Sbjct: 118914879 gctccagactctg 118914867
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1138 ggctggatctccagaactgttctctgaaggaccctggtccagactttgctcaggcacata 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118915223 ggctggatctccagaactgttctctgaaggaccctggtccagactttgctcaggcacata 118915164
Query: 1198 ctgctgtcatcat 1210
|||||||||||||
Sbjct: 118915163 ctgctgtcatcat 118915151
Score = 119 bits (60), Expect = 6e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 527 ctccgccgcccagccaaggctaagaaggtcccgtggttcttcccgagttctgcatcactc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118918758 ctccgccgcccagccaaggctaagaaggtcccgtggttcttcccgagttctgcatcactc 118918699
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,273,791
Number of extensions: 337
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 10
Length of query: 1851
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1829
Effective length of database: 2,808,408,574
Effective search space: 5136579281846
Effective search space used: 5136579281846
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)