Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003046
(1101 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039409.1| cysteinyl-tRNA synthetase, mitochondrial pre... 580 e-166
Alignment gi|NP_001096719.1| cysteinyl-tRNA synthetase, cytoplasmic [Bos ... 213 2e-55
>ref|NP_001039409.1| cysteinyl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 555
Score = 580 bits (1496), Expect = e-166
Identities = 271/325 (83%), Positives = 295/325 (90%)
Frame = +3
Query: 126 WLQPAGYDTGVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIR 305
WLQP GYDTGVKVYNSLTRRKDPLIVS ADAASWYSCGPTVYDHAHLGHACSYVRFDIIR
Sbjct: 34 WLQPTGYDTGVKVYNSLTRRKDPLIVSRADAASWYSCGPTVYDHAHLGHACSYVRFDIIR 93
Query: 306 RILTRVFGCSXXXXXXXXXXXXKIIKRANELNVSPASLANLYEEDFKQDMAALKVLPPTV 485
RIL+RVFGC+ KII+RANE++VSPASLA LYEEDFKQDMAALKVLPPT
Sbjct: 94 RILSRVFGCTVVMVMGITDVDDKIIRRANEMSVSPASLARLYEEDFKQDMAALKVLPPTA 153
Query: 486 YMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFDLQSRGAKYGKLVGVVPDPMGEPGDS 665
Y+RVTE++PQIVAFI +IA+GHAY TA+GNVYFDLQSRG +YGKLVGV P P+GEP DS
Sbjct: 154 YLRVTEHVPQIVAFIERLIANGHAYCTAKGNVYFDLQSRGDRYGKLVGVAPGPVGEPVDS 213
Query: 666 DKRHAGDFALWKAAKPQEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFP 845
DKRH DFALWKAAKPQEPFW SPWG+GRPGWHIECST++SLVFGS+LDIHSGG+DLAFP
Sbjct: 214 DKRHTSDFALWKAAKPQEPFWGSPWGDGRPGWHIECSTIASLVFGSQLDIHSGGVDLAFP 273
Query: 846 HHENEIAQCEAFHRCPQWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFR 1025
HHENEIAQCEAFH+CPQWGNYFLHSGHLHV+GG EKMSKSL+NYVTIKDFLRS SPDVFR
Sbjct: 274 HHENEIAQCEAFHQCPQWGNYFLHSGHLHVKGGGEKMSKSLKNYVTIKDFLRSTSPDVFR 333
Query: 1026 LFCLRSSYGSAVDYSDGALLQARRL 1100
LFCLRSSY SA+DYS+GALL+AR L
Sbjct: 334 LFCLRSSYRSAIDYSEGALLEARSL 358
>ref|NP_001096719.1| cysteinyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 832
Score = 213 bits (543), Expect = 2e-55
Identities = 116/252 (46%), Positives = 153/252 (60%), Gaps = 22/252 (8%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +E +F +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y++ G+VYFD
Sbjct: 297 SELPKFWEAEFHKDMEALNVLPPDVLTRVSEYVPEIVDFVQKIVDNGYGYAS-NGSVYFD 355
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
+ G YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 356 TVKFANTEGHSYGKLV---PEAVGDQKALHEGEGDLSVSAERLSEKRSPNDFALWKASKP 412
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 413 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 472
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 473 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSA 530
Query: 1074 GAL---LQARRL 1100
+ LQ RL
Sbjct: 531 NTMESALQYERL 542
Score = 84.0 bits (206), Expect = 2e-16
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 126 WLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDII 302
W PAG + +++YNSLTRRKD + +WY CGPTVYD +H+GHA SY+ FDI+
Sbjct: 102 WSPPAGSEPCQLRLYNSLTRRKDVFVPQDGRRVTWYCCGPTVYDASHMGHARSYISFDIL 161
Query: 303 RRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
RR+L F KIIKRA +
Sbjct: 162 RRVLRDYFKFDVFYCMNITDIDDKIIKRARQ 192
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,089,133
Number of extensions: 1011545
Number of successful extensions: 4287
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4279
Number of HSP's successfully gapped: 3
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003046
(1101 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534184.2| PREDICTED: similar to CG8257-PA [Canis familiar... 509 e-144
Alignment gi|XP_533205.2| PREDICTED: similar to cysteinyl-tRNA synthetase... 214 1e-55
Alignment gi|XP_863344.1| PREDICTED: similar to cysteinyl-tRNA synthetase... 214 1e-55
Alignment gi|XP_851224.1| PREDICTED: similar to cysteinyl-tRNA synthetase... 214 1e-55
>ref|XP_534184.2| PREDICTED: similar to CG8257-PA [Canis familiaris].
Length = 628
Score = 509 bits (1311), Expect = e-144
Identities = 238/291 (81%), Positives = 263/291 (90%)
Frame = +3
Query: 228 YSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCSXXXXXXXXXXXXKIIKRANELNVS 407
YSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG + KII RA+E+NVS
Sbjct: 141 YSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGYNVIMVMGITDVDDKIIHRASEMNVS 200
Query: 408 PASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYF 587
PASLANLYEE+FKQDMAALKVLPPTVY+RVTE IPQI++FI GIIA+GHAYSTA+GNVYF
Sbjct: 201 PASLANLYEEEFKQDMAALKVLPPTVYVRVTETIPQIISFIEGIIANGHAYSTAQGNVYF 260
Query: 588 DLQSRGAKYGKLVGVVPDPMGEPGDSDKRHAGDFALWKAAKPQEPFWASPWGNGRPGWHI 767
DLQSRG KYGKLVGVVP P+GEP DSDKRHA DFALWKAAKPQE FWASPWG GRPGWHI
Sbjct: 261 DLQSRGDKYGKLVGVVPGPLGEPVDSDKRHASDFALWKAAKPQEVFWASPWGKGRPGWHI 320
Query: 768 ECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCPQWGNYFLHSGHLHVEGGE 947
ECST+SSLVFGS+LDIHSGG+DLAFPHHENEIAQCEAFH+C QWGNYFLHSGHLHV+G E
Sbjct: 321 ECSTISSLVFGSQLDIHSGGVDLAFPHHENEIAQCEAFHQCKQWGNYFLHSGHLHVKGKE 380
Query: 948 EKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSDGALLQARRL 1100
EKMSKSL+NY+TIKDFL++ SPDVFRLFC+RSSY +A+DYSDG +L+A+ L
Sbjct: 381 EKMSKSLKNYITIKDFLKTFSPDVFRLFCMRSSYRAAIDYSDGTMLEAKHL 431
>ref|XP_533205.2| PREDICTED: similar to cysteinyl-tRNA synthetase isoform b isoform 1
[Canis familiaris].
Length = 748
Score = 214 bits (545), Expect = 1e-55
Identities = 114/246 (46%), Positives = 150/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +EE+F +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y++ G+VYFD
Sbjct: 213 SKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYAS-NGSVYFD 271
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 272 TVKFASSERHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 328
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 329 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 388
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 389 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 446
Query: 1074 GALLQA 1091
+ A
Sbjct: 447 NTMESA 452
Score = 85.1 bits (209), Expect = 1e-16
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG +++YNSLTR KD I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 17 QWSPPAGSPPCKLRLYNSLTRNKDVFIPQHGKKVTWYCCGPTVYDASHMGHARSYISFDI 76
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L FG KIIKRA +
Sbjct: 77 LRRVLRDYFGYDVFYCMNITDVDDKIIKRARQ 108
>ref|XP_863344.1| PREDICTED: similar to cysteinyl-tRNA synthetase isoform c isoform 3
[Canis familiaris].
Length = 827
Score = 214 bits (545), Expect = 1e-55
Identities = 114/246 (46%), Positives = 150/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +EE+F +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y++ G+VYFD
Sbjct: 292 SKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYAS-NGSVYFD 350
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 351 TVKFASSERHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 407
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 408 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 467
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 468 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 525
Query: 1074 GALLQA 1091
+ A
Sbjct: 526 NTMESA 531
Score = 85.1 bits (209), Expect = 1e-16
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG +++YNSLTR KD I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 100 QWSPPAGSPPCKLRLYNSLTRNKDVFIPQHGKKVTWYCCGPTVYDASHMGHARSYISFDI 159
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L FG KIIKRA +
Sbjct: 160 LRRVLRDYFGYDVFYCMNITDVDDKIIKRARQ 191
>ref|XP_851224.1| PREDICTED: similar to cysteinyl-tRNA synthetase isoform c isoform 2
[Canis familiaris].
Length = 831
Score = 214 bits (545), Expect = 1e-55
Identities = 114/246 (46%), Positives = 150/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +EE+F +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y++ G+VYFD
Sbjct: 296 SKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYAS-NGSVYFD 354
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 355 TVKFASSERHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 411
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 412 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 471
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 472 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 529
Query: 1074 GALLQA 1091
+ A
Sbjct: 530 NTMESA 535
Score = 85.1 bits (209), Expect = 1e-16
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG +++YNSLTR KD I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 100 QWSPPAGSPPCKLRLYNSLTRNKDVFIPQHGKKVTWYCCGPTVYDASHMGHARSYISFDI 159
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L FG KIIKRA +
Sbjct: 160 LRRVLRDYFGYDVFYCMNITDVDDKIIKRARQ 191
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,996,318
Number of extensions: 1051816
Number of successful extensions: 4397
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4385
Number of HSP's successfully gapped: 7
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003046
(1101 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078813.1| probable cysteinyl-tRNA synthetase, mitochondri... 562 e-160
Alignment gi|NP_001181926.1| cysteinyl-tRNA synthetase, cytoplasmic isofo... 213 3e-55
Alignment gi|NP_001742.1| cysteinyl-tRNA synthetase, cytoplasmic isoform ... 213 3e-55
Alignment gi|NP_001014437.1| cysteinyl-tRNA synthetase, cytoplasmic isofo... 213 3e-55
Alignment gi|NP_644802.1| cysteinyl-tRNA synthetase, cytoplasmic isoform ... 213 3e-55
>ref|NP_078813.1| probable cysteinyl-tRNA synthetase, mitochondrial precursor [Homo
sapiens].
Length = 564
Score = 562 bits (1448), Expect = e-160
Identities = 262/325 (80%), Positives = 292/325 (89%)
Frame = +3
Query: 126 WLQPAGYDTGVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIR 305
WLQP G +TGV+VYNSLT RK+PLIV+ A+AASWYSCGPTVYDHAHLGHACSYVRFDIIR
Sbjct: 42 WLQPTGRETGVQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIR 101
Query: 306 RILTRVFGCSXXXXXXXXXXXXKIIKRANELNVSPASLANLYEEDFKQDMAALKVLPPTV 485
RILT+VFGCS KIIKRANE+N+SPASLA+LYEEDFKQDMAALKVLPPTV
Sbjct: 102 RILTKVFGCSIVMVMGITDVDDKIIKRANEMNISPASLASLYEEDFKQDMAALKVLPPTV 161
Query: 486 YMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFDLQSRGAKYGKLVGVVPDPMGEPGDS 665
Y+RVTENIPQI++FI GIIA G+AYSTA+GNVYFDL+SRG KYGKLVGVVP P+GEP DS
Sbjct: 162 YLRVTENIPQIISFIEGIIARGNAYSTAKGNVYFDLKSRGDKYGKLVGVVPGPVGEPADS 221
Query: 666 DKRHAGDFALWKAAKPQEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFP 845
DKRHA DFALWKAAKPQE FWASPWG GRPGWHIECS ++S+VFGS+LDIHSGGIDLAFP
Sbjct: 222 DKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLAFP 281
Query: 846 HHENEIAQCEAFHRCPQWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFR 1025
HHENEIAQCE FH+C QWGNYFLHSGHLH +G EEKMSKSL+NY+TIKDFL++ SPDVFR
Sbjct: 282 HHENEIAQCEVFHQCEQWGNYFLHSGHLHAKGKEEKMSKSLKNYITIKDFLKTFSPDVFR 341
Query: 1026 LFCLRSSYGSAVDYSDGALLQARRL 1100
FCLRSSY SA+DYSD A+LQA++L
Sbjct: 342 FFCLRSSYRSAIDYSDSAMLQAQQL 366
>ref|NP_001181926.1| cysteinyl-tRNA synthetase, cytoplasmic isoform e [Homo sapiens].
Length = 809
Score = 213 bits (541), Expect = 3e-55
Identities = 114/246 (46%), Positives = 148/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +E DF +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y + G+VYFD
Sbjct: 296 SKLPKFWEGDFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGY-VSNGSVYFD 354
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 355 TAKFASSEKHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 411
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 412 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 471
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 472 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 529
Query: 1074 GALLQA 1091
+ A
Sbjct: 530 NTMESA 535
Score = 80.1 bits (196), Expect = 3e-15
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG + +YNSLTR K+ I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 100 QWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDI 159
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L F KIIKRA +
Sbjct: 160 LRRVLKDYFKFDVFYCMNITDIDDKIIKRARQ 191
>ref|NP_001742.1| cysteinyl-tRNA synthetase, cytoplasmic isoform b [Homo sapiens].
Length = 748
Score = 213 bits (541), Expect = 3e-55
Identities = 114/246 (46%), Positives = 148/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +E DF +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y + G+VYFD
Sbjct: 213 SKLPKFWEGDFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGY-VSNGSVYFD 271
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 272 TAKFASSEKHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 328
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 329 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 388
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 389 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 446
Query: 1074 GALLQA 1091
+ A
Sbjct: 447 NTMESA 452
Score = 80.1 bits (196), Expect = 3e-15
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG + +YNSLTR K+ I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 17 QWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDI 76
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L F KIIKRA +
Sbjct: 77 LRRVLKDYFKFDVFYCMNITDIDDKIIKRARQ 108
>ref|NP_001014437.1| cysteinyl-tRNA synthetase, cytoplasmic isoform c [Homo sapiens].
Length = 831
Score = 213 bits (541), Expect = 3e-55
Identities = 114/246 (46%), Positives = 148/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +E DF +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y + G+VYFD
Sbjct: 296 SKLPKFWEGDFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGY-VSNGSVYFD 354
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 355 TAKFASSEKHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 411
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 412 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 471
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 472 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 529
Query: 1074 GALLQA 1091
+ A
Sbjct: 530 NTMESA 535
Score = 80.1 bits (196), Expect = 3e-15
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG + +YNSLTR K+ I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 100 QWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDI 159
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L F KIIKRA +
Sbjct: 160 LRRVLKDYFKFDVFYCMNITDIDDKIIKRARQ 191
>ref|NP_644802.1| cysteinyl-tRNA synthetase, cytoplasmic isoform a [Homo sapiens].
Length = 726
Score = 213 bits (541), Expect = 3e-55
Identities = 114/246 (46%), Positives = 148/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +E DF +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y + G+VYFD
Sbjct: 213 SKLPKFWEGDFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGY-VSNGSVYFD 271
Query: 591 L----QSRGAKYGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
S YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 272 TAKFASSEKHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 328
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 329 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 388
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 389 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 446
Query: 1074 GALLQA 1091
+ A
Sbjct: 447 NTMESA 452
Score = 80.1 bits (196), Expect = 3e-15
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG + +YNSLTR K+ I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 17 QWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDI 76
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L F KIIKRA +
Sbjct: 77 LRRVLKDYFKFDVFYCMNITDIDDKIIKRARQ 108
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,033,513
Number of extensions: 1024575
Number of successful extensions: 4155
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4140
Number of HSP's successfully gapped: 9
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003046
(1101 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077210.1| probable cysteinyl-tRNA synthetase, mitochondri... 531 e-151
Alignment gi|NP_038770.3| cysteinyl-tRNA synthetase, cytoplasmic [Mus mus... 214 1e-55
>ref|NP_077210.1| probable cysteinyl-tRNA synthetase, mitochondrial [Mus musculus].
Length = 552
Score = 531 bits (1367), Expect = e-151
Identities = 249/326 (76%), Positives = 283/326 (86%), Gaps = 1/326 (0%)
Frame = +3
Query: 126 WLQPAGYDTGVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIR 305
W +P G DTGV+V+NSLT RK+PLIV+ +DA SWYSCGPTVYDHAHLGHACSYVRFDIIR
Sbjct: 27 WQRPQGQDTGVQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIR 86
Query: 306 RILTRVFGCSXXXXXXXXXXXXKIIKRANELNVSPASLANLYEEDFKQDMAALKVLPPTV 485
RILTRVFGC+ KIIKRANE+NV+PASLA+L+EE+FKQDMAALKVLPPTV
Sbjct: 87 RILTRVFGCNVVMAMSITDVDDKIIKRANEMNVTPASLASLFEEEFKQDMAALKVLPPTV 146
Query: 486 YMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFDLQSRGAKYGKLVGVVPDPMGEP-GD 662
Y+RVTENIPQI+AFI GIIA GHAYSTA G+VYFDL +RG KYGKLV VP EP GD
Sbjct: 147 YLRVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKLVNTVPSATAEPAGD 206
Query: 663 SDKRHAGDFALWKAAKPQEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAF 842
SDKRH+ DFALWKAAKPQE FWASPWG+GRPGWHIECST++S VFGS LDIH+GGIDLAF
Sbjct: 207 SDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDLAF 266
Query: 843 PHHENEIAQCEAFHRCPQWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVF 1022
PHHENEIAQ E FH+C QWGNYFLHSGHLHV+G EEKMSKSL+NY+TIKDFL++ SPDVF
Sbjct: 267 PHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKTFSPDVF 326
Query: 1023 RLFCLRSSYGSAVDYSDGALLQARRL 1100
RLFCLR++Y SA++YSD L++A+ L
Sbjct: 327 RLFCLRTNYRSAIEYSDSTLVEAKHL 352
>ref|NP_038770.3| cysteinyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 831
Score = 214 bits (545), Expect = 1e-55
Identities = 114/246 (46%), Positives = 150/246 (60%), Gaps = 19/246 (7%)
Frame = +3
Query: 411 ASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAYSTARGNVYFD 590
+ L +EE+F +DM AL VLPP V RV+E +P+IV F+ I+ +G+ Y++ G+VYFD
Sbjct: 296 SKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYAS-NGSVYFD 354
Query: 591 LQSRGAK----YGKLVGVVPDPMGEP-------GD--------SDKRHAGDFALWKAAKP 713
A YGKLV P+ +G+ GD S+KR DFALWKA+KP
Sbjct: 355 TAKFAASEKHSYGKLV---PEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKP 411
Query: 714 QEPFWASPWGNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCP 893
EP W PWG GRPGWHIECS ++ + G+ +DIH GG DL FPHH+NE+AQ EA+
Sbjct: 412 GEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFEND 471
Query: 894 QWGNYFLHSGHLHVEGGEEKMSKSLRNYVTIKDFLRSASPDVFRLFCLRSSYGSAVDYSD 1073
W YFLH+GHL + G KMSKSL+N++TIKD L+ S RL L S+ +DYS
Sbjct: 472 CWVRYFLHTGHLTIAGC--KMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSS 529
Query: 1074 GALLQA 1091
+ A
Sbjct: 530 NTMESA 535
Score = 82.4 bits (202), Expect = 6e-16
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 EWLQPAGYDT-GVKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDI 299
+W PAG + +++YNSLTR KD I +WY CGPTVYD +H+GHA SY+ FDI
Sbjct: 100 QWSPPAGTEPCRLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDI 159
Query: 300 IRRILTRVFGCSXXXXXXXXXXXXKIIKRANE 395
+RR+L F KII+RA +
Sbjct: 160 LRRVLRDYFQYDVFYCMNITDIDDKIIRRARQ 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,667,227
Number of extensions: 848526
Number of successful extensions: 3507
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3497
Number of HSP's successfully gapped: 3
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003046
(1101 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131142.2| PREDICTED: cysteinyl-tRNA synthetase, mitoch... 589 e-168
>ref|XP_003131142.2| PREDICTED: cysteinyl-tRNA synthetase, mitochondrial-like [Sus
scrofa].
Length = 598
Score = 589 bits (1518), Expect = e-168
Identities = 306/401 (76%), Positives = 311/401 (77%), Gaps = 41/401 (10%)
Frame = +3
Query: 21 MLRTRGARXXXXXXXXXXXXXXXXXXXXXXXXXXEWLQPAGYDTGVKVYNSLTRRKDPLI 200
MLRTRGAR EWLQPAGYDTGVKVYNSLTRRKDPLI
Sbjct: 1 MLRTRGARLGSQLLPAALGLGPASGRAASGARGQEWLQPAGYDTGVKVYNSLTRRKDPLI 60
Query: 201 VSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCSXXXXXXXXXXXXKII 380
VSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCS KII
Sbjct: 61 VSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCSVVMVMGVTDVDDKII 120
Query: 381 KRANELNVSPASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAY 560
KRANELNVSPASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAY
Sbjct: 121 KRANELNVSPASLANLYEEDFKQDMAALKVLPPTVYMRVTENIPQIVAFIAGIIASGHAY 180
Query: 561 STARGNVYFDLQSRGAKYGKLVGVVPDPMGEPGDSDKRHAGDFALWKAAKPQEPFWASPW 740
STARGNVYFDLQSRGAKYGKLVGVVPDPMGEPGDSDKRHAGDFALWKAAKPQEPFWASPW
Sbjct: 181 STARGNVYFDLQSRGAKYGKLVGVVPDPMGEPGDSDKRHAGDFALWKAAKPQEPFWASPW 240
Query: 741 GNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCPQWGNYFLHS 920
GNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCPQWGNYFLHS
Sbjct: 241 GNGRPGWHIECSTLSSLVFGSRLDIHSGGIDLAFPHHENEIAQCEAFHRCPQWGNYFLHS 300
Query: 921 GHLHVEGGEEKMSKSLRNYVTIKDFLRSASPD----------VFRLF----------CL- 1037
GHLHVEGGEEKMSKSLRNYVTIK S +P V LF C+
Sbjct: 301 GHLHVEGGEEKMSKSLRNYVTIKVTRSSRAPRCQPAAVLGGLVVLLFPSNPCPGVERCIG 360
Query: 1038 RSSY--------------------GSAVDYSDGALLQARRL 1100
R Y +AVDYSDGA+L+ARRL
Sbjct: 361 RWLYWRSEDPRAALPTATRLPPPGSAAVDYSDGAILEARRL 401
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,262,718
Number of extensions: 651321
Number of successful extensions: 2699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2698
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003046
(1101 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 274 1e-70
gb|GL894930.2| Sus scrofa unplaced genomic scaffold ChrUScaf2814 157 2e-35
>Sscrofa_Chr11
|| Length = 87690581
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 785 cagcttggtgtttgggagtcggctggatatccactcgggcggcatagacctggcttttcc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84760227 cagcttggtgtttgggagtcggctggatatccactcgggcggcatagacctggcttttcc 84760168
Query: 845 gcaccacgagaacgaaatcgcccagtgtgaggccttccaccggtgcccacagtgggggaa 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84760167 gcaccacgagaacgaaatcgcccagtgtgaggccttccaccggtgcccacagtgggggaa 84760108
Query: 905 ctacttcctgcattcggg 922
||||||||||||||||||
Sbjct: 84760107 ctacttcctgcattcggg 84760090
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 655 caggtgactctgacaagcggcacgccggcgactttgccctgtggaaggcggccaagccgc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84764365 caggtgactctgacaagcggcacgccggcgactttgccctgtggaaggcggccaagccgc 84764306
Query: 715 aggagcccttctgggcctccccctggggaaacggaaggcctggctggcatattgaatgct 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84764305 aggagcccttctgggcctccccctggggaaacggaaggcctggctggcatattgaatgct 84764246
Query: 775 ccaccctctccag 787
|||||||||||||
Sbjct: 84764245 ccaccctctccag 84764233
Score = 228 bits (115), Expect = 5e-57
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 277 gctcctacgttagatttgacataattcggaggatcctgaccagggtctttgggtgcagcg 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 84775913 gctcctacgttagatttgacataattcggaggatcctgaccagggtctttgggtgcagtg 84775854
Query: 337 tcgtcatggtgatgggagtcacagacgtggacgataaaatcatcaaaagagccaacgag 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84775853 tcgtcatggtgatgggagtcacagacgtggacgataaaatcatcaaaagagccaacgag 84775795
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 466 aggttctccccccgacggtgtacatgagggtgacggaaaacatccctcagatagtcgcgt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84769460 aggttctccccccgacggtgtacatgagggtgacggaaaacatccctcagatagtcgcgt 84769401
Query: 526 tcatcgcagggatcatcgccagcgggcacgcttactccaccgcgagagg 574
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84769400 tcatcgcagggatcatcgccagcgggcacgcttactccaccgcgagagg 84769352
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 121 aagagtggctgcagcctgcgggctacgacacgggcgtcaaggtgtacaacagcctcaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84779655 aagagtggctgcagcctgcgggctacgacacgggcgtcaaggtgtacaacagcctcaccc 84779596
Query: 181 ggaggaaagaccccttgatcgtgagcagcgcggatgccgcctcttggta 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84779595 ggaggaaagaccccttgatcgtgagcagcgcggatgccgcctcttggta 84779547
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 572 aggcaacgtctacttcgacctgcagtcgcgaggcgccaagtacggcaagctggtcggcgt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84767046 aggcaacgtctacttcgacctgcagtcgcgaggcgccaagtacggcaagctggtcggcgt 84766987
Query: 632 ggtccccgatcccatgggagagccaggtg 660
|||||||||||||||||||||||||||||
Sbjct: 84766986 ggtccccgatcccatgggagagccaggtg 84766958
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 394 agttgaacgtgtcacccgcctcgctcgccaacctttatgaagaagattttaaacaagaca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84769615 agttgaacgtgtcacccgcctcgctcgccaacctttatgaagaagattttaaacaagaca 84769556
Query: 454 tggcggccttgaaggt 469
||||||||||||||||
Sbjct: 84769555 tggcggccttgaaggt 84769540
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 921 gggcatctgcacgtggagggcggggaggagaagatgtccaagtcgctcaggaattacgtc 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84758035 gggcatctgcacgtggagggcggggaggagaagatgtccaagtcgctcaggaattacgtc 84757976
Query: 981 accatcaagg 990
||||||||||
Sbjct: 84757975 accatcaagg 84757966
Score = 127 bits (64), Expect = 1e-26
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1 gttcggctggtgcgccggccatgctgcggacgcgcggagcccgtctgggctcccagctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84779775 gttcggctggtgcgccggccatgctgcggacgcgcggagcccgtctgggctcccagctcc 84779716
Query: 61 tccccgcc 68
| ||||||
Sbjct: 84779715 tgcccgcc 84779708
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 226 ggtatagctgtggaccaacagtctatgatcacgcacaccttggccatgcttg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84779207 ggtatagctgtggaccaacagtctatgatcacgcacaccttggccatgcttg 84779156
Score = 79.8 bits (40), Expect = 3e-12
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 1054 cagccgttgactacagtgacggcgccctcctccaggccaggcgcctgc 1101
|||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 84749254 cagccgttgactacagtgacggcgccatcctcgaggccaggcgcctgc 84749207
>gb|GL894930.2| Sus scrofa unplaced genomic scaffold ChrUScaf2814
Length = 42021
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 833 cctggcttttccgcaccacgagaacgaaatcgcccagtgtgaggccttccaccggtgccc 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cctggcttttccgcaccacgagaacgaaatcgcccagtgtgaggccttccaccggtgccc 704
Query: 893 acagtgggggaactacttc 911
|||||||||||||||||||
Sbjct: 705 acagtgggggaactacttc 723
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 921 gggcatctgcacgtggagggcggggaggagaagat 955
|||||||||||||||||||||||||||||||||||
Sbjct: 3090 gggcatctgcacgtggagggcggggaggagaagat 3124
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 785 cagcttggtgtttgggagtcggctggatatcca 817
|||||||||||||||||||||||||||||||||
Sbjct: 512 cagcttggtgtttgggagtcggctggatatcca 544
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,751,845
Number of extensions: 117
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 14
Length of query: 1101
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1080
Effective length of database: 2,808,413,156
Effective search space: 3033086208480
Effective search space used: 3033086208480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)