Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003021
(1737 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777055.1| cytochrome b-c1 complex subunit 2, mitochondria... 782 0.0
Alignment gi|XP_002690086.1| PREDICTED: cytochrome b-c1 complex subunit 2... 777 0.0
Alignment gi|XP_001789022.1| PREDICTED: cytochrome b-c1 complex subunit 2... 777 0.0
Alignment gi|XP_001790174.1| PREDICTED: cytochrome b-c1 complex subunit 2... 777 0.0
Alignment gi|XP_002697371.1| PREDICTED: cytochrome b-c1 complex subunit 2... 775 0.0
Alignment gi|XP_001252309.1| PREDICTED: cytochrome b-c1 complex subunit 2... 775 0.0
Alignment gi|NP_001070432.1| mitochondrial-processing peptidase subunit a... 150 3e-36
Alignment gi|NP_001029785.1| mitochondrial-processing peptidase subunit b... 134 3e-31
Alignment gi|XP_001789518.1| PREDICTED: mitochondrial-processing peptidas... 132 7e-31
Alignment gi|NP_777054.1| cytochrome b-c1 complex subunit 1, mitochondria... 109 9e-24
>ref|NP_777055.1| cytochrome b-c1 complex subunit 2, mitochondrial precursor [Bos
taurus].
Length = 453
Score = 782 bits (2020), Expect = 0.0
Identities = 405/453 (89%), Positives = 419/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGS SRFY PQDLEFTRLPNGLVIASLENYAPASR
Sbjct: 1 MKLLTRAGSLSRFYSLKVAPKVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYE+SNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRE+MA
Sbjct: 61 IGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLRDD++ILMEFLLNVT APEFRRWEVAALQ QLRIDKAVA QNPQA V+ENLHAA
Sbjct: 121 YTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTP +LH YVQNHFTSARMALIGLGVSHPVLKQVAE+FLN+
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNI 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKY GGEIR+QNGDSLVHAALVAESAA GSAEANAFSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG YTISQAASAGDVIK+AY+QVKT
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSN DVQAAKNKLKAGYLMSVESSEGFLDEVGSQAL AGSY PSTVLQQID+VA
Sbjct: 361 IAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPF+DEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>ref|XP_002690086.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos
taurus].
Length = 453
Score = 777 bits (2006), Expect = 0.0
Identities = 402/453 (88%), Positives = 417/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGS SRFY PQDLEFTRLPNGLVIASLENYAPASR
Sbjct: 1 MKLLTRAGSLSRFYSLKVAPKVKATAAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYE+SNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLS+ STRE+MA
Sbjct: 61 IGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSMMSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLRDD++ILMEFLLNVT APEFRRWEVAALQ QLRIDKAVA QNPQA V+ENLHAA
Sbjct: 121 YTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAYVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTP +LH YVQNHFTSARMALIGLGVSHPVLKQVAE+FLN+
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNI 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKY GGEIR+QNGDSLVHAALVAESAA GSAEAN FSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANVFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG YTISQAASAGDVIK+AY+QVKT
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSN DVQAAKNKLKAGYLMSVESSEGFLDEVGSQAL AGSY PSTVLQQID+VA
Sbjct: 361 IAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPF+DEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>ref|XP_001789022.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos
taurus].
Length = 453
Score = 777 bits (2006), Expect = 0.0
Identities = 402/453 (88%), Positives = 417/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGS SRFY PQDLEFTRLPNGLVIASLENYAPASR
Sbjct: 1 MKLLTRAGSLSRFYSLKVAPKVKATAAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYE+SNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLS+ STRE+MA
Sbjct: 61 IGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSMMSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLRDD++ILMEFLLNVT APEFRRWEVAALQ QLRIDKAVA QNPQA V+ENLHAA
Sbjct: 121 YTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAYVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTP +LH YVQNHFTSARMALIGLGVSHPVLKQVAE+FLN+
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNI 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKY GGEIR+QNGDSLVHAALVAESAA GSAEAN FSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANVFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG YTISQAASAGDVIK+AY+QVKT
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSN DVQAAKNKLKAGYLMSVESSEGFLDEVGSQAL AGSY PSTVLQQID+VA
Sbjct: 361 IAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPF+DEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>ref|XP_001790174.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos
taurus].
Length = 453
Score = 777 bits (2006), Expect = 0.0
Identities = 402/453 (88%), Positives = 417/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGS SRFY PQDLEFTRLPNGLVIASLENYAPASR
Sbjct: 1 MKLLTRAGSLSRFYSLKVAPKVKATAAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYE+SNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLS+ STRE+MA
Sbjct: 61 IGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSMMSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLRDD++ILMEFLLNVT APEFRRWEVAALQ QLRIDKAVA QNPQA V+ENLHAA
Sbjct: 121 YTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAYVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTP +LH YVQNHFTSARMALIGLGVSHPVLKQVAE+FLN+
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNI 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKY GGEIR+QNGDSLVHAALVAESAA GSAEAN FSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANVFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG YTISQAASAGDVIK+AY+QVKT
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSN DVQAAKNKLKAGYLMSVESSEGFLDEVGSQAL AGSY PSTVLQQID+VA
Sbjct: 361 IAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPF+DEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>ref|XP_002697371.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos
taurus].
Length = 453
Score = 775 bits (2000), Expect = 0.0
Identities = 401/453 (88%), Positives = 418/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGS SRFY +PQDLEFTRLPNGLVIASLEN+APASR
Sbjct: 1 MKLLTRAGSLSRFYSLKVAPKVKATAAPAGVPPRPQDLEFTRLPNGLVIASLENHAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYE+SNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRE+MA
Sbjct: 61 IGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECL DD++ILMEFLLNVT APEFRRWEVAALQ QLRIDKAVAFQNPQA V+ENLHAA
Sbjct: 121 YTVECLWDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVAFQNPQAHVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTP +LH YVQNHFTSARMALIGLGVSHPVLKQVAE+FLN+
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNI 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKY GGEIR+QNGDSLVHAALVA+SAA GSAEAN FSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAQSAAIGSAEANVFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG YTISQAASAGDVIK+AY+QVKT
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSN VQAAKNKLKAGYLMSVESSEGFLDEVGSQAL AGSY PSTVLQQID+VA
Sbjct: 361 IAQGNLSNPGVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPF+DEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>ref|XP_001252309.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos
taurus].
Length = 453
Score = 775 bits (2000), Expect = 0.0
Identities = 401/453 (88%), Positives = 418/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGS SRFY +PQDLEFTRLPNGLVIASLEN+APASR
Sbjct: 1 MKLLTRAGSLSRFYSLKVAPKVKATAAPAGVPPRPQDLEFTRLPNGLVIASLENHAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYE+SNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRE+MA
Sbjct: 61 IGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECL DD++ILMEFLLNVT APEFRRWEVAALQ QLRIDKAVAFQNPQA V+ENLHAA
Sbjct: 121 YTVECLWDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVAFQNPQAHVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTP +LH YVQNHFTSARMALIGLGVSHPVLKQVAE+FLN+
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNI 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKY GGEIR+QNGDSLVHAALVA+SAA GSAEAN FSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAQSAAIGSAEANVFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG YTISQAASAGDVIK+AY+QVKT
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSN VQAAKNKLKAGYLMSVESSEGFLDEVGSQAL AGSY PSTVLQQID+VA
Sbjct: 361 IAQGNLSNPGVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPF+DEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 453
>ref|NP_001070432.1| mitochondrial-processing peptidase subunit alpha precursor [Bos
taurus].
Length = 525
Score = 150 bits (380), Expect = 3e-36
Identities = 114/437 (26%), Positives = 202/437 (46%), Gaps = 25/437 (5%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLL-RLASSLTTKGAS 357
+ + T L NGL +AS + +G+ I +GSRYE G +H L +LA S T + S
Sbjct: 66 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTERFDS 125
Query: 358 SFKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEF--RRWEVAA 531
+I +E GG ++R++ Y V ++ ++ L +V P E+A
Sbjct: 126 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDEEIEMAR 185
Query: 532 LQSQLRIDKAVAFQNPQAQVLENLHAAAYR-NALANSLYCPDYRIGKVTPDQLHYYVQNH 708
+ Q ++ +P+ + E +H AAYR N + +CP +GK+ D LH Y++N+
Sbjct: 186 MAVQFELEDLNMRPDPEPLLTEMVHEAAYRENTVGLHRFCPAENVGKMDRDVLHAYLRNY 245
Query: 709 FTSARMALIGLGVSHPVLKQVAERFL-------NMRGGLGLSGAKAKYRGGEI---RDQN 858
+T RM L G+GV H L + A ++L + + + A+Y GG + RD +
Sbjct: 246 YTPDRMVLAGVGVEHAQLVECARKYLLGTCPAWGTGAAVHVDRSVAQYTGGIVKLERDMS 305
Query: 859 GDS--------LVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKR---GSNATSSLYQ 1005
S L H + ES + + F+VL ++G G G + LY
Sbjct: 306 NVSLGPTPFPELTHIMIGLESCSFLEGDFIPFAVLNMMMGGGGSFSAGGPGKGMFTRLYL 365
Query: 1006 AVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDV 1185
V H ++ ++++ SY D+GL I+ + ++++ + +A G + ++
Sbjct: 366 NVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIVTREFVLMA-GTVDVVEL 424
Query: 1186 QAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKF 1365
+ AK +L + +M++E+ ++VG Q L S P + I V D+ A K
Sbjct: 425 ERAKTQLTSMLMMNLEARPVIFEDVGRQVLATRSRKLPHELCALIRDVKPEDIKRVASKM 484
Query: 1366 VSGRKSMAASGNLGHTP 1416
+ G+ ++AA G+L P
Sbjct: 485 LRGKPAVAALGDLSELP 501
>ref|NP_001029785.1| mitochondrial-processing peptidase subunit beta precursor [Bos
taurus].
Length = 490
Score = 134 bits (336), Expect = 3e-31
Identities = 109/422 (25%), Positives = 190/422 (45%), Gaps = 9/422 (2%)
Frame = +1
Query: 193 TRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKIT 372
T L NGL +AS ++ +GL+I AGSRYE+ N GT+H L + TK S +
Sbjct: 62 TCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 121
Query: 373 RGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRI 552
IE +G L+ ++RE Y + D+ +E L ++ E+ + +
Sbjct: 122 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 181
Query: 553 DKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMA 729
+ N Q V + LHA AY+N AL ++ P I + L Y+ H+ R+
Sbjct: 182 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV 241
Query: 730 LIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVHAALVA 891
L GVSH L ++A+ L+ G + K+ G EIR ++ L H A+
Sbjct: 242 LAAAGGVSHDELLELAKFHFGESLSTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAVAV 301
Query: 892 ESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 1068
E+ + V ++G G N +S L Q G + +FN SY+D
Sbjct: 302 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFNTSYTD 360
Query: 1069 SGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGF 1248
+GL+GIY + + A+ D++ + + +++ ++V AKN LK L+ ++ S
Sbjct: 361 TGLWGIYMVCEPATVADMLHVVQKEWMRLCT-SVTESEVARAKNLLKTNMLLQLDGSTPI 419
Query: 1249 LDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGHTPFVD 1425
+++G Q L + + +ID+V + K++ + ++AA G + P +
Sbjct: 420 CEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSPAVAAVGPIEQLPDFN 479
Query: 1426 EL 1431
++
Sbjct: 480 QI 481
>ref|XP_001789518.1| PREDICTED: mitochondrial-processing peptidase subunit beta-like [Bos
taurus].
Length = 490
Score = 132 bits (333), Expect = 7e-31
Identities = 109/422 (25%), Positives = 189/422 (44%), Gaps = 9/422 (2%)
Frame = +1
Query: 193 TRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKIT 372
T L NGL +AS ++ +GL+I AGSRYE+ N GT+H L + TK S +
Sbjct: 62 TCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 121
Query: 373 RGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRI 552
IE +G L+ ++RE Y + D+ +E L ++ E+ + +
Sbjct: 122 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 181
Query: 553 DKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMA 729
+ N Q V + LHA AY+N AL ++ P I + L Y+ H+ R+
Sbjct: 182 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV 241
Query: 730 LIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVHAALVA 891
L GVSH L +A+ L+ G + K+ G EIR ++ L H A+
Sbjct: 242 LAAAGGVSHDELLDLAKFHFGESLSTHKGEIPALPLCKFTGSEIRVRDDKMPLAHLAVAV 301
Query: 892 ESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 1068
E+ + V ++G G N +S L Q G + +FN SY+D
Sbjct: 302 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFNTSYTD 360
Query: 1069 SGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGF 1248
+GL+GIY + + A+ D++ + + +++ ++V AKN LK L+ ++ S
Sbjct: 361 TGLWGIYMVCEPATVADMLHVVQKEWMRLCT-SVTESEVARAKNLLKTNMLLQLDGSTPI 419
Query: 1249 LDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGHTPFVD 1425
+++G Q L + + +ID+V + K++ + ++AA G + P +
Sbjct: 420 CEDIGRQMLCYNRRIPIPELEARIDAVNAEVIREVCTKYIYDKSPAVAAVGPIEQLPDFN 479
Query: 1426 EL 1431
++
Sbjct: 480 QI 481
>ref|NP_777054.1| cytochrome b-c1 complex subunit 1, mitochondrial precursor [Bos
taurus].
Length = 480
Score = 109 bits (272), Expect = 9e-24
Identities = 102/434 (23%), Positives = 184/434 (42%), Gaps = 22/434 (5%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASS 360
+ + ++L NGL +AS ++ P +G++I AGSRYE N G + + + TK
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 361 FKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQS 540
+ + +E++G L+ STRE AY ++ L D+ +E L ++ + S
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQ-------NCSLEDS 159
Query: 541 QLRIDKAVAFQNPQAQ-------VLENLHAAAYRNA-LANSLYCPDYRIGKVTPDQLHYY 696
Q+ ++ V Q Q V LHA A++ LA S+ P + K++ L Y
Sbjct: 160 QIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 219
Query: 697 VQNHFTSARMALIGL-GVSHPVLKQVAERFLNMRGGLGLSG----------AKAKYRGGE 843
+ H+ + RM L G+ H L +A++ + GLSG + ++ G +
Sbjct: 220 LSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFS-----GLSGTYDEDAVPTLSPCRFTGSQ 274
Query: 844 I-RDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKG 1020
I ++G L H A+ E + A V ++G G SS ++A
Sbjct: 275 ICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT 334
Query: 1021 VHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKN 1200
FN Y+D+GL G + + S D++ Q + + + ++V KN
Sbjct: 335 NKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT-SATESEVLRGKN 393
Query: 1201 KLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVIN--AAKKFVSG 1374
L+ + ++ + +++G L G + + +I V DA V+ +K F
Sbjct: 394 LLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV-DARVVREVCSKYFYDQ 452
Query: 1375 RKSMAASGNLGHTP 1416
++A G + P
Sbjct: 453 CPAVAGFGPIEQLP 466
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,848,627
Number of extensions: 1532362
Number of successful extensions: 3770
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3756
Number of HSP's successfully gapped: 10
Length of query: 579
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 471
Effective length of database: 14,107,870
Effective search space: 6644806770
Effective search space used: 6644806770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003021
(1737 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536942.1| PREDICTED: similar to Ubiquinol-cytochrome-c re... 777 0.0
Alignment gi|XP_855496.1| PREDICTED: similar to Ubiquinol-cytochrome-c re... 402 e-112
Alignment gi|XP_861445.1| PREDICTED: similar to Ubiquinol-cytochrome-c re... 213 3e-65
Alignment gi|XP_854134.1| PREDICTED: similar to Ubiquinol-cytochrome-c re... 184 2e-46
Alignment gi|XP_537796.1| PREDICTED: similar to mitochondrial matrix proc... 149 8e-36
Alignment gi|XP_533104.2| PREDICTED: similar to Mitochondrial processing ... 137 3e-32
Alignment gi|XP_851209.1| PREDICTED: similar to ubiquinol-cytochrome c re... 108 1e-23
>ref|XP_536942.1| PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core
protein 2, mitochondrial precursor (Complex III subunit
II) isoform 1 [Canis familiaris].
Length = 453
Score = 777 bits (2007), Expect = 0.0
Identities = 398/453 (87%), Positives = 418/453 (92%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+ RAGS SRFY PQDLEFT+LPNGLVIASLENYAPASR
Sbjct: 1 MKLLRRAGSLSRFYSLKVAPKVKATAAPAGVPLHPQDLEFTKLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYEDSN+LGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRE+MA
Sbjct: 61 IGLFIKAGSRYEDSNHLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLRDD++ILMEFLLNVT +PEFRRWEVAALQSQLRIDKAVAFQNPQA VLENLHAA
Sbjct: 121 YTVECLRDDVDILMEFLLNVTTSPEFRRWEVAALQSQLRIDKAVAFQNPQAHVLENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTPD+LHYYVQNHFTSARMALIGLGV HPVLKQVAE+FLNM
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPDELHYYVQNHFTSARMALIGLGVGHPVLKQVAEQFLNM 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGL GAKA+YRGGEIR+QNGDSLVHAALVAE AA GS EANAFSVLQ+VLGAGPHVK
Sbjct: 241 RGGLGLPGAKARYRGGEIREQNGDSLVHAALVAEGAAIGSTEANAFSVLQYVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSN TSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAA+AGDVIK+AY+QVKT
Sbjct: 301 RGSNPTSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAAAAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
+AQGNLS+ DVQ AKNKLKA YLMSVESSEGFLDEVGSQALVAGSY P+TVLQQIDSVA
Sbjct: 361 VAQGNLSSVDVQVAKNKLKAAYLMSVESSEGFLDEVGSQALVAGSYTPPATVLQQIDSVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DAD++NAAKKFVSGRKSMAASGNLGHTPFVDEL
Sbjct: 421 DADIVNAAKKFVSGRKSMAASGNLGHTPFVDEL 453
>ref|XP_855496.1| PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core
protein 2, mitochondrial precursor (Complex III subunit
II) [Canis familiaris].
Length = 246
Score = 402 bits (1032), Expect = e-112
Identities = 204/233 (87%), Positives = 219/233 (93%)
Frame = +1
Query: 724 MALIGLGVSHPVLKQVAERFLNMRGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAA 903
MA IGLGVSHPVLKQV E+FLNMRG LGL GAKA+YRGGEIR+QNGDSLVHAALVAE AA
Sbjct: 1 MAFIGLGVSHPVLKQVVEQFLNMRGRLGLPGAKARYRGGEIREQNGDSLVHAALVAEGAA 60
Query: 904 TGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG 1083
TGS EANAFSVLQ+VLGAGPHVKRGSN TSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG
Sbjct: 61 TGSTEANAFSVLQYVLGAGPHVKRGSNPTSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG 120
Query: 1084 IYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVG 1263
IYTISQAA+AGDVIK+AY+QVKT+AQGNLS+ DVQ AKNKLKA YLMSVESSEGFLDEVG
Sbjct: 121 IYTISQAAAAGDVIKAAYNQVKTVAQGNLSSVDVQVAKNKLKAAYLMSVESSEGFLDEVG 180
Query: 1264 SQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRKSMAASGNLGHTPFV 1422
SQ LVAGSY+ P+TVLQQIDSVAD D++NAAKKFVSG+KSMAASGNLGHTP +
Sbjct: 181 SQVLVAGSYMPPATVLQQIDSVADTDIVNAAKKFVSGQKSMAASGNLGHTPLL 233
>ref|XP_861445.1| PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core
protein 2, mitochondrial precursor (Complex III subunit
II) isoform 3 [Canis familiaris].
Length = 167
Score = 213 bits (543), Expect(2) = 3e-65
Identities = 111/141 (78%), Positives = 119/141 (84%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+ RAGS SRFY PQDLEFT+LPNGLVIASLENYAPASR
Sbjct: 1 MKLLRRAGSLSRFYSLKVAPKVKATAAPAGVPLHPQDLEFTKLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYEDSN+LGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRE+MA
Sbjct: 61 IGLFIKAGSRYEDSNHLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVT 495
YTVECLRDD++ILMEFLLN++
Sbjct: 121 YTVECLRDDVDILMEFLLNMS 141
Score = 55.5 bits (132), Expect(2) = 3e-65
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +2
Query: 590 SLKICMLQLTEMPWLIPCTVLIIGLEK 670
SLKICMLQLTEMPWLIPCTVL GLEK
Sbjct: 141 SLKICMLQLTEMPWLIPCTVLTTGLEK 167
>ref|XP_854134.1| PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core
protein 2, mitochondrial precursor (Complex III subunit
II) [Canis familiaris].
Length = 142
Score = 184 bits (467), Expect = 2e-46
Identities = 94/110 (85%), Positives = 101/110 (91%)
Frame = +1
Query: 1102 AASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVA 1281
A+ GDVIK+AY+QVKT+AQGNLS+ DVQ AKNKLKA YLMSVESSEGFLDEV SQALVA
Sbjct: 33 ASHPGDVIKAAYNQVKTVAQGNLSSVDVQVAKNKLKAAYLMSVESSEGFLDEVRSQALVA 92
Query: 1282 GSYVQPSTVLQQIDSVADADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
GSY P+TVLQQIDSVADAD +NAAKKFVSGRKSMAASGNLGHTPFVDEL
Sbjct: 93 GSYTPPATVLQQIDSVADADTVNAAKKFVSGRKSMAASGNLGHTPFVDEL 142
>ref|XP_537796.1| PREDICTED: similar to mitochondrial matrix processing protease, alpha
subunit [Canis familiaris].
Length = 526
Score = 149 bits (376), Expect = 8e-36
Identities = 112/442 (25%), Positives = 204/442 (46%), Gaps = 25/442 (5%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLL-RLASSLTTKGAS 357
+ + T L NGL +AS + +G+ I +GSRYE G +H L +LA S T + S
Sbjct: 67 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTDRFES 126
Query: 358 SFKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEF--RRWEVAA 531
+I +E GG ++R++ Y V ++ ++ L +V P + E+
Sbjct: 127 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDKEIEMTR 186
Query: 532 LQSQLRIDKAVAFQNPQAQVLENLHAAAYR-NALANSLYCPDYRIGKVTPDQLHYYVQNH 708
+ Q ++ +P+ + E +H AAYR N + +CP I K+ + LH Y++N+
Sbjct: 187 MAVQFELEDLNMRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENIAKIDREVLHSYLRNY 246
Query: 709 FTSARMALIGLGVSHPVLKQVAERFL-------NMRGGLGLSGAKAKYRGGEI---RDQN 858
+T RM L G+GV H L + A ++L + + + A+Y GG + RD +
Sbjct: 247 YTPDRMVLAGVGVEHEHLVECARKYLLGTQPAWGCEKAVDVDRSVAQYTGGVVKLERDMS 306
Query: 859 GDS--------LVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKR---GSNATSSLYQ 1005
S L H + ES + + F+VL ++G G G + LY
Sbjct: 307 NVSLGPAPFPELTHIMIGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFTRLYL 366
Query: 1006 AVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDV 1185
V H ++ ++++ SY D+GL ++ + ++++ + +A G + ++
Sbjct: 367 NVLNRHHWMYNATSYHHSYEDTGLLCVHASADPRQVREMVEILTKEFILMA-GTVDVVEL 425
Query: 1186 QAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKF 1365
+ AK +L + +M++ES ++VG Q L S P + I SV D+ A +
Sbjct: 426 ERAKTQLMSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCALIRSVKPEDIRRVASQM 485
Query: 1366 VSGRKSMAASGNLGHTPFVDEL 1431
+ + ++AA G+L H P + +
Sbjct: 486 LCRKPAVAALGDLSHLPAYEHI 507
>ref|XP_533104.2| PREDICTED: similar to Mitochondrial processing peptidase beta
subunit, mitochondrial precursor (Beta-MPP) (P-52) [Canis
familiaris].
Length = 513
Score = 137 bits (345), Expect = 3e-32
Identities = 110/422 (26%), Positives = 191/422 (45%), Gaps = 9/422 (2%)
Frame = +1
Query: 193 TRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKIT 372
TRL NGL +AS ++ +GL+I AGSRYE+ N GT+H L + TK S +
Sbjct: 85 TRLDNGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 144
Query: 373 RGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRI 552
IE +G L+ ++RE Y + D+ +E L ++ E+ + +
Sbjct: 145 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 204
Query: 553 DKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMA 729
+ N Q V + LHA AY+N AL ++ P I + L Y+ H+ R+
Sbjct: 205 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV 264
Query: 730 LIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVHAALVA 891
L GVSH L ++A+ L+ G + K+ G EIR ++ L H A+
Sbjct: 265 LAAAGGVSHDELLELAKFHFGDSLSTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAVAV 324
Query: 892 ESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 1068
E+ + V ++G G N +S L Q G + +FN SY+D
Sbjct: 325 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFNTSYTD 383
Query: 1069 SGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGF 1248
+GL+GIY + + A+ D++ + + +++ ++V AKN LK L+ ++ S
Sbjct: 384 TGLWGIYMVCEPATIADMLHVVQKEWMRLCT-SITESEVARAKNLLKTNMLLQLDGSTPI 442
Query: 1249 LDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGHTPFVD 1425
+++G Q L + + +ID+V + K++ + ++AA G + P +
Sbjct: 443 CEDIGRQMLCYNRRIPIPELEARIDAVNAETIQEVCTKYIYDKSPALAAVGPIEQLPDFN 502
Query: 1426 EL 1431
++
Sbjct: 503 QI 504
>ref|XP_851209.1| PREDICTED: similar to ubiquinol-cytochrome c reductase core protein I
isoform 2 [Canis familiaris].
Length = 480
Score = 108 bits (271), Expect = 1e-23
Identities = 104/431 (24%), Positives = 185/431 (42%), Gaps = 19/431 (4%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASS 360
+ + + L NGL +AS ++ P +G++I GSRYE N G + L + TK
Sbjct: 47 ETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPG 106
Query: 361 FKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQS 540
+ + +E++G L+ STRE AY ++ L D+ +E L ++ + S
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQ-------NCSLEDS 159
Query: 541 QLRIDKAVAFQNPQAQ-------VLENLHAAAYRNA-LANSLYCPDYRIGKVTPDQLHYY 696
Q+ ++ V Q Q V + LHA A++ LA ++ P + K++ L Y
Sbjct: 160 QIEKERDVILQELQENDACMRDVVFDYLHATAFQGTPLAQAVEGPSGNVRKLSRADLTEY 219
Query: 697 VQNHFTSARMALIGL-GVSHPVLKQVAERFLNMRGGLGLSG-----AKAKYRGGEIRDQN 858
+ H+ + RM L GV H L +A++ + A ++ G EIR ++
Sbjct: 220 LSRHYKAPRMVLAAAGGVEHRQLLDLAQKHFSSVSETYTEDTVPTLAPCRFTGSEIRHRD 279
Query: 859 GD-SLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQA--VAKGVHQ 1029
L H A+ E + + A V ++G GS SS A VAK + Q
Sbjct: 280 DALPLAHVAIAVEGPGWANPDNVALQVANAIIGHYDCTYGGSTHLSSPLAAVSVAKKLCQ 339
Query: 1030 PFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLK 1209
F FN Y+++GL G + + + D++ Q + + + ++V KN L+
Sbjct: 340 SF--QTFNICYAETGLLGAHFVCDRMNIDDMMFFLQGQWMRLCT-SATESEVLRGKNILR 396
Query: 1210 AGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVIN--AAKKFVSGRKS 1383
+ ++ + +++G L G + + +I V DA V+ +K F +
Sbjct: 397 NALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV-DASVVREVCSKYFYDQCPA 455
Query: 1384 MAASGNLGHTP 1416
+A G + P
Sbjct: 456 VAGLGPIEQLP 466
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,878,362
Number of extensions: 1480068
Number of successful extensions: 3926
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3918
Number of HSP's successfully gapped: 8
Length of query: 579
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 471
Effective length of database: 15,274,216
Effective search space: 7194155736
Effective search space used: 7194155736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003021
(1737 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003357.2| cytochrome b-c1 complex subunit 2, mitochondria... 753 0.0
Alignment gi|NP_055975.1| mitochondrial-processing peptidase subunit alph... 147 3e-35
Alignment gi|NP_004270.2| mitochondrial-processing peptidase subunit beta... 129 9e-30
Alignment gi|NP_003356.2| cytochrome b-c1 complex subunit 1, mitochondria... 100 3e-21
>ref|NP_003357.2| cytochrome b-c1 complex subunit 2, mitochondrial precursor [Homo
sapiens].
Length = 453
Score = 753 bits (1943), Expect = 0.0
Identities = 386/453 (85%), Positives = 411/453 (90%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL+TRAGSFSRFY QPQDLEFT+LPNGLVIASLENY+P SR
Sbjct: 1 MKLLTRAGSFSRFYSLKVAPKVKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYED +NLGT+HLLRL SSLTTKGASSFKITRGIEAVGGKLSVT+TRE+MA
Sbjct: 61 IGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLR D++ILMEFLLNVT APEFRRWEVA LQ QL+IDKAVAFQNPQ V+ENLHAA
Sbjct: 121 YTVECLRGDVDILMEFLLNVTTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALAN LYCPDYRIGKVT ++LHY+VQNHFTSARMALIGLGVSHPVLKQVAE+FLNM
Sbjct: 181 AYRNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQVAEQFLNM 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKA YRGGEIR+QNGDSLVHAA VAESA GSAEANAFSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSN TS L+QAVAK QPFDVSAFNASYSDSGLFGIYTISQA +AGDVIK+AY+QVKT
Sbjct: 301 RGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKT 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSNTDVQAAKNKLKAGYLMSVESSE FL+EVGSQALVAGSY+ PSTVLQQIDSVA
Sbjct: 361 IAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
+AD+INAAKKFVSG+KSMAASGNLGHTPFVDEL
Sbjct: 421 NADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453
>ref|NP_055975.1| mitochondrial-processing peptidase subunit alpha precursor [Homo
sapiens].
Length = 525
Score = 147 bits (371), Expect = 3e-35
Identities = 114/442 (25%), Positives = 200/442 (45%), Gaps = 25/442 (5%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLL-RLASSLTTKGAS 357
+ + T L NGL +AS + +G+ I +GSRYE G +H L +LA S T + S
Sbjct: 66 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDS 125
Query: 358 SFKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEV--AA 531
+I +E GG ++R++ Y V ++ ++ L +V P EV
Sbjct: 126 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTR 185
Query: 532 LQSQLRIDKAVAFQNPQAQVLENLHAAAYR-NALANSLYCPDYRIGKVTPDQLHYYVQNH 708
+ Q ++ +P+ + E +H AAYR N + +CP + K+ + LH Y++N+
Sbjct: 186 MAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLRNY 245
Query: 709 FTSARMALIGLGVSHPVLKQVAERFL-------NMRGGLGLSGAKAKYRGGEI---RDQN 858
+T RM L G+GV H L A ++L + + + A+Y GG RD +
Sbjct: 246 YTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMS 305
Query: 859 GDS--------LVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKR---GSNATSSLYQ 1005
S L H + ES + + F+VL ++G G G S LY
Sbjct: 306 NVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYL 365
Query: 1006 AVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDV 1185
V H ++ ++++ SY D+GL I+ + ++++ + + G + ++
Sbjct: 366 NVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEF-ILMGGTVDTVEL 424
Query: 1186 QAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKF 1365
+ AK +L + +M++ES ++VG Q L S P + I +V DV A K
Sbjct: 425 ERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKM 484
Query: 1366 VSGRKSMAASGNLGHTPFVDEL 1431
+ G+ ++AA G+L P + +
Sbjct: 485 LRGKPAVAALGDLTDLPTYEHI 506
>ref|NP_004270.2| mitochondrial-processing peptidase subunit beta precursor [Homo
sapiens].
Length = 489
Score = 129 bits (324), Expect = 9e-30
Identities = 106/417 (25%), Positives = 187/417 (44%), Gaps = 9/417 (2%)
Frame = +1
Query: 193 TRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKIT 372
T L +GL +AS ++ +GL+I AGSRYE+ N GT+H L + TK S +
Sbjct: 61 TCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 120
Query: 373 RGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRI 552
IE +G L+ ++RE Y + D+ +E L ++ E+ + +
Sbjct: 121 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 180
Query: 553 DKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMA 729
+ N Q V + LHA AY+N AL ++ P I ++ L Y+ H+ R+
Sbjct: 181 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIV 240
Query: 730 LIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVHAALVA 891
L GVSH L +A+ L G + K+ G EIR ++ L H A+
Sbjct: 241 LAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAV 300
Query: 892 ESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 1068
E+ + V ++G G N +S L Q G + +FN SY+D
Sbjct: 301 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFNTSYTD 359
Query: 1069 SGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGF 1248
+GL+G+Y + ++++ D++ + + +++ ++V A+N LK L+ ++ S
Sbjct: 360 TGLWGLYMVCESSTVADMLHVVQKEWMRLCT-SVTESEVARARNLLKTNMLLQLDGSTPI 418
Query: 1249 LDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGHTP 1416
+++G Q L + + +ID+V + K++ R ++AA G + P
Sbjct: 419 CEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLP 475
>ref|NP_003356.2| cytochrome b-c1 complex subunit 1, mitochondrial precursor [Homo
sapiens].
Length = 480
Score = 100 bits (250), Expect = 3e-21
Identities = 99/410 (24%), Positives = 179/410 (43%), Gaps = 21/410 (5%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASS 360
+ + + L NGL +AS ++ P +G++I GSR+E N G + L + TK
Sbjct: 47 ETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPG 106
Query: 361 FKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQS 540
+ + +E++G L+ STRE AY ++ L D+ +E L ++ + S
Sbjct: 107 SALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQ-------NCSLEDS 159
Query: 541 QLRIDKAVAFQNPQAQ-------VLENLHAAAYRNA-LANSLYCPDYRIGKVTPDQLHYY 696
Q+ ++ V + Q V LHA A++ LA ++ P + K++ L Y
Sbjct: 160 QIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEY 219
Query: 697 VQNHFTSARMALIGL-GVSHPVLKQVAERFLNMRGGLGLSGAK--------AKYRGGEIR 849
+ H+ + RM L GV H L +A++ L GG+ + A+ ++ G EIR
Sbjct: 220 LSTHYKAPRMVLAAAGGVEHQQLLDLAQKHL---GGIPWTYAEDAVPTLTPCRFTGSEIR 276
Query: 850 DQNGDSL--VHAALVAESAATGSAEANAFSVLQHVLGAGPHVKRGSNATSS--LYQAVAK 1017
++ D+L H A+ E S + A V ++G G SS AVA
Sbjct: 277 HRD-DALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASGAVAN 335
Query: 1018 GVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAK 1197
+ Q F F+ Y+++GL G + + D++ Q + + + ++V K
Sbjct: 336 KLCQSF--QTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCT-SATESEVARGK 392
Query: 1198 NKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVI 1347
N L+ + ++ + +++G L G + + +I V DA V+
Sbjct: 393 NILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV-DASVV 441
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,905,239
Number of extensions: 1466772
Number of successful extensions: 3844
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3838
Number of HSP's successfully gapped: 4
Length of query: 579
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 471
Effective length of database: 14,737,052
Effective search space: 6941151492
Effective search space used: 6941151492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003021
(1737 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080175.1| cytochrome b-c1 complex subunit 2, mitochondria... 734 0.0
Alignment gi|NP_775272.1| mitochondrial-processing peptidase subunit alph... 145 7e-35
Alignment gi|NP_082707.1| mitochondrial-processing peptidase subunit beta... 134 2e-31
Alignment gi|NP_079683.2| cytochrome b-c1 complex subunit 1, mitochondria... 113 4e-25
>ref|NP_080175.1| cytochrome b-c1 complex subunit 2, mitochondrial precursor [Mus
musculus].
Length = 453
Score = 734 bits (1895), Expect = 0.0
Identities = 370/453 (81%), Positives = 411/453 (90%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKL++RAGSFSRFY QPQDLEFT+LPNGLVIASLENYAP SR
Sbjct: 1 MKLLSRAGSFSRFYSLKVAPKVKTSAAPGGVPLQPQDLEFTKLPNGLVIASLENYAPLSR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLF+KAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT+TRE+MA
Sbjct: 61 IGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVE +R DIEILMEFLLNVT APEFRRWEVAAL+SQL+IDKAVAFQN Q +++ENLH
Sbjct: 121 YTVEGIRSDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDKAVAFQNSQTRIIENLHDV 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AY+NALAN LYCPDYR+GK+T ++LHY+VQNHFTSARMAL+GLGVSH VLKQVAE+FLNM
Sbjct: 181 AYKNALANPLYCPDYRMGKITSEELHYFVQNHFTSARMALVGLGVSHSVLKQVAEQFLNM 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGL+GAKAKYRGGEIR+QNGD+LVHAA+VAESAA G+AEANAFSVLQH+LGAGPH+K
Sbjct: 241 RGGLGLAGAKAKYRGGEIREQNGDNLVHAAIVAESAAIGNAEANAFSVLQHLLGAGPHIK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RG+N TS L Q+VAKG HQPFDVSAFNASYSDSGLFGIYTISQAA+AG+VI +AY+QVK
Sbjct: 301 RGNNTTSLLSQSVAKGSHQPFDVSAFNASYSDSGLFGIYTISQAAAAGEVINAAYNQVKA 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
+AQGNLS+ DVQAAKNKLKAGYLMSVE+SEGFL E+GSQAL AGSY+ PSTVLQQIDSVA
Sbjct: 361 VAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQALAAGSYMPPSTVLQQIDSVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADV+ AAKKFVSG+KSMAASGNLGHTPF+DEL
Sbjct: 421 DADVVKAAKKFVSGKKSMAASGNLGHTPFLDEL 453
>ref|NP_775272.1| mitochondrial-processing peptidase subunit alpha precursor [Mus
musculus].
Length = 524
Score = 145 bits (367), Expect = 7e-35
Identities = 113/442 (25%), Positives = 204/442 (46%), Gaps = 25/442 (5%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLL-RLASSLTTKGAS 357
+ + T L NGL +AS + +G+ I +GSRYE G +H L +LA S T + S
Sbjct: 65 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDS 124
Query: 358 SFKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEF--RRWEVAA 531
+I +E GG ++R++ Y V ++ +++ L +V P E+
Sbjct: 125 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVVLHPRLTDEEIEMTR 184
Query: 532 LQSQLRIDKAVAFQNPQAQVLENLHAAAYR-NALANSLYCPDYRIGKVTPDQLHYYVQNH 708
+ Q ++ +P+ + E +H AA+R N + +CP I K+ + LH Y++N+
Sbjct: 185 MAVQFELEDLNMRPDPEPLLTEMIHEAAFRENTVGLHRFCPVENIAKIDREVLHSYLKNY 244
Query: 709 FTSARMALIGLGVSHPVLKQVAERFL-------NMRGGLGLSGAKAKYRGGEI---RDQN 858
+T RM L G+GV H L + A ++L G + + + A+Y GG I RD +
Sbjct: 245 YTPDRMVLAGVGVEHEHLVECARKYLVGAEPAWGAPGTVDVDRSVAQYTGGIIKVERDMS 304
Query: 859 GDS--------LVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKR---GSNATSSLYQ 1005
S L H + ES + + F+VL ++G G G S LY
Sbjct: 305 NVSLGPTPIPELTHIMVGLESCSFLEDDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYL 364
Query: 1006 AVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDV 1185
V H ++ ++++ SY D+GL I+ + ++++ + + + + ++
Sbjct: 365 NVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGR-TVDLVEL 423
Query: 1186 QAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKF 1365
+ AK +L + +M++ES ++VG Q L S P + I +V D+ A K
Sbjct: 424 ERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKM 483
Query: 1366 VSGRKSMAASGNLGHTPFVDEL 1431
+ G+ ++AA G+L P + +
Sbjct: 484 LRGKPAVAALGDLTDLPTYEHI 505
>ref|NP_082707.1| mitochondrial-processing peptidase subunit beta precursor [Mus
musculus].
Length = 489
Score = 134 bits (337), Expect = 2e-31
Identities = 108/427 (25%), Positives = 193/427 (45%), Gaps = 10/427 (2%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASS 360
+ + T L NGL +AS + +GL+I AGSRYE+ N GT+H L + TK S
Sbjct: 57 ETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQ 116
Query: 361 FKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQS 540
+ IE +G L+ ++RE Y + D+ +E L ++ E+ +
Sbjct: 117 LDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERG 176
Query: 541 QLRIDKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTS 717
+ + N Q V + LHA AY+N AL ++ P I + L Y+ H+
Sbjct: 177 VILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKG 236
Query: 718 ARMALIGL-GVSHPVLKQVA-----ERFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVH 876
R+ L GV H L ++A + + +G + + K+ G EIR ++ L H
Sbjct: 237 PRIVLAAAGGVCHNELLELAKFHFGDSLCSHKGAIP-ALPPCKFTGSEIRVRDDKMPLAH 295
Query: 877 AALVAESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFN 1053
A+ E+ + V ++G G N +S L Q G + +FN
Sbjct: 296 LAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFN 354
Query: 1054 ASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVE 1233
SY+D+GL+G+Y + + A+ D++ ++ K + +++ ++V AKN LK L+ ++
Sbjct: 355 TSYTDTGLWGLYMVCEQATVADMLHVVQNEWKRLCT-DVTESEVARAKNLLKTNMLLQLD 413
Query: 1234 SSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGH 1410
S +++G Q L + + +ID+V V K++ + ++AA G +
Sbjct: 414 GSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAIAALGPIER 473
Query: 1411 TPFVDEL 1431
P +++
Sbjct: 474 LPDFNQI 480
>ref|NP_079683.2| cytochrome b-c1 complex subunit 1, mitochondrial precursor [Mus
musculus].
Length = 480
Score = 113 bits (283), Expect = 4e-25
Identities = 97/417 (23%), Positives = 181/417 (43%), Gaps = 11/417 (2%)
Frame = +1
Query: 199 LPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRG 378
L NGL +AS ++ +G++I AGSRYE N G + L + TK + +
Sbjct: 53 LDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKE 112
Query: 379 IEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDK 558
+E++G L+ STRE AY ++ L D+ ++E L ++ ++ + + +
Sbjct: 113 VESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREM 172
Query: 559 AVAFQNPQAQVLENLHAAAYRNA-LANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALI 735
+ Q V + LHA A++ LA ++ P + +++ L Y+ H+ + RM L
Sbjct: 173 QENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRHYKAPRMVLA 232
Query: 736 GL-GVSHPVLKQVAERFLNMRGGLGLSGA-----KAKYRGGEIRDQNGD-SLVHAALVAE 894
GV H L +A++ L+ + A ++ G EIR ++ L H A+ E
Sbjct: 233 AAGGVEHQQLLDLAQKHLSSVSRVYEEDAVPGLTPCRFTGSEIRHRDDALPLAHVAIAVE 292
Query: 895 SAATGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSG 1074
+ + V ++G G SS +VA FN SYSD+G
Sbjct: 293 GPGWANPDNVTLQVANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTG 352
Query: 1075 LFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLD 1254
L G + + A S D++ Q + + + ++V KN L+ + ++ + +
Sbjct: 353 LLGAHFVCDAMSIDDMVFFLQGQWMRLCT-SATESEVTRGKNILRNALVSHLDGTTPVCE 411
Query: 1255 EVGSQALVAGSYV---QPSTVLQQIDSVADADVINAAKKFVSGRKSMAASGNLGHTP 1416
++G L G + + + +Q++D+ D+ +K F ++A G + P
Sbjct: 412 DIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDI--CSKYFYDQCPAVAGYGPIEQLP 466
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,147,146
Number of extensions: 1254486
Number of successful extensions: 3263
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3256
Number of HSP's successfully gapped: 4
Length of query: 579
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 472
Effective length of database: 12,403,707
Effective search space: 5854549704
Effective search space used: 5854549704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003021
(1737 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124603.2| PREDICTED: cytochrome b-c1 complex subunit 2... 828 0.0
Alignment gi|XP_003354625.1| PREDICTED: cytochrome b-c1 complex subunit 2... 135 5e-32
Alignment gi|XP_003361114.1| PREDICTED: mitochondrial-processing peptidas... 133 4e-31
Alignment gi|XP_003130289.1| PREDICTED: mitochondrial-processing peptidas... 133 4e-31
Alignment gi|XP_001926664.3| PREDICTED: cytochrome b-c1 complex subunit 1... 115 6e-26
Alignment gi|XP_003362232.1| PREDICTED: mitochondrial-processing peptidas... 78 1e-14
>ref|XP_003124603.2| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Sus
scrofa].
Length = 453
Score = 828 bits (2140), Expect = 0.0
Identities = 432/453 (95%), Positives = 433/453 (95%)
Frame = +1
Query: 73 MKLITRAGSFSRFYXXXXXXXXXXXXXXXXXXXQPQDLEFTRLPNGLVIASLENYAPASR 252
MKLITRAGSFSRFY QPQDLEFTRLPNGLVIASLENYAPASR
Sbjct: 1 MKLITRAGSFSRFYSLKVAPKALASAAPAGVPLQPQDLEFTRLPNGLVIASLENYAPASR 60
Query: 253 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 432
IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA
Sbjct: 61 IGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMA 120
Query: 433 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 612
YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA
Sbjct: 121 YTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAA 180
Query: 613 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 792
AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM
Sbjct: 181 AYRNALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMALIGLGVSHPVLKQVAERFLNM 240
Query: 793 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 972
RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK
Sbjct: 241 RGGLGLSGAKAKYRGGEIRDQNGDSLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVK 300
Query: 973 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKT 1152
RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVK
Sbjct: 301 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKA 360
Query: 1153 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVA 1332
IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSY+QPSTVLQQIDSVA
Sbjct: 361 IAQGNLSNTDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALVAGSYMQPSTVLQQIDSVA 420
Query: 1333 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 1431
DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL
Sbjct: 421 DADVINAAKKFVSGRKSMAASGNLGHTPFVDEL 453
>ref|XP_003354625.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Sus
scrofa].
Length = 70
Score = 135 bits (341), Expect = 5e-32
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +1
Query: 1222 MSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRKSMAASGN 1401
MSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRKSMAASGN
Sbjct: 1 MSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRKSMAASGN 60
Query: 1402 LGHTPFVDEL 1431
LGHTPFVDEL
Sbjct: 61 LGHTPFVDEL 70
>ref|XP_003361114.1| PREDICTED: mitochondrial-processing peptidase subunit beta-like [Sus
scrofa].
Length = 573
Score = 133 bits (334), Expect = 4e-31
Identities = 109/422 (25%), Positives = 190/422 (45%), Gaps = 9/422 (2%)
Frame = +1
Query: 193 TRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKIT 372
T L NGL +AS ++ +GL+I AGSRYE+ N GT+H L + TK S +
Sbjct: 145 TCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 204
Query: 373 RGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRI 552
IE +G L+ ++RE Y + D+ +E L ++ E+ + +
Sbjct: 205 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 264
Query: 553 DKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMA 729
+ N Q V + LHA AY+N AL ++ P I + L Y+ H+ R+
Sbjct: 265 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV 324
Query: 730 LIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVHAALVA 891
L GVSH L ++A+ L+ G + K+ G EIR ++ L H A+
Sbjct: 325 LAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAV 384
Query: 892 ESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 1068
E+ + V ++G G N +S L Q G + +FN SY+D
Sbjct: 385 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFNTSYTD 443
Query: 1069 SGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGF 1248
+GL+GIY + + A+ D++ + + +++ ++V AKN LK L+ ++ S
Sbjct: 444 TGLWGIYMVCEPATVADMLHVVQKEWMRLCT-SVTESEVARAKNLLKTNMLLQLDGSTPI 502
Query: 1249 LDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGHTPFVD 1425
+++G Q L + + +ID+V + K++ + ++AA G + P +
Sbjct: 503 CEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYDKSPAVAAVGPIEQLPDFN 562
Query: 1426 EL 1431
++
Sbjct: 563 QI 564
>ref|XP_003130289.1| PREDICTED: mitochondrial-processing peptidase subunit beta [Sus
scrofa].
Length = 489
Score = 133 bits (334), Expect = 4e-31
Identities = 109/422 (25%), Positives = 190/422 (45%), Gaps = 9/422 (2%)
Frame = +1
Query: 193 TRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKIT 372
T L NGL +AS ++ +GL+I AGSRYE+ N GT+H L + TK S +
Sbjct: 61 TCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLE 120
Query: 373 RGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQSQLRI 552
IE +G L+ ++RE Y + D+ +E L ++ E+ + +
Sbjct: 121 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 180
Query: 553 DKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTPDQLHYYVQNHFTSARMA 729
+ N Q V + LHA AY+N AL ++ P I + L Y+ H+ R+
Sbjct: 181 EMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV 240
Query: 730 LIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGEIRDQNGD-SLVHAALVA 891
L GVSH L ++A+ L+ G + K+ G EIR ++ L H A+
Sbjct: 241 LAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAV 300
Query: 892 ESAATGSAEANAFSVLQHVLGAGPH-VKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 1068
E+ + V ++G G N +S L Q G + +FN SY+D
Sbjct: 301 EAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHG-NLCHSFQSFNTSYTD 359
Query: 1069 SGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEGF 1248
+GL+GIY + + A+ D++ + + +++ ++V AKN LK L+ ++ S
Sbjct: 360 TGLWGIYMVCEPATVADMLHVVQKEWMRLCT-SVTESEVARAKNLLKTNMLLQLDGSTPI 418
Query: 1249 LDEVGSQALVAGSYVQPSTVLQQIDSVADADVINAAKKFVSGRK-SMAASGNLGHTPFVD 1425
+++G Q L + + +ID+V + K++ + ++AA G + P +
Sbjct: 419 CEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYDKSPAVAAVGPIEQLPDFN 478
Query: 1426 EL 1431
++
Sbjct: 479 QI 480
>ref|XP_001926664.3| PREDICTED: cytochrome b-c1 complex subunit 1, mitochondrial [Sus
scrofa].
Length = 480
Score = 115 bits (289), Expect = 6e-26
Identities = 102/429 (23%), Positives = 184/429 (42%), Gaps = 17/429 (3%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLLRLASSLTTKGASS 360
+ + ++L NGL +AS ++ P +G++I AGSRYE+ N G + + + TK
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYENEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 361 FKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQS 540
+ + +E++G L+ STRE AY ++ L D+ +E L ++ + S
Sbjct: 107 SALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQ-------NCSLEDS 159
Query: 541 QLRIDKAVAFQNPQAQ-------VLENLHAAAYRNA-LANSLYCPDYRIGKVTPDQLHYY 696
Q+ ++ V Q Q V + LHA A++ LA S+ P + K++ L Y
Sbjct: 160 QIEKERDVILQELQENDSSMRDVVFDYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 219
Query: 697 VQNHFTSARMALIGL-GVSHPVLKQVAERFLNMRGGLGLSGA-----KAKYRGGEIRDQN 858
V H+ + RM L GV H L +A++ + G + A ++ G EIR ++
Sbjct: 220 VSQHYKAPRMVLAAAGGVEHRQLLDLAQKHFSSLSGTYVEDAVPAFTPCRFTGSEIRHRD 279
Query: 859 GD-SLVHAALVAESAATGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPF 1035
L H A+ E + + V ++G G SS +VA
Sbjct: 280 DALPLAHVAIAVEGPGWANPDNVPLQVANAIIGHYDSTYGGGTHMSSTLASVAATRKLCQ 339
Query: 1036 DVSAFNASYSDSGLFGIYTISQAASAGDVIKSAYDQVKTIAQGNLSNTDVQAAKNKLKAG 1215
FN Y+++GL G + + S D++ Q + + + ++V KN L+
Sbjct: 340 SFQTFNICYAETGLLGAHFVCDNMSIDDMMFFLQGQWMRLCT-SATESEVVRGKNILRNA 398
Query: 1216 YLMSVESSEGFLDEVGSQALVAGSYVQPSTVLQQIDSVADADVIN--AAKKFVSGRKSMA 1389
+ ++ + +++G L G + + +I V DA V+ +K F ++A
Sbjct: 399 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV-DASVVREVCSKYFYDQCPAVA 457
Query: 1390 ASGNLGHTP 1416
G + P
Sbjct: 458 GLGPIEQLP 466
>ref|XP_003362232.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like
[Sus scrofa].
Length = 395
Score = 78.2 bits (191), Expect = 1e-14
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 2/207 (0%)
Frame = +1
Query: 181 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLL-RLASSLTTKGAS 357
+ + T L NGL +AS + + + I +GSRYE G +H L +LA S T + AS
Sbjct: 45 ETKVTTLDNGLRVASQNKFGQFCLLPVLINSGSRYEAKYLSGIAHFLEKLAFSSTDRFAS 104
Query: 358 SFKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAAPEFRRWEVAALQ 537
+I +E GG ++R++ Y V ++ ++ L +V P E+
Sbjct: 105 KDEILLTLEKHGGICDCQTSRDTTMYAVSANSKGLDTVVGLLADVVLHPRLTDEELE--M 162
Query: 538 SQLRIDKAVAFQNPQAQVLENLHAAAYRNA-LANSLYCPDYRIGKVTPDQLHYYVQNHFT 714
+++ + + N + E +H + A L+ CP + K+ +LH Y++N++T
Sbjct: 163 TRMAVQFELEDLNMRPDPXEMIHQVTWARATLSLQRLCPAENVAKMDRAELHAYLRNYYT 222
Query: 715 SARMALIGLGVSHPVLKQVAERFLNMR 795
RM L +GV H L + A + L R
Sbjct: 223 PDRMVLAAVGVEHQHLVECARKHLLAR 249
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,677,894
Number of extensions: 1119815
Number of successful extensions: 2406
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2399
Number of HSP's successfully gapped: 6
Length of query: 579
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 475
Effective length of database: 8,754,644
Effective search space: 4158455900
Effective search space used: 4158455900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003021
(1737 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 507 e-141
>Sscrofa_Chr03
|| Length = 144787322
Score = 507 bits (256), Expect = e-141
Identities = 279/289 (96%)
Strand = Plus / Minus
Query: 1346 taaacgctgcaaagaagtttgtttctggccggaagtcaatggcagcaagcggaaatttgg 1405
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24699914 taaaggctgcaaagaagtttgtttctggccggaagtcaatggcagcaagcggaaatttgg 24699855
Query: 1406 gtcatacacctttcgttgatgagttgtaatattgaaacatgttgcaggaaagagctgaac 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24699854 gtcatacacctttcgttgatgagttgtaatattgaaacatgttgcaggaaagagctgaac 24699795
Query: 1466 attttctcaaccctgagcagcaaatacgtgaaggtgaaaagcctctaatgtaacatttat 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24699794 attttctcaaccctgagcagcaaatacgtgaaggtgaaaagcctctaatgtaacatttat 24699735
Query: 1526 cnnnnnnnccaatgagattaaatatcgtaaagcataaatgcaagtaactgttcccagatg 1585
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24699734 ctttttttccaatgagattaaatatcgtaaagcataaatgcaagtaactgttcccagctg 24699675
Query: 1586 gcctaaagtcaataaaacattatatttaaatgtttttcttagagttccc 1634
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24699674 acctaaagtcaataaaacattatatttaaatgtttttcttagagttccc 24699626
Score = 504 bits (254), Expect = e-140
Identities = 277/287 (96%)
Strand = Plus / Plus
Query: 1346 taaacgctgcaaagaagtttgtttctggccggaagtcaatggcagcaagcggaaatttgg 1405
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24474092 taaaggctgcaaagaagtttgtttctggccggaagtcaatggcagcaagcggaaatttgg 24474151
Query: 1406 gtcatacacctttcgttgatgagttgtaatattgaaacatgttgcaggaaagagctgaac 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24474152 gtcatacacctttcgttgatgagttgtaatattgaaacatgttgcaggaaagagctgaac 24474211
Query: 1466 attttctcaaccctgagcagcaaatacgtgaaggtgaaaagcctctaatgtaacatttat 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24474212 attttctcaaccctgagcagcaaatacgtgaaggtgaaaagcctctaatgtaacatttat 24474271
Query: 1526 cnnnnnnnccaatgagattaaatatcgtaaagcataaatgcaagtaactgttcccagatg 1585
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24474272 ctttttttccaatgagattaaatatcgtaaagcataaatgcaagtaactgttcccagctg 24474331
Query: 1586 gcctaaagtcaataaaacattatatttaaatgtttttcttagagttc 1632
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24474332 acctaaagtcaataaaacattatatttaaatgtttttcttagagttc 24474378
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 837 aggtgaaattcgagaccagaatggagacagtctcgtccatgctgctcttgtagcagaaag 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24462515 aggtgaaattcgagaccagaatggagacagtctcgtccatgctgctcttgtagcagaaag 24462574
Query: 897 tgctgccacgggaagtgcagaagcaaatgcatttagtgttctgcagcatgtccttggtgc 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24462575 tgctgccacgggaagtgcagaagcaaatgcatttagtgttctgcagcatgtccttggtgc 24462634
Query: 957 tggaccacatgttaagaggggcagcaatgccaccagctctctataccaggctgtcgccaa 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24462635 tggaccacatgttaagaggggcagcaatgccaccagctctctataccaggctgtcgccaa 24462694
Query: 1017 gggagttcaccagccatttgatgt 1040
||||||||||||||||||||||||
Sbjct: 24462695 gggagttcaccagccatttgatgt 24462718
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 837 aggtgaaattcgagaccagaatggagacagtctcgtccatgctgctcttgtagcagaaag 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24711132 aggtgaaattcgagaccagaatggagacagtctcgtccatgctgctcttgtagcagaaag 24711073
Query: 897 tgctgccacgggaagtgcagaagcaaatgcatttagtgttctgcagcatgtccttggtgc 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24711072 tgctgccacgggaagtgcagaagcaaatgcatttagtgttctgcagcatgtccttggtgc 24711013
Query: 957 tggaccacatgttaagaggggcagcaatgccaccagctctctataccaggctgtcgccaa 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24711012 tggaccacatgttaagaggggcagcaatgccaccagctctctataccaggctgtcgccaa 24710953
Query: 1017 gggagttcaccagccatttgatgt 1040
||||||||||||||||||||||||
Sbjct: 24710952 gggagttcaccagccatttgatgt 24710929
Score = 299 bits (151), Expect = 3e-78
Identities = 154/155 (99%)
Strand = Plus / Minus
Query: 1197 gaacaagctgaaagccgggtacctaatgtcagtggagtcttctgagggtttcctggatga 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24701579 gaacaagctgaaagccgggtacctaatgtcagtggagtcttctgagggtttcctggatga 24701520
Query: 1257 agttgggtcccaggctctagttgctggttcgtacgtgcagccatccacggtccttcagca 1316
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 24701519 agttgggtcccaggctctagttgctggttcgtacatgcagccatccacggtccttcagca 24701460
Query: 1317 gattgattcagtagctgacgctgatgttataaacg 1351
|||||||||||||||||||||||||||||||||||
Sbjct: 24701459 gattgattcagtagctgacgctgatgttataaacg 24701425
Score = 293 bits (148), Expect = 2e-76
Identities = 151/152 (99%)
Strand = Plus / Minus
Query: 188 agtttaccagattaccaaatggtttggtgatcgcatctctcgaaaactatgctcctgcat 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24726685 agtttaccagattaccaaatggtttggtgatcgcatctctcgaaaactatgctcctgcat 24726626
Query: 248 caagaattggtttgttcattaaagcaggcagtagatatgaggactccaacaatttaggaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24726625 caagaattggtttgttcattaaagcaggcagtagatatgaggactccaacaatttaggaa 24726566
Query: 308 cctctcatctgcttcgtcttgcatccagtttg 339
|||||||||| |||||||||||||||||||||
Sbjct: 24726565 cctctcatctccttcgtcttgcatccagtttg 24726534
Score = 291 bits (147), Expect = 6e-76
Identities = 153/155 (98%)
Strand = Plus / Plus
Query: 1197 gaacaagctgaaagccgggtacctaatgtcagtggagtcttctgagggtttcctggatga 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24472635 gaacaagctgaaagccgggtacctaatgtcagtggagtcttctgagggtttcctggatga 24472694
Query: 1257 agttgggtcccaggctctagttgctggttcgtacgtgcagccatccacggtccttcagca 1316
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24472695 agttgggtctcaggctctagttgctggttcttacgtgcagccatccacggtccttcagca 24472754
Query: 1317 gattgattcagtagctgacgctgatgttataaacg 1351
|||||||||||||||||||||||||||||||||||
Sbjct: 24472755 gattgattcagtagctgacgctgatgttataaacg 24472789
Score = 248 bits (125), Expect = 9e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 462 tgagatcctgatggagttcctgctcaatgtcaccgcagcaccagaatttcgtcgctggga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24723390 tgagatcctgatggagttcctgctcaatgtcaccgcagcaccagaatttcgtcgctggga 24723331
Query: 522 ggtagctgccctgcagtctcagctaaggattgataaagctgtggcttttcagaatccaca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24723330 ggtagctgccctgcagtctcagctaaggattgataaagctgtggcttttcagaatccaca 24723271
Query: 582 ggctc 586
|||||
Sbjct: 24723270 ggctc 24723266
Score = 208 bits (105), Expect = 8e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1 attcccgccctccgccaccatcttgctctcctgtaaggcggttgtgaccgcgggtccgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24729589 attcccgccctccgccaccatcttgctctcctgtaaggcggttgtgaccgcgggtccgag 24729530
Query: 61 caatcttaagccatgaagcttataaccagagccggatccttctcg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24729529 caatcttaagccatgaagcttataaccagagccggatccttctcg 24729485
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 587 aggtccttgaaaatttgcatgctgcagcttaccgaaatgccttggctaattccttgtact 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24720427 aggtccttgaaaatttgcatgctgcagcttaccgaaatgccttggctaattccttgtact 24720368
Query: 647 gtcctgattataggattggaaaagtgacaccagatcag 684
||||||||||||||||||||||||||||||||||||||
Sbjct: 24720367 gtcctgattataggattggaaaagtgacaccagatcag 24720330
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 105 gagattttattctctcaaagttgcccccaaagctttggccagcgctgcccctgcaggagt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24726865 gagattttattctctcaaagttgcccccaaagctttggccagcgctgcccctgcaggagt 24726806
Query: 165 gcctctacagcctcaggaccttgag 189
|||||||||||||||||||||||||
Sbjct: 24726805 gcctctacagcctcaggaccttgag 24726781
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 1039 gtttctgcttttaacgccagttactcagattctggactctttgggatttatactatctct 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24707884 gtttctgcttttaacgccagttactcagattctggactctttgggatttatactatctct 24707825
Query: 1099 caggctgcatctgctggagatgt 1121
|||||||||||||||||||||||
Sbjct: 24707824 caggctgcatctgctggagatgt 24707802
Score = 157 bits (79), Expect = 2e-35
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1039 gtttctgcttttaacgccagttactcagattctggactctttgggatttatactatctct 1098
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24465760 gtttctgcttttaacgccagttactcagattctggactcttcgggatttatactatctct 24465819
Query: 1099 caggctgcatctgctggagatgt 1121
|||||||||||||||||||||||
Sbjct: 24465820 caggctgcatctgctggagatgt 24465842
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1120 gttatcaagtctgcctatgaccaagtaaaaacaattgctcaaggaaacctttctaataca 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24469625 gttatcaagtctgcctatgaccaagtaaaaacaattgctcaaggaaacctttctaataca 24469684
Query: 1180 gatgtccaagctgccaag 1197
||||||||||||||||||
Sbjct: 24469685 gatgtccaagctgccaag 24469702
Score = 149 bits (75), Expect = 6e-33
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 742 ggtgtgagtcatcctgttctaaagcaagtggccgaacggtttctcaacatgannnnnnnn 801
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24462157 ggtgtgagtcatcctgttctaaagcaagtggccgaacggtttctcaacatgagggggggg 24462216
Query: 802 cttggtttatctggcgcaaaggccaagtaccgtggaggt 840
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24462217 cttggtttatctggcgcaaaggccaagtaccgtggaggt 24462255
Score = 149 bits (75), Expect = 6e-33
Identities = 91/99 (91%)
Strand = Plus / Minus
Query: 742 ggtgtgagtcatcctgttctaaagcaagtggccgaacggtttctcaacatgannnnnnnn 801
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24711492 ggtgtgagtcatcctgttctaaagcaagtggccgaacggtttctcaacatgagggggggg 24711433
Query: 802 cttggtttatctggcgcaaaggccaagtaccgtggaggt 840
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24711432 cttggtttatctggcgcaaaggccaagtaccgtggaggt 24711394
Score = 147 bits (74), Expect = 2e-32
Identities = 77/78 (98%)
Strand = Plus / Minus
Query: 1120 gttatcaagtctgcctatgaccaagtaaaaacaattgctcaaggaaacctttctaataca 1179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24704325 gttatcaagtctgcctatgaccaagtaaaagcaattgctcaaggaaacctttctaataca 24704266
Query: 1180 gatgtccaagctgccaag 1197
||||||||||||||||||
Sbjct: 24704265 gatgtccaagctgccaag 24704248
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 339 gactacaaaaggagcttcatctttcaagataacccgtggaatcgaagcagttggtggtaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24725518 gactacaaaaggagcttcatctttcaagataacccgtggaatcgaagcagttggtggtaa 24725459
Query: 399 attaag 404
||||||
Sbjct: 24725458 attaag 24725453
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 681 tcagttacattactatgtacagaaccatttcacaagtgcaagaatggctttgattggact 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24715365 tcagttacattactatgtacagaaccatttcacaagtgcaagaatggctttgattggact 24715306
Query: 741 tggt 744
||||
Sbjct: 24715305 tggt 24715302
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 403 agtgtgacttccacaagggaaagcatggcttacacagtggaatgtctgcgagatgatat 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24723670 agtgtgacttccacaagggaaagcatggcttacacagtggaatgtctgcgagatgatat 24723612
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,919,177
Number of extensions: 281
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 22
Length of query: 1737
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1715
Effective length of database: 2,808,408,574
Effective search space: 4816420704410
Effective search space used: 4816420704410
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)