Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003043
(1416 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030199.1| phospholipid transfer protein [Bos taurus]. 756 0.0
Alignment gi|NP_776320.1| bactericidal permeability-increasing protein pr... 156 4e-38
Alignment gi|NP_001192763.1| bactericidal/permeability-increasing protein... 154 1e-37
Alignment gi|XP_002687717.1| PREDICTED: bactericidal/permeability-increas... 154 1e-37
Alignment gi|NP_001033763.1| lipopolysaccharide-binding protein precursor... 132 1e-30
Alignment gi|XP_002692362.1| PREDICTED: lipopolysaccharide-binding protei... 127 2e-29
Alignment gi|XP_592903.2| PREDICTED: lipopolysaccharide-binding protein-l... 127 2e-29
>ref|NP_001030199.1| phospholipid transfer protein [Bos taurus].
Length = 510
Score = 756 bits (1953), Expect = 0.0
Identities = 385/417 (92%), Positives = 398/417 (95%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 344
ELPGCKIRITSKALELVKQEGLRFLEQELET+TIPDLRG EGHF+YNISEVKVTELQLT
Sbjct: 32 ELPGCKIRITSKALELVKQEGLRFLEQELETVTIPDLRGSEGHFFYNISEVKVTELQLTF 91
Query: 345 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTG 524
SELHFQP+QEL+LQINN S GLRFRRQLLYWFFYDGGYINASAEGVSI TALQLSRD G
Sbjct: 92 SELHFQPDQELVLQINNASWGLRFRRQLLYWFFYDGGYINASAEGVSIHTALQLSRDTIG 151
Query: 525 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 704
RIKVSNVSCQASVSRMHAAFGGT KKVYEFLSTFITSGMRFLLNQQICPVLYHAG VLLN
Sbjct: 152 RIKVSNVSCQASVSRMHAAFGGTLKKVYEFLSTFITSGMRFLLNQQICPVLYHAGTVLLN 211
Query: 705 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQL 884
SLLDTVPVR AVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPL E NWSL NRAVEPQL
Sbjct: 212 SLLDTVPVRSAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLTEANWSLSNRAVEPQL 271
Query: 885 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 1064
QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDM+LRA+YFGSIVL+SPA
Sbjct: 272 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMVLRASYFGSIVLMSPA 331
Query: 1065 VIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 1244
VIDSPLKLELRV+ PPRCTIKP+GTT+SVTASVTIALVPP QPEVQLSSM MDARLSAKM
Sbjct: 332 VIDSPLKLELRVMEPPRCTIKPSGTTVSVTASVTIALVPPNQPEVQLSSMIMDARLSAKM 391
Query: 1245 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQ P +T+LQI VMPML+ERTWRGV
Sbjct: 392 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQTPLKTLLQIAVMPMLNERTWRGV 448
>ref|NP_776320.1| bactericidal permeability-increasing protein precursor [Bos taurus].
Length = 482
Score = 156 bits (395), Expect = 4e-38
Identities = 116/426 (27%), Positives = 207/426 (48%), Gaps = 12/426 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGRE-----GHFYYNISEVKVTELQ 335
PG RIT K L+ Q+G+ L++ELE ITIP+ G G Y+ + +
Sbjct: 29 PGIVARITQKGLDYACQQGVLTLQKELEKITIPNFSGNFKIKYLGKGQYSFFSMVIQGFN 88
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L +S++ P++ L L I + S+ +R + + F GG + S EG+SI L L D
Sbjct: 89 LPNSQIRPLPDKGLDLSIRDASIKIRGKWKARKNFIKLGGNFDLSVEGISILAGLNLGYD 148
Query: 516 P-TGRIKVSNVSCQASVS--RMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHA 686
P +G V+ SC + ++ R+H + G + + + I S ++ + ++IC V+
Sbjct: 149 PASGHSTVTCSSCSSGINTVRIHIS-GSSLGWLIQLFRKRIESLLQKSMTRKICEVVTST 207
Query: 687 GMVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNR 866
L T+PV +D++ G+DYSL+ P A+ +NLD +G F+ LA + P
Sbjct: 208 VSSKLQPYFQTLPVTTKLDKVAGVDYSLVAPPRATANNLDWLLKGEFFSLAHRS---PPP 264
Query: 867 AVEPQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYF 1037
P L + +RMVY+ SE+FF++A Y +AGAL L+L D +P + L +F
Sbjct: 265 FAPPALAFPSDHDRMVYLGISEYFFNTAGFVYQKAGALNLTLRDDMIPKESKFRLTTKFF 324
Query: 1038 GSIV-LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSM 1214
G ++ ++ D ++L + PP+ T+KP+ + + P L +
Sbjct: 325 GILIPQVAKMFPDMQMQLFIWASLPPKLTMKPSSLDLIFVLDTQAFAILPNSSLDPLFLL 384
Query: 1215 TMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLH 1394
M+ LS + + L +L L + + S + ++ LQ+ ++ V+P+++
Sbjct: 385 EMNLNLSVVVGAKSDRLIGELRLDKLLLELKHSDIGPFSVESLQSVINYVMPTIVLPVIN 444
Query: 1395 ERTWRG 1412
++ +G
Sbjct: 445 KKLQKG 450
>ref|NP_001192763.1| bactericidal/permeability-increasing protein-like 2 [Bos taurus].
Length = 508
Score = 154 bits (390), Expect = 1e-37
Identities = 107/424 (25%), Positives = 194/424 (45%), Gaps = 10/424 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREG-------HFYYNISEVKVTE 329
PG K R T +AL+ Q G+ +EQ + +PDL+G E + YN + +K+
Sbjct: 30 PGIKARATQRALDYAVQAGMEMIEQMAKERKLPDLKGSESLEFVKIDYVNYNFTNIKINA 89
Query: 330 LQLTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLS 509
++ L F P + N+G+ + ++ F D G + GV + LS
Sbjct: 90 FSFPNTSLSFVPGVGIKALTNHGTTNISTDWEVKSPLFQDTGAADLFLSGVYFTGIVVLS 149
Query: 510 RDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
R+ G + C A VS +F G +Y + + + LN+ +CP++
Sbjct: 150 RNDFGHPILKLQDCYAQVSHADVSFSGELSVLYNSFAEPMEKPILKKLNEMLCPIIT-GE 208
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
+ LN+ L + V +D +DYSL+ P + + D+ +G FYPL + P +
Sbjct: 209 VEALNANLSMLEVLRKIDNYTLLDYSLISSPEITENYFDLNLKGVFYPLKSLRYP-PFPS 267
Query: 870 VEPQLQEE-ERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
V L E + M+Y+ SE+FF SA +YF AGA +L ++ + L L + G++
Sbjct: 268 VPFVLPERRDSMLYIGISEYFFKSASYAYFTAGAFSFTLTTKEISNHL--LHNSQAHGNM 325
Query: 1047 V--LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTM 1220
+ + ++ P +++ PP ++ P T+ + AS+ I P + SM
Sbjct: 326 LSRIAELYILSKPFMVQVMATEPPVISLLPGNFTLDIPASIMILTQPENSTAETIVSMDF 385
Query: 1221 DARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHER 1400
A + +A+ G+ L L L RFR+ +S ++ ++ + ++L GV+P+ + +
Sbjct: 386 VASTNVALAILGQRLICSLSLNRFRLSLPESNRGNIEVLRFENILSSILHFGVLPLANAK 445
Query: 1401 TWRG 1412
+G
Sbjct: 446 LQQG 449
>ref|XP_002687717.1| PREDICTED: bactericidal/permeability-increasing protein-like 2
(predicted)-like [Bos taurus].
Length = 508
Score = 154 bits (390), Expect = 1e-37
Identities = 107/424 (25%), Positives = 194/424 (45%), Gaps = 10/424 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREG-------HFYYNISEVKVTE 329
PG K R T +AL+ Q G+ +EQ + +PDL+G E + YN + +K+
Sbjct: 30 PGIKARATQRALDYAVQAGMEMIEQMAKERKLPDLKGSESLEFVKIDYVNYNFTNIKINA 89
Query: 330 LQLTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLS 509
++ L F P + N+G+ + ++ F D G + GV + LS
Sbjct: 90 FSFPNTSLSFVPGVGIKALTNHGTTNISTDWEVKSPLFQDTGAADLFLSGVYFTGIVVLS 149
Query: 510 RDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
R+ G + C A VS +F G +Y + + + LN+ +CP++
Sbjct: 150 RNDFGHPILKLQDCYAQVSHADVSFSGELSVLYNSFAEPMEKPILKKLNEMLCPIIT-GE 208
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
+ LN+ L + V +D +DYSL+ P + + D+ +G FYPL + P +
Sbjct: 209 VEALNANLSMLEVLRKIDNYTLLDYSLISSPEITENYFDLNLKGVFYPLKSLRYP-PFPS 267
Query: 870 VEPQLQEE-ERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
V L E + M+Y+ SE+FF SA +YF AGA +L ++ + L L + G++
Sbjct: 268 VPFVLPERRDSMLYIGISEYFFKSASYAYFTAGAFSFTLTTKEISNHL--LHNSQAHGNM 325
Query: 1047 V--LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTM 1220
+ + ++ P +++ PP ++ P T+ + AS+ I P + SM
Sbjct: 326 LSRIAELYILSKPFMVQVMATEPPVISLLPGNFTLDIPASIMILTQPENSTAETIVSMDF 385
Query: 1221 DARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHER 1400
A + +A+ G+ L L L RFR+ +S ++ ++ + ++L GV+P+ + +
Sbjct: 386 VASTNVALAILGQRLICSLSLNRFRLSLPESNRGNIEVLRFENILSSILHFGVLPLANAK 445
Query: 1401 TWRG 1412
+G
Sbjct: 446 LQQG 449
>ref|NP_001033763.1| lipopolysaccharide-binding protein precursor [Bos taurus].
Length = 481
Score = 132 bits (331), Expect = 1e-30
Identities = 104/427 (24%), Positives = 192/427 (44%), Gaps = 13/427 (3%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG--REGHFY---YNISEVKVTELQ 335
PG +RIT + LE V QE L L+ +L +T+PD G R HF Y + + +
Sbjct: 28 PGLVVRITDQGLEYVAQEELLALQSKLHKVTLPDFNGDVRIKHFGSVDYRFHSLNIQSCK 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGL----RFRRQLLYWFFYDGGYINASAEGVSIQTALQ 503
L S L P Q L I++ + + + R+++L DG + + +G++I L
Sbjct: 88 LLGSALKLLPNQGLHFSISDSFIQVTGDWKVRKRILR---LDGSF-DVKVKGITISVNLL 143
Query: 504 LSRDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYH 683
L +P+GR KV+ SC + + + G + I S R +L +IC ++
Sbjct: 144 LDSEPSGRPKVAVSSCSSHIRDVEVHISGDLGWLLNLFHNQIESRFRRVLESKICEIIED 203
Query: 684 AGMVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPN 863
+ L L T+PV +D L G+DYSL+ P A+ LD+ F+G + + P
Sbjct: 204 SVTSELQPYLQTLPVTTEIDHLAGLDYSLMGAPQATAQMLDVMFKGEIFSRDD---RFPV 260
Query: 864 RAVEPQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATY 1034
+ P + +E RMVY A S++ F++A Y +AG L ++ D +P D +
Sbjct: 261 AFLAPVMNLPEEHSRMVYFAISDYAFNTASLVYHKAGFLNFTITDDVIPPDSSIRQNTKS 320
Query: 1035 FGSIV-LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSS 1211
F + V ++ ++ L+L+ VI+ P P + + + ++ P + +
Sbjct: 321 FRAFVPRIARLYPNTNLELQGAVISAPCLNFSPGNLSTAAQMEIEAFVLLPNSVKEPVFR 380
Query: 1212 MTMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPML 1391
+++ +SA + + L+ + ++ +S + + L+A L P +
Sbjct: 381 LSVATNVSAMLTFNTSKITGFLEPGKIQVELKESKVGRFNVELLEALLNYYLLNNFYPKV 440
Query: 1392 HERTWRG 1412
+++ G
Sbjct: 441 NDKLAEG 447
>ref|XP_002692362.1| PREDICTED: lipopolysaccharide-binding protein-like [Bos taurus].
Length = 535
Score = 127 bits (320), Expect = 2e-29
Identities = 80/277 (28%), Positives = 135/277 (48%), Gaps = 6/277 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFY-----YNISEVKVTELQ 335
PG +RIT K LE Q G+ L+ +L TI +PDL G G + Y S +++
Sbjct: 28 PGFMVRITGKGLEYAHQYGVATLKNDLSTIKLPDLSGSYGIGWLGSVNYVFSGMRIHHFL 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L +S+L P Q + ++N + + ++ F G + S +G+S+ +L L +D
Sbjct: 88 LRNSQLSLHPRQGIKASLSNNHVSVSGNWKVKKSFITLHGTFDLSVDGMSVLVSLNLDKD 147
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
+GR VS C + + G + I + ++ +L Q+IC ++ +
Sbjct: 148 QSGRPTVSVTHCHNFIGHVSIEISGHISWILNLFHERIENNVKNILEQKICKMVKESAAS 207
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L T+PV +D++ GIDY L+ P + LD F+G F+ N S+P A
Sbjct: 208 RLEPYLRTLPVTSMIDQIAGIDYRLVGAPQVTFQGLDTPFKGEFFG-RNWNSSVPFDAPP 266
Query: 876 PQL-QEEERMVYVAFSEFFFDSAMESYFRAGALKLSL 983
L Q+ + M+Y A SE+ F++A Y +AG +K ++
Sbjct: 267 IMLPQKHDHMIYFAVSEYVFNTASRVYHQAGQMKFTI 303
>ref|XP_592903.2| PREDICTED: lipopolysaccharide-binding protein-like [Bos taurus].
Length = 535
Score = 127 bits (320), Expect = 2e-29
Identities = 80/277 (28%), Positives = 135/277 (48%), Gaps = 6/277 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFY-----YNISEVKVTELQ 335
PG +RIT K LE Q G+ L+ +L TI +PDL G G + Y S +++
Sbjct: 28 PGFMVRITGKGLEYAHQYGVATLKNDLSTIKLPDLSGSYGIGWLGSVNYVFSGMRIHHFL 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L +S+L P Q + ++N + + ++ F G + S +G+S+ +L L +D
Sbjct: 88 LRNSQLSLHPRQGIKASLSNNHVSVSGNWKVKKSFITLHGTFDLSVDGMSVLVSLNLDKD 147
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
+GR VS C + + G + I + ++ +L Q+IC ++ +
Sbjct: 148 QSGRPTVSVTHCHNFIGHVSIEISGHISWILNLFHERIENNVKNILEQKICKMVKESAAS 207
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L T+PV +D++ GIDY L+ P + LD F+G F+ N S+P A
Sbjct: 208 RLEPYLRTLPVTSMIDQIAGIDYRLVGAPQVTFQGLDTPFKGEFFG-RNWNSSVPFDAPP 266
Query: 876 PQL-QEEERMVYVAFSEFFFDSAMESYFRAGALKLSL 983
L Q+ + M+Y A SE+ F++A Y +AG +K ++
Sbjct: 267 IMLPQKHDHMIYFAVSEYVFNTASRVYHQAGQMKFTI 303
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,743,279
Number of extensions: 1504343
Number of successful extensions: 7159
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7123
Number of HSP's successfully gapped: 7
Length of query: 472
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 366
Effective length of database: 14,174,046
Effective search space: 5187700836
Effective search space used: 5187700836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003043
(1416 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543027.2| PREDICTED: similar to Phospholipid transfer pro... 770 0.0
Alignment gi|XP_534417.2| PREDICTED: similar to Bactericidal permeability... 167 3e-41
Alignment gi|XP_865991.1| PREDICTED: similar to Bactericidal permeability... 162 1e-39
Alignment gi|XP_531753.1| PREDICTED: similar to bactericidal/permeability... 158 1e-38
Alignment gi|XP_542993.2| PREDICTED: similar to lipopolysaccharide-bindin... 125 1e-28
>ref|XP_543027.2| PREDICTED: similar to Phospholipid transfer protein precursor (Lipid
transfer protein II) [Canis familiaris].
Length = 495
Score = 770 bits (1989), Expect = 0.0
Identities = 391/417 (93%), Positives = 408/417 (97%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 344
ELPGCKIR+TSKAL+LVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS
Sbjct: 18 ELPGCKIRVTSKALDLVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 77
Query: 345 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTG 524
SELHFQP QEL+LQI+N SLGLRFRRQLLYWFFYDGGYINASAEGVSI+TAL+LS DPTG
Sbjct: 78 SELHFQPGQELVLQISNASLGLRFRRQLLYWFFYDGGYINASAEGVSIRTALELSGDPTG 137
Query: 525 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 704
RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN
Sbjct: 138 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 197
Query: 705 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQL 884
SLLDTVPVR +VD+LVGIDYSLLKDPVASTSNLDM+FRGAF+PLAE NWSLPNRAVEPQL
Sbjct: 198 SLLDTVPVRSSVDDLVGIDYSLLKDPVASTSNLDMDFRGAFFPLAERNWSLPNRAVEPQL 257
Query: 885 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 1064
QEEERMVYVAFSEFFFDSAMESYFRAGAL+LSLVGDKVPHDLDMLLRATYFGSIVLLSPA
Sbjct: 258 QEEERMVYVAFSEFFFDSAMESYFRAGALQLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 317
Query: 1065 VIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 1244
VIDSPLKLELRV+APPRCTIKP+GTT+SVTASVTIALVP QPEVQLSSMTMDARL+AKM
Sbjct: 318 VIDSPLKLELRVLAPPRCTIKPSGTTVSVTASVTIALVPSDQPEVQLSSMTMDARLNAKM 377
Query: 1245 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAP +TMLQIGVMPML+ER WRGV
Sbjct: 378 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPLKTMLQIGVMPMLNERMWRGV 434
>ref|XP_534417.2| PREDICTED: similar to Bactericidal permeability-increasing protein
precursor (BPI) (CAP 57) isoform 1 [Canis familiaris].
Length = 485
Score = 167 bits (422), Expect = 3e-41
Identities = 119/426 (27%), Positives = 202/426 (47%), Gaps = 12/426 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG-----REGHFYYNISEVKVTELQ 335
PG RIT K L+ Q+G+ L++ELE I IP G G +Y+ + + Q
Sbjct: 31 PGVVARITQKGLDYACQQGVAVLQKELEKIKIPTFSGSFKVKHLGKGHYSFYSMVIRGFQ 90
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L SS++ P + L L I N ++ + + + F G + S E +SI L +S D
Sbjct: 91 LPSSQIKLVPNKGLDLSIRNANIKISGKWKARKNFIKTSGNFDLSVESISISAGLNMSFD 150
Query: 516 PT-GRIKVSNVSCQASVS--RMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHA 686
PT G + + SC + R+H + GG + + I S +R +N +IC V+ +
Sbjct: 151 PTSGHLTIICSSCNNYIDSVRVHIS-GGRLGWLIQLFHKKIESSIRKTMNNKICQVVSSS 209
Query: 687 GMVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGN---WSL 857
L S L T+PV +D + GI YSL+ P A+ NLD +G F+ LA ++
Sbjct: 210 VSSRLQSYLKTLPVTYKIDRIAGISYSLVAPPTATADNLDGHLKGEFFSLAHPRSPPFTP 269
Query: 858 PNRAVEPQLQEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYF 1037
P A+ P + + MVY+ S++FF++A Y AGAL +++ D +P L +
Sbjct: 270 PAMALPP---DHDHMVYLGISDYFFNTAGLVYQEAGALNMTITDDMIPKKSKFRLTTDFL 326
Query: 1038 GSIV-LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSM 1214
G+++ ++ + ++ + +PP T++PAG + T V P L +
Sbjct: 327 GTLIPQVAEMFPNMTVQFNVWASSPPHLTMRPAGLIFTPTLDTQAFAVLPNSSLAPLFVL 386
Query: 1215 TMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLH 1394
+ LS +++ R L QL L + + S + S ++ LQ+ ++ V+P ++
Sbjct: 387 GLSTNLSMEVSARPDRLVGQLSLDKLLLELKHSDVGSFSVAVLQSIMNYVVPTAVLPKVN 446
Query: 1395 ERTWRG 1412
ER G
Sbjct: 447 ERLQEG 452
>ref|XP_865991.1| PREDICTED: similar to Bactericidal permeability-increasing protein
precursor (BPI) (CAP 57) isoform 3 [Canis familiaris].
Length = 485
Score = 162 bits (409), Expect = 1e-39
Identities = 116/420 (27%), Positives = 199/420 (47%), Gaps = 12/420 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG-----REGHFYYNISEVKVTELQ 335
PG RIT K L+ Q+G+ L++ELE I IP G G +Y+ + + Q
Sbjct: 31 PGVVARITQKGLDYACQQGVAVLQKELEKIKIPTFSGSFKVKHLGKGHYSFYSMVIRGFQ 90
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L SS++ P + L L I N ++ + + + F G + S E +SI L +S D
Sbjct: 91 LPSSQIKLVPNKGLDLSIRNANIKISGKWKARKNFIKTSGNFDLSVESISISAGLNMSFD 150
Query: 516 PT-GRIKVSNVSCQASVS--RMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHA 686
PT G + + SC + R+H + GG + + I S +R +N +IC V+ +
Sbjct: 151 PTSGHLTIICSSCNNYIDSVRVHIS-GGRLGWLIQLFHKKIESSIRKTMNNKICQVVSSS 209
Query: 687 GMVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGN---WSL 857
L S L T+PV +D + GI YSL+ P A+ NLD +G F+ LA ++
Sbjct: 210 VSSRLQSYLKTLPVTYKIDRIAGISYSLVAPPTATADNLDGHLKGEFFSLAHPRSPPFTP 269
Query: 858 PNRAVEPQLQEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYF 1037
P A+ P + + MVY+ S++FF++A Y AGAL +++ D +P L +
Sbjct: 270 PAMALPP---DHDHMVYLGISDYFFNTAGLVYQEAGALNMTITDDMIPKKSKFRLTTDFL 326
Query: 1038 GSIV-LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSM 1214
G+++ ++ + ++ + +PP T++PAG + T V P L +
Sbjct: 327 GTLIPQVAEMFPNMTVQFNVWASSPPHLTMRPAGLIFTPTLDTQAFAVLPNSSLAPLFVL 386
Query: 1215 TMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLH 1394
+ LS +++ R L QL L + + S + S ++ LQ+ ++ V+P ++
Sbjct: 387 GLSTNLSMEVSARPDRLVGQLSLDKLLLELKHSDVGSFSVAVLQSIMNYVVPTAVLPKVN 446
>ref|XP_531753.1| PREDICTED: similar to bactericidal/permeability-increasing
protein-like 2 [Canis familiaris].
Length = 507
Score = 158 bits (399), Expect = 1e-38
Identities = 108/425 (25%), Positives = 198/425 (46%), Gaps = 10/425 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREG-------HFYYNISEVKVTE 329
PG K R+T +AL+ Q G+ +EQ ++ IPDL+G E + YN S +K+
Sbjct: 28 PGIKARVTQRALDYGIQAGMEMIEQMIKEKNIPDLKGSESLEFLKVDYVNYNFSNIKINV 87
Query: 330 LQLTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLS 509
++ L F P + N+G+ + + F D G + GV + LS
Sbjct: 88 FSFPNTSLAFVPGVGIKALTNHGTANISTNWDVKSPLFQDTGEADLFLSGVYFTGIIVLS 147
Query: 510 RDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
++ G + C A VS H +F G +Y + + + LN+ +CP++ +
Sbjct: 148 QNDFGHPILKLQDCYAQVSHAHVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPIIT-SE 206
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
+ LN+ L + V +D +DYSL+ P + + +++ +G FYPL + P
Sbjct: 207 VEALNANLSMLEVLTKIDNYTLLDYSLISSPEITENYIELNLKGVFYPL-DNLTDPPFLP 265
Query: 870 VEPQLQEE-ERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
V L E + M+YV SEFFF SA +YF AGA ++L ++ + L + + G++
Sbjct: 266 VPFALPERSDSMLYVGISEFFFKSASFAYFIAGAFNVTLSMKEISNHL--VQNSQGLGNM 323
Query: 1047 V--LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTM 1220
+ + ++ P + + PP ++ P T+ + AS+ I P + SM
Sbjct: 324 LSRIAEIYILSQPFMVRVMATEPPVISLLPGNFTLDIPASIVILTQPENSTAEAIVSMDF 383
Query: 1221 DARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHER 1400
A S + + G+ L L L RFR+ +S+ ++ ++ + ++L G++P+ + +
Sbjct: 384 VASTSVGLVILGQRLVCSLSLNRFRLSLPESSRSNIEVLRFENILSSILHFGILPLANAK 443
Query: 1401 TWRGV 1415
+G+
Sbjct: 444 LQQGI 448
>ref|XP_542993.2| PREDICTED: similar to lipopolysaccharide-binding protein precursor
[Canis familiaris].
Length = 406
Score = 125 bits (314), Expect = 1e-28
Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 9/367 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGRE-----GHFYYNISEVKVTELQ 335
PG +RIT K LE V +EGL L+++L +IT+PD G G +Y+ + V +
Sbjct: 28 PGLVVRITDKGLEYVAKEGLVALQKKLLSITLPDFAGDFKIKPIGRGHYDFHSLSVHSCE 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L S L P Q L L I++ + ++ + F G + +G++I L L R+
Sbjct: 88 LRGSALTPLPSQGLSLTISDSFIRVQGEWKARKAFVKLQGSFDVQVKGITISVNLVLGRE 147
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
P+GR V+ SC + + + G + I S +L +IC +L +
Sbjct: 148 PSGRPTVAASSCSSHIQDVEVDISGDLGWLMNLFHNQIESKFCRVLESKICEMLQKSVTS 207
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L T+PV +D GIDYSL++ P + LD+ F+G + + P +
Sbjct: 208 DLQPYLQTLPVTTQIDSFAGIDYSLVEAPRVTAQMLDVMFKGEIF---NRDHYSPVTFLA 264
Query: 876 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
P + +E RMVY A S++ F++A Y G L ++ D VP ++ L F +
Sbjct: 265 PVMSLPEEHNRMVYFAISDYVFNTASLVYHETGYLNFTITDDMVPPGSNIRLTTKSFRPL 324
Query: 1047 V-LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMD 1223
V L+ + L+L+ + + P P +++ + ++ P + +++
Sbjct: 325 VPKLARLYPNMNLELQGTMASAPFLNFSPGNLSLAPLMEIEAFVLLPSSSREPVFQLSVA 384
Query: 1224 ARLSAKM 1244
+SA +
Sbjct: 385 TNISATL 391
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,096,361
Number of extensions: 1550984
Number of successful extensions: 7455
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7433
Number of HSP's successfully gapped: 5
Length of query: 472
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 366
Effective length of database: 15,340,888
Effective search space: 5614765008
Effective search space used: 5614765008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003043
(1416 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006218.1| phospholipid transfer protein isoform a precurs... 764 0.0
Alignment gi|NP_872617.1| phospholipid transfer protein isoform b precurs... 643 0.0
Alignment gi|NP_001229850.1| phospholipid transfer protein isoform d [Hom... 633 0.0
Alignment gi|NP_001229849.1| phospholipid transfer protein isoform c prec... 499 e-141
Alignment gi|NP_777592.1| bactericidal/permeability-increasing protein-li... 154 3e-37
Alignment gi|NP_001716.2| bactericidal permeability-increasing protein pr... 151 2e-36
Alignment gi|NP_004130.2| lipopolysaccharide-binding protein precursor [H... 129 5e-30
Alignment gi|NP_000069.2| cholesteryl ester transfer protein precursor [H... 90 4e-18
>ref|NP_006218.1| phospholipid transfer protein isoform a precursor [Homo sapiens].
Length = 493
Score = 764 bits (1973), Expect = 0.0
Identities = 387/417 (92%), Positives = 403/417 (96%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 344
E PGCKIR+TSKALELVKQEGLRFLEQELETITIPDLRG+EGHFYYNISEVKVTELQLTS
Sbjct: 18 EFPGCKIRVTSKALELVKQEGLRFLEQELETITIPDLRGKEGHFYYNISEVKVTELQLTS 77
Query: 345 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTG 524
SEL FQP+QELMLQI N SLGLRFRRQLLYWFFYDGGYINASAEGVSI+T L+LSRDP G
Sbjct: 78 SELDFQPQQELMLQITNASLGLRFRRQLLYWFFYDGGYINASAEGVSIRTGLELSRDPAG 137
Query: 525 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 704
R+KVSNVSCQASVSRMHAAFGGTFKKVY+FLSTFITSGMRFLLNQQICPVLYHAG VLLN
Sbjct: 138 RMKVSNVSCQASVSRMHAAFGGTFKKVYDFLSTFITSGMRFLLNQQICPVLYHAGTVLLN 197
Query: 705 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQL 884
SLLDTVPVR +VDELVGIDYSL+KDPVASTSNLDM+FRGAF+PL E NWSLPNRAVEPQL
Sbjct: 198 SLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLDMDFRGAFFPLTERNWSLPNRAVEPQL 257
Query: 885 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 1064
QEEERMVYVAFSEFFFDSAMESYFRAGAL+L LVGDKVPHDLDMLLRATYFGSIVLLSPA
Sbjct: 258 QEEERMVYVAFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDMLLRATYFGSIVLLSPA 317
Query: 1065 VIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 1244
VIDSPLKLELRV+APPRCTIKP+GTTISVTASVTIALVPP QPEVQLSSMTMDARLSAKM
Sbjct: 318 VIDSPLKLELRVLAPPRCTIKPSGTTISVTASVTIALVPPDQPEVQLSSMTMDARLSAKM 377
Query: 1245 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
ALRGKALRTQLDLRRFRIYSN SALESLALIPLQAP +TMLQIGVMPML+ERTWRGV
Sbjct: 378 ALRGKALRTQLDLRRFRIYSNHSALESLALIPLQAPLKTMLQIGVMPMLNERTWRGV 434
>ref|NP_872617.1| phospholipid transfer protein isoform b precursor [Homo sapiens].
Length = 441
Score = 643 bits (1658), Expect = 0.0
Identities = 339/417 (81%), Positives = 352/417 (84%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 344
E PGCKIR+TSKALELVKQEGLRFLEQELETITIPDLRG+EGHFYYNISEVKVTELQLTS
Sbjct: 18 EFPGCKIRVTSKALELVKQEGLRFLEQELETITIPDLRGKEGHFYYNISEVKVTELQLTS 77
Query: 345 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTG 524
SEL FQP+QELMLQI N SLGLRFRRQLLYW
Sbjct: 78 SELDFQPQQELMLQITNASLGLRFRRQLLYW----------------------------- 108
Query: 525 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 704
F KVY+FLSTFITSGMRFLLNQQICPVLYHAG VLLN
Sbjct: 109 -----------------------FLKVYDFLSTFITSGMRFLLNQQICPVLYHAGTVLLN 145
Query: 705 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQL 884
SLLDTVPVR +VDELVGIDYSL+KDPVASTSNLDM+FRGAF+PL E NWSLPNRAVEPQL
Sbjct: 146 SLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLDMDFRGAFFPLTERNWSLPNRAVEPQL 205
Query: 885 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 1064
QEEERMVYVAFSEFFFDSAMESYFRAGAL+L LVGDKVPHDLDMLLRATYFGSIVLLSPA
Sbjct: 206 QEEERMVYVAFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDMLLRATYFGSIVLLSPA 265
Query: 1065 VIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 1244
VIDSPLKLELRV+APPRCTIKP+GTTISVTASVTIALVPP QPEVQLSSMTMDARLSAKM
Sbjct: 266 VIDSPLKLELRVLAPPRCTIKPSGTTISVTASVTIALVPPDQPEVQLSSMTMDARLSAKM 325
Query: 1245 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
ALRGKALRTQLDLRRFRIYSN SALESLALIPLQAP +TMLQIGVMPML+ERTWRGV
Sbjct: 326 ALRGKALRTQLDLRRFRIYSNHSALESLALIPLQAPLKTMLQIGVMPMLNERTWRGV 382
>ref|NP_001229850.1| phospholipid transfer protein isoform d [Homo sapiens].
Length = 405
Score = 633 bits (1633), Expect = 0.0
Identities = 321/346 (92%), Positives = 334/346 (96%)
Frame = +3
Query: 378 MLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTGRIKVSNVSCQA 557
MLQI N SLGLRFRRQLLYWFFYDGGYINASAEGVSI+T L+LSRDP GR+KVSNVSCQA
Sbjct: 1 MLQITNASLGLRFRRQLLYWFFYDGGYINASAEGVSIRTGLELSRDPAGRMKVSNVSCQA 60
Query: 558 SVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLNSLLDTVPVRGA 737
SVSRMHAAFGGTFKKVY+FLSTFITSGMRFLLNQQICPVLYHAG VLLNSLLDTVPVR +
Sbjct: 61 SVSRMHAAFGGTFKKVYDFLSTFITSGMRFLLNQQICPVLYHAGTVLLNSLLDTVPVRSS 120
Query: 738 VDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQLQEEERMVYVAF 917
VDELVGIDYSL+KDPVASTSNLDM+FRGAF+PL E NWSLPNRAVEPQLQEEERMVYVAF
Sbjct: 121 VDELVGIDYSLMKDPVASTSNLDMDFRGAFFPLTERNWSLPNRAVEPQLQEEERMVYVAF 180
Query: 918 SEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPAVIDSPLKLELR 1097
SEFFFDSAMESYFRAGAL+L LVGDKVPHDLDMLLRATYFGSIVLLSPAVIDSPLKLELR
Sbjct: 181 SEFFFDSAMESYFRAGALQLLLVGDKVPHDLDMLLRATYFGSIVLLSPAVIDSPLKLELR 240
Query: 1098 VIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKMALRGKALRTQL 1277
V+APPRCTIKP+GTTISVTASVTIALVPP QPEVQLSSMTMDARLSAKMALRGKALRTQL
Sbjct: 241 VLAPPRCTIKPSGTTISVTASVTIALVPPDQPEVQLSSMTMDARLSAKMALRGKALRTQL 300
Query: 1278 DLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
DLRRFRIYSN SALESLALIPLQAP +TMLQIGVMPML+ERTWRGV
Sbjct: 301 DLRRFRIYSNHSALESLALIPLQAPLKTMLQIGVMPMLNERTWRGV 346
>ref|NP_001229849.1| phospholipid transfer protein isoform c precursor [Homo sapiens].
Length = 398
Score = 499 bits (1284), Expect = e-141
Identities = 254/273 (93%), Positives = 265/273 (97%)
Frame = +3
Query: 597 KKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLNSLLDTVPVRGAVDELVGIDYSLLK 776
+KVY+FLSTFITSGMRFLLNQQICPVLYHAG VLLNSLLDTVPVR +VDELVGIDYSL+K
Sbjct: 67 EKVYDFLSTFITSGMRFLLNQQICPVLYHAGTVLLNSLLDTVPVRSSVDELVGIDYSLMK 126
Query: 777 DPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQLQEEERMVYVAFSEFFFDSAMESYF 956
DPVASTSNLDM+FRGAF+PL E NWSLPNRAVEPQLQEEERMVYVAFSEFFFDSAMESYF
Sbjct: 127 DPVASTSNLDMDFRGAFFPLTERNWSLPNRAVEPQLQEEERMVYVAFSEFFFDSAMESYF 186
Query: 957 RAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPAVIDSPLKLELRVIAPPRCTIKPAG 1136
RAGAL+L LVGDKVPHDLDMLLRATYFGSIVLLSPAVIDSPLKLELRV+APPRCTIKP+G
Sbjct: 187 RAGALQLLLVGDKVPHDLDMLLRATYFGSIVLLSPAVIDSPLKLELRVLAPPRCTIKPSG 246
Query: 1137 TTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKMALRGKALRTQLDLRRFRIYSNQSA 1316
TTISVTASVTIALVPP QPEVQLSSMTMDARLSAKMALRGKALRTQLDLRRFRIYSN SA
Sbjct: 247 TTISVTASVTIALVPPDQPEVQLSSMTMDARLSAKMALRGKALRTQLDLRRFRIYSNHSA 306
Query: 1317 LESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
LESLALIPLQAP +TMLQIGVMPML+ERTWRGV
Sbjct: 307 LESLALIPLQAPLKTMLQIGVMPMLNERTWRGV 339
Score = 100 bits (249), Expect = 3e-21
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISE 314
E PGCKIR+TSKALELVKQEGLRFLEQELETITIPDLRG+EGHFYYNISE
Sbjct: 18 EFPGCKIRVTSKALELVKQEGLRFLEQELETITIPDLRGKEGHFYYNISE 67
>ref|NP_777592.1| bactericidal/permeability-increasing protein-like 2 precursor [Homo
sapiens].
Length = 507
Score = 154 bits (388), Expect = 3e-37
Identities = 106/424 (25%), Positives = 195/424 (45%), Gaps = 10/424 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREG-------HFYYNISEVKVTE 329
PG K RIT +AL+ Q G++ +EQ L+ +PDL G E + YN S +K++
Sbjct: 28 PGIKARITQRALDYGVQAGMKMIEQMLKEKKLPDLSGSESLEFLKVDYVNYNFSNIKISA 87
Query: 330 LQLTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLS 509
++ L F P + N+G+ + F D G + GV + L+
Sbjct: 88 FSFPNTSLAFVPGVGIKALTNHGTANISTDWGFESPLFQDTGGADLFLSGVYFTGIIILT 147
Query: 510 RDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
R+ G + C A +S H +F G +Y + + + LN+ +CP++ +
Sbjct: 148 RNDFGHPTLKLQDCYAQLSHAHVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPIIA-SE 206
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
+ LN+ L T+ V +D +DYSL+ P + + LD+ +G FYPL E P
Sbjct: 207 VKALNANLSTLEVLTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPL-ENLTDPPFSP 265
Query: 870 VEPQLQEEER-MVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
V L E M+Y+ +E+FF SA ++F AG ++L +++ + + + G++
Sbjct: 266 VPFVLPERSNSMLYIGIAEYFFKSASFAHFTAGVFNVTLSTEEISNHF--VQNSQGLGNV 323
Query: 1047 V--LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTM 1220
+ + ++ P + + PP ++P T+ + AS+ + P + SM
Sbjct: 324 LSRIAEIYILSQPFMVRIMATEPPIINLQPGNFTLDIPASIMMLTQPKNSTVETIVSMDF 383
Query: 1221 DARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHER 1400
A S + + G+ L L L RFR+ +S ++ ++ + ++L GV+P+ + +
Sbjct: 384 VASTSVGLVILGQRLVCSLSLNRFRLALPESNRSNIEVLRFENILSSILHFGVLPLANAK 443
Query: 1401 TWRG 1412
+G
Sbjct: 444 LQQG 447
>ref|NP_001716.2| bactericidal permeability-increasing protein precursor [Homo
sapiens].
Length = 487
Score = 151 bits (381), Expect = 2e-36
Identities = 117/429 (27%), Positives = 202/429 (47%), Gaps = 15/429 (3%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG-----REGHFYYNISEVKVTELQ 335
PG +RI+ K L+ Q+G L++EL+ I IPD G +Y+ + + E Q
Sbjct: 34 PGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQ 93
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L SS++ P L I+N ++ + + + F G + S EG+SI L+L +
Sbjct: 94 LPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSN 153
Query: 516 PT-GRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTF---ITSGMRFLLNQQICPVLYH 683
PT G+ ++ SC + ++ +H + KV + F I S +R +N Q+C + +
Sbjct: 154 PTSGKPTITCSSCSSHINSVHVHISKS--KVGWLIQLFHKKIESALRNKMNSQVCEKVTN 211
Query: 684 AGMVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPN 863
+ L T+PV +D + GI+Y L+ P + LD++ +G FY +E + + P
Sbjct: 212 SVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFY--SENHHNPPP 269
Query: 864 RAVEPQLQE----EERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRAT 1031
A P + E +RMVY+ S++FF++A Y AG LK++L D +P + L
Sbjct: 270 FA--PPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTK 327
Query: 1032 YFGSIVLLSPAVIDSPLKLELRVIA--PPRCTIKPAGTTISVTASVTIALVPPGQPEVQL 1205
+FG+ L A +K+++ V A PP +++P G T V V P L
Sbjct: 328 FFGTF-LPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSSLASL 386
Query: 1206 SSMTMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMP 1385
+ M S +++ L +L L R + S + + LQ ++ I V+P
Sbjct: 387 FLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLP 446
Query: 1386 MLHERTWRG 1412
++E+ +G
Sbjct: 447 RVNEKLQKG 455
>ref|NP_004130.2| lipopolysaccharide-binding protein precursor [Homo sapiens].
Length = 481
Score = 129 bits (325), Expect = 5e-30
Identities = 96/364 (26%), Positives = 163/364 (44%), Gaps = 6/364 (1%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG-----REGHFYYNISEVKVTELQ 335
PG RIT K L+ QEGL L+ EL IT+PD G G Y + + +
Sbjct: 28 PGLVARITDKGLQYAAQEGLLALQSELLRITLPDFTGDLRIPHVGRGRYEFHSLNIHSCE 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L S L P Q L L I++ S+ ++ R ++ FF G + S +G+SI L L +
Sbjct: 88 LLHSALRPVPGQGLSLSISDSSIRVQGRWKVRKSFFKLQGSFDVSVKGISISVNLLLGSE 147
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
+GR V+ SC + ++ + G + I S + +L +IC ++ +
Sbjct: 148 SSGRPTVTASSCSSDIADVEVDMSGDLGWLLNLFHNQIESKFQKVLESRICEMIQKSVSS 207
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L T+PV +D IDYSL++ P A+ L++ F+G + + AV
Sbjct: 208 DLQPYLQTLPVTTEIDSFADIDYSLVEAPRATAQMLEVMFKGEIFHRNHRSPVTLLAAVM 267
Query: 876 PQLQEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIV-L 1052
+E +MVY A S++ F++A Y G L S+ D +P D ++ L F V
Sbjct: 268 SLPEEHNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFVPR 327
Query: 1053 LSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARL 1232
L+ + L+L+ V + P P ++ + ++ P + + +++ +
Sbjct: 328 LARLYPNMNLELQGSVPSAPLLNFSPGNLSVDPYMEIDAFVLLPSSSKEPVFRLSVATNV 387
Query: 1233 SAKM 1244
SA +
Sbjct: 388 SATL 391
>ref|NP_000069.2| cholesteryl ester transfer protein precursor [Homo sapiens].
Length = 493
Score = 90.1 bits (222), Expect = 4e-18
Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 14/288 (4%)
Frame = +3
Query: 174 GCKIRITSKALELVKQEGLRFLEQELETITIPDLRGRE-----GHFYYNISEVKVTELQL 338
G RIT AL ++ E + ++ + + PD+ G + G Y + ++++ L +
Sbjct: 27 GIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSI 86
Query: 339 TSSELHFQPEQELMLQINNGSL----GLRFRRQLLYWFFYDGGYINASAEGVSIQTALQL 506
SS++ + + + I N S+ L++ +W D + +Q QL
Sbjct: 87 ASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQL 146
Query: 507 SRDPTGRIKVSNVSCQASVSRMHAAFGGTFKK--VYEFLSTFITSGMRFLLNQQICPVLY 680
+ D +GR++ C S ++ G + + + + FI+ ++ +L QIC +
Sbjct: 147 TCD-SGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEIN 205
Query: 681 HAGMVLLNSLLDTVPVRGAV---DELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNW 851
V+ N + D V R A D +G+D SL DPV + S L+ +G F +
Sbjct: 206 ----VISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFI-YKNVSE 260
Query: 852 SLPNRAVEPQLQEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDK 995
LP P L + RM+Y FSE F S + F+ G L LSL+GD+
Sbjct: 261 DLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDE 308
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,787,662
Number of extensions: 1503340
Number of successful extensions: 6812
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6783
Number of HSP's successfully gapped: 10
Length of query: 472
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 366
Effective length of database: 14,802,980
Effective search space: 5417890680
Effective search space used: 5417890680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003043
(1416 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035255.1| phospholipid transfer protein precursor [Mus mu... 683 0.0
Alignment gi|NP_032515.2| lipopolysaccharide-binding protein precursor [M... 137 2e-32
Alignment gi|NP_808440.2| bactericidal/permeability-increasing protein-li... 136 5e-32
Alignment gi|NP_808518.1| bactericidal permeability-increasing protein [M... 99 8e-21
>ref|NP_035255.1| phospholipid transfer protein precursor [Mus musculus].
Length = 493
Score = 683 bits (1763), Expect = 0.0
Identities = 338/417 (81%), Positives = 381/417 (91%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 344
ELPGCKIR+TS AL+LVKQEGLRFLEQELETITIPD+ G +GHFYYNIS+V+VT+L L S
Sbjct: 18 ELPGCKIRVTSAALDLVKQEGLRFLEQELETITIPDVYGAKGHFYYNISDVRVTQLHLIS 77
Query: 345 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTG 524
SELHFQP+Q+L+L I+N SLGL FRRQLLYWF YDGGYINASAEGVSI+T LQLS+D +G
Sbjct: 78 SELHFQPDQDLLLNISNASLGLHFRRQLLYWFLYDGGYINASAEGVSIRTGLQLSQDSSG 137
Query: 525 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 704
RIKVSNVSC+ASVS+M+ AFGGTF+++Y F STFITSGMRFLLNQQICPVLYHAG VLLN
Sbjct: 138 RIKVSNVSCEASVSKMNMAFGGTFRRMYNFFSTFITSGMRFLLNQQICPVLYHAGTVLLN 197
Query: 705 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQL 884
SLLDTVPVR +VD+LVGIDYSLLKDPV S NLDMEFRGAF+PL E NWSLPNRAVEPQL
Sbjct: 198 SLLDTVPVRSSVDDLVGIDYSLLKDPVVSNGNLDMEFRGAFFPLKEDNWSLPNRAVEPQL 257
Query: 885 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 1064
+++ERMVYVAFSEFFFDSAMESYF+AGAL+L+LVGDKVP DLDMLLRATYFGSIVLLSP
Sbjct: 258 EDDERMVYVAFSEFFFDSAMESYFQAGALQLTLVGDKVPSDLDMLLRATYFGSIVLLSPT 317
Query: 1065 VIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 1244
VI+SPLKL+L +PPRCTIKP+GTTIS+TASVTI L PP PEV+LS M M+ RLSAK+
Sbjct: 318 VINSPLKLKLEATSPPRCTIKPSGTTISITASVTITLAPPMLPEVELSKMIMEGRLSAKL 377
Query: 1245 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
LRGKALR +LDLRRF+IYSNQSALESLALIPLQAP +T+LQIGVMP+L+ERTWRGV
Sbjct: 378 TLRGKALRVKLDLRRFQIYSNQSALESLALIPLQAPLKTLLQIGVMPLLNERTWRGV 434
>ref|NP_032515.2| lipopolysaccharide-binding protein precursor [Mus musculus].
Length = 481
Score = 137 bits (346), Expect = 2e-32
Identities = 97/338 (28%), Positives = 157/338 (46%), Gaps = 12/338 (3%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG-----REGHFYYNISEVKVTELQ 335
PG RIT K L +EGL L++EL IT+PD G G Y +++ +
Sbjct: 28 PGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNCE 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L S L P Q L L I++ S+G+R + ++ F G + +GV+I L L D
Sbjct: 88 LRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMD 147
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
P+GR VS C + + + G + I S ++ +L ++C ++ +
Sbjct: 148 PSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTS 207
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L T+PV +D ++GIDYSL+ P A LD+ F+G + N P
Sbjct: 208 DLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIF---NRNHRSPVATPT 264
Query: 876 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
P + ++ ++MVY A S++ F+ A Y +AG L S+ D +PHD + L F
Sbjct: 265 PTMSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRP- 323
Query: 1047 VLLSPAVIDS--PLKLEL--RVIAPPRCTIKPAGTTIS 1148
+P + +KLEL V++ P + P +++
Sbjct: 324 --FTPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLA 359
>ref|NP_808440.2| bactericidal/permeability-increasing protein-like 2 [Mus musculus].
Length = 507
Score = 136 bits (342), Expect = 5e-32
Identities = 103/424 (24%), Positives = 187/424 (44%), Gaps = 10/424 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREG-------HFYYNISEVKVTE 329
PG RIT +AL+ Q G++ LEQ + I IPDL G E + YN S +K+
Sbjct: 28 PGITARITQRALDYGLQVGMKVLEQLAKEIVIPDLNGSESLKFLKIDYVKYNFSNIKINA 87
Query: 330 LQLTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLS 509
++ L F P + N+G+ + + F D G N G+ + +
Sbjct: 88 FSFPNTSLAFVPGVGIRALSNHGTANISTNWSVKAPLFRDSGAANLFLSGIYFTGIVAFT 147
Query: 510 RDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
R+ G + C VS +F G+ +Y + + + LN+ +CP+ +
Sbjct: 148 RNDFGYPALELQDCHVQVSHARVSFFGSLSALYNSFAEPMEKPILKNLNEMLCPIAI-SQ 206
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
+ N + + V +D +D SL+ P + ++LD +GAFYPL E P
Sbjct: 207 VEQFNVNISALEVLTKIDNYTVLDCSLISPPEITENHLDFNLKGAFYPL-ESLVDPPFTP 265
Query: 870 VEPQLQE-EERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
L E + M+Y+ SE+FF SA +++ +GAL +L ++ + ++ FGS+
Sbjct: 266 APFHLPESRDSMLYIGISEYFFKSASFAHYVSGALGTTLSTREISNYFSQNVQG--FGSV 323
Query: 1047 V--LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTM 1220
+ + V+ P L++ PP ++ ++ A+V + + SM
Sbjct: 324 LSKIAEIYVLSQPFILQMMATGPPMVNLQRNNFSLEFPAAVIMLTQLDNSTIQPIVSMDF 383
Query: 1221 DARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHER 1400
A S +A+ G+ L L L RFR+ +++ ++ + ++L GV+P+ + +
Sbjct: 384 VASTSVGLAILGQKLICSLSLNRFRLSLPENSQRDAKVVRFENILSSILHFGVLPLANTK 443
Query: 1401 TWRG 1412
+G
Sbjct: 444 LQQG 447
>ref|NP_808518.1| bactericidal permeability-increasing protein [Mus musculus].
Length = 486
Score = 99.0 bits (245), Expect = 8e-21
Identities = 92/428 (21%), Positives = 188/428 (43%), Gaps = 14/428 (3%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRG-----REGHFYYNISEVKVTELQ 335
PG I+ K L+ Q+G+ L++EL+ I++PD G G Y + V
Sbjct: 30 PGFVAMISQKGLDFACQQGVVELQKELQAISVPDFSGVFKIKHLGKGSYEFYSMAVDGFH 89
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
+ + ++ P L + I + S+ + + F GG S +GVSI T L L D
Sbjct: 90 IPNPKIEMLPSDGLRVFIKDASIKINGKWMSRKNFLKAGGNFELSIQGVSISTDLILGSD 149
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKK-VYEFLSTFITSGMRFLLNQQICPVLYHAGM 692
+G I +C + + +H G+ + I + ++ ++ ++IC ++ +
Sbjct: 150 SSGHITTICSNCDSHIDSVHIKISGSMLGWLIRLFHRKIETSLKNIIYKKICKIVRDSVS 209
Query: 693 VLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAV 872
L L T+ V VD++ +DYSLL + L+ + +G F+ + + V
Sbjct: 210 SKLQPYLKTLSVITRVDDVTSVDYSLLAPLTTTNQFLEGQLKGEFFWRGHRDPLPIHPPV 269
Query: 873 EPQLQEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHD----LDMLLRATYFG 1040
+ MV + S++FF++ + +Y ++G LK++L G + ++ L+ T+
Sbjct: 270 MRFVPNGAYMVCMGISDYFFNTEVLAYQQSGTLKMTLGGQLLSNNGRFQLNTDFLRTFLP 329
Query: 1041 SIVLLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTM 1220
+ + P++ ++L + P +I+P+G + + +V P V L + M
Sbjct: 330 KVAKMFPSM---GVQLLISAPVPVHLSIQPSGLSFNPKLETQAFVVLPNASLVPLFVLGM 386
Query: 1221 DAR-LSAKMALRGKALRTQLDLR---RFRIYSNQSALESLALIPLQAPSETMLQIGVMPM 1388
R +A + + + R +++ R+ + +S + L+ ++ V+P
Sbjct: 387 VRRKTNASLEVDAEENRLVGEMKLGSRWLLELKESKFGPFKVEYLEDVINYLVSTLVLPK 446
Query: 1389 LHERTWRG 1412
++ER RG
Sbjct: 447 INERLRRG 454
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,143,178
Number of extensions: 1233561
Number of successful extensions: 5393
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5351
Number of HSP's successfully gapped: 4
Length of query: 472
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 367
Effective length of database: 12,463,779
Effective search space: 4574206893
Effective search space used: 4574206893
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003043
(1416 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999448.1| phospholipid transfer protein [Sus scrofa]. 803 0.0
Alignment gi|NP_001152779.1| bactericidal permeability-increasing protein... 170 2e-42
Alignment gi|XP_003126122.1| PREDICTED: bactericidal/permeability-increas... 139 3e-33
Alignment gi|XP_003360027.1| PREDICTED: lipopolysaccharide-binding protei... 121 1e-27
Alignment gi|NP_001121907.1| lipopolysaccharide-binding protein [Sus scro... 120 2e-27
>ref|NP_999448.1| phospholipid transfer protein [Sus scrofa].
Length = 496
Score = 803 bits (2074), Expect = 0.0
Identities = 410/417 (98%), Positives = 414/417 (99%)
Frame = +3
Query: 165 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 344
ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS
Sbjct: 18 ELPGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREGHFYYNISEVKVTELQLTS 77
Query: 345 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRDPTG 524
SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSI TALQLSRDPTG
Sbjct: 78 SELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIHTALQLSRDPTG 137
Query: 525 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 704
RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN
Sbjct: 138 RIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMVLLN 197
Query: 705 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVEPQL 884
SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNR VEPQL
Sbjct: 198 SLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRRVEPQL 257
Query: 885 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 1064
QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA
Sbjct: 258 QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSIVLLSPA 317
Query: 1065 VIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 1244
VIDSPLKLELRV+APPRCTIKP+GTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM
Sbjct: 318 VIDSPLKLELRVMAPPRCTIKPSGTTISVTASVTIALVPPGQPEVQLSSMTMDARLSAKM 377
Query: 1245 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLHERTWRGV 1415
ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAP +TMLQIGVMPML+ERTWRGV
Sbjct: 378 ALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPLKTMLQIGVMPMLNERTWRGV 434
>ref|NP_001152779.1| bactericidal permeability-increasing protein [Sus scrofa].
Length = 483
Score = 170 bits (430), Expect = 2e-42
Identities = 124/428 (28%), Positives = 204/428 (47%), Gaps = 14/428 (3%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGRE-----GHFYYNISEVKVTELQ 335
PG RIT K L+ Q+G+ L +ELE ITIP G G YN + V E +
Sbjct: 30 PGIVARITQKGLDYACQQGVATLRKELEKITIPTFSGSFKIKYFGKGRYNFYSMVVREFK 89
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L +S++ P+Q L L I + S+ + + + F G + S E +S+ +L+L D
Sbjct: 90 LPTSQIRLSPDQGLDLSIKDASVKISGKWKAQKNFIKASGNFDLSVERISVLASLRLGYD 149
Query: 516 PT-GRIKVSNVSCQASVSRMHA-AFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
PT G VS SC++ ++R+H G + K + + I S +R + +IC +L +
Sbjct: 150 PTSGHSTVSCSSCRSHINRVHVRTSGSSLKWLIQLFHRNIESALRKAMESKICKMLTNTV 209
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
L T+PV VD +VGI+YSL+ P A+ NLD +G F+ L + P
Sbjct: 210 SSKLQPYFQTLPVTAKVDRMVGINYSLVAPPKATAENLDGLLKGEFFSLDHPS---PPPF 266
Query: 870 VEPQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFG 1040
P L + +RMVY+ SE+FF++A Y +AG L L++ +P L +FG
Sbjct: 267 APPALALPADHDRMVYLCISEYFFNTAGLVYQKAGVLNLTINNSMIPKKSLFSLTTNFFG 326
Query: 1041 SIVLLSPAVIDSPLKLELRVIA----PPRCTIKPAGTTISVTASVTIALVPPGQPEVQLS 1208
+++ P V +E++ + PP T+ P+G ++ V P L
Sbjct: 327 TLI---PKVSTMFPNMEMQFLIWASFPPHLTVHPSGLDLTFVLETQAFAVLPNASLAPLF 383
Query: 1209 SMTMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPM 1388
+ M++ +S + +R K L +L L + + S + ++ LQA + V+P
Sbjct: 384 LIEMNSSISVDIGVRSKRLIGELRLNKLLLELKHSNIGPFSVELLQAVMNFAVPTLVLPK 443
Query: 1389 LHERTWRG 1412
++E+ RG
Sbjct: 444 INEKLQRG 451
>ref|XP_003126122.1| PREDICTED: bactericidal/permeability-increasing protein-like 2 [Sus
scrofa].
Length = 507
Score = 139 bits (351), Expect = 3e-33
Identities = 102/427 (23%), Positives = 194/427 (45%), Gaps = 12/427 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGREG-------HFYYNISEVKVTE 329
PG K R T +AL+ Q G+ +EQ ++ IP+L G E + YN + +K+
Sbjct: 28 PGIKARATQRALDYGVQVGMEIIEQMVKKRDIPNLNGSESLEFLKVDYVNYNFTNIKINA 87
Query: 330 LQLTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLS 509
++ L F P + N+G+ + ++ F D G + V + L+
Sbjct: 88 FSFPNTSLAFVPGVGIRALTNHGTANISTDWEIKSPLFRDTGGADLFLSEVYFTGNVILT 147
Query: 510 RDPTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAG 689
R+ G + C A VS +F G +Y + + + LN+ +CP++ +
Sbjct: 148 RNNFGHPILKLQDCHAQVSHADVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPMVT-SE 206
Query: 690 MVLLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRA 869
+ LN+ L + V +D +DYSL+ P + + +++ +G FYPL GN + P +
Sbjct: 207 VEALNANLSMLEVITKIDNYTLLDYSLISSPDITENYIELYLKGVFYPL--GNLTDPPFS 264
Query: 870 VEPQL--QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATY-FG 1040
P + + M+Y+ SE+FF SA +YF AGA ++L ++ D L+R + G
Sbjct: 265 SVPFVLPDRSDSMLYIGISEYFFKSASYAYFTAGAFNITLSTKEIT---DHLIRTSQGLG 321
Query: 1041 SIV--LLSPAVIDSPLKLELRVIAPPRCTIKPAGTTISVTASVTIALVPPGQPEVQLSSM 1214
+++ + ++ P + + PP + P T+ + AS+ I + SM
Sbjct: 322 NMLSRIAELYILSQPFMVRVMATEPPLINLLPGNFTLDIPASIMILTQSKNSTAETIVSM 381
Query: 1215 TMDARLSAKMALRGKALRTQLDLRRFRIYSNQSALESLALIPLQAPSETMLQIGVMPMLH 1394
A + + G+ L L L RFR+ +S ++ ++ + ++L G++P+ +
Sbjct: 382 DFVASTDVALVILGQRLICSLSLNRFRLSLPESNRSNIEVLRFENILSSILHFGILPLAN 441
Query: 1395 ERTWRGV 1415
+ +G+
Sbjct: 442 AKLQQGL 448
>ref|XP_003360027.1| PREDICTED: lipopolysaccharide-binding protein-like [Sus scrofa].
Length = 482
Score = 121 bits (303), Expect = 1e-27
Identities = 87/301 (28%), Positives = 137/301 (45%), Gaps = 8/301 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGR-----EGHFYYNISEVKVTELQ 335
PG RIT+K LE V +EG+ L+ +L +T+PD G G +Y + + +
Sbjct: 29 PGLVARITNKGLEYVAREGVATLQSKLHEVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 88
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L S L P Q L L I++ S+ ++ + ++ G + +G++I L L +
Sbjct: 89 LLGSTLTPLPGQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 148
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
+GR V+ SC + + + G + I S R L +IC +
Sbjct: 149 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 208
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L TVPV +D L GIDYSL++ P A+ LD+ +G + L + P +
Sbjct: 209 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLA 265
Query: 876 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
P + +E RMVY A S++ F +A Y AG L S+ D VP ++ L F +
Sbjct: 266 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 325
Query: 1047 V 1049
V
Sbjct: 326 V 326
>ref|NP_001121907.1| lipopolysaccharide-binding protein [Sus scrofa].
Length = 481
Score = 120 bits (300), Expect = 2e-27
Identities = 87/301 (28%), Positives = 136/301 (45%), Gaps = 8/301 (2%)
Frame = +3
Query: 171 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGR-----EGHFYYNISEVKVTELQ 335
PG RIT+K LE V +EG+ L+ +L +T+PD G G +Y + + +
Sbjct: 28 PGLVARITNKGLEYVAREGVATLQSKLHEVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 87
Query: 336 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIQTALQLSRD 515
L S L P Q L L I++ S+ ++ + ++ G + +G++I L L
Sbjct: 88 LLGSTLTPLPGQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSG 147
Query: 516 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 695
+GR V+ SC + + + G + I S R L +IC +
Sbjct: 148 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 207
Query: 696 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRAVE 875
L L TVPV +D L GIDYSL++ P A+ LD+ +G + L + P +
Sbjct: 208 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLA 264
Query: 876 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 1046
P + +E RMVY A S++ F +A Y AG L S+ D VP ++ L F +
Sbjct: 265 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 324
Query: 1047 V 1049
V
Sbjct: 325 V 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,138,070
Number of extensions: 974512
Number of successful extensions: 4547
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4532
Number of HSP's successfully gapped: 5
Length of query: 472
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 369
Effective length of database: 8,779,541
Effective search space: 3239650629
Effective search space used: 3239650629
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003043
(1416 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1863 0.0
Sscrofa_Chr17 357 1e-95
Sscrofa_Chr01 153 3e-34
>Sscrofa_Chr13
|| Length = 218635234
Score = 1863 bits (940), Expect = 0.0
Identities = 1279/1389 (92%), Gaps = 21/1389 (1%)
Strand = Plus / Plus
Query: 29 agaccccgccgaccggatcctcagagctgcccgcctccccacgtgactgcgccgaccacc 88
||||||||||||| |||||||||||||||||||||||||||| |||||| ||| | ||||
Sbjct: 23916791 agaccccgccgactggatcctcagagctgcccgcctccccacttgactgtgccaaacacc 23916850
Query: 89 agctccactgctgagcccacgcgccatggccctcttaggggccctcttcctagtgctgct 148
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 23916851 cgctccactgctgagcccactcgccatagccctcttaggggccctcttcctagtgctgct 23916910
Query: 149 ggcgggcgctcacgcggagctccccggctgcaaaatccgcatcacctccaaggcgctgga 208
||| || ||||||| || |||||| ||||||||||| ||||||||| ||||| ||||||
Sbjct: 23916911 ggcaggtgctcacggggggctccctggctgcaaaatttgcatcacctgcaaggtgctgga 23916970
Query: 209 gctggtgaagcaggaggggctgcgctttctggagcaagagctggagaccattaccattcc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23916971 gctggtgaagcaggaggggctgcgctttctggagcaagagctggagaccattaccattcc 23917030
Query: 269 ggatctgcggggcagggaaggccacttctactacaacatctctgaggtgaaggtcacgga 328
|||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 23917031 ggatctgcagggcagggagggccacttctactacaacatctctgaagtgaaggtcacgga 23917090
Query: 329 gctgcagctgacatcctctgagctccatttccagccagagcaggagctgatgctacaaat 388
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 23917091 gctgcagctgacatcctctgagctccatttccagccagagcaggacctgatgctacaaat 23917150
Query: 389 caacaatggctccttggggcttcgcttccggaggcagcttctctactggttcttctatga 448
||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 23917151 caacaatggctccttggggctgcgcttccggagacagcttctctactgg----------- 23917199
Query: 449 tgggggctatatcaacgcatccgccgagggcgtttccatccaaacggctctgcagctctc 508
||||||| ||||||| || |||||||| || |||||||| || ||||||||||||||
Sbjct: 23917200 ---gggctatgtcaacgcgtcagccgagggtgtatccatccacacagctctgcagctctc 23917256
Query: 509 ccgggatcccactggccggatcaaagtgtccaacgtctcctgccaggcctctgtctccag 568
|||||| ||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 23917257 ccgggaccccac-ggccagatcaaagtatccaatgtctcctgccaggcctctgtctccag 23917315
Query: 569 aatgcacgcagcctttggaggaaccttcaagaaggtgtatgaattcctgtccactttcat 628
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 23917316 aatgcacgcagcctttggaggaaccttca-gaaggtgtatgaattcctgtccaccttcat 23917374
Query: 629 cacctcggggatgcgcttcctcctcaaccagcagatctgccccgtgctctaccatgcagg 688
||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 23917375 cacctcggggaggcacttcctcctcaaccaggagatctgccccgtgctctactatgcagg 23917434
Query: 689 gatggtgcttctcaactccctcctggacactgtgcctgtgcgcggtgctgtggacgagct 748
|| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 23917435 gacagtgcttctcaactccctcctggacaccgtgcctgtgcatggtgctgtggacgagct 23917494
Query: 749 ggtgggcattgactactcgctcctgaaagatcccgtggcctccaccagcaatctggacat 808
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23917495 ggttggcattgactactcactcctgaaagatcccgtggcctccaccagcaatctggacat 23917554
Query: 809 ggaattccggggggccttctatcccctggctgaggggaactggagcctgcccaaccgggc 868
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 23917555 ggaattccagggggccttctatcccctggctgaggggaactggagcctgcccaaccagga 23917614
Query: 869 ggtggagccgcagctgcaggaggaagagcggatggtgtacgtggccttctctgagttctt 928
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 23917615 ggtggagccgcagctgcaggaagaagagcggatggtgtacgcagccttctctgagttct- 23917673
Query: 929 cttcgactctgccatggagagctacttccgggcgggggccctgaagctgtcgctggtggg 988
|||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||
Sbjct: 23917674 --tcgactctgccatggacagctacttccgggcaggggccctacagctgttgctggtggg 23917731
Query: 989 ggacaaggtgccccatgacctggacatgctgctgagggccacctatttcgggagcattgt 1048
||||||| || ||||||| |||||||||||||||||||||||||| || |||||| ||||
Sbjct: 23917732 ggacaagatgacccatgatctggacatgctgctgagggccacctactttgggagccttgt 23917791
Query: 1049 cctgttgagcccggccgtgattgactctccgctgaagctggagctgcgggtcatagcacc 1108
|||| |||||||||| |||||||||||||||||||| ||| |||||| |||||| |||||
Sbjct: 23917792 cctgctgagcccggcagtgattgactctccgctgaaactgcagctgcaggtcatggcacc 23917851
Query: 1109 accgcgctgcaccatcaagcccgcgggcaccaccatctctgtcaccgccagtgtcaccat 1168
|||| |||||||||||| |||| |||||||||||||||| |||||| |||||||||||||
Sbjct: 23917852 accgtgctgcaccatcaggccctcgggcaccaccatctccgtcaccaccagtgtcaccat 23917911
Query: 1169 tgccctggtcccacccggccagcctgaggtccagctgtccagcatgaccatggatgcccg 1228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 23917912 tgccctggtcccacccggccagcctgaggtccagctgtccagcatgaccatggatgccgg 23917971
Query: 1229 actgagcgccaagatggccctccgggggaaggcgctgcgcacacagctggacctgcgcag 1288
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 23917972 acttagcgccaagatggccctctgggggaaggcactgcgcacacagctggacctgcgcag 23918031
Query: 1289 gttcagaatctactcgaaccagtctgcactggagtcactggcactgatcccgctgcaggc 1348
|||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct: 23918032 gttcagaatctactcgaaccagtctgcactggagtcaccagcaccgaccccactgcagg- 23918090
Query: 1349 cccctctgaa-accatgctgcagattggggtgatgcccatgcttcatgagcggacctggc 1407
| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 23918091 cttctctgaagaccatgctgcagattggggtgatgcccatgctcaatgaccggacctggc 23918150
Query: 1408 gaggggtgc 1416
||||||||
Sbjct: 23918151 aaggggtgc 23918159
>Sscrofa_Chr17
|| Length = 69701581
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 818 gggggccttctatcccctggctgaggggaactggagcctgcccaaccgggcggtggagcc 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53842573 gggggccttctatcccctggctgaggggaactggagcctgcccaaccgggcggtggagcc 53842632
Query: 878 gcagctgcaggaggaagagcggatggtgtacgtggccttctctgagttcttcttcgactc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53842633 gcagctgcaggaggaagagcggatggtgtacgtggccttctctgagttcttcttcgactc 53842692
Query: 938 tgccatggagagctacttccgggcgggggccctgaagctgtcgctggtgggggacaaggt 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53842693 tgccatggagagctacttccgggcgggggccctgaagctgtcgctggtgggggacaaggt 53842752
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 443 ctatgatgggggctatatcaacgcatccgccgagggcgtttccatccaaacggctctgca 502
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 53738681 ctatgatgggggctatatcaacgcatccgccgagggcgtttccatccacacggctctgca 53738622
Query: 503 gctctcccgggatcccactggccggatcaaagtgtccaacgtctcctgccaggcctctgt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53738621 gctctcccgggatcccactggccggatcaaagtgtccaacgtctcctgccaggcctctgt 53738562
Query: 563 ctccagaatgcacgcagcctttggaggaaccttcaag 599
|||||||||||||||||||||||||||||||||||||
Sbjct: 53738561 ctccagaatgcacgcagcctttggaggaaccttcaag 53738525
Score = 283 bits (143), Expect = 1e-73
Identities = 161/167 (96%)
Strand = Plus / Plus
Query: 1055 gagcccggccgtgattgactctccgctgaagctggagctgcgggtcatagcaccaccgcg 1114
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 53844845 gagcccggccgtgattgactctcccctgaagctggagctgcgggtcatggcaccaccgcg 53844904
Query: 1115 ctgcaccatcaagcccgcgggcaccaccatctctgtcaccgccagtgtcaccattgccct 1174
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 53844905 ctgcaccatcaagccctcgggcaccaccatatccgtcaccgccagtgtcaccattgccct 53844964
Query: 1175 ggtcccacccggccagcctgaggtccagctgtccagcatgaccatgg 1221
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 53844965 ggtcccacccggccagcgtgaggtccagctgtccagcatgaccatgg 53845011
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 314 ggtgaaggtcacggagctgcagctgacatcctctgagctccatttccagccagagcagga 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53739122 ggtgaaggtcacggagctgcagctgacatcctctgagctccatttccagccagagcagga 53739063
Query: 374 gctgatgctacaaatcaacaatggctccttggggcttcgcttccggaggcagcttctcta 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53739062 gctgatgctacaaatcaacaatggctccttggggcttcgcttccggaggcagcttctcta 53739003
Query: 434 ctggttctt 442
|||||||||
Sbjct: 53739002 ctggttctt 53738994
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 103 gcccacgcgccatggccctcttaggggccctcttcctagtgctgctggcgggcgctcacg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53740301 gcccacgcgccatggccctcttaggggccctcttcctagtgctgctggcgggcgctcacg 53740242
Query: 163 cggagctccccggctgcaaaatccgcatcacctccaaggcgctggagctgg 213
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53740241 cggagctccccggctgcaaaatccgcatcacctccaaggcgctggagctgg 53740191
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 213 gtgaagcaggaggggctgcgctttctggagcaagagctggagaccattaccattccggat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53740106 gtgaagcaggaggggctgcgctttctggagcaagagctggagaccattaccattccggat 53740047
Query: 273 ctgcggggcagggaaggccacttctactacaacatctctgag 314
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53740046 ctgcggggcagggaaggccacttctactacaacatctctgag 53740005
Score = 186 bits (94), Expect = 2e-44
Identities = 101/102 (99%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 3 aaggcggctgaaa-agagctgcccgccagaccccgccgaccggatcctcagagctgcccg 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53741027 aaggcggctgaaacagagctgcccgccagaccccgccgaccggatcctcagagctgcccg 53740968
Query: 62 cctccccacgtgactgcgccgaccaccagctccactgctgag 103
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53740967 cctccccacgtgactgcgccgaccaccagctccactgctgag 53740926
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 726 gtgcgcggtgctgtggacgagctggtgggcattgactactcgctcctgaaagatcccgtg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53841379 gtgcgcggtgctgtggacgagctggtgggcattgactactcgctcctgaaagatcccgtg 53841438
Query: 786 gcctccaccagcaatctggacatggaattccggg 819
||||||||||||||||||||||||||||||||||
Sbjct: 53841439 gcctccaccagcaatctggacatggaattccggg 53841472
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 660 cagatctgccccgtgctctaccatgcagggatggtgcttctcaactccctcctggacact 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53840189 cagatctgccccgtgctctaccatgcagggatggtgcttctcaactccctcctggacact 53840248
Query: 720 gtgcctg 726
|||||||
Sbjct: 53840249 gtgcctg 53840255
Score = 127 bits (64), Expect = 2e-26
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1220 ggatgcccgactgagcgccaagatgg-ccctccgggggaaggcgctgcgcacacagctgg 1278
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 53845110 ggatgcccgactgagcgccaagatgggccctccgggggaaggcgctgcgcacacagctgg 53845169
Query: 1279 acctgcgcaggt 1290
||||||||||||
Sbjct: 53845170 acctgcgcaggt 53845181
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 994 aggtgccccatgacctggacatgctgctgagggccacctatttcgggagcattgtcctgt 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53842830 aggtgccccatgacctggacatgctgctgagggccacctatttcgggagcattgtcctgt 53842889
Query: 1054 tg 1055
||
Sbjct: 53842890 tg 53842891
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1286 caggttcagaatctactcgaaccagtctgcactggagtcactggca 1331
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53846863 caggttcagaatctactcgaaccagtctgcactggagtcactggca 53846908
Score = 87.7 bits (44), Expect = 2e-14
Identities = 58/60 (96%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1332 ctgatcccgctgcaggccccctctgaa-accatgctgcagattggggtgatgcccatgct 1390
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 53847036 ctgatcccgctgcaggcccc-tctgaagaccatgctgcagattggggtgatgcccatgct 53847094
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 631 cctcggggatgcgcttcctcctcaaccagcag 662
||||||||||||||||||||||||||||||||
Sbjct: 53840077 cctcggggatgcgcttcctcctcaaccagcag 53840108
>Sscrofa_Chr01
|| Length = 315321322
Score = 153 bits (77), Expect = 3e-34
Identities = 117/129 (90%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 314 ggtgaaggtcacggagctgcagctgacatcctctgagctccatttccagccagagcagga 373
||||||||||| ||| ||||||||||| | |||||||||||||||||||||| |||||||
Sbjct: 110478322 ggtgaaggtcatggaactgcagctgacgttctctgagctccatttccagccacagcagga 110478263
Query: 374 gctgatgctacaaatcaacaatggctcc-ttggggcttcgcttccggaggcagcttctct 432
| ||||| ||||||||| |||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 110478262 gatgatggtacaaatcagcaatggctcctttggggctgagcttccagaggcagcttctct 110478203
Query: 433 actggttct 441
|||||||||
Sbjct: 110478202 actggttct 110478194
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,789,513
Number of extensions: 239
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 17
Length of query: 1416
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1395
Effective length of database: 2,808,413,156
Effective search space: 3917736352620
Effective search space used: 3917736352620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)