Animal-Genome cDNA 20110601C-003036

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003036
         (1427 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001017933.1| short/branched chain specific acyl-CoA dehyd...   675   0.0  
Alignment   gi|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase,...   278   1e-74
Alignment   gi|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial ...   250   2e-66
Alignment   gi|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase...   232   7e-61
Alignment   gi|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mito...   214   2e-55
Alignment   gi|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial ...   211   1e-54
Alignment   gi|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase...   209   4e-54
Alignment   gi|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, ...   189   7e-48
Alignment   gi|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial pr...   152   9e-37
Alignment   gi|NP_001179221.1| acyl-CoA dehydrogenase family member 10 [Bos...   125   1e-28

>ref|NP_001017933.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
            [Bos taurus].
          Length = 432

 Score =  675 bits (1742), Expect = 0.0
 Identities = 336/415 (80%), Positives = 370/415 (89%), Gaps = 1/415 (0%)
 Frame = +3

Query: 159  NFPTCLSSWKHPPRVLKSSQP-APLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIA 335
            NFP+CLSSWK PP  L SSQ  A LK T+NG   +PLQTFTDEEMMIK+ VKKFAQEQ+A
Sbjct: 18   NFPSCLSSWKTPPHALNSSQSEAQLKATSNGPPLAPLQTFTDEEMMIKSAVKKFAQEQVA 77

Query: 336  PLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVAL 515
            P VSKMDE+SKMEKSVI+GLFQQGLMGIE + KYGGTGASFFSSVLVIEELAKVDASVAL
Sbjct: 78   PFVSKMDEDSKMEKSVIQGLFQQGLMGIEIDTKYGGTGASFFSSVLVIEELAKVDASVAL 137

Query: 516  VCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGD 695
            VCD+QNT+IN +IG++GTE QKATYL KLATE+  S C+SE  AGSDSF++KTRADK GD
Sbjct: 138  VCDIQNTLINRMIGKYGTEEQKATYLPKLATEKASSICISETGAGSDSFAMKTRADKKGD 197

Query: 696  YYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRA 875
            YY+INGSKMWI+SAE AGLF+VMAN D + GYKGITCFLVD DTEGL VGKPENKLGIRA
Sbjct: 198  YYIINGSKMWISSAEIAGLFVVMANADFSAGYKGITCFLVDGDTEGLHVGKPENKLGIRA 257

Query: 876  SSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLK 1055
            SSTCPVT EN KVP+ NI+GQ+GHGYKYAI SLN+GRIGIAAQMLG+AQGCFD TIPY+K
Sbjct: 258  SSTCPVTFENVKVPKTNILGQVGHGYKYAIGSLNEGRIGIAAQMLGVAQGCFDYTIPYIK 317

Query: 1056 ERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEV 1235
            ER QFG+R+FDFQGLQHQVAH ATQLEAARLLTYNAARLLEAGRP IKEASMAKY+ASE+
Sbjct: 318  ERKQFGRRVFDFQGLQHQVAHMATQLEAARLLTYNAARLLEAGRPMIKEASMAKYHASEL 377

Query: 1236 AIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            A   T+KCIEWMG VGYTK YP+EKYFRDAKIGTIYEGTSNIQLNTIAK +S EY
Sbjct: 378  AGLITSKCIEWMGGVGYTKSYPVEKYFRDAKIGTIYEGTSNIQLNTIAKCISAEY 432


>ref|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Bos taurus].
          Length = 412

 Score =  278 bits (710), Expect = 1e-74
 Identities = 142/375 (37%), Positives = 237/375 (63%), Gaps = 1/375 (0%)
 Frame = +3

Query: 279  DEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASF 458
            +   M++ T + FA++++ P+ +++D+  +   + ++ + + GLM +    +  G G  +
Sbjct: 36   ETHQMLRQTCRDFAEKELFPIAAQVDKEHRFPAAQVKKMGELGLMAMNVPEELSGAGLDY 95

Query: 459  FSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLS 635
             +  + +EE+++  AS  ++  + N++    I +FGT+ QK  ++    + +++G F LS
Sbjct: 96   LAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALS 155

Query: 636  EPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLV 815
            EP  GSD+ +  T A  DGD +V++G+K WIT+A +A   +V A+ D +L  KGI+ FLV
Sbjct: 156  EPGNGSDAGAAATTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNKGISAFLV 215

Query: 816  DRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGI 995
               T GL +GK E+KLGIRASST  +  E+ ++P+ +++G+ G G+K A+Q+L+ GRIGI
Sbjct: 216  PMPTPGLTLGKKEDKLGIRASSTANLIFEDRRIPKDSLLGEPGLGFKIAMQTLDTGRIGI 275

Query: 996  AAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL 1175
            A+Q LG+AQ   D  + Y + R  FG  +   Q +Q ++A  A  LE+ARLLT+ AA L 
Sbjct: 276  ASQALGIAQAALDCAVTYAENRSAFGAPLTKLQAIQFKLADMALALESARLLTWRAAMLK 335

Query: 1176 EAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTS 1355
            +  +PF KEA+MAK  ASE A   T++ ++ +G +GY K+ P E+++RDA+I  IYEGTS
Sbjct: 336  DNKKPFTKEAAMAKLAASEAATAITHQAMQILGGMGYVKEMPAERHYRDARITEIYEGTS 395

Query: 1356 NIQLNTIAKNVSKEY 1400
             IQ   +A ++ K Y
Sbjct: 396  EIQRLVVAGHLLKSY 410


>ref|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
          Length = 426

 Score =  250 bits (638), Expect = 2e-66
 Identities = 145/415 (34%), Positives = 234/415 (56%), Gaps = 6/415 (1%)
 Frame = +3

Query: 174  LSSWKHPPRVLKSSQPAPLKTTNNGLSYSP-LQTFTDEEMMIKNTVKKFAQEQIAPLVSK 350
            ++SW+  P  L+S      + TN+ L     +    +E+  ++ TV KF QE +AP   +
Sbjct: 12   VASWRMRPP-LQSLAGLITQRTNSLLPVDDAVNGLNEEQKQLRQTVAKFLQEHLAPQAQE 70

Query: 351  MDENSKME--KSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALVCD 524
            +D++++ +  +   + L   G++GI    +YGG+G  F  +VLV+EE+++V  +V L   
Sbjct: 71   IDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYG 130

Query: 525  LQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADKDGDYY 701
              + +  + I R G E QK  YL KL + E +G+  +SEP+AGSD  S+K +A+K GD+Y
Sbjct: 131  AHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHY 190

Query: 702  VINGSKMWITSAEDAGLFLVMANVDPAL--GYKGITCFLVDRDTEGLRVGKPENKLGIRA 875
            V+NG+K WIT+  DA + +V A  D       +GIT F+V++   G    K  +KLG+R 
Sbjct: 191  VLNGNKFWITNGPDADVLVVYAKTDVTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRG 250

Query: 876  SSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLK 1055
            S+TC +  E+ +VP ANI+G +G G    +  L+  R+ +A   LG+ Q   D TIPYL 
Sbjct: 251  SNTCELVFEDCEVPAANILGHLGKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLH 310

Query: 1056 ERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEV 1235
             R  FG++I  FQ +Q ++A   T+L A R   YN A+  + G    K+ +    Y++E 
Sbjct: 311  MREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTTKDCAGVILYSAEC 370

Query: 1236 AIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            A Q     I+ +G  GY  D+PM ++ RDAK+  I  GTS ++   I +  + ++
Sbjct: 371  ATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 425


>ref|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Bos taurus].
          Length = 421

 Score =  232 bits (591), Expect = 7e-61
 Identities = 136/374 (36%), Positives = 211/374 (56%), Gaps = 4/374 (1%)
 Frame = +3

Query: 273  FTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGA 452
            FT+++   + T +KFA+E+I PL ++ D+  +    +I+  ++ GLM        GG G 
Sbjct: 41   FTEQQKEFQATARKFAREEIIPLAAEYDKTGEYPVPLIKRAWELGLMNTHIPESCGGLGL 100

Query: 453  SFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLG-SFC 629
              F S L+ EELA     V    +  N++    +   G + Q+  YL ++  E L  ++C
Sbjct: 101  GTFDSCLISEELAYGCTGVQTAIEA-NSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYC 159

Query: 630  LSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDP---ALGYKGI 800
            ++EP AGSD   +KT+A+K GD Y+ING KMWIT+   A  + ++A  DP   A   K  
Sbjct: 160  VTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAF 219

Query: 801  TCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNK 980
            T F+V+ DT G+++G+ E  +G R S T  +  E+ +VP+ N++   G G+K A+ + +K
Sbjct: 220  TGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRVPKENVLIGEGAGFKIAMGAFDK 279

Query: 981  GRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYN 1160
             R  +AA  +GLAQ   D    Y  ER  FGK + + QG+   +A  A ++E ARL    
Sbjct: 280  TRPPVAAAAVGLAQRALDEATKYALERKTFGKLLIEHQGISFLLAEMAMKVELARLSYQR 339

Query: 1161 AARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTI 1340
            AA  +++GR     AS+AK YA ++A Q  +  ++  G  G+  +YP+EK  RDAKI  I
Sbjct: 340  AAWEVDSGRRNTYYASIAKAYAGDIANQLASDAVQIFGGNGFNTEYPVEKLMRDAKIYQI 399

Query: 1341 YEGTSNIQLNTIAK 1382
            YEGT+ IQ   IA+
Sbjct: 400  YEGTAQIQRLIIAR 413


>ref|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mitochondrial [Bos taurus].
          Length = 594

 Score =  214 bits (545), Expect = 2e-55
 Identities = 129/361 (35%), Positives = 210/361 (58%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V+KF  E++     K+D+  K+    +E L   GL G++   +YGG G S  +    + E
Sbjct: 73   VEKFFTEEVDS--RKIDQEGKIPDETLEKLKSLGLFGMQVPEEYGGLGLSN-TMYARLAE 129

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +  +DAS+A+      ++    I   G++ QKA YL +LA+ E + +FCL+EP++GSD+ 
Sbjct: 130  VIGLDASIAVTLAAHQSIGLKGIILAGSKEQKARYLPRLASGEHVAAFCLTEPASGSDAA 189

Query: 663  SLKTRADKDGD--YYVINGSKMWITSAEDAGLFLVMAN---VDPALGYKG-ITCFLVDRD 824
            S++TRA    D  +YV+NGSK+W+T+   A +F V A    VD     K  IT F+V+RD
Sbjct: 190  SIRTRATLSADKSHYVLNGSKVWVTNGGLANVFTVFAKTEVVDSDGSVKDKITAFIVERD 249

Query: 825  TEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQ 1004
              G+  GK E+K+GIR S+TC V  EN +VP  N++G++G G+K A+  LN GR  + + 
Sbjct: 250  FGGVTNGKAEDKMGIRGSNTCEVHFENTRVPVENVLGEVGGGFKVAVNILNSGRFSMGSM 309

Query: 1005 MLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA- 1181
            + G+ +   ++T  Y   R QF + + +F  +Q + +  A +      + Y  A +L+A 
Sbjct: 310  VAGMLKKLIEMTAEYACTRKQFNRNLSEFGLIQEKFSLMAQKAYVMESMAYLTAAMLDAP 369

Query: 1182 GRPFIK-EASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G P    EA+M K ++SE A    ++ ++ +G +GY +DYP E+  RD++I  I+EGT+ 
Sbjct: 370  GFPDCSIEAAMVKVFSSEGAWTCVSEALQILGGLGYMRDYPYERLLRDSRILLIFEGTNE 429

Query: 1359 I 1361
            I
Sbjct: 430  I 430


>ref|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
          Length = 416

 Score =  211 bits (537), Expect = 1e-54
 Identities = 126/381 (33%), Positives = 204/381 (53%), Gaps = 2/381 (0%)
 Frame = +3

Query: 261  PLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYG 440
            P    ++E+   +     FA  ++AP +++ D+        +    Q G  G+  +   G
Sbjct: 38   PSMGLSEEQKEFQKVAFNFAAREMAPHMAEWDQKELFPVDTMRKAAQLGFGGVYVQTDVG 97

Query: 441  GTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQL 617
            G G S   + ++ E LA    S      + N  +  +I RFG+E Q+      L T E+ 
Sbjct: 98   GAGLSRLDTSIIFEALATGCTSTTAYMSIHNMCVW-IIDRFGSEEQRHRLCPPLCTMEKF 156

Query: 618  GSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKG 797
             S+CL+EP +GSD+ SL T A +  D+Y++NGSK +I+   +A +++VM       G +G
Sbjct: 157  ASYCLTEPGSGSDAASLMTSAVRQHDHYILNGSKAFISGGGEADIYVVMCRTGGP-GPRG 215

Query: 798  ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 977
            I+C +V++ T GL  GK E K+G  +  T  V  E+  VP AN +G  G G+  A++ LN
Sbjct: 216  ISCVVVEKGTPGLSFGKKEKKVGWNSQPTQAVIFEDCAVPVANRIGDEGQGFLIAMKGLN 275

Query: 978  KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 1157
             GRI +A+  LG A     L   YLK R QFG+ + + Q LQ Q+A  A +L A+RL+  
Sbjct: 276  GGRINVASCSLGAAHASIVLARDYLKVRKQFGEPLANSQYLQFQLADMAARLVASRLMIR 335

Query: 1158 NAARLLEAGR-PFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIG 1334
             AA  L+  R   I   SMAK +A++      N+ ++  G  GY KDY +++Y RD+++ 
Sbjct: 336  TAATALQEEREDAIVLCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVH 395

Query: 1335 TIYEGTSNIQLNTIAKNVSKE 1397
             I EG++ +    I++++ +E
Sbjct: 396  QILEGSNEVMRMLISRSLLQE 416


>ref|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            precursor [Bos taurus].
          Length = 655

 Score =  209 bits (533), Expect = 4e-54
 Identities = 124/368 (33%), Positives = 207/368 (56%), Gaps = 18/368 (4%)
 Frame = +3

Query: 312  KFAQEQIAPLV---------SKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFS 464
            +F +E + P+          +K D   ++E++ ++GL + G  G++   + GG G     
Sbjct: 100  QFLKELVGPVTRFFEEVNDAAKNDMLERVEETTMQGLKELGAFGLQVPNELGGVGLCNTQ 159

Query: 465  SVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEP 641
               ++E +   D  V +V     ++    I  FGT+AQK  YL KLA+ E + +FCL+EP
Sbjct: 160  YARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEP 219

Query: 642  SAGSDSFSLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGI 800
            S+GSD+ S+++ A     G YY +NGSK+WI++   A +F V A     D A G   + I
Sbjct: 220  SSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPVTDTATGAVKEKI 279

Query: 801  TCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNK 980
            T F+V+R   G+  G PE K+GI+AS+T  V  +  +VP  N++G++G G+K A+  LN 
Sbjct: 280  TAFVVERSFGGVTHGPPEKKMGIKASNTAEVYFDGVRVPAENVLGEVGGGFKVAMHILNN 339

Query: 981  GRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYN 1160
            GR G+AA + G  +G     + +   R QFG++I +F  +Q ++A  A        + Y 
Sbjct: 340  GRFGMAAALAGTMKGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYM 399

Query: 1161 AARLLEAG-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGT 1337
             +  ++ G   F  EA+++K + SE A + T++CI+ MG +G+ K+  +E+  RD +I  
Sbjct: 400  VSANMDQGSTDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFR 459

Query: 1338 IYEGTSNI 1361
            I+EGT++I
Sbjct: 460  IFEGTNDI 467


>ref|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial [Bos
            taurus].
          Length = 430

 Score =  189 bits (479), Expect = 7e-48
 Identities = 108/375 (28%), Positives = 206/375 (54%), Gaps = 3/375 (0%)
 Frame = +3

Query: 273  FTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGA 452
            F+ E  + + +V+KF QE++ P  ++ ++  ++ + + E   +QGL+GI     +GG G 
Sbjct: 53   FSLEHDIFRESVRKFFQEEVIPYHAEWEKAGEVSRELWEKAGKQGLLGISIADHHGGIGG 112

Query: 453  SFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKL-ATEQLGSFC 629
              +SS +V EE A  + +      L + ++   I  +G+E Q   ++ ++ A + +G+  
Sbjct: 113  DLYSSAIVWEEQAYSNCT-GPGFGLHSDIVMPYITNYGSEEQIKRFIPEMVAGKCIGAIA 171

Query: 630  LSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMA--NVDPALGYKGIT 803
            ++EP AGSD   ++T A KDG  +++NGSK+++T+     + +++A  N +      GI+
Sbjct: 172  MTEPGAGSDLQGIRTNAKKDGSDWILNGSKVFVTNGWLCDIVIIVAITNREAHSPAHGIS 231

Query: 804  CFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKG 983
             FLV+   +G   G+  +K+G++A  T     E+ ++P   ++G+   GY Y +Q L + 
Sbjct: 232  LFLVENGMKGFIKGRKLDKIGLKAQDTAEFFFEDVRLPAGALLGEENKGYYYLMQELPQE 291

Query: 984  RIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNA 1163
            R+ I+   +  ++  F+ T  Y+K+R  FGK + D Q ++H++A   T +   R    + 
Sbjct: 292  RLLISEIAVSASEFMFEETRDYVKQRKAFGKTVADLQTVKHKLAELKTSICVTRAFVDSC 351

Query: 1164 ARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIY 1343
             +L    R  +  A+MAKY+AS++  +    C++  G  GY  + P+ K + DA++ TIY
Sbjct: 352  LQLHRVKRLDVATAAMAKYWASDLQNRVAYDCLQLHGGWGYMFECPIAKAYVDARVQTIY 411

Query: 1344 EGTSNIQLNTIAKNV 1388
             GT+ I    IA+ +
Sbjct: 412  GGTNEIMKELIAREI 426


>ref|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
          Length = 438

 Score =  152 bits (383), Expect = 9e-37
 Identities = 102/378 (26%), Positives = 188/378 (49%), Gaps = 3/378 (0%)
 Frame = +3

Query: 267  QTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGT 446
            +  T +E++I++T + + QE++ P +   + N    + +I  + + G++G  T   Y   
Sbjct: 58   EQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLG-PTIQGYSCA 116

Query: 447  GASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGS 623
            G S  +  L+  EL +VD+       +Q++++   I  +G+E QK  YL +LA  E LG 
Sbjct: 117  GVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGC 176

Query: 624  FCLSEPSAGSDSFSLKTRA--DKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKG 797
            F L+EP+ GSD   ++TRA  +     Y+++GSK WIT++  A L +V A  + +     
Sbjct: 177  FGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWARCEDSC---- 232

Query: 798  ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 977
            I  FL+++   GL   + E K  +RASST  + +++ +VPE N++  +  G       LN
Sbjct: 233  IRGFLLEKGMRGLSTPRIEGKFSLRASSTGMIIMDDVEVPEENVLPGVS-GLAGPFGCLN 291

Query: 978  KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 1157
              R GI   +LG A+ C      Y  +R+QFG  +   Q +Q ++A   T++        
Sbjct: 292  NARYGITWGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLGLHACL 351

Query: 1158 NAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGT 1337
               RL +  +   +  S+ K      A+    +  + +G  G + +Y + ++  + +   
Sbjct: 352  QLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHVMNLESVN 411

Query: 1338 IYEGTSNIQLNTIAKNVS 1391
             YEGT +I    + + ++
Sbjct: 412  TYEGTHDIHALILGRAIT 429


>ref|NP_001179221.1| acyl-CoA dehydrogenase family member 10 [Bos taurus].
          Length = 1055

 Score =  125 bits (313), Expect = 1e-28
 Identities = 102/367 (27%), Positives = 176/367 (47%), Gaps = 11/367 (2%)
 Frame = +3

Query: 333  APLVSKMDENSKMEKSVIEGLFQQGLMGIETEP--KYGGTGASFFSSVLVIEELAKVDAS 506
            +PLV  + E +K E     GL+    + +ET+P  KYG    +   + L       + A 
Sbjct: 694  SPLVEDLKEKAKAE-----GLWNL-FLPLETDPEKKYGAGLTNMEYAHLCEVMGTSLYAP 747

Query: 507  VALVCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGS-FCLSEPS-AGSDSFSLKTRA 680
                C   +T   +L+ R+GTE QKA +L  L   +  S F ++EP  A SD+ ++++  
Sbjct: 748  EIFNCSAPDTGNMELLVRYGTEEQKARWLIPLLEGKARSCFAMTEPQVASSDATNIESSI 807

Query: 681  DKDGDYYVINGSKMWITSAED--AGLFLVMANVDP-ALGYKGITCFLVDRDTEGLRVGKP 851
             ++  +YVING K WIT   D    L + M   DP A  ++  +  LV  DT G+++ +P
Sbjct: 808  REEDGFYVINGHKWWITGILDPRCQLCVFMGKTDPHAPRHQQQSILLVPMDTPGIKIIRP 867

Query: 852  ENKLGIRAS--STCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQG 1025
                G+  +      V  E   VP+ NI+   G G++ A   L  GRI    +++G ++ 
Sbjct: 868  LTVYGLEDAPGGHGEVLFEQVCVPKENIILGPGRGFEIAQGRLGPGRIHHCMRLIGCSER 927

Query: 1026 CFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLE--AGRPFIK 1199
               L    +K RV FGK + +   +   +A +  ++E ARLL   AA +++    +    
Sbjct: 928  ALALMKARVKSRVAFGKPLVEQGTVLADIALSRVEIEQARLLVLKAAHVMDVVGNKAAAL 987

Query: 1200 EASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIA 1379
            + +M K  A  +A +  ++ I+  GA G + +YP+ ++F  A+     +G   +    +A
Sbjct: 988  DIAMIKMVAPSMASRVIDRAIQAFGAAGLSSNYPLAQFFAGARALRFADGPDEVHRAAVA 1047

Query: 1380 KNVSKEY 1400
            K   K +
Sbjct: 1048 KMELKHH 1054


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,599,076
Number of extensions: 1420048
Number of successful extensions: 3587
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3553
Number of HSP's successfully gapped: 14
Length of query: 475
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 369
Effective length of database: 14,174,046
Effective search space: 5230222974
Effective search space used: 5230222974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003036
         (1427 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535048.2| PREDICTED: similar to Acyl-CoA dehydrogenase, s...   672   0.0  
Alignment   gi|XP_534712.2| PREDICTED: similar to Acyl-CoA dehydrogenase, s...   285   1e-76
Alignment   gi|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogen...   251   2e-66
Alignment   gi|XP_857956.1| PREDICTED: similar to Isovaleryl-CoA dehydrogen...   244   1e-64
Alignment   gi|XP_547328.2| PREDICTED: similar to Acyl-CoA dehydrogenase, m...   228   1e-59
Alignment   gi|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydroge...   214   2e-55
Alignment   gi|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v...   210   2e-54
Alignment   gi|XP_857195.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v...   210   2e-54
Alignment   gi|XP_546581.2| PREDICTED: similar to Acyl-CoA dehydrogenase, v...   210   2e-54
Alignment   gi|XP_536524.2| PREDICTED: similar to Acyl-CoA dehydrogenase fa...   204   2e-52

>ref|XP_535048.2| PREDICTED: similar to Acyl-CoA dehydrogenase, short/branched chain
            specific, mitochondrial precursor (SBCAD) (2-methyl
            branched chain acyl-CoA dehydrogenase) (2-MEBCAD)
            (2-methylbutyryl-coenzyme A dehydrogenase)
            (2-methylbutyryl-CoA dehydrogenase)... [Canis
            familiaris].
          Length = 521

 Score =  672 bits (1733), Expect = 0.0
 Identities = 342/461 (74%), Positives = 383/461 (83%), Gaps = 1/461 (0%)
 Frame = +3

Query: 21   PRTRGVGAQSRSAYSRPCEIVRGTSPGALMEXXXXXXXXXXXXXXTNFPTCLSSWKHPPR 200
            PRT  + +  RS  +     V     G+++                +FPTCLSSWK PPR
Sbjct: 66   PRTPALPSSGRSFLTVVLRCVAAAGAGSML-----LTTGPPHRLRRSFPTCLSSWKTPPR 120

Query: 201  VLKSSQP-APLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEK 377
            VLKSSQ  A L  TN  L  +PLQ FTDEEMMIKNTVKKFAQE++APLVS MDENSKM+ 
Sbjct: 121  VLKSSQSEAALGLTNAALPGAPLQMFTDEEMMIKNTVKKFAQERVAPLVSTMDENSKMDP 180

Query: 378  SVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIG 557
            S+IEGLFQQGLMGIE E KYGGTGASFFSS+LVIEELAKVDASVALVCD+QNTVIN+L+ 
Sbjct: 181  SIIEGLFQQGLMGIEIETKYGGTGASFFSSILVIEELAKVDASVALVCDIQNTVINNLMR 240

Query: 558  RFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSA 737
            ++GTE QKATYLTKL TE++GS CLSE  AGSD F+LKTRADK G+YYVINGSKMWI++A
Sbjct: 241  KYGTEEQKATYLTKLTTEKVGSICLSEAGAGSDLFALKTRADKKGNYYVINGSKMWISNA 300

Query: 738  EDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVP 917
            E AGLFLVM NV+P LGYKG+TCF+VDRDTEGL +GK E K+GIRASSTC +T EN KVP
Sbjct: 301  EYAGLFLVMVNVNPDLGYKGLTCFVVDRDTEGLHIGKSEKKMGIRASSTCALTFENVKVP 360

Query: 918  EANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQG 1097
            E+NI+GQIGHGYK+AI  LN+GRIGIAAQMLGLAQGCFD T+PY+KER+QFGKRIFDFQG
Sbjct: 361  ESNILGQIGHGYKHAIGILNEGRIGIAAQMLGLAQGCFDYTVPYMKERMQFGKRIFDFQG 420

Query: 1098 LQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGA 1277
            LQHQVAH ATQLEAARLLTYN ARLLE G+P IKEASMAKYYA+EVA  TT+KCIEWMG 
Sbjct: 421  LQHQVAHVATQLEAARLLTYNTARLLETGKPIIKEASMAKYYAAEVAGLTTSKCIEWMGG 480

Query: 1278 VGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            VGYTKDYP+EKYFRDAKIGTIYEGTSNIQLNTIAK V  EY
Sbjct: 481  VGYTKDYPVEKYFRDAKIGTIYEGTSNIQLNTIAKCVDAEY 521


>ref|XP_534712.2| PREDICTED: similar to Acyl-CoA dehydrogenase, short-chain specific,
            mitochondrial precursor (SCAD) (Butyryl-CoA
            dehydrogenase) [Canis familiaris].
          Length = 404

 Score =  285 bits (728), Expect = 1e-76
 Identities = 142/375 (37%), Positives = 241/375 (64%), Gaps = 1/375 (0%)
 Frame = +3

Query: 279  DEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASF 458
            +   M++ T ++FA++++ P+ +++D+  +  K+ ++ + + GL+ ++   ++ G G  +
Sbjct: 28   ETHQMLRQTCREFAEKELVPIAAQVDKEHRFPKAQVKKMGELGLLAMDVPEEFSGAGLDY 87

Query: 459  FSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLS 635
             +  + +EE+++  AS  ++  + N++    I +FG++ QK  ++T   + +++G F LS
Sbjct: 88   LAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKIGCFALS 147

Query: 636  EPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLV 815
            EP  GSD+ +  T A  DGD +++NG+K WIT++ +A   +V A+ D +L  KGI+ FLV
Sbjct: 148  EPGNGSDAGAASTTAQADGDAWILNGTKAWITNSWEASAAVVFASTDRSLQNKGISAFLV 207

Query: 816  DRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGI 995
               T GL +GK E+KLGIRASST  +  E+ ++P+ +++G+ G G+K A+Q+L+ GRIGI
Sbjct: 208  PMPTSGLTLGKKEDKLGIRASSTANLIFEDCRIPKDSLLGEPGMGFKIAMQTLDMGRIGI 267

Query: 996  AAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL 1175
            AAQ LG+AQ   D  + Y + R  FG  +   Q +Q ++A  A  LE+ARLLT+ AA L 
Sbjct: 268  AAQALGIAQAALDCAVNYAENRRAFGAPLTKLQSIQFKLADMALALESARLLTWRAAMLK 327

Query: 1176 EAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTS 1355
            +  +PF KEA+MAK  ASE A   +++ I+ +G +GY  + P E+++RDA+I  IYEGTS
Sbjct: 328  DKKQPFTKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTS 387

Query: 1356 NIQLNTIAKNVSKEY 1400
             IQ   IA ++ K Y
Sbjct: 388  EIQRLVIAGHLLKSY 402


>ref|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
            precursor (IVD) isoform 1 [Canis familiaris].
          Length = 423

 Score =  251 bits (640), Expect = 2e-66
 Identities = 145/419 (34%), Positives = 234/419 (55%), Gaps = 11/419 (2%)
 Frame = +3

Query: 177  SSWKHPPRVLKSSQPAPLKTTNNGLSYSPLQT------FTDEEMMIKNTVKKFAQEQIAP 338
            S+W    R  +    APL +  +  ++S L         + E+  ++ T+ KF QE +AP
Sbjct: 4    SAWLLGRRAARWRLRAPLGSLTSRRAHSLLPVDDAINGLSAEQKQLRQTMAKFLQEHLAP 63

Query: 339  LVSKMDENSKME--KSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVA 512
               ++D  ++ +  +   + L   G++GI    +YGG+G  +   VLV+EE+++V A+V 
Sbjct: 64   QAQEIDHFNEFKNLREFWKQLGNLGVLGITAPAQYGGSGLGYLEQVLVMEEISRVSAAVG 123

Query: 513  LVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADKD 689
            L     + +  + I R G EAQK  YL KL + E +G+  +SEP+AGSD  S+K +A+K 
Sbjct: 124  LSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK 183

Query: 690  GDYYVINGSKMWITSAEDAGLFLVMANVDPAL--GYKGITCFLVDRDTEGLRVGKPENKL 863
            GDYY++NG+K WIT+  DA + ++ A  D A+    +GIT F+V+++  G    K  +KL
Sbjct: 184  GDYYILNGNKFWITNGPDADILIIYAKTDLAVVPASRGITAFIVEKNMPGFSTSKKLDKL 243

Query: 864  GIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTI 1043
            G+R S+TC +  E+ KVP ANI+G +  G    +  L+  R+ ++   LGL Q   D TI
Sbjct: 244  GMRGSNTCELIFEDCKVPAANILGHLSKGVYVLMSGLDLERLVLSGGPLGLMQAVLDHTI 303

Query: 1044 PYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYY 1223
            PYL  R  FG++I  FQ +Q ++A   T+L A R   YN A+  + G    K+ +    Y
Sbjct: 304  PYLHTREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDQGHCTAKDCAGVILY 363

Query: 1224 ASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            ++E A +     I+  GA GY  D+PM ++ RDAK+  I  GTS ++   I +  + ++
Sbjct: 364  SAECATRVALDGIQCFGANGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 422


>ref|XP_857956.1| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
            precursor (IVD) isoform 2 [Canis familiaris].
          Length = 429

 Score =  244 bits (623), Expect = 1e-64
 Identities = 145/425 (34%), Positives = 234/425 (55%), Gaps = 17/425 (4%)
 Frame = +3

Query: 177  SSWKHPPRVLKSSQPAPLKTTNNGLSYSPLQT------FTDEEMMIKNTVKKFAQEQIAP 338
            S+W    R  +    APL +  +  ++S L         + E+  ++ T+ KF QE +AP
Sbjct: 4    SAWLLGRRAARWRLRAPLGSLTSRRAHSLLPVDDAINGLSAEQKQLRQTMAKFLQEHLAP 63

Query: 339  LVSKMDENSKME--KSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVA 512
               ++D  ++ +  +   + L   G++GI    +YGG+G  +   VLV+EE+++V A+V 
Sbjct: 64   QAQEIDHFNEFKNLREFWKQLGNLGVLGITAPAQYGGSGLGYLEQVLVMEEISRVSAAVG 123

Query: 513  LVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADKD 689
            L     + +  + I R G EAQK  YL KL + E +G+  +SEP+AGSD  S+K +A+K 
Sbjct: 124  LSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK 183

Query: 690  ------GDYYVINGSKMWITSAEDAGLFLVMANVDPAL--GYKGITCFLVDRDTEGLRVG 845
                  GDYY++NG+K WIT+  DA + ++ A  D A+    +GIT F+V+++  G    
Sbjct: 184  ANFLSLGDYYILNGNKFWITNGPDADILIIYAKTDLAVVPASRGITAFIVEKNMPGFSTS 243

Query: 846  KPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQG 1025
            K  +KLG+R S+TC +  E+ KVP ANI+G +  G    +  L+  R+ ++   LGL Q 
Sbjct: 244  KKLDKLGMRGSNTCELIFEDCKVPAANILGHLSKGVYVLMSGLDLERLVLSGGPLGLMQA 303

Query: 1026 CFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEA 1205
              D TIPYL  R  FG++I  FQ +Q ++A   T+L A R   YN A+  + G    K+ 
Sbjct: 304  VLDHTIPYLHTREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDQGHCTAKDC 363

Query: 1206 SMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKN 1385
            +    Y++E A +     I+  GA GY  D+PM ++ RDAK+  I  GTS ++   I + 
Sbjct: 364  AGVILYSAECATRVALDGIQCFGANGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRA 423

Query: 1386 VSKEY 1400
             + ++
Sbjct: 424  FNADF 428


>ref|XP_547328.2| PREDICTED: similar to Acyl-CoA dehydrogenase, medium-chain specific,
            mitochondrial precursor (MCAD) [Canis familiaris].
          Length = 444

 Score =  228 bits (581), Expect = 1e-59
 Identities = 138/397 (34%), Positives = 216/397 (54%), Gaps = 4/397 (1%)
 Frame = +3

Query: 204  LKSSQPAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSV 383
            L+ ++PA       G ++     FT+++   + T +KFA+E+I P+ ++ D+  +    +
Sbjct: 45   LQHTKPALKHEPRLGFNFE----FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPL 100

Query: 384  IEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRF 563
            I+  ++ GLM        GG G   F + L+ EELA     V    +  +     LI   
Sbjct: 101  IKRAWELGLMNTHIPESCGGLGLGTFDACLITEELAYGCTGVQTAIEANSLGQMPLIIA- 159

Query: 564  GTEAQKATYLTKLATEQLG-SFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAE 740
            G + Q+  YL +L  E L  ++C++EP AGSD   +KT+A+K GD Y+ING KMWIT+  
Sbjct: 160  GNDQQQKKYLGRLTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 219

Query: 741  DAGLFLVMANVDP---ALGYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAK 911
             A  + ++A  DP       K  T F+V+ DT G+++G+ E  +G R S T  +  E+ K
Sbjct: 220  KANWYFLLARSDPDPKTPAGKAFTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVK 279

Query: 912  VPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDF 1091
            VP+ N++   G G+K A+ + +K R  +AA  +GL Q   D    Y  ER  FGK + + 
Sbjct: 280  VPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLGQRALDEATKYALERKTFGKLLVEH 339

Query: 1092 QGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWM 1271
            QG+   +A  A ++E AR+    AA  ++ GR     AS+AK YA+++A Q     ++  
Sbjct: 340  QGISFLLAEMAMKVELARMSYQRAAWEVDTGRRNTYFASIAKAYAADIANQLATDAVQVF 399

Query: 1272 GAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAK 1382
            G  G+  +YP+EK  RDAKI  IYEGT+ IQ   IA+
Sbjct: 400  GGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAR 436


>ref|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member 9
            isoform 1 [Canis familiaris].
          Length = 621

 Score =  214 bits (544), Expect = 2e-55
 Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            ++KF  E++     ++D   K+    +E L   GL G++   +YGG G S  +    + E
Sbjct: 74   LEKFFTEEVDS--ERIDREGKIPNETLEKLKNLGLFGMQVPEEYGGLGLSN-TMYARLGE 130

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +  +D S+A+       +    I   G + QKA YL +LA+ E + +FCL+EP++GSD+ 
Sbjct: 131  IIGLDGSIAVTLAAHQAIGLKGIILAGNKEQKAKYLPRLASGEHIAAFCLTEPTSGSDAA 190

Query: 663  SLKTRA--DKDGDYYVINGSKMWITSAEDAGLFLVMAN---VDPALGYKG-ITCFLVDRD 824
            S+KTRA   +D  +Y++NGSK+WIT+   A +F V A    VD     K  IT  +V+RD
Sbjct: 191  SIKTRATLSEDKKHYILNGSKIWITNGGIANVFTVFAKTQVVDSDGSVKDKITALIVERD 250

Query: 825  TEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQ 1004
              G+  GKPE+KLGIR S+TC V  EN KVP  N++G++G G+K A+  LN GR  + + 
Sbjct: 251  FGGVTNGKPEDKLGIRGSNTCEVHFENTKVPIENVLGEVGGGFKVAMNILNSGRFSMGSL 310

Query: 1005 MLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL-EA 1181
            + G+ +   ++T  Y   R QF K + +F  +Q + A  A +      + Y  A +L + 
Sbjct: 311  VAGMLKKLIEMTAAYACTRKQFNKNLSEFGLIQEKFALMAQKTYVMESMAYLTAGMLDQP 370

Query: 1182 GRPFIK-EASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G P    EA+M K ++SE A Q  ++ ++ +G  GY +DYP E+  RD++I  I+EGT+ 
Sbjct: 371  GFPDCSIEAAMVKVFSSEGAWQCVSEALQVLGGSGYMRDYPYERLLRDSRILLIFEGTNE 430

Query: 1359 I 1361
            I
Sbjct: 431  I 431


>ref|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
            specific, mitochondrial precursor (VLCAD) isoform 7
            [Canis familiaris].
          Length = 522

 Score =  210 bits (535), Expect = 2e-54
 Identities = 124/361 (34%), Positives = 206/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D   K+E++ ++GL + G  G++   + GG G        ++E 
Sbjct: 104  VSRFFEEVNDP--AKNDTLEKVEETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEI 161

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +   D  V +      ++    I  FGT+AQK  YL KLA+ E + +FCL+EPS+GSD+ 
Sbjct: 162  VGTHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAA 221

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S+++ A     G YY +NGSK+WI++   A +F V A     D A G   + IT F+V+R
Sbjct: 222  SIRSSAVPSPCGKYYTLNGSKIWISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVER 281

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  ++ +VP  N++G++G G+K A+  LN GR G+AA
Sbjct: 282  SFGGVTHGPPEKKMGIKASNTAEVYFDSVRVPAENVLGEVGSGFKVAMHILNNGRFGMAA 341

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             + G  +G     + +   R QFG++I +F  +Q ++A  A        + Y  +  ++ 
Sbjct: 342  ALAGTMRGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQ 401

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G   F  EA+++K + SE A + T++CI+ +G +G+ K+  +E+  RD +I  I+EGT++
Sbjct: 402  GSTDFQIEAAISKIFGSEAAWKVTDECIQILGGMGFMKEPGVERVLRDLRIFRIFEGTND 461

Query: 1359 I 1361
            I
Sbjct: 462  I 462


>ref|XP_857195.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
            specific, mitochondrial precursor (VLCAD) isoform 6
            [Canis familiaris].
          Length = 487

 Score =  210 bits (535), Expect = 2e-54
 Identities = 124/361 (34%), Positives = 206/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D   K+E++ ++GL + G  G++   + GG G        ++E 
Sbjct: 104  VSRFFEEVNDP--AKNDTLEKVEETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEI 161

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +   D  V +      ++    I  FGT+AQK  YL KLA+ E + +FCL+EPS+GSD+ 
Sbjct: 162  VGTHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAA 221

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S+++ A     G YY +NGSK+WI++   A +F V A     D A G   + IT F+V+R
Sbjct: 222  SIRSSAVPSPCGKYYTLNGSKIWISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVER 281

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  ++ +VP  N++G++G G+K A+  LN GR G+AA
Sbjct: 282  SFGGVTHGPPEKKMGIKASNTAEVYFDSVRVPAENVLGEVGSGFKVAMHILNNGRFGMAA 341

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             + G  +G     + +   R QFG++I +F  +Q ++A  A        + Y  +  ++ 
Sbjct: 342  ALAGTMRGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQ 401

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G   F  EA+++K + SE A + T++CI+ +G +G+ K+  +E+  RD +I  I+EGT++
Sbjct: 402  GSTDFQIEAAISKIFGSEAAWKVTDECIQILGGMGFMKEPGVERVLRDLRIFRIFEGTND 461

Query: 1359 I 1361
            I
Sbjct: 462  I 462


>ref|XP_546581.2| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
            specific, mitochondrial precursor (VLCAD) isoform 1
            [Canis familiaris].
          Length = 650

 Score =  210 bits (535), Expect = 2e-54
 Identities = 124/361 (34%), Positives = 206/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D   K+E++ ++GL + G  G++   + GG G        ++E 
Sbjct: 104  VSRFFEEVNDP--AKNDTLEKVEETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEI 161

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +   D  V +      ++    I  FGT+AQK  YL KLA+ E + +FCL+EPS+GSD+ 
Sbjct: 162  VGTHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAA 221

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S+++ A     G YY +NGSK+WI++   A +F V A     D A G   + IT F+V+R
Sbjct: 222  SIRSSAVPSPCGKYYTLNGSKIWISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVER 281

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  ++ +VP  N++G++G G+K A+  LN GR G+AA
Sbjct: 282  SFGGVTHGPPEKKMGIKASNTAEVYFDSVRVPAENVLGEVGSGFKVAMHILNNGRFGMAA 341

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             + G  +G     + +   R QFG++I +F  +Q ++A  A        + Y  +  ++ 
Sbjct: 342  ALAGTMRGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQ 401

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G   F  EA+++K + SE A + T++CI+ +G +G+ K+  +E+  RD +I  I+EGT++
Sbjct: 402  GSTDFQIEAAISKIFGSEAAWKVTDECIQILGGMGFMKEPGVERVLRDLRIFRIFEGTND 461

Query: 1359 I 1361
            I
Sbjct: 462  I 462


>ref|XP_536524.2| PREDICTED: similar to Acyl-CoA dehydrogenase family member 8,
            mitochondrial precursor (ACAD-8) (Isobutyryl-CoA
            dehydrogenase) (Activator-recruited cofactor 42 kDa
            component) (ARC42) [Canis familiaris].
          Length = 473

 Score =  204 bits (518), Expect = 2e-52
 Identities = 124/371 (33%), Positives = 201/371 (54%), Gaps = 10/371 (2%)
 Frame = +3

Query: 315  FAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAK 494
            FA  ++AP +++ D+        +    Q G  G+      GG+G S   + ++ E LA 
Sbjct: 105  FAAREMAPNMAEWDQKELFPVDAMRKAAQLGFGGVYVRTDVGGSGLSRLDTSVIFEALAT 164

Query: 495  VDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLK 671
               S      + N  +  +I  FG E Q+  +   L T E+  S+CL+EP +GSD+ SL 
Sbjct: 165  GCTSTTAYISIHNMCVW-MIDTFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLL 223

Query: 672  TRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKP 851
            T A + GD+Y++NGSK +I+   ++ +++VM       G KGI+C +V++ T GL  GK 
Sbjct: 224  TSAKRQGDHYILNGSKAFISGGGESDIYVVMCRTGGP-GPKGISCVVVEKGTPGLSFGKK 282

Query: 852  ENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCF 1031
            E K+G  +  T  V  E+  VP AN +G  G G+  A++ LN GRI +A+  LG A    
Sbjct: 283  EKKVGWNSQPTRAVIFEDCAVPVANRIGNEGQGFIIAMKGLNGGRINVASCSLGAAHASV 342

Query: 1032 DLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGR-PFIKEAS 1208
             LT  YL  R QFG+ + + Q LQ ++A  AT+L A+RL+  NAA  L+  R   +   S
Sbjct: 343  VLTRDYLSVRKQFGEPLANNQYLQFKLADMATRLVASRLIIRNAAVALQEEREDAVALCS 402

Query: 1209 MAKYYASEVAI--------QTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQ 1364
            MAK +A++           +  N+ ++  G  GY KDY +++Y RD+++  I EG++ + 
Sbjct: 403  MAKLFATDECFAMRHYLWKKICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVM 462

Query: 1365 LNTIAKNVSKE 1397
               I++++ +E
Sbjct: 463  RMLISRSLFEE 473


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,036,257
Number of extensions: 1464105
Number of successful extensions: 3858
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3807
Number of HSP's successfully gapped: 21
Length of query: 475
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 368
Effective length of database: 15,307,552
Effective search space: 5633179136
Effective search space used: 5633179136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003036
         (1427 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001600.1| short/branched chain specific acyl-CoA dehydrog...   692   0.0  
Alignment   gi|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mi...   275   6e-74
Alignment   gi|NP_002216.2| isovaleryl-CoA dehydrogenase, mitochondrial iso...   244   1e-64
Alignment   gi|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase...   231   2e-60
Alignment   gi|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, m...   231   2e-60
Alignment   gi|NP_054768.2| acyl-CoA dehydrogenase family member 9, mitocho...   230   2e-60
Alignment   gi|NP_001152980.1| isovaleryl-CoA dehydrogenase, mitochondrial ...   224   2e-58
Alignment   gi|NP_055199.1| isobutyryl-CoA dehydrogenase, mitochondrial pre...   216   3e-56
Alignment   gi|NP_000009.1| very long-chain specific acyl-CoA dehydrogenase...   213   4e-55
Alignment   gi|NP_001029031.1| very long-chain specific acyl-CoA dehydrogen...   210   2e-54

>ref|NP_001600.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
            precursor [Homo sapiens].
          Length = 432

 Score =  692 bits (1787), Expect = 0.0
 Identities = 342/415 (82%), Positives = 378/415 (91%), Gaps = 1/415 (0%)
 Frame = +3

Query: 159  NFPTCLSSWKHPPRVLKSSQP-APLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIA 335
            NF TCLSSWK PP V KSSQ  A L  TNNG+ ++PLQTFTDEEMMIK++VKKFAQEQIA
Sbjct: 18   NFLTCLSSWKIPPHVSKSSQSEALLNITNNGIHFAPLQTFTDEEMMIKSSVKKFAQEQIA 77

Query: 336  PLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVAL 515
            PLVS MDENSKMEKSVI+GLFQQGLMGIE +P+YGGTGASF S+VLVIEELAKVDASVA+
Sbjct: 78   PLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV 137

Query: 516  VCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGD 695
             C++QNT+IN LI + GTE QKATYL +L TE++GSFCLSE  AGSDSF+LKTRADK+GD
Sbjct: 138  FCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGD 197

Query: 696  YYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRA 875
            YYV+NGSKMWI+SAE AGLFLVMANVDP +GYKGIT FLVDRDT GL +GKPENKLG+RA
Sbjct: 198  YYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRA 257

Query: 876  SSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLK 1055
            SSTCP+T EN KVPEANI+GQIGHGYKYAI SLN+GRIGIAAQMLGLAQGCFD TIPY+K
Sbjct: 258  SSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIK 317

Query: 1056 ERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEV 1235
            ER+QFGKR+FDFQGLQHQVAH ATQLEAARLLTYNAARLLEAG+PFIKEASMAKYYASE+
Sbjct: 318  ERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEI 377

Query: 1236 AIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            A QTT+KCIEWMG VGYTKDYP+EKYFRDAKIGTIYEG SNIQLNTIAK++  EY
Sbjct: 378  AGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432


>ref|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Homo sapiens].
          Length = 412

 Score =  275 bits (704), Expect = 6e-74
 Identities = 143/375 (38%), Positives = 237/375 (63%), Gaps = 1/375 (0%)
 Frame = +3

Query: 279  DEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASF 458
            +   M+  T + FA++++ P+ +++D+      + ++ +   GL+ ++   + GG G  +
Sbjct: 36   ETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDY 95

Query: 459  FSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLS 635
             +  + +EE+++  AS  ++  + N++    I +FG++ QK  ++T   + +++G F LS
Sbjct: 96   LAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALS 155

Query: 636  EPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLV 815
            EP  GSD+ +  T A  +GD +V+NG+K WIT+A +A   +V A+ D AL  KGI+ FLV
Sbjct: 156  EPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLV 215

Query: 816  DRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGI 995
               T GL +GK E+KLGIR SST  +  E+ ++P+ +I+G+ G G+K A+Q+L+ GRIGI
Sbjct: 216  PMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGI 275

Query: 996  AAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL 1175
            A+Q LG+AQ   D  + Y + R+ FG  +   Q +Q ++A  A  LE+ARLLT+ AA L 
Sbjct: 276  ASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLK 335

Query: 1176 EAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTS 1355
            +  +PFIKEA+MAK  ASE A   +++ I+ +G +GY  + P E+++RDA+I  IYEGTS
Sbjct: 336  DNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTS 395

Query: 1356 NIQLNTIAKNVSKEY 1400
             IQ   IA ++ + Y
Sbjct: 396  EIQRLVIAGHLLRSY 410


>ref|NP_002216.2| isovaleryl-CoA dehydrogenase, mitochondrial isoform 1 precursor [Homo
            sapiens].
          Length = 426

 Score =  244 bits (623), Expect = 1e-64
 Identities = 149/420 (35%), Positives = 232/420 (55%), Gaps = 11/420 (2%)
 Frame = +3

Query: 174  LSSWK-HPPRVLKSSQPA----PLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIAP 338
            ++SW+  PP     SQ A    P+    NGLS        +E+  ++ T+ KF QE +AP
Sbjct: 15   VASWRLRPPLAGFVSQRAHSLLPVDDAINGLS--------EEQRQLRQTMAKFLQEHLAP 66

Query: 339  LVSKMDENSKME--KSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVA 512
               ++D +++ +  +   + L   G++GI    +YGG+G  +   VLV+EE+++   +V 
Sbjct: 67   KAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVG 126

Query: 513  LVCDLQ-NTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADK 686
            L      N  IN L+ R G EAQK  YL KL + E +G+  +SEP+AGSD  S+K +A+K
Sbjct: 127  LSYGAHSNLCINQLV-RNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEK 185

Query: 687  DGDYYVINGSKMWITSAEDAGLFLVMANVDPAL--GYKGITCFLVDRDTEGLRVGKPENK 860
             G++Y++NG+K WIT+  DA + +V A  D A     +GIT F+V++   G    K  +K
Sbjct: 186  KGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDK 245

Query: 861  LGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLT 1040
            LG+R S+TC +  E+ K+P ANI+G    G    +  L+  R+ +A   LGL Q   D T
Sbjct: 246  LGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHT 305

Query: 1041 IPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKY 1220
            IPYL  R  FG++I  FQ +Q ++A   T+L A R   YN A+  + G    K+ +    
Sbjct: 306  IPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVIL 365

Query: 1221 YASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            Y++E A Q     I+  G  GY  D+PM ++ RDAK+  I  GTS ++   I +  + ++
Sbjct: 366  YSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 425


>ref|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform b
            precursor [Homo sapiens].
          Length = 425

 Score =  231 bits (588), Expect = 2e-60
 Identities = 135/385 (35%), Positives = 212/385 (55%), Gaps = 9/385 (2%)
 Frame = +3

Query: 273  FTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGA 452
            FT+++   + T +KFA+E+I P+ ++ D+  +    +I   ++ GLM        GG G 
Sbjct: 45   FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 104

Query: 453  SFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRF-----GTEAQKATYLTKLATEQL 617
              F + L+ EELA     V      Q  +  + +G+      G + QK  YL ++  E L
Sbjct: 105  GTFDACLISEELAYGCTGV------QTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPL 158

Query: 618  G-SFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDP---AL 785
              ++C++EP AGSD   +KT+A+K GD Y+ING KMWIT+   A  + ++A  DP   A 
Sbjct: 159  MCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAP 218

Query: 786  GYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAI 965
              K  T F+V+ DT G+++G+ E  +G R S T  +  E+ KVP+ N++   G G+K A+
Sbjct: 219  ANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM 278

Query: 966  QSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAAR 1145
             + +K R  +AA  +GLAQ   D    Y  ER  FGK + + Q +   +A  A ++E AR
Sbjct: 279  GAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELAR 338

Query: 1146 LLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDA 1325
            +    AA  +++GR     AS+AK +A ++A Q     ++ +G  G+  +YP+EK  RDA
Sbjct: 339  MSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDA 398

Query: 1326 KIGTIYEGTSNIQLNTIAKNVSKEY 1400
            KI  IYEGTS IQ   +A+    +Y
Sbjct: 399  KIYQIYEGTSQIQRLIVAREHIDKY 423


>ref|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform a
            precursor [Homo sapiens].
          Length = 421

 Score =  231 bits (588), Expect = 2e-60
 Identities = 135/385 (35%), Positives = 212/385 (55%), Gaps = 9/385 (2%)
 Frame = +3

Query: 273  FTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGA 452
            FT+++   + T +KFA+E+I P+ ++ D+  +    +I   ++ GLM        GG G 
Sbjct: 41   FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 100

Query: 453  SFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRF-----GTEAQKATYLTKLATEQL 617
              F + L+ EELA     V      Q  +  + +G+      G + QK  YL ++  E L
Sbjct: 101  GTFDACLISEELAYGCTGV------QTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPL 154

Query: 618  G-SFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDP---AL 785
              ++C++EP AGSD   +KT+A+K GD Y+ING KMWIT+   A  + ++A  DP   A 
Sbjct: 155  MCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAP 214

Query: 786  GYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAI 965
              K  T F+V+ DT G+++G+ E  +G R S T  +  E+ KVP+ N++   G G+K A+
Sbjct: 215  ANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM 274

Query: 966  QSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAAR 1145
             + +K R  +AA  +GLAQ   D    Y  ER  FGK + + Q +   +A  A ++E AR
Sbjct: 275  GAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELAR 334

Query: 1146 LLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDA 1325
            +    AA  +++GR     AS+AK +A ++A Q     ++ +G  G+  +YP+EK  RDA
Sbjct: 335  MSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDA 394

Query: 1326 KIGTIYEGTSNIQLNTIAKNVSKEY 1400
            KI  IYEGTS IQ   +A+    +Y
Sbjct: 395  KIYQIYEGTSQIQRLIVAREHIDKY 419


>ref|NP_054768.2| acyl-CoA dehydrogenase family member 9, mitochondrial precursor [Homo
            sapiens].
          Length = 621

 Score =  230 bits (587), Expect = 2e-60
 Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 11/363 (3%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLV--I 479
            V+KF  E++     K+D+  K+    +E L   GL G++   +YGG G   FS+ +   +
Sbjct: 74   VEKFFTEEVDS--RKIDQEGKIPDETLEKLKSLGLFGLQVPEEYGGLG---FSNTMYSRL 128

Query: 480  EELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSD 656
             E+  +D S+ +       +    I   GTE QKA YL KLA+ E + +FCL+EP++GSD
Sbjct: 129  GEIISMDGSITVTLAAHQAIGLKGIILAGTEEQKAKYLPKLASGEHIAAFCLTEPASGSD 188

Query: 657  SFSLKTRA--DKDGDYYVINGSKMWITSAEDAGLFLVMAN---VDPALGYKG-ITCFLVD 818
            + S+++RA   +D  +Y++NGSK+WIT+   A +F V A    VD     K  IT F+V+
Sbjct: 189  AASIRSRATLSEDKKHYILNGSKVWITNGGLANIFTVFAKTEVVDSDGSVKDKITAFIVE 248

Query: 819  RDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIA 998
            RD  G+  GKPE+KLGIR S+TC V  EN K+P  NI+G++G G+K A+  LN GR  + 
Sbjct: 249  RDFGGVTNGKPEDKLGIRGSNTCEVHFENTKIPVENILGEVGDGFKVAMNILNSGRFSMG 308

Query: 999  AQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL- 1175
            + + GL +   ++T  Y   R QF KR+ +F  +Q + A  A +      +TY  A +L 
Sbjct: 309  SVVAGLLKRLIEMTAEYACTRKQFNKRLSEFGLIQEKFALMAQKAYVMESMTYLTAGMLD 368

Query: 1176 EAGRPFIK-EASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGT 1352
            + G P    EA+M K ++SE A Q  ++ ++ +G +GYT+DYP E+  RD +I  I+EGT
Sbjct: 369  QPGFPDCSIEAAMVKVFSSEAAWQCVSEALQILGGLGYTRDYPYERILRDTRILLIFEGT 428

Query: 1353 SNI 1361
            + I
Sbjct: 429  NEI 431


>ref|NP_001152980.1| isovaleryl-CoA dehydrogenase, mitochondrial isoform 2 precursor [Homo
            sapiens].
          Length = 396

 Score =  224 bits (570), Expect = 2e-58
 Identities = 127/336 (37%), Positives = 192/336 (57%), Gaps = 4/336 (1%)
 Frame = +3

Query: 405  GLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALVCDLQ-NTVINDLIGRFGTEAQK 581
            G++GI    +YGG+G  +   VLV+EE+++   +V L      N  IN L+ R G EAQK
Sbjct: 61   GVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLV-RNGNEAQK 119

Query: 582  ATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFL 758
              YL KL + E +G+  +SEP+AGSD  S+K +A+K G++Y++NG+K WIT+  DA + +
Sbjct: 120  EKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLI 179

Query: 759  VMANVDPAL--GYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIV 932
            V A  D A     +GIT F+V++   G    K  +KLG+R S+TC +  E+ K+P ANI+
Sbjct: 180  VYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANIL 239

Query: 933  GQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQV 1112
            G    G    +  L+  R+ +A   LGL Q   D TIPYL  R  FG++I  FQ +Q ++
Sbjct: 240  GHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKM 299

Query: 1113 AHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTK 1292
            A   T+L A R   YN A+  + G    K+ +    Y++E A Q     I+  G  GY  
Sbjct: 300  ADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYIN 359

Query: 1293 DYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            D+PM ++ RDAK+  I  GTS ++   I +  + ++
Sbjct: 360  DFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 395


>ref|NP_055199.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Homo sapiens].
          Length = 415

 Score =  216 bits (551), Expect = 3e-56
 Identities = 130/381 (34%), Positives = 206/381 (54%), Gaps = 2/381 (0%)
 Frame = +3

Query: 261  PLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYG 440
            P     +E+   +     FA  ++AP +++ D+       V+    Q G  G+  +   G
Sbjct: 37   PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVG 96

Query: 441  GTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQL 617
            G+G S   + ++ E LA    S      + N +   +I  FG E Q+  +   L T E+ 
Sbjct: 97   GSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKF 155

Query: 618  GSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKG 797
             S+CL+EP +GSD+ SL T A K GD+Y++NGSK +I+ A ++ +++VM       G KG
Sbjct: 156  ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGP-GPKG 214

Query: 798  ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 977
            I+C +V++ T GL  GK E K+G  +  T  V  E+  VP AN +G  G G+  A++ LN
Sbjct: 215  ISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLN 274

Query: 978  KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 1157
             GRI IA+  LG A     LT  +L  R QFG+ +   Q LQ  +A  AT+L AARL+  
Sbjct: 275  GGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVR 334

Query: 1158 NAA-RLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIG 1334
            NAA  L E  +  +   SMAK +A++      N+ ++  G  GY KDY +++Y RD+++ 
Sbjct: 335  NAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVH 394

Query: 1335 TIYEGTSNIQLNTIAKNVSKE 1397
             I EG++ +    I++++ +E
Sbjct: 395  QILEGSNEVMRILISRSLLQE 415


>ref|NP_000009.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            isoform 1 precursor [Homo sapiens].
          Length = 655

 Score =  213 bits (542), Expect = 4e-55
 Identities = 132/413 (31%), Positives = 220/413 (53%), Gaps = 22/413 (5%)
 Frame = +3

Query: 189  HPPRVLKSSQPAPLKTTNNGLSYSPLQTFTDEEM----MIKNTVKKFAQEQIAPLV---- 344
            HP   L   +PA  ++ +  +     Q  TD+      ++     +F +E + P+     
Sbjct: 55   HPSDALTRKKPAKAESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFE 114

Query: 345  -----SKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASV 509
                 +K D    +E++  +GL + G  G++   + GG G        ++E +   D  V
Sbjct: 115  EVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGV 174

Query: 510  ALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADK 686
             +      ++    I  FGT+AQK  YL KLA+ E + +FCL+EPS+GSD+ S++T A  
Sbjct: 175  GITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVP 234

Query: 687  D--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDRDTEGLRVG 845
               G YY +NGSK+WI++   A +F V A     DPA G   + IT F+V+R   G+  G
Sbjct: 235  SPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHG 294

Query: 846  KPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQG 1025
             PE K+GI+AS+T  V  +  +VP  N++G++G G+K A+  LN GR G+AA + G  +G
Sbjct: 295  PPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRG 354

Query: 1026 CFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAG-RPFIKE 1202
                 + +   R QFG++I +F  +Q ++A           + Y  +  ++ G   F  E
Sbjct: 355  IIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIE 414

Query: 1203 ASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNI 1361
            A+++K + SE A + T++CI+ MG +G+ K+  +E+  RD +I  I+EGT++I
Sbjct: 415  AAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDI 467


>ref|NP_001029031.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            isoform 2 precursor [Homo sapiens].
          Length = 633

 Score =  210 bits (535), Expect = 2e-54
 Identities = 125/361 (34%), Positives = 203/361 (56%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D    +E++  +GL + G  G++   + GG G        ++E 
Sbjct: 87   VSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEI 144

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +   D  V +      ++    I  FGT+AQK  YL KLA+ E + +FCL+EPS+GSD+ 
Sbjct: 145  VGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAA 204

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S++T A     G YY +NGSK+WI++   A +F V A     DPA G   + IT F+V+R
Sbjct: 205  SIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVER 264

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  +  +VP  N++G++G G+K A+  LN GR G+AA
Sbjct: 265  GFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAA 324

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             + G  +G     + +   R QFG++I +F  +Q ++A           + Y  +  ++ 
Sbjct: 325  ALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQ 384

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G   F  EA+++K + SE A + T++CI+ MG +G+ K+  +E+  RD +I  I+EGT++
Sbjct: 385  GATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTND 444

Query: 1359 I 1361
            I
Sbjct: 445  I 445


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,059,039
Number of extensions: 1451981
Number of successful extensions: 3609
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3566
Number of HSP's successfully gapped: 16
Length of query: 475
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 369
Effective length of database: 14,802,980
Effective search space: 5462299620
Effective search space used: 5462299620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003036
         (1427 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080102.1| short/branched chain specific acyl-CoA dehydrog...   664   0.0  
Alignment   gi|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mi...   275   6e-74
Alignment   gi|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial pre...   249   4e-66
Alignment   gi|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, m...   225   8e-59
Alignment   gi|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitocho...   220   2e-57
Alignment   gi|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial pre...   213   2e-55
Alignment   gi|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase...   200   3e-51
Alignment   gi|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mit...   192   5e-49
Alignment   gi|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial pr...   145   6e-35
Alignment   gi|NP_032123.2| glutaryl-CoA dehydrogenase, mitochondrial precu...   145   6e-35

>ref|NP_080102.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
            [Mus musculus].
          Length = 432

 Score =  664 bits (1712), Expect = 0.0
 Identities = 328/414 (79%), Positives = 367/414 (88%), Gaps = 1/414 (0%)
 Frame = +3

Query: 162  FPTCLSSWKHPPRVLKSSQPAPLKT-TNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIAP 338
            FPTCLS WK PPRVLKSSQP  L + TNN ++++PLQT TDEE+M+K TVKKFAQE +AP
Sbjct: 19   FPTCLSPWKIPPRVLKSSQPEALVSLTNNAVAFAPLQTLTDEEIMMKQTVKKFAQEHVAP 78

Query: 339  LVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALV 518
            LVS MDENSKMEKSVI+GLFQQGLMGIE E +YGGT ASFF SVLVIEELAKVDASVAL+
Sbjct: 79   LVSSMDENSKMEKSVIQGLFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALL 138

Query: 519  CDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGDY 698
            CD+QNT+IN+L  +  +E QKATYL KL TE+LGSFCLSE  AGSDSF++KTRADK G+Y
Sbjct: 139  CDIQNTIINNLFRKHASEEQKATYLPKLVTEKLGSFCLSEAGAGSDSFAMKTRADKSGNY 198

Query: 699  YVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRAS 878
            YV+NGSKMWI+ AE A LFLV ANVDP+ GY+GITCFLVDRDTEG ++GK ENK+GIRAS
Sbjct: 199  YVLNGSKMWISHAEHAELFLVFANVDPSSGYRGITCFLVDRDTEGFQIGKRENKMGIRAS 258

Query: 879  STCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKE 1058
            STC +T EN KVPE NI+G+IGHGYKYAI SLN+GRIGIAAQMLGLAQGCFD TIPY+KE
Sbjct: 259  STCQLTFENVKVPETNILGKIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKE 318

Query: 1059 RVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVA 1238
            R+QFGKRIFDFQGLQHQVA  ATQLEA RLLTYNAARL+EAGRPFIKEASMAKYYASEVA
Sbjct: 319  RMQFGKRIFDFQGLQHQVAQVATQLEATRLLTYNAARLVEAGRPFIKEASMAKYYASEVA 378

Query: 1239 IQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
              TT+KCIEWMG VGYTKDYP+EK+FRDAKIGTIYEG SNIQLNTIAK++  EY
Sbjct: 379  GLTTSKCIEWMGGVGYTKDYPVEKFFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432


>ref|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Mus musculus].
          Length = 412

 Score =  275 bits (703), Expect = 6e-74
 Identities = 139/375 (37%), Positives = 234/375 (62%), Gaps = 1/375 (0%)
 Frame = +3

Query: 279  DEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASF 458
            +   M++ T + FA++++ P+ +++D       + ++ + + GL+ ++   +  G G  +
Sbjct: 36   ETHQMLRQTCRDFAEKELVPIAAQLDREHLFPTAQVKKMGELGLLAMDVPEELSGAGLDY 95

Query: 459  FSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLS 635
             +  + +EE+++  AS  ++  + N++    I +FG+  QK  ++T     +++G F LS
Sbjct: 96   LAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALS 155

Query: 636  EPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLV 815
            EP  GSD+ +  T A ++GD +V+NG+K WIT++ +A   +V A+ D +   KGI+ FLV
Sbjct: 156  EPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLV 215

Query: 816  DRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGI 995
               T GL +GK E+KLGIRASST  +  E+ ++P+ N++G+ G G+K A+Q+L+ GRIGI
Sbjct: 216  PMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGI 275

Query: 996  AAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL 1175
            A+Q LG+AQ   D  + Y + R  FG  +   Q +Q ++A  A  LE+ARLLT+ AA L 
Sbjct: 276  ASQALGIAQASLDCAVKYAENRNAFGAPLTKLQNIQFKLADMALALESARLLTWRAAMLK 335

Query: 1176 EAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTS 1355
            +  +PF KE++MAK  ASE A   +++ I+ +G +GY  + P E+Y+RDA+I  IYEGTS
Sbjct: 336  DNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYEGTS 395

Query: 1356 NIQLNTIAKNVSKEY 1400
             IQ   IA ++ + Y
Sbjct: 396  EIQRLVIAGHLLRSY 410


>ref|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 424

 Score =  249 bits (636), Expect = 4e-66
 Identities = 144/418 (34%), Positives = 229/418 (54%), Gaps = 9/418 (2%)
 Frame = +3

Query: 174  LSSWKHPPRVLKSSQPAPLKTTNNGLSYSPLQT----FTDEEMMIKNTVKKFAQEQIAPL 341
            +SSW+  P       P+PL       S  P+        +E+  +++T+ KF QE +AP 
Sbjct: 12   VSSWRLRP------SPSPLAVPRRAHSILPVDDDINGLNEEQKQLRHTISKFLQENLAPK 65

Query: 342  VSKMDENSKME--KSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVAL 515
              ++D+ +  +  +   + L   G++GI    +YGG+G  +   VLV+EE+++   +V L
Sbjct: 66   AQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGL 125

Query: 516  VCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRADKDG 692
                 + +  + I R G EAQK  YL KL + E +G+  +SEP+AGSD  S+K +A+K G
Sbjct: 126  SYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKG 185

Query: 693  DYYVINGSKMWITSAEDAGLFLVMANVDPAL--GYKGITCFLVDRDTEGLRVGKPENKLG 866
            D+YV+NG+K WIT+  DA + +V A  D       +GIT F+V++   G    K  +KLG
Sbjct: 186  DHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLG 245

Query: 867  IRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIP 1046
            +R S+TC +  E+ KVP AN++ Q   G    +  L+  R+ +A   LG+ Q   D TIP
Sbjct: 246  MRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIP 305

Query: 1047 YLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYA 1226
            YL  R  FG++I  FQ +Q ++A   T+L A+R   YN A+  + G    K+ +    YA
Sbjct: 306  YLHVREAFGQKIGQFQLMQGKMADMYTRLMASRQYVYNVAKACDEGHIIPKDCAGVILYA 365

Query: 1227 SEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            +E A Q     I+ +G  GY  D+PM ++ RDAK+  I  GTS ++   I +  + ++
Sbjct: 366  AECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 423


>ref|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Mus musculus].
          Length = 421

 Score =  225 bits (573), Expect = 8e-59
 Identities = 135/380 (35%), Positives = 216/380 (56%), Gaps = 5/380 (1%)
 Frame = +3

Query: 276  TDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGAS 455
            T+++   + T +KFA+E+I P+  + D++ +    +I+  ++ GL+        GG G  
Sbjct: 42   TEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWELGLINAHIPESCGGLGLG 101

Query: 456  FFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLATEQ--LGSFC 629
             F + L+ EELA     V    +  N++    +   G + QK  YL ++ TEQ  + ++C
Sbjct: 102  TFDACLITEELAYGCTGVQTAIEA-NSLGQMPVILAGNDQQKKKYLGRM-TEQPMMCAYC 159

Query: 630  LSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMA--NVDPAL-GYKGI 800
            ++EPSAGSD  ++KT+A+K GD YVING KMWIT+   A  + ++A  N DP +   K  
Sbjct: 160  VTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARSNPDPKVPASKAF 219

Query: 801  TCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNK 980
            T F+V+ DT G+ +GK E  +G R S T  +  E+ +VP+ N++   G G+K A+ + ++
Sbjct: 220  TGFIVEADTPGIHIGKKELNMGQRCSDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDR 279

Query: 981  GRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYN 1160
             R  +AA  +GLAQ   D    Y  +R  FGK + + QG+   +A  A ++E ARL    
Sbjct: 280  TRPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQR 339

Query: 1161 AARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTI 1340
            AA  +++GR     AS+AK +A ++A Q     ++  G  G+  +YP+EK  RDAKI  I
Sbjct: 340  AAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQI 399

Query: 1341 YEGTSNIQLNTIAKNVSKEY 1400
            YEGT+ IQ   IA+   ++Y
Sbjct: 400  YEGTAQIQRLIIAREHIEKY 419


>ref|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitochondrial precursor [Mus
            musculus].
          Length = 625

 Score =  220 bits (560), Expect = 2e-57
 Identities = 132/361 (36%), Positives = 209/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            ++KF  E++     K+D+  K+    +E L   GL GI+   +YGG G S  +    + E
Sbjct: 78   LEKFFTEEVDS--RKIDQEGKIPVDTLEKLKSLGLFGIQVPEEYGGLGLSN-TMYARLGE 134

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +  +DAS+ +       +    I   G E QKA YL KL++ E + +FCL+EP++GSD+ 
Sbjct: 135  IISLDASITVTLAAHQAIGLKGIILVGNEEQKAKYLPKLSSGEHIAAFCLTEPASGSDAA 194

Query: 663  SLKTRA--DKDGDYYVINGSKMWITSAEDAGLFLVMANVD--PALGYKG--ITCFLVDRD 824
            S++TRA   +D  Y+++NGSK+WIT+   A +F V A  +   + G K   +T F+V+RD
Sbjct: 195  SIQTRATLSEDKKYFILNGSKVWITNGGLANIFTVFAKTEVVDSDGSKTDKMTAFIVERD 254

Query: 825  TEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQ 1004
              G+  GKPE+KLGIR S+TC V  EN +VP  N++G++G G+K A+  LN GR  + + 
Sbjct: 255  FGGITNGKPEDKLGIRGSNTCEVHFENTRVPVENVLGEVGGGFKVAMNILNSGRFSMGSA 314

Query: 1005 MLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLL-EA 1181
            + G+ +   +LT  Y   R QF + + +F  +Q + A  A +      + Y  + +L + 
Sbjct: 315  VAGMLKKLIELTAEYACTRKQFNRNLSEFGLIQEKFALMAQKAYVMESMAYLTSGMLDQP 374

Query: 1182 GRPFIK-EASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G P    EA+M K ++SE A Q  ++ ++ +G  GY KDYP E+  RDA+I  I+EGT+ 
Sbjct: 375  GFPDCSIEAAMVKVFSSEAAWQCVSEALQILGGSGYMKDYPYERMLRDARILLIFEGTNE 434

Query: 1359 I 1361
            I
Sbjct: 435  I 435


>ref|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 413

 Score =  213 bits (543), Expect = 2e-55
 Identities = 128/381 (33%), Positives = 205/381 (53%), Gaps = 2/381 (0%)
 Frame = +3

Query: 261  PLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYG 440
            P     +E+   +     FA  ++AP +++ D+       V+    Q G  G+      G
Sbjct: 35   PSLGLNEEQKGFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYVRTDVG 94

Query: 441  GTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQL 617
            G+G S   + ++ E LA    S      + N +   +I  FG E Q+  +   L T E+ 
Sbjct: 95   GSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKF 153

Query: 618  GSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKG 797
             S+CL+EP +GSD+ SL T A + GD+Y++NGSK +I+   ++ +++VM     + G KG
Sbjct: 154  ASYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKAFISGGGESDIYVVMCRTGES-GAKG 212

Query: 798  ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 977
            I+C +V++ T GL  GK E K+G  +  T  V  E+  VP AN +G  G G+  A++ LN
Sbjct: 213  ISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGTEGQGFLIAMKGLN 272

Query: 978  KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 1157
             GRI +A+  LG A     LT  +LK R QFG  +   Q LQ Q+A  AT+L A+RL+  
Sbjct: 273  GGRINVASCSLGAAHASVILTQEHLKVRKQFGAPLARSQYLQFQLADMATKLVASRLMIR 332

Query: 1158 NAARLLEAGR-PFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIG 1334
             AA  L+  R   +   SMAK +A+E      N+ ++  G  GY KDY +++Y RD+++ 
Sbjct: 333  TAAVALQEEREDAVALCSMAKLFATEECFAICNQALQMHGGYGYLKDYAVQQYMRDSRVH 392

Query: 1335 TIYEGTSNIQLNTIAKNVSKE 1397
             I EG++ +    I++N+ ++
Sbjct: 393  QILEGSNEVMRMLISRNLLQD 413


>ref|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            precursor [Mus musculus].
          Length = 656

 Score =  200 bits (508), Expect = 3e-51
 Identities = 121/361 (33%), Positives = 200/361 (55%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D   K+E   ++GL + G  G++   + GG G S      + E 
Sbjct: 110  VARFFEEVNDP--AKNDALEKVEDDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEI 167

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLATEQ-LGSFCLSEPSAGSDSF 662
            +   D  V++      ++    I  +GT+AQ+  YL ++A+ Q L +FCL+EPS+GSD  
Sbjct: 168  VGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQALAAFCLTEPSSGSDVA 227

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S+++ A     G YY +NGSK+WI++   A +F V A     D A G   + IT F+V+R
Sbjct: 228  SIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEKITAFVVER 287

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  +  KVP  N++G++G G+K A+  LN GR G+AA
Sbjct: 288  SFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPSENVLGEVGDGFKVAVNILNNGRFGMAA 347

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             + G  +      + +   R QFG +I +F  +Q ++A  A        + Y  +  ++ 
Sbjct: 348  TLAGTMKSLIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAILQYVTESMAYMLSANMDQ 407

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G + F  EA+++K + SE A +  ++CI+ MG +G+ K+  +E+  RD +I  I+EG ++
Sbjct: 408  GFKDFQIEAAISKIFCSEAAWKVADECIQIMGGMGFMKEPGVERVLRDIRIFRIFEGAND 467

Query: 1359 I 1361
            I
Sbjct: 468  I 468


>ref|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Mus musculus].
          Length = 430

 Score =  192 bits (488), Expect = 5e-49
 Identities = 116/393 (29%), Positives = 212/393 (53%), Gaps = 3/393 (0%)
 Frame = +3

Query: 219  PAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLF 398
            P+  K T+ G+     + F+ E  + + +V+KF QE++ P  ++ ++  ++ + V E   
Sbjct: 39   PSAKKLTDIGIR----RIFSSEHDIFRESVRKFFQEEVIPHHTEWEKAGEVSREVWEKAG 94

Query: 399  QQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQ 578
            +QGL+GI    K+GG G    S+ +  EE A  + +      L + ++   I  +GT+ Q
Sbjct: 95   KQGLLGINIAEKHGGIGGDLLSTAVTWEEQAYSNCT-GPGFSLHSDIVMPYIANYGTKEQ 153

Query: 579  KATYLTKL-ATEQLGSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLF 755
               ++ ++ A + +G+  ++EP AGSD   ++T A + G  +++NGSK++IT+   + L 
Sbjct: 154  IEKFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLV 213

Query: 756  LVMA--NVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANI 929
            +V+A  N +      GI+ FLV+   +G   G+  +K+G++A  T  +  E+ ++P   +
Sbjct: 214  IVVAVTNREARSPAHGISLFLVENGMKGFIKGRKLHKMGMKAQDTAELFFEDVRLPANAL 273

Query: 930  VGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQ 1109
            +G+   G+ Y +Q L + R+ IA   +   +  F+ T  Y+K+R  FGK +   Q +QH+
Sbjct: 274  LGEENKGFYYLMQELPQERLLIAELAISACEFMFEETRNYVKQRKAFGKTVAHIQTVQHK 333

Query: 1110 VAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYT 1289
            +A   T +   R    +  +L E  R     ASMAKY+ASE+      +C++  G  GY 
Sbjct: 334  LAELKTHICVTRAFVDSCLQLHETKRLDSGSASMAKYWASELQNSVAYECVQLHGGWGYM 393

Query: 1290 KDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNV 1388
             +YP+ K + DA++  IY GT+ I    IA+ +
Sbjct: 394  WEYPIAKAYVDARVQPIYGGTNEIMKELIARQI 426


>ref|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 438

 Score =  145 bits (367), Expect = 6e-35
 Identities = 106/417 (25%), Positives = 199/417 (47%), Gaps = 7/417 (1%)
 Frame = +3

Query: 162  FPTCLSSWKHPPRVLKSSQPAPLKTTNNGLSYS-PL---QTFTDEEMMIKNTVKKFAQEQ 329
            FP    +W       + +Q  P K++     +  PL   +  T +E +I++T + + QE+
Sbjct: 19   FPRFPRTWSSAAAHTEKTQIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQER 78

Query: 330  IAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASV 509
            +   +   + N    + ++  + + G++G  T   YG  G S  +  L+  EL +VD+  
Sbjct: 79   LMSRILLANRNEVFHRDIVYEMGELGVLG-PTIKGYGCAGVSSVAYGLLTRELERVDSGY 137

Query: 510  ALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRA-- 680
              +  +Q++++   I  +G+E Q+  YL  LA  E LG F L+EP+ GSD   ++TRA  
Sbjct: 138  RSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARH 197

Query: 681  DKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENK 860
            +     Y ++G+K WIT++  A LF+V A  +       I  F++++   GL   + E K
Sbjct: 198  NPSNQSYTLSGTKTWITNSPVADLFIVWARCED----NCIRGFILEKGMRGLSAPRIEGK 253

Query: 861  LGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLT 1040
              +RAS+T  + +++ +VPE N++  +          LN  R GI   +LG A+ C    
Sbjct: 254  FSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNTARYGITWGVLGAAEFCLHTA 312

Query: 1041 IPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKY 1220
              Y  +R+QFG  +   Q +Q ++A   T++           RL +  +   +  SM K 
Sbjct: 313  RQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLKR 372

Query: 1221 YASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVS 1391
                 A+    +  + +G  G + +Y + ++  + +    YEGT +I    + + ++
Sbjct: 373  NNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAIT 429


>ref|NP_032123.2| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 438

 Score =  145 bits (367), Expect = 6e-35
 Identities = 106/417 (25%), Positives = 199/417 (47%), Gaps = 7/417 (1%)
 Frame = +3

Query: 162  FPTCLSSWKHPPRVLKSSQPAPLKTTNNGLSYS-PL---QTFTDEEMMIKNTVKKFAQEQ 329
            FP    +W       + +Q  P K++     +  PL   +  T +E +I++T + + QE+
Sbjct: 19   FPRFPRTWSSAAAHTEKTQIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQER 78

Query: 330  IAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASV 509
            +   +   + N    + ++  + + G++G  T   YG  G S  +  L+  EL +VD+  
Sbjct: 79   LMSRILLANRNEVFHRDIVYEMGELGVLG-PTIKGYGCAGVSSVAYGLLTRELERVDSGY 137

Query: 510  ALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRA-- 680
              +  +Q++++   I  +G+E Q+  YL  LA  E LG F L+EP+ GSD   ++TRA  
Sbjct: 138  RSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARH 197

Query: 681  DKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENK 860
            +     Y ++G+K WIT++  A LF+V A  +       I  F++++   GL   + E K
Sbjct: 198  NPSNQSYTLSGTKTWITNSPVADLFIVWARCED----NCIRGFILEKGMRGLSAPRIEGK 253

Query: 861  LGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLT 1040
              +RAS+T  + +++ +VPE N++  +          LN  R GI   +LG A+ C    
Sbjct: 254  FSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNTARYGITWGVLGAAEFCLHTA 312

Query: 1041 IPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKY 1220
              Y  +R+QFG  +   Q +Q ++A   T++           RL +  +   +  SM K 
Sbjct: 313  RQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLKR 372

Query: 1221 YASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVS 1391
                 A+    +  + +G  G + +Y + ++  + +    YEGT +I    + + ++
Sbjct: 373  NNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAIT 429


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,916,521
Number of extensions: 1233297
Number of successful extensions: 3186
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3155
Number of HSP's successfully gapped: 15
Length of query: 475
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 370
Effective length of database: 12,463,779
Effective search space: 4611598230
Effective search space used: 4611598230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003036
         (1427 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001926332.2| PREDICTED: short/branched chain specific acy...   826   0.0  
Alignment   gi|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mi...   271   5e-73
Alignment   gi|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial ...   249   2e-66
Alignment   gi|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, m...   225   5e-59
Alignment   gi|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mit...   221   6e-58
Alignment   gi|NP_001230503.1| acyl-CoA dehydrogenase family, member 8 [Sus...   215   4e-56
Alignment   gi|XP_003354989.1| PREDICTED: very long-chain specific acyl-CoA...   212   5e-55
Alignment   gi|XP_003131991.2| PREDICTED: very long-chain specific acyl-CoA...   212   5e-55
Alignment   gi|XP_003356478.1| PREDICTED: acyl-CoA dehydrogenase-like [Sus ...   196   3e-50
Alignment   gi|NP_999062.1| long-chain specific acyl-CoA dehydrogenase, mit...   195   5e-50

>ref|XP_001926332.2| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase,
            mitochondrial [Sus scrofa].
          Length = 431

 Score =  826 bits (2134), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)
 Frame = +3

Query: 156  TNFPTCLSSWKHPPRVLKSSQPAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIA 335
            TNFPTCLSSWKHPPRVLKSSQPAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIA
Sbjct: 17   TNFPTCLSSWKHPPRVLKSSQPAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIA 76

Query: 336  PLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVAL 515
            PLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVAL
Sbjct: 77   PLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVAL 136

Query: 516  VCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGD 695
            VCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGD
Sbjct: 137  VCDLQNTVINDLIGRFGTEAQKATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGD 196

Query: 696  YYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRA 875
            YYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRA
Sbjct: 197  YYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRA 256

Query: 876  SSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLK 1055
            SSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLK
Sbjct: 257  SSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLK 316

Query: 1056 ERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEV 1235
            ERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEV
Sbjct: 317  ERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEV 376

Query: 1236 AIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            AIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY
Sbjct: 377  AIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKEY 431


>ref|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Sus scrofa].
          Length = 413

 Score =  271 bits (694), Expect = 5e-73
 Identities = 141/372 (37%), Positives = 237/372 (63%), Gaps = 2/372 (0%)
 Frame = +3

Query: 291  MIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSV 470
            M++ T + FA++++ P+ +++D+  +  ++ ++ + + GLM ++   +  G G  + +  
Sbjct: 40   MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 99

Query: 471  LVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSA 647
            + +EE+++  AS  ++  + N +    I +FG++ QK  ++T   + +++G F LSEP  
Sbjct: 100  IAMEEISRGCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 159

Query: 648  GSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDT 827
            GSD+ +  T A  D D +V++G+K WIT+A +A   +V A+ D +L  KGI+ FLV   T
Sbjct: 160  GSDAGAAATTAQADHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT 219

Query: 828  EGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQM 1007
             GL +GK E+KLGIRASST  +  E+ ++P+ N++G+ G G+K A+++L+ GRIGIA++ 
Sbjct: 220  AGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMKTLDMGRIGIASKA 279

Query: 1008 LGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGR 1187
            LG++Q   D  + Y + R  FG  +   QG+Q ++A  A  LE+ARLLT+ AA L +  +
Sbjct: 280  LGISQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK 339

Query: 1188 -PFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQ 1364
             PFIKE +MAK  ASE A   T++ I+ +G +GY  + P E+++RDA+I  IYEGTS IQ
Sbjct: 340  NPFIKEPAMAKLAASEAATAITHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQ 399

Query: 1365 LNTIAKNVSKEY 1400
               IA ++ K Y
Sbjct: 400  RLVIAGHLLKSY 411


>ref|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial [Sus scrofa].
          Length = 426

 Score =  249 bits (637), Expect = 2e-66
 Identities = 147/421 (34%), Positives = 234/421 (55%), Gaps = 13/421 (3%)
 Frame = +3

Query: 177  SSWKHPPRVL--------KSSQPAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQI 332
            +SW+  P++         ++S   P+    NGLS        +E+  ++ T+ KF QE +
Sbjct: 13   ASWRPRPQLQAFSGLITQQASSLLPVDDVINGLS--------EEQKQLRQTMTKFLQEHL 64

Query: 333  APLVSKMDENSKME--KSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDAS 506
            AP   ++D++++ +  +   + L   G++GI T  +YGGTG  +   V+V+EE+++   +
Sbjct: 65   APQAQEIDQSNEFKNLREFWKQLGNLGVLGITTPVQYGGTGLGYLEHVVVMEEISRASGA 124

Query: 507  VALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSFSLKTRAD 683
            V L     + +  + I R G EAQK  YL KL + E +G+  +SE +AGSD  S+K +AD
Sbjct: 125  VGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEYIGALAMSETNAGSDVVSMKLKAD 184

Query: 684  KDGDYYVINGSKMWITSAEDAGLFLVMANVDPAL--GYKGITCFLVDRDTEGLRVGKPEN 857
            K GDYYV+NG+K WIT+  DA + +V A  D A     +GIT F+V++   G    K  +
Sbjct: 185  KKGDYYVLNGNKFWITNGPDADVLVVYAKTDLAAVPPSRGITAFIVEKGMPGFSTSKKLD 244

Query: 858  KLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDL 1037
            KLG+R S+TC +  E+ KVP  NI+GQ+  G    +  L+  R+ +A   LGL Q   D 
Sbjct: 245  KLGMRGSNTCELIFEDCKVPAVNILGQLSKGVYVLMSGLDLERLVLAGGPLGLMQAVLDH 304

Query: 1038 TIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAK 1217
            TIPYL  R  FG++I  FQ +Q ++A   T+L A R   YN A+  + G    K+ +   
Sbjct: 305  TIPYLHMREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTPKDCAGVV 364

Query: 1218 YYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNVSKE 1397
             Y++E A +     I+ +G  GY  D+PM ++ RDAK+  I  GTS ++   I +  + +
Sbjct: 365  LYSAECATKVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLIIGRAFNTD 424

Query: 1398 Y 1400
            +
Sbjct: 425  F 425


>ref|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Sus scrofa].
          Length = 421

 Score =  225 bits (573), Expect = 5e-59
 Identities = 133/375 (35%), Positives = 210/375 (56%), Gaps = 6/375 (1%)
 Frame = +3

Query: 276  TDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGAS 455
            T+++   + T +KFA+E+I P+ ++ D   +    +++  ++ GLM       +GG G  
Sbjct: 42   TEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLG 101

Query: 456  FFSSVLVIEELAKVDASVALVCDLQNTV--INDLIGRFGTEAQKATYLTKLATEQLG-SF 626
               S L+ EELA     V    +  NT+  +  +IG  G   Q+  YL ++  E L  ++
Sbjct: 102  IIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIG--GNYQQQKKYLGRMTEEPLMCAY 158

Query: 627  CLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDP---ALGYKG 797
            C++EP AGSD   +KT+A+K GD Y+ING KMWIT+   A  + ++A  DP   A   K 
Sbjct: 159  CVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKA 218

Query: 798  ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 977
             T F+V+ DT G+++G+ E  +G R S T  +  E+ +VP+ N++   G G+K A+ + +
Sbjct: 219  FTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFD 278

Query: 978  KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 1157
            K R  +AA  +GLAQ   D    Y   R  FGK + + QG+   +A  A +++ ARL   
Sbjct: 279  KTRPSVAAGAVGLAQRALDEATKYALGRKTFGKLLAEHQGISFLLADMAMKVDLARLSYQ 338

Query: 1158 NAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGT 1337
             AA  +++GR     AS+AK YA+++A Q     ++  G  G+  +YP+EK  RDAKI  
Sbjct: 339  RAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQ 398

Query: 1338 IYEGTSNIQLNTIAK 1382
            IYEGT+ IQ   IA+
Sbjct: 399  IYEGTAQIQRIIIAR 413


>ref|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Sus
            scrofa].
          Length = 349

 Score =  221 bits (564), Expect = 6e-58
 Identities = 124/326 (38%), Positives = 187/326 (57%), Gaps = 3/326 (0%)
 Frame = +3

Query: 432  KYGGTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT- 608
            +YGGTG  +   V+V+EE+++   +V L     + +  + I R G EAQK  YL KL + 
Sbjct: 23   QYGGTGLGYLEHVVVMEEISRASGAVGLSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISG 82

Query: 609  EQLGSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPAL- 785
            E +G+  +SE +AGSD  S+K +ADK GDYYV+NG+K WIT+  DA + +V A  D A  
Sbjct: 83   EYIGALAMSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLVVYAKTDLAAV 142

Query: 786  -GYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYA 962
               +GIT F+V++   G    K  +KLG+R S+TC +  E+ KVP  NI+GQ+  G    
Sbjct: 143  PPSRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAVNILGQLSKGVYVL 202

Query: 963  IQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAA 1142
            +  L+  R+ +A   LGL Q   D TIPYL  R  FG++I  FQ +Q ++A   T+L A 
Sbjct: 203  MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHMREAFGQKIGHFQLMQGKMADMYTRLMAC 262

Query: 1143 RLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRD 1322
            R   YN A+  + G    K+ +    Y++E A +     I+ +G  GY  D+PM ++ RD
Sbjct: 263  RQYVYNVAKACDEGHCTPKDCAGVVLYSAECATKVALDGIQCLGGNGYINDFPMGRFLRD 322

Query: 1323 AKIGTIYEGTSNIQLNTIAKNVSKEY 1400
            AK+  I  GTS ++   I +  + ++
Sbjct: 323  AKLYEIGAGTSEVRRLIIGRAFNTDF 348


>ref|NP_001230503.1| acyl-CoA dehydrogenase family, member 8 [Sus scrofa].
          Length = 415

 Score =  215 bits (548), Expect = 4e-56
 Identities = 125/381 (32%), Positives = 210/381 (55%), Gaps = 2/381 (0%)
 Frame = +3

Query: 261  PLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYG 440
            P     +E+   +     FA +++ P +++ D+       ++    + G  G+      G
Sbjct: 37   PSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVG 96

Query: 441  GTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQL 617
            G+G S   + ++ E LA    S      + N  +  +I  FG E Q+  +   L T E+ 
Sbjct: 97   GSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKF 155

Query: 618  GSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKG 797
             S+CL+EP +GSD+ SL T A++ GD+Y++NGSK +I+   +A +++VM       G+KG
Sbjct: 156  ASYCLTEPGSGSDAASLLTSAEQQGDHYILNGSKAFISGGGEADIYVVMCRTGGP-GHKG 214

Query: 798  ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 977
            I+C +V++ T GL  GK E K+G  +  T  V  E+  VP AN +G  G G+  A++ LN
Sbjct: 215  ISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIAMRGLN 274

Query: 978  KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 1157
             GRI +A+  LG A     LT  +LK R QFG+ + + Q LQ ++A  AT+L A+RL+  
Sbjct: 275  GGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIR 334

Query: 1158 NAARLLEAGR-PFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIG 1334
            +AA  L+  R   +   SMAK +A++   +  N+ ++  G  GY KDY +++Y RD+++ 
Sbjct: 335  SAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVH 394

Query: 1335 TIYEGTSNIQLNTIAKNVSKE 1397
             I EG++ +    I+K++ +E
Sbjct: 395  QILEGSNEVMRMLISKSLLQE 415


>ref|XP_003354989.1| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
            mitochondrial-like isoform 2 [Sus scrofa].
          Length = 633

 Score =  212 bits (539), Expect = 5e-55
 Identities = 127/361 (35%), Positives = 206/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D   ++E++ ++GL + G  G++   + GG G        ++E 
Sbjct: 87   VSRFFEEVNDP--AKNDMLERVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEI 144

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +   D  V +V     ++    I  FGT+AQK  YL K+A+ E + +FCL+EPS+GSD+ 
Sbjct: 145  VGMHDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAA 204

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S+++ A     G YY +NGSK+WI++   A LF V A     DPA G   + IT FLV+R
Sbjct: 205  SIRSSAVPSPCGKYYTLNGSKIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVER 264

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  +  +VP  N++G++G G+K A+  LN GR G+AA
Sbjct: 265  GFGGVTHGPPEKKMGIKASNTAEVYFDEVQVPTENVLGEVGGGFKVAMHILNNGRFGMAA 324

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             M G  +      + +   R QFG++I +F  +Q ++A  A        + Y  +  ++ 
Sbjct: 325  AMAGTMKAIIAKAVNHAANRTQFGEKIHNFGVIQEKLARMAMLQYVTESMAYMVSANMDQ 384

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G   F  EA+++K + SE A + T++CI+ MG +G+ K+  +E+  RD +I  I+EGT++
Sbjct: 385  GSTDFQIEAAISKIFGSEAAWKVTDECIQVMGGMGFMKEPGVERVLRDLRIFRIFEGTND 444

Query: 1359 I 1361
            I
Sbjct: 445  I 445


>ref|XP_003131991.2| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
            mitochondrial-like isoform 1 [Sus scrofa].
          Length = 652

 Score =  212 bits (539), Expect = 5e-55
 Identities = 127/361 (35%), Positives = 206/361 (57%), Gaps = 9/361 (2%)
 Frame = +3

Query: 306  VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 485
            V +F +E   P  +K D   ++E++ ++GL + G  G++   + GG G        ++E 
Sbjct: 106  VSRFFEEVNDP--AKNDMLERVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEI 163

Query: 486  LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 662
            +   D  V +V     ++    I  FGT+AQK  YL K+A+ E + +FCL+EPS+GSD+ 
Sbjct: 164  VGMHDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAA 223

Query: 663  SLKTRADKD--GDYYVINGSKMWITSAEDAGLFLVMANV---DPALGY--KGITCFLVDR 821
            S+++ A     G YY +NGSK+WI++   A LF V A     DPA G   + IT FLV+R
Sbjct: 224  SIRSSAVPSPCGKYYTLNGSKIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVER 283

Query: 822  DTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAA 1001
               G+  G PE K+GI+AS+T  V  +  +VP  N++G++G G+K A+  LN GR G+AA
Sbjct: 284  GFGGVTHGPPEKKMGIKASNTAEVYFDEVQVPTENVLGEVGGGFKVAMHILNNGRFGMAA 343

Query: 1002 QMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEA 1181
             M G  +      + +   R QFG++I +F  +Q ++A  A        + Y  +  ++ 
Sbjct: 344  AMAGTMKAIIAKAVNHAANRTQFGEKIHNFGVIQEKLARMAMLQYVTESMAYMVSANMDQ 403

Query: 1182 G-RPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSN 1358
            G   F  EA+++K + SE A + T++CI+ MG +G+ K+  +E+  RD +I  I+EGT++
Sbjct: 404  GSTDFQIEAAISKIFGSEAAWKVTDECIQVMGGMGFMKEPGVERVLRDLRIFRIFEGTND 463

Query: 1359 I 1361
            I
Sbjct: 464  I 464


>ref|XP_003356478.1| PREDICTED: acyl-CoA dehydrogenase-like [Sus scrofa].
          Length = 553

 Score =  196 bits (498), Expect = 3e-50
 Identities = 108/270 (40%), Positives = 160/270 (59%), Gaps = 3/270 (1%)
 Frame = +3

Query: 582  ATYLTKLATEQLGSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLV 761
            +T L  L TE   ++C++EP AGSD   +KT+A+K GD Y+ING KMWIT+   A  + +
Sbjct: 276  STKLFTLITENFKAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFL 335

Query: 762  MANVDP---ALGYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIV 932
            +A  DP   A   K  T F+V+ DT G+++G+ E  +G R S T  +  E+ +VP+ N++
Sbjct: 336  LARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVL 395

Query: 933  GQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQV 1112
               G G+K A+ + +K R  +AA  +GLAQ   D    Y  ER  FGK + + QG+   +
Sbjct: 396  TGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLL 455

Query: 1113 AHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTK 1292
            A  A ++E ARL    AA  +++GR     AS+AK YA+++A Q     ++  G  G+  
Sbjct: 456  ADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNT 515

Query: 1293 DYPMEKYFRDAKIGTIYEGTSNIQLNTIAK 1382
            +YP+EK  RDAKI  IYEGT+ IQ   IA+
Sbjct: 516  EYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 545


>ref|NP_999062.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Sus scrofa].
          Length = 430

 Score =  195 bits (496), Expect = 5e-50
 Identities = 114/393 (29%), Positives = 214/393 (54%), Gaps = 3/393 (0%)
 Frame = +3

Query: 219  PAPLKTTNNGLSYSPLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLF 398
            P+  K T+ G+     + F+ E  + + +V+KF QE++ P  ++ ++  ++ + + E   
Sbjct: 39   PSAKKLTDIGIR----RIFSSEHDIFRESVRKFFQEEVIPHHAEWEKAGEVSRELWEKAG 94

Query: 399  QQGLMGIETEPKYGGTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQ 578
            +QGL+GI    ++GG G   +S+ +V EE A  + +      L + ++   I  +G+E Q
Sbjct: 95   KQGLLGINIAERHGGIGGDLYSAAIVWEEQAYSNCT-GPGFSLHSDIVMPYIANYGSEEQ 153

Query: 579  KATYLTKL-ATEQLGSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSA--EDAG 749
               ++ ++ A + +G+  ++EP AGSD   ++T A KDG  +++NGSK++IT+    D  
Sbjct: 154  IKHFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVV 213

Query: 750  LFLVMANVDPALGYKGITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANI 929
            + + + N +      GI+ FLV+   +G   G+  +K+G++A  T  +  E+ ++P + +
Sbjct: 214  IVVAVTNREARSPAHGISLFLVENGMKGFVKGRKLHKIGLKAQDTAELFFEDVRLPASAL 273

Query: 930  VGQIGHGYKYAIQSLNKGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQ 1109
            +G+   G+ Y +Q L + R+ IA   +  ++  F+ T  Y+K+R  FGK +   Q +QH+
Sbjct: 274  LGEENKGFYYLMQELPQERLLIAELAVSASEFMFEETRNYVKQRKAFGKTVAHIQTVQHK 333

Query: 1110 VAHTATQLEAARLLTYNAARLLEAGRPFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYT 1289
            +A   T +   R    +  +L E  R     ASMAKY+ASE+       C++  G  GY 
Sbjct: 334  LAELKTHICVTRAFVDSCLQLHETKRLESAAASMAKYWASELQNSVAYDCVQLHGGWGYM 393

Query: 1290 KDYPMEKYFRDAKIGTIYEGTSNIQLNTIAKNV 1388
             +YP+ + + DA++  IY GT+ I    IA+ +
Sbjct: 394  WEYPIARAYVDARVQPIYGGTNEIMKELIAREI 426


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,489,983
Number of extensions: 910464
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2310
Number of HSP's successfully gapped: 20
Length of query: 475
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 372
Effective length of database: 8,779,541
Effective search space: 3265989252
Effective search space used: 3265989252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003036
         (1427 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         412   e-112

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  412 bits (208), Expect = e-112
 Identities = 208/208 (100%)
 Strand = Plus / Plus

                                                                             
Query: 407       gttgatgggtattgaaactgaaccaaaatatggaggaacaggagcttcattcttttcctc 466
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144177905 gttgatgggtattgaaactgaaccaaaatatggaggaacaggagcttcattcttttcctc 144177964

                                                                             
Query: 467       tgtcctggtgatagaggaattagccaaggttgatgcatctgtggctctggtgtgtgacct 526
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144177965 tgtcctggtgatagaggaattagccaaggttgatgcatctgtggctctggtgtgtgacct 144178024

                                                                             
Query: 527       ccagaacacagtaattaacgatctgattgggagatttggaacagaagcacagaaggctac 586
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144178025 ccagaacacagtaattaacgatctgattgggagatttggaacagaagcacagaaggctac 144178084

                                             
Query: 587       ctatttgactaagctagctacggaacaa 614
                 ||||||||||||||||||||||||||||
Sbjct: 144178085 ctatttgactaagctagctacggaacaa 144178112



 Score =  341 bits (172), Expect = 6e-91
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                             
Query: 615       ttaggaagtttctgcctttcggagccttcagcaggtagcgattcattctctttgaagacc 674
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144178638 ttaggaagtttctgcctttcggagccttcagcaggtagcgattcattctctttgaagacc 144178697

                                                                             
Query: 675       agagctgacaaagatggagattattatgtcatcaacgggtcaaagatgtggatcaccagt 734
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144178698 agagctgacaaagatggagattattatgtcatcaacgggtcaaagatgtggatcaccagt 144178757

                                                                     
Query: 735       gctgaggatgctgggctcttcctggtgatggcaaatgtagaccctgcccttg 786
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144178758 gctgaggatgctgggctcttcctggtgatggcaaatgtagaccctgcccttg 144178809



 Score =  313 bits (158), Expect = 1e-82
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                             
Query: 149       gctaagaacaaacttcccaacttgcctgtcttcatggaaacatcctcctcgtgtcctgaa 208
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144174318 gctaagaacaaacttcccaacttgcctgtcttcatggaaacatcctcctcgtgtcctgaa 144174377

                                                                             
Query: 209       atcctcccagccagctccactcaaaacaacaaataatggcctgtcttacagccccctgca 268
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144174378 atcctcccagccagctccactcaaaacaacaaataatggcctgtcttacagccccctgca 144174437

                                                       
Query: 269       gacatttacagatgaggagatgatgataaagaacacag 306
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 144174438 gacatttacagatgaggagatgatgataaagaacacag 144174475



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         gcggggctctggcacctgtcccccgcacccgaggcgtcggagcgcagagcagaagcgcct 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144149535 gcggggctctggcacctgtcccccgcacccgaggcgtcggagcgcagagcagaagcgcct 144149594

                                                                             
Query: 61        actcaaggccttgcgaaattgtccgaggtaccagtcccggtgcgctgatggagggatccg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144149595 actcaaggccttgcgaaattgtccgaggtaccagtcccggtgcgctgatggagggatccg 144149654

                                              
Query: 121       ctggtcggctgctgcgcggcagcgcgctg 149
                 |||||||||||||||||||||||||||||
Sbjct: 144149655 ctggtcggctgctgcgcggcagcgcgctg 144149683



 Score =  283 bits (143), Expect = 1e-73
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1092      caggggctccaacaccaagtggctcatacggccacccagctagaagctgcgagactgctc 1151
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144187568 caggggctccaacaccaagtggctcatacggccacccagctagaagctgcgagactgctc 144187627

                                                                             
Query: 1152      acatacaacgctgctagacttctagaagctggaaggccattcattaaggaagcatctatg 1211
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144187628 acatacaacgctgctagacttctagaagctggaaggccattcattaaggaagcatctatg 144187687

                                        
Query: 1212      gccaaatactatgcatcagaggt 1234
                 |||||||||||||||||||||||
Sbjct: 144187688 gccaaatactatgcatcagaggt 144187710



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                             
Query: 786       gggtataaaggaattacctgcttcttggtagatcgtgataccgagggcctccgtgtaggg 845
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144180027 gggtataaaggaattacctgcttcttggtagatcgtgataccgagggcctccgtgtaggg 144180086

                                                                             
Query: 846       aaaccggagaacaaattgggaatcagagcttcttctacctgcccggtaacacttgaaaat 905
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144180087 aaaccggagaacaaattgggaatcagagcttcttctacctgcccggtaacacttgaaaat 144180146

                         
Query: 906       gccaaggt 913
                 ||||||||
Sbjct: 144180147 gccaaggt 144180154



 Score =  208 bits (105), Expect = 6e-51
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1231      aggttgcaatccaaacaactaataagtgtattgagtggatgggagcagtaggctacacca 1290
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144188644 aggttgcaatccaaacaactaataagtgtattgagtggatgggagcagtaggctacacca 144188703

                                                              
Query: 1291      aagattatcctatggaaaagtatttccgagacgcgaagattggta 1335
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144188704 aagattatcctatggaaaagtatttccgagacgcgaagattggta 144188748



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1332      ggtacaatatatgaaggaacgtccaacatacagctgaacaccatcgcaaagaatgtcagt 1391
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144189718 ggtacaatatatgaaggaacgtccaacatacagctgaacaccatcgcaaagaatgtcagt 144189777

                                                     
Query: 1392      aaggaatactgacagcctcaggagtagaaaccctcc 1427
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 144189778 aaggaatactgacagcctcaggagtagaaaccctcc 144189813



 Score =  188 bits (95), Expect = 6e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                             
Query: 910       aggttccagaagccaatatcgtgggacagattggacatggctataagtacgccattcaga 969
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144181943 aggttccagaagccaatatcgtgggacagattggacatggctataagtacgccattcaga 144182002

                                                    
Query: 970       gtcttaataaaggtagaataggaattgcggcacag 1004
                 |||||||||||||||||||||||||||||||||||
Sbjct: 144182003 gtcttaataaaggtagaataggaattgcggcacag 144182037



 Score =  188 bits (95), Expect = 6e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1001      acagatgctgggactggctcaaggatgttttgacctcactattccataccttaaagaaag 1060
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144185232 acagatgctgggactggctcaaggatgttttgacctcactattccataccttaaagaaag 144185291

                                                    
Query: 1061      ggtacaatttggaaagagaatattcgattttcagg 1095
                 |||||||||||||||||||||||||||||||||||
Sbjct: 144185292 ggtacaatttggaaagagaatattcgattttcagg 144185326



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                             
Query: 303       acagttaaaaaatttgcccaggaacaaattgctcctttggtttc 346
                 ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144174883 acagttaaaaaatttgcccaggaacaaattgctcctttggtttc 144174926


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,585,807
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 11
Length of query: 1427
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1406
Effective length of database: 2,808,413,156
Effective search space: 3948628897336
Effective search space used: 3948628897336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)