Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003047
(1428 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_875097.2| PREDICTED: similar to complement component 4A [... 733 0.0
Alignment gi|NP_001159957.1| complement C4 [Bos taurus]. 728 0.0
Alignment gi|NP_001035559.2| complement C3 preproprotein [Bos taurus]. 124 2e-28
Alignment gi|NP_001160088.1| complement C5a anaphylatoxin [Bos taurus]. 110 2e-24
Alignment gi|XP_002688886.1| PREDICTED: hemolytic complement-like [Bos ta... 96 8e-20
Alignment gi|XP_606449.5| PREDICTED: hemolytic complement-like [Bos tauru... 96 8e-20
Alignment gi|XP_002688595.1| PREDICTED: C3 and PZP-like, alpha-2-macroglo... 77 3e-14
Alignment gi|XP_609516.3| PREDICTED: C3 and PZP-like, alpha-2-macroglobul... 77 3e-14
Alignment gi|XP_002687891.1| PREDICTED: pregnancy-zone protein-like [Bos ... 54 3e-07
Alignment gi|XP_583329.4| PREDICTED: Alpha-2-macroglobulin-like, partial ... 54 3e-07
>ref|XP_875097.2| PREDICTED: similar to complement component 4A [Bos taurus].
Length = 1742
Score = 733 bits (1893), Expect = 0.0
Identities = 359/426 (84%), Positives = 381/426 (89%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEEK LNVTLSS+ R G KSHV++LTNHQV LEEELQFSLGSKINV+V GN
Sbjct: 1312 AYWIASHTTEEKGLNVTLSSLGRSGLKSHVLQLTNHQVHRLEEELQFSLGSKINVEVRGN 1371
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR+YNV+D+ NTTCQDLQIEVTV GHVEY +EA L A DDP A
Sbjct: 1372 SKGTLKVLRSYNVMDMTNTTCQDLQIEVTVMGHVEYTMEAEEDYQDYEYEDLLAGDDPEA 1431
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
HS+PVTPLQLFDGRRNRRRREAPK AEE+ESRVQYTVCIWR G+VGLSGMAIADITLLSG
Sbjct: 1432 HSRPVTPLQLFDGRRNRRRREAPKAAEERESRVQYTVCIWRTGKVGLSGMAIADITLLSG 1491
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFETEGPH+LLYFDSVPTSRECVGFGAVQEV +GLVQPAS
Sbjct: 1492 FHALRADLEKLTSLSDRYVSHFETEGPHILLYFDSVPTSRECVGFGAVQEVPVGLVQPAS 1551
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A+LYDYYNPEHKCSVFYGAP KSK LSTLCSADVCQCAEGKCPRQRRALERG QDL+GYR
Sbjct: 1552 AILYDYYNPEHKCSVFYGAPRKSKLLSTLCSADVCQCAEGKCPRQRRALERGQQDLEGYR 1611
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACYSPRVDY FQVKVLREDSRAAFRLFET ITQVLHFTKD +A A Q RNFLVRASC
Sbjct: 1612 MKFACYSPRVDYGFQVKVLREDSRAAFRLFETRITQVLHFTKDARATADQTRNFLVRASC 1671
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DLKGDPQYLLDSN WIEEMPSER+C+STRHR PCAQL F
Sbjct: 1672 RLQLEPGKEYLIMGLDGATYDLKGDPQYLLDSNSWIEEMPSERMCQSTRHRTPCAQLNSF 1731
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1732 LQEYGT 1737
>ref|NP_001159957.1| complement C4 [Bos taurus].
Length = 1741
Score = 728 bits (1880), Expect = 0.0
Identities = 357/426 (83%), Positives = 380/426 (89%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI S+T EEK LNVTLSS+ R G KSHV++LTNHQV LEEELQFSLGSKINV+V GN
Sbjct: 1311 AYWIASYTAEEKGLNVTLSSLGRSGLKSHVLQLTNHQVHRLEEELQFSLGSKINVEVRGN 1370
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR+YNV+D+ NTTCQDLQIEVTV GHVEY +EA L A DDP A
Sbjct: 1371 SKGTLKVLRSYNVMDMTNTTCQDLQIEVTVMGHVEYTMEAEEDYEDYEYEDLLAGDDPEA 1430
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
HS+PVTPLQLFDGRRNRRRREAPK AEE+ESRVQYTVCIWR G+VGLSGMAIADITLLSG
Sbjct: 1431 HSRPVTPLQLFDGRRNRRRREAPKAAEERESRVQYTVCIWRTGKVGLSGMAIADITLLSG 1490
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRY+SHFETEGPHVLLYFDSVPTSRECVGFGAVQEV +GLVQPAS
Sbjct: 1491 FHALRADLEKLTSLSDRYMSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVPVGLVQPAS 1550
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A+LYDYYNPEHKCSVFYGAP KSK LSTLCSADVCQCAEGKCPRQRRALERG QDL+GYR
Sbjct: 1551 AILYDYYNPEHKCSVFYGAPRKSKLLSTLCSADVCQCAEGKCPRQRRALERGQQDLEGYR 1610
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACYSPRVDY FQVKVLREDSRAAFRLFET ITQVLHFTKD +A A Q RNFLVRASC
Sbjct: 1611 MKFACYSPRVDYGFQVKVLREDSRAAFRLFETRITQVLHFTKDARATADQTRNFLVRASC 1670
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DLKGDPQYLLDSN WIEEMPSER+C+STRHR PCAQL F
Sbjct: 1671 RLQLEPGKEYLIMGLDGATYDLKGDPQYLLDSNSWIEEMPSERMCQSTRHRTPCAQLNSF 1730
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1731 LQEYGT 1736
>ref|NP_001035559.2| complement C3 preproprotein [Bos taurus].
Length = 1661
Score = 124 bits (312), Expect = 2e-28
Identities = 98/420 (23%), Positives = 173/420 (41%), Gaps = 7/420 (1%)
Frame = +2
Query: 29 EEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGNSKGTLKILR 208
+E L+V++ SR H + + + EE + + VK G +GTL ++
Sbjct: 1289 KELNLDVSIQLPSRNSAVRHRILWESASLLRSEETKE---NERFTVKAEGKGQGTLSVVT 1345
Query: 209 AYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHSQPVTPLQ 388
Y+ +C+ + V+++ PA
Sbjct: 1346 VYHAKLKGKVSCKKFDLRVSIR---------------------PAP-------------- 1370
Query: 389 LFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLE 568
E K ++ + + +C G + M+I DI++++GF + DL+
Sbjct: 1371 -----------ETVKKPQDAKGSMILDICTKYLGDQDAT-MSILDISMMTGFSPDVEDLK 1418
Query: 569 KLTSLSDRYVSHFETEGPH----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLY 733
L++ DRY+S +E +++Y D V T +C+ F Q +GL+QP + +Y
Sbjct: 1419 TLSTGVDRYISKYEMNRDSNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVGLIQPGAVKVY 1478
Query: 734 DYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFA 913
YYN + C FY + LS LC D C+CAE C E L+D R+ A
Sbjct: 1479 SYYNLDETCIRFYHPDKEDGMLSKLCHKDTCRCAEENCFMHHTEKEVTLED----RLDKA 1534
Query: 914 CYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--L 1087
C P VDY ++ +++++ F + I ++ D + Q R F+ CR L
Sbjct: 1535 C-EPGVDYVYKTRLIQKKLEDDFDEYIMVIENIIKSGSD-EVQVKQERKFISHIKCREAL 1592
Query: 1088 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1267
L+ G YL+ G+ K Y++ + W+E P C+ +++ C L +F +
Sbjct: 1593 KLKEGAHYLVWGVSSDLWGEKPKISYIIGKDTWVELWPEAEECQDEENQKQCEDLANFTE 1652
>ref|NP_001160088.1| complement C5a anaphylatoxin [Bos taurus].
Length = 1677
Score = 110 bits (276), Expect = 2e-24
Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
S A+ DI+L +G A DL+ L D+ ++ +E + HV+L +S+P++ CV F
Sbjct: 1417 SSHAVMDISLPTGVNANPEDLKALVEQVDQLLTDYEIKDGHVILQLNSIPSNEFLCVRFR 1476
Query: 680 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
++ +G + PA+ +Y+Y+ P+ +C++FY + L +C C+C E C + +
Sbjct: 1477 IIELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNTK--LQKVCEGVTCKCIEADCGQMQ 1534
Query: 860 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
L+ L R + AC P + YA++V+++ AF + ++ L K +A
Sbjct: 1535 AELD--LTISAATRKETAC-KPEIAYAYKVEIVAVTEENAFVKYTATL---LDIYKAGEA 1588
Query: 1040 AAAQAR--NFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPS 1204
AA + F+ + SC +LE K+YLIMG + H+ + Y LDS+ WIE P+
Sbjct: 1589 AAERDAEITFIKKTSCSNANLEKRKQYLIMGKEALQIKHNFRFKYVYPLDSSTWIEYWPT 1648
Query: 1205 ERLCRS 1222
+ C S
Sbjct: 1649 DSRCPS 1654
>ref|XP_002688886.1| PREDICTED: hemolytic complement-like [Bos taurus].
Length = 1618
Score = 95.9 bits (237), Expect = 8e-20
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
Frame = +2
Query: 509 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
M I +I+LL+GFY + DL++LTS +RY +ET+ V+LY + + + V G
Sbjct: 1356 MTIMEISLLTGFYPNQDDLKQLTSEVERYAFQYETKMNSSDSTVVLYLEKLSHKEDTVLG 1415
Query: 674 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 853
F + + +Q A +YDYY P +C+ FY P++ L +C DVC+CAE +CP
Sbjct: 1416 FRVHRMLKAEFLQAAQVTVYDYYEPSRRCTSFYNLPTEHASLRKICDKDVCRCAEEQCPS 1475
Query: 854 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLR-EDSRAAFRLFETSITQVLHFTKD 1030
++ Q+ ++ A VD+ ++ + E S + ++ Q + +
Sbjct: 1476 PKKDSNHLSQE----ELQTAACEAGVDFVYKASLESVETSDSNPYIYYNMKLQAIIKSGT 1531
Query: 1031 VKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPS 1204
A + F+ +C+ L L+ + YLIMG +K + ++L ++ P+
Sbjct: 1532 DSAKPLAVKKFVTHTTCQDSLGLQEHETYLIMGQISDLWRVKSEYIHVLGKETFLMHWPA 1591
>ref|XP_606449.5| PREDICTED: hemolytic complement-like [Bos taurus].
Length = 1618
Score = 95.9 bits (237), Expect = 8e-20
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
Frame = +2
Query: 509 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
M I +I+LL+GFY + DL++LTS +RY +ET+ V+LY + + + V G
Sbjct: 1356 MTIMEISLLTGFYPNQDDLKQLTSEVERYAFQYETKMNSSDSTVVLYLEKLSHKEDTVLG 1415
Query: 674 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 853
F + + +Q A +YDYY P +C+ FY P++ L +C DVC+CAE +CP
Sbjct: 1416 FRVHRMLKAEFLQAAQVTVYDYYEPSRRCTSFYNLPTEHASLRKICDKDVCRCAEEQCPS 1475
Query: 854 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLR-EDSRAAFRLFETSITQVLHFTKD 1030
++ Q+ ++ A VD+ ++ + E S + ++ Q + +
Sbjct: 1476 PKKDSNHLSQE----ELQTAACEAGVDFVYKASLESVETSDSNPYIYYNMKLQAIIKSGT 1531
Query: 1031 VKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPS 1204
A + F+ +C+ L L+ + YLIMG +K + ++L ++ P+
Sbjct: 1532 DSAKPLAVKKFVTHTTCQDSLGLQEHETYLIMGQISDLWRVKSEYIHVLGKETFLMHWPA 1591
>ref|XP_002688595.1| PREDICTED: C3 and PZP-like, alpha-2-macroglobulin domain containing 8
[Bos taurus].
Length = 1839
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Frame = +2
Query: 446 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 619
QE +V VC R G S MA+ ++ LLSGF A+ LE+L L D++V+ +E G
Sbjct: 1586 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRADVESLEQL--LLDKHVALKRYELAG 1642
Query: 620 PHVLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 796
VL YFD +P+ CV F A++E +G ++YDYY P + + FY ++S
Sbjct: 1643 RRVLFYFDEIPSRCLTCVQFRALREHVVGRTSALPILVYDYYEPAFEATRFYNVSARSPL 1702
Query: 797 LSTLCSADVCQCAEGKCPRQRRALERG 877
LC+ C E RAL +G
Sbjct: 1703 ARELCAGPACNEVE-------RALAQG 1722
>ref|XP_609516.3| PREDICTED: C3 and PZP-like, alpha-2-macroglobulin domain containing
8, partial [Bos taurus].
Length = 1863
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Frame = +2
Query: 446 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 619
QE +V VC R G S MA+ ++ LLSGF A+ LE+L L D++V+ +E G
Sbjct: 1610 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRADVESLEQL--LLDKHVALKRYELAG 1666
Query: 620 PHVLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 796
VL YFD +P+ CV F A++E +G ++YDYY P + + FY ++S
Sbjct: 1667 RRVLFYFDEIPSRCLTCVQFRALREHVVGRTSALPILVYDYYEPAFEATRFYNVSARSPL 1726
Query: 797 LSTLCSADVCQCAEGKCPRQRRALERG 877
LC+ C E RAL +G
Sbjct: 1727 ARELCAGPACNEVE-------RALAQG 1746
>ref|XP_002687891.1| PREDICTED: pregnancy-zone protein-like [Bos taurus].
Length = 1424
Score = 54.3 bits (129), Expect = 3e-07
Identities = 32/113 (28%), Positives = 54/113 (47%)
Frame = +2
Query: 455 RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 634
+VQ V I G+ S M I D+ ++SGF ++ + KL ++ + E HVL+
Sbjct: 1308 KVQIHVNISYTGERPSSNMVIVDVKMVSGFIPVKSSVRKLQEMAQ--IQRTEVSTNHVLI 1365
Query: 635 YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 793
YF+ + F Q++A+ ++PA+ YDYY E Y P ++
Sbjct: 1366 YFEELTHHILSFFFSVEQDIAVKNLKPATIKAYDYYETEEFTIEEYSVPCSAE 1418
>ref|XP_583329.4| PREDICTED: Alpha-2-macroglobulin-like, partial [Bos taurus].
Length = 999
Score = 54.3 bits (129), Expect = 3e-07
Identities = 32/113 (28%), Positives = 54/113 (47%)
Frame = +2
Query: 455 RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 634
+VQ V I G+ S M I D+ ++SGF ++ + KL ++ + E HVL+
Sbjct: 883 KVQIHVNISYTGERPSSNMVIVDVKMVSGFIPVKSSVRKLQEMAQ--IQRTEVSTNHVLI 940
Query: 635 YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 793
YF+ + F Q++A+ ++PA+ YDYY E Y P ++
Sbjct: 941 YFEELTHHILSFFFSVEQDIAVKNLKPATIKAYDYYETEEFTIEEYSVPCSAE 993
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,674,510
Number of extensions: 1969458
Number of successful extensions: 10890
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 10697
Number of HSP's successfully gapped: 12
Length of query: 476
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,174,046
Effective search space: 5244397020
Effective search space used: 5244397020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003047
(1428 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538843.2| PREDICTED: similar to Complement C4 precursor [... 712 0.0
Alignment gi|XP_855532.1| PREDICTED: similar to Complement C5 precursor [... 103 3e-22
Alignment gi|XP_533932.2| PREDICTED: similar to Complement C3 precursor [... 91 3e-18
Alignment gi|XP_852711.1| PREDICTED: similar to C3 and PZP-like, alpha-2-... 76 7e-14
Alignment gi|XP_534893.2| PREDICTED: similar to Alpha-2-macroglobulin pre... 54 5e-07
Alignment gi|XP_854216.1| PREDICTED: similar to Alpha-2-macroglobulin pre... 52 1e-06
Alignment gi|XP_542077.2| PREDICTED: similar to Complement C3 precursor [... 50 5e-06
Alignment gi|XP_854220.1| PREDICTED: similar to pregnancy-zone protein [C... 49 9e-06
>ref|XP_538843.2| PREDICTED: similar to Complement C4 precursor [Canis familiaris].
Length = 1587
Score = 712 bits (1838), Expect = 0.0
Identities = 352/428 (82%), Positives = 376/428 (87%), Gaps = 2/428 (0%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI+SHTT+E+ELNVTLSS+ R GFKSH ++L NHQV+GLEEELQFSLGSKINVKVGGN
Sbjct: 1155 AYWIVSHTTKERELNVTLSSIGRSGFKSHELQLNNHQVQGLEEELQFSLGSKINVKVGGN 1214
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLE--ANXXXXXXXXXXLPAQDDP 355
SKG LKILR YNV+DLKNTTC+DLQIEV+V GHVEY E AN +PA+DDP
Sbjct: 1215 SKGILKILRTYNVLDLKNTTCEDLQIEVSVVGHVEYTSEWEANEDYEDYVYEEVPAKDDP 1274
Query: 356 GAHSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLL 535
A SQ VTPL+LF+ RRNRRRREAPK EE+ESRVQYTVCIWRNG+VGLSGMAIADITLL
Sbjct: 1275 DASSQTVTPLELFERRRNRRRREAPKAPEEEESRVQYTVCIWRNGKVGLSGMAIADITLL 1334
Query: 536 SGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQP 715
SGF A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEV +GLVQP
Sbjct: 1335 SGFSALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVPVGLVQP 1394
Query: 716 ASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDG 895
ASA LYDYYNPEHKCSVFYGAP++SK LSTLCSADVCQCAEGKCPRQRRALERGLQD G
Sbjct: 1395 ASAALYDYYNPEHKCSVFYGAPTRSKLLSTLCSADVCQCAEGKCPRQRRALERGLQDEAG 1454
Query: 896 YRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRA 1075
YRM+FACY PRV Y FQVKVLRED RAAFRLFETSITQV+HFTKD KA Q RNFLVR
Sbjct: 1455 YRMRFACYYPRVQYGFQVKVLREDGRAAFRLFETSITQVIHFTKDTKAKVGQTRNFLVRD 1514
Query: 1076 SCRLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLR 1255
SCRL LEPGKEYLIMGLDG T DLKGDPQYLLDSN WIEEMPS+RLC+STRHR CAQL
Sbjct: 1515 SCRLRLEPGKEYLIMGLDGATSDLKGDPQYLLDSNSWIEEMPSKRLCQSTRHRAACAQLS 1574
Query: 1256 DFIQEYST 1279
DF+QEY T
Sbjct: 1575 DFLQEYGT 1582
>ref|XP_855532.1| PREDICTED: similar to Complement C5 precursor [Canis familiaris].
Length = 473
Score = 103 bits (258), Expect = 3e-22
Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 4/238 (1%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
S A+ DI+L +G A DL L D+ ++ ++ + HV+L DS+P+ CV F
Sbjct: 212 SSHAVMDISLPTGVSANIEDLRALVEGVDQLLTDYQIKDGHVILQLDSIPSDEFLCVRFR 271
Query: 680 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
+ +G + PA+ +Y+Y+ P+ +C++FY +PS SK L +C C+C E C + +
Sbjct: 272 IFELFQVGFLSPATFTVYEYHRPDKQCTMFY-SPSGSK-LQKVCEGVTCKCVEADCGQMQ 329
Query: 860 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
L+ L R + AC P + YA++V + F + ++ V + + A
Sbjct: 330 AELD--LTISADARKETAC-KPDIAYAYKVHITSITKENVFIKYTATLLDV-YKAGEAAA 385
Query: 1040 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPS 1204
F+ +A+C LE G+ YLIMG + H+ Y LDS+ WIE P+
Sbjct: 386 QKDSEITFIKKATCANAELEKGRHYLIMGKEALQIKHNFSFKYIYPLDSSTWIEYWPT 443
>ref|XP_533932.2| PREDICTED: similar to Complement C3 precursor [Canis familiaris].
Length = 1549
Score = 90.9 bits (224), Expect = 3e-18
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Frame = +2
Query: 509 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFE-----TEGPHVLLYFDSVPTSRE-CV 670
M+I DI++++GF + DL +L+S +RY+S +E + +V+LY + + ++E C+
Sbjct: 1401 MSILDISMMTGFSPDTCDLNQLSSGIERYISKYELNKAFSNKNNVILYLEKISHNQEDCI 1460
Query: 671 GFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCP 850
F Q +GL+QP S +Y YYN + C+ FY + LS LC D+C+CAE C
Sbjct: 1461 SFRVHQYFKVGLIQPGSVKVYSYYNLDESCTRFYHPEKEDGQLSKLCHKDMCRCAEENCF 1520
Query: 851 RQRRALERGLQDLDGYRMKFACYSPRVDYAFQ 946
Q + ++ +D R+ AC P VDY Q
Sbjct: 1521 MQ-QVYDKVTKD---ERLDKAC-EPGVDYGTQ 1547
>ref|XP_852711.1| PREDICTED: similar to C3 and PZP-like, alpha-2-macroglobulin domain
containing 8 [Canis familiaris].
Length = 1746
Score = 76.3 bits (186), Expect = 7e-14
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Frame = +2
Query: 443 EQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGP 622
+QE +V VC R G S MA+ ++ LLSGF + LE+L + +E G
Sbjct: 1537 QQEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRVDIESLEQLLFDKHFTLKRYEVAGR 1595
Query: 623 HVLLYFDSVPTS-RECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFL 799
VL YFD +P+ CV F A++E +G +YDYY P + + FY S+S
Sbjct: 1596 RVLFYFDEIPSRCLTCVRFRALREHVVGRTSALPVSVYDYYEPAFEATRFYNVSSRSPLA 1655
Query: 800 STLCSADVCQCAEGKCPRQ 856
LC+ C E + P Q
Sbjct: 1656 RELCAGPACNEVE-RAPAQ 1673
>ref|XP_534893.2| PREDICTED: similar to Alpha-2-macroglobulin precursor (Alpha-2-M)
[Canis familiaris].
Length = 2036
Score = 53.5 bits (127), Expect = 5e-07
Identities = 30/93 (32%), Positives = 46/93 (49%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 682
S M I D+ ++SGF + ++ L S +VS E HVL+Y D V + F
Sbjct: 1938 SNMVITDVKMVSGFIPLKPTVKMLERSS--HVSRTEVSNNHVLIYLDKVTNQTLSLSFMV 1995
Query: 683 VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 781
+Q+V + ++PA +YDYY + Y AP
Sbjct: 1996 LQDVPVRDLKPAIVKVYDYYETDEFAIAEYNAP 2028
>ref|XP_854216.1| PREDICTED: similar to Alpha-2-macroglobulin precursor (Alpha-2-M)
[Canis familiaris].
Length = 1699
Score = 52.0 bits (123), Expect = 1e-06
Identities = 31/96 (32%), Positives = 46/96 (47%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 682
S M + D+ +LSGF A +EKL + + V E + HVL Y ++V + F
Sbjct: 1603 SNMVLVDVKMLSGFTPVMASIEKLEN--NGQVMKTEVKNDHVLFYLETVFGTANHFTFSV 1660
Query: 683 VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
Q + +QPA ++YDYY + V Y S S
Sbjct: 1661 EQTNLVSNIQPAPVMVYDYYEKDEYALVSYNINSVS 1696
>ref|XP_542077.2| PREDICTED: similar to Complement C3 precursor [Canis familiaris].
Length = 1877
Score = 50.1 bits (118), Expect = 5e-06
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +2
Query: 509 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
M+I +++LL+GFY + DL++LTS + Y +ET+ V+LY + + + V G
Sbjct: 1305 MSIIEVSLLTGFYPNQNDLKQLTSDVEMYAFQYETKTSSSDSTVVLYLEKLSHKEDTVLG 1364
Query: 674 FGAVQEVAIGLVQPASAVLYDYYNP 748
F + + +Q A +YDYY P
Sbjct: 1365 FRVHRMLQAEFLQAAQVTIYDYYEP 1389
>ref|XP_854220.1| PREDICTED: similar to pregnancy-zone protein [Canis familiaris].
Length = 1506
Score = 49.3 bits (116), Expect = 9e-06
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +2
Query: 455 RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 634
+ Q + I G+ S M I D+ ++SGF ++ + KL + E HVL+
Sbjct: 1381 KFQIHINISYTGERSSSNMVIVDVKMVSGFIPVKSSVRKLQEKPQ--IQRTEVSTNHVLI 1438
Query: 635 YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYY 742
YF+ + F Q++ + ++PA+ YDYY
Sbjct: 1439 YFEELTNQTLSFSFSVEQDIQVDNLKPATVKAYDYY 1474
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,164,223
Number of extensions: 2027779
Number of successful extensions: 10937
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10692
Number of HSP's successfully gapped: 8
Length of query: 476
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 369
Effective length of database: 15,307,552
Effective search space: 5648486688
Effective search space used: 5648486688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003047
(1428 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403643.1| PREDICTED: complement C4-A isoform 1 [Homo s... 729 0.0
Alignment gi|NP_001002029.3| complement C4-B preproprotein [Homo sapiens]. 729 0.0
Alignment gi|NP_001229752.1| complement C4-B-like preproprotein [Homo sap... 729 0.0
Alignment gi|NP_009224.2| complement C4-A preproprotein [Homo sapiens]. 729 0.0
Alignment gi|XP_003403644.1| PREDICTED: complement C4-A isoform 2 [Homo s... 627 e-180
Alignment gi|NP_000055.2| complement C3 precursor [Homo sapiens]. 125 1e-28
Alignment gi|NP_001726.2| complement C5 preproprotein [Homo sapiens]. 99 1e-20
Alignment gi|NP_056507.2| C3 and PZP-like alpha-2-macroglobulin domain-co... 76 7e-14
Alignment gi|NP_001153060.1| CD109 antigen isoform 3 precursor [Homo sapi... 57 4e-08
Alignment gi|NP_001153059.1| CD109 antigen isoform 2 precursor [Homo sapi... 57 4e-08
>ref|XP_003403643.1| PREDICTED: complement C4-A isoform 1 [Homo sapiens].
Length = 1744
Score = 729 bits (1881), Expect = 0.0
Identities = 357/426 (83%), Positives = 380/426 (89%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEE+ LNVTLSS R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1734 LQEYGT 1739
>ref|NP_001002029.3| complement C4-B preproprotein [Homo sapiens].
Length = 1744
Score = 729 bits (1881), Expect = 0.0
Identities = 357/426 (83%), Positives = 380/426 (89%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEE+ LNVTLSS R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1734 LQEYGT 1739
>ref|NP_001229752.1| complement C4-B-like preproprotein [Homo sapiens].
Length = 1744
Score = 729 bits (1881), Expect = 0.0
Identities = 357/426 (83%), Positives = 380/426 (89%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEE+ LNVTLSS R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1734 LQEYGT 1739
>ref|NP_009224.2| complement C4-A preproprotein [Homo sapiens].
Length = 1744
Score = 729 bits (1881), Expect = 0.0
Identities = 357/426 (83%), Positives = 380/426 (89%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEE+ LNVTLSS R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1734 LQEYGT 1739
>ref|XP_003403644.1| PREDICTED: complement C4-A isoform 2 [Homo sapiens].
Length = 1698
Score = 627 bits (1618), Expect = e-180
Identities = 317/426 (74%), Positives = 337/426 (79%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEE+ LNVTLSS R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRRNRRRREAP
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAP------------------------------------- 1456
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
KLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1457 ---------KLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1507
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1508 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1567
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1568 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1627
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R CAQL DF
Sbjct: 1628 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1687
Query: 1262 IQEYST 1279
+QEY T
Sbjct: 1688 LQEYGT 1693
>ref|NP_000055.2| complement C3 precursor [Homo sapiens].
Length = 1663
Score = 125 bits (314), Expect = 1e-28
Identities = 102/421 (24%), Positives = 178/421 (42%), Gaps = 8/421 (1%)
Frame = +2
Query: 29 EEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGNSKGTLKILR 208
+E L+V+L SR +H + + + EE + V G +GTL ++
Sbjct: 1290 QELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKE---NEGFTVTAEGKGQGTLSVVT 1346
Query: 209 AYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHSQPVTPLQ 388
Y+ TC ++VT+K PA
Sbjct: 1347 MYHAKAKDQLTCNKFDLKVTIK---------------------PAP-------------- 1371
Query: 389 LFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLE 568
E K ++ ++ + +C G + M+I DI++++GF + DL+
Sbjct: 1372 -----------ETEKRPQDAKNTMILEICTRYRGDQDAT-MSILDISMMTGFAPDTDDLK 1419
Query: 569 KLTSLSDRYVSHFETEGPH-----VLLYFDSVPTSRE-CVGFGAVQEVAIGLVQPASAVL 730
+L + DRY+S +E + +++Y D V S + C+ F Q + L+QP + +
Sbjct: 1420 QLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKV 1479
Query: 731 YDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKF 910
Y YYN E C+ FY + L+ LC ++C+CAE C Q+ + L++ R+
Sbjct: 1480 YAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEE----RLDK 1535
Query: 911 ACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR-- 1084
AC P VDY ++ ++++ F + +I Q + D + Q R F+ CR
Sbjct: 1536 AC-EPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSD-EVQVGQQRTFISPIKCREA 1593
Query: 1085 LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFI 1264
L LE K YL+ GL K + Y++ + W+E P E C+ +++ C L F
Sbjct: 1594 LKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFT 1653
Query: 1265 Q 1267
+
Sbjct: 1654 E 1654
>ref|NP_001726.2| complement C5 preproprotein [Homo sapiens].
Length = 1676
Score = 98.6 bits (244), Expect = 1e-20
Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
S A+ DI+L +G A DL+ L D+ + ++ + HV+L +S+P+S CV F
Sbjct: 1419 SSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFR 1478
Query: 680 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
+ +G + PA+ +Y+Y+ P+ +C++FY + + +C C+C E C + +
Sbjct: 1479 IFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIK--IQKVCEGAACKCVEADCGQMQ 1536
Query: 860 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
L+ L R + AC P + YA++V + F ++ ++ + + T + A
Sbjct: 1537 EELD--LTISAETRKQTAC-KPEIAYAYKVSITSITVENVFVKYKATLLDI-YKTGEAVA 1592
Query: 1040 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDGTTHDLKGDPQYL--LDSNCWIEEMPSER 1210
F+ + +C L G++YLIMG + +Y+ LDS WIE P +
Sbjct: 1593 EKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDT 1652
Query: 1211 LCRS 1222
C S
Sbjct: 1653 TCSS 1656
>ref|NP_056507.2| C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8
[Homo sapiens].
Length = 1932
Score = 76.3 bits (186), Expect = 7e-14
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +2
Query: 446 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPH 625
QE +V VC R G S MA+ ++ LLSGF A+ LE+L + +E G
Sbjct: 1598 QEYKVMLEVCT-RWLHAGSSNMAVLEVPLLSGFRADIESLEQLLLDKHMGMKRYEVAGRR 1656
Query: 626 VLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLS 802
VL YFD +P+ CV F A++E +G +YDYY P + + FY + S
Sbjct: 1657 VLFYFDEIPSRCLTCVRFRALRECVVGRTSALPVSVYDYYEPAFEATRFYNVSTHSPLAR 1716
Query: 803 TLCSADVCQCAE 838
LC+ C E
Sbjct: 1717 ELCAGPACNEVE 1728
>ref|NP_001153060.1| CD109 antigen isoform 3 precursor [Homo sapiens].
Length = 1368
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/142 (31%), Positives = 65/142 (45%)
Frame = +2
Query: 425 APKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSH 604
A K ++ + V VC +G G SGMA+ ++ LLSGF + SLS+ V
Sbjct: 1209 AVKENKDDLNHVDLNVCTSFSGP-GRSGMALMEVNLLSGFMVP----SEAISLSET-VKK 1262
Query: 605 FETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPS 784
E + + LY DSV ++ CV AV+ + Q AS + DYY P + Y +
Sbjct: 1263 VEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEV 1322
Query: 785 KSKFLSTLCSADVCQCAEGKCP 850
K L S D+C +G P
Sbjct: 1323 K------LSSCDLCSDVQGCRP 1338
>ref|NP_001153059.1| CD109 antigen isoform 2 precursor [Homo sapiens].
Length = 1428
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/142 (31%), Positives = 65/142 (45%)
Frame = +2
Query: 425 APKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSH 604
A K ++ + V VC +G G SGMA+ ++ LLSGF + SLS+ V
Sbjct: 1269 AVKENKDDLNHVDLNVCTSFSGP-GRSGMALMEVNLLSGFMVP----SEAISLSET-VKK 1322
Query: 605 FETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPS 784
E + + LY DSV ++ CV AV+ + Q AS + DYY P + Y +
Sbjct: 1323 VEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEV 1382
Query: 785 KSKFLSTLCSADVCQCAEGKCP 850
K L S D+C +G P
Sbjct: 1383 K------LSSCDLCSDVQGCRP 1398
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,672,154
Number of extensions: 1955686
Number of successful extensions: 10418
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 10230
Number of HSP's successfully gapped: 16
Length of query: 476
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,802,980
Effective search space: 5477102600
Effective search space used: 5477102600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003047
(1428 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033910.2| complement C4-B precursor [Mus musculus]. 664 0.0
Alignment gi|XP_978162.1| PREDICTED: complement C4-B-like isoform 5 [Mus ... 663 0.0
Alignment gi|NP_035543.2| sex-limited protein [Mus musculus]. 650 0.0
Alignment gi|NP_033908.2| complement C3 [Mus musculus]. 139 5e-33
Alignment gi|XP_003086840.1| PREDICTED: complement C3-like, partial [Mus ... 116 4e-26
Alignment gi|NP_034536.1| complement C5 preproprotein [Mus musculus]. 97 4e-20
Alignment gi|NP_032672.2| murinoglobulin-2 precursor [Mus musculus]. 58 2e-08
Alignment gi|NP_032671.2| murinoglobulin-1 precursor [Mus musculus]. 56 8e-08
Alignment gi|XP_001480324.2| PREDICTED: murinoglobulin-1-like [Mus muscul... 54 4e-07
Alignment gi|XP_922625.4| PREDICTED: murinoglobulin-1-like [Mus musculus]. 54 4e-07
>ref|NP_033910.2| complement C4-B precursor [Mus musculus].
Length = 1738
Score = 664 bits (1714), Expect = 0.0
Identities = 325/426 (76%), Positives = 362/426 (84%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEEK LNVTLSSM R G K+H + L NHQVKGLEEEL+FSLGS I+VKV GN
Sbjct: 1310 AYWIASHTTEEKALNVTLSSMGRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGN 1369
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLKILR YNV+D+KNTTCQDLQIEV V G VEY +AN +PA DDP
Sbjct: 1370 SKGTLKILRTYNVLDMKNTTCQDLQIEVKVTGAVEYAWDANEDYEDYYD--MPAADDPSV 1427
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRR+RRRREAPKV EEQESRVQYTVCIWRNG++GLSGMAIADITLLSG
Sbjct: 1428 PLQPVTPLQLFEGRRSRRRREAPKVVEEQESRVQYTVCIWRNGKLGLSGMAIADITLLSG 1487
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQP+S
Sbjct: 1488 FHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPSS 1547
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
AVLYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR R+LER ++D DGYR
Sbjct: 1548 AVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYR 1607
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
M+FACY PRV+Y F VKVLRED RAAFRLFE+ ITQVLHF KD A+ Q RNFL RASC
Sbjct: 1608 MRFACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASC 1667
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR C QL+DF
Sbjct: 1668 RLRLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDF 1727
Query: 1262 IQEYST 1279
+ E+S+
Sbjct: 1728 LMEFSS 1733
>ref|XP_978162.1| PREDICTED: complement C4-B-like isoform 5 [Mus musculus].
Length = 1738
Score = 663 bits (1711), Expect = 0.0
Identities = 324/426 (76%), Positives = 362/426 (84%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEEK LNVTLSSM R G K+H + L NHQVKGLEEEL+FSLGS I+VKV GN
Sbjct: 1310 AYWIASHTTEEKALNVTLSSMGRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGN 1369
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLKILR YNV+D+KNTTCQDLQIEV V G VEY +AN +PA DDP
Sbjct: 1370 SKGTLKILRTYNVLDMKNTTCQDLQIEVKVTGAVEYAWDANEDYEDYYD--MPAADDPSV 1427
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GR++RRRREAPKV EEQESRVQYTVCIWRNG++GLSGMAIADITLLSG
Sbjct: 1428 PLQPVTPLQLFEGRKSRRRREAPKVVEEQESRVQYTVCIWRNGKLGLSGMAIADITLLSG 1487
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQP+S
Sbjct: 1488 FHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPSS 1547
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
AVLYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR R+LER ++D DGYR
Sbjct: 1548 AVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYR 1607
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
M+FACY PRV+Y F VKVLRED RAAFRLFE+ ITQVLHF KD A+ Q RNFL RASC
Sbjct: 1608 MRFACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASC 1667
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR C QL+DF
Sbjct: 1668 RLRLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDF 1727
Query: 1262 IQEYST 1279
+ E+S+
Sbjct: 1728 LMEFSS 1733
>ref|NP_035543.2| sex-limited protein [Mus musculus].
Length = 1735
Score = 650 bits (1677), Expect = 0.0
Identities = 320/426 (75%), Positives = 357/426 (83%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWI SHTTEEK LNVTLSSM R G K+H + L NHQVKGLEEEL+FSLGS I+VKV GN
Sbjct: 1307 AYWIASHTTEEKALNVTLSSMGRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGN 1366
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLKILR YNV+D+KNTTCQDLQIEV V VEY A +PA DDP
Sbjct: 1367 SKGTLKILRTYNVLDMKNTTCQDLQIEVKVTDAVEYAWSA--YEDYEDDYNMPATDDPSV 1424
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
QPVTPLQLF+GRR+RRRREAPKVAEE+ESRV YTVCIWRNG++GLSGMAIADITLLSG
Sbjct: 1425 PLQPVTPLQLFEGRRSRRRREAPKVAEERESRVHYTVCIWRNGKLGLSGMAIADITLLSG 1484
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
F+A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQPAS
Sbjct: 1485 FHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPAS 1544
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
AVLYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR R+LER ++D DGYR
Sbjct: 1545 AVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYR 1604
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
M+FACY +V+Y F VKVLRED RAAFRLFE+ ITQVLHF D A+ Q RNFL RASC
Sbjct: 1605 MRFACYYHQVEYGFTVKVLREDGRAAFRLFESKITQVLHFRTDTMASIGQTRNFLSRASC 1664
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RL LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR C QL+DF
Sbjct: 1665 RLRLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDF 1724
Query: 1262 IQEYST 1279
+ E+S+
Sbjct: 1725 LMEFSS 1730
>ref|NP_033908.2| complement C3 [Mus musculus].
Length = 1663
Score = 139 bits (350), Expect = 5e-33
Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 8/290 (2%)
Frame = +2
Query: 422 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 601
E K EE ++ + +C G V + M+I DI++++GF + DLE L S DRY+S
Sbjct: 1372 ETAKKPEEAKNTMFLEICTKYLGDVDAT-MSILDISMMTGFAPDTKDLELLASGVDRYIS 1430
Query: 602 HFETEGPH-----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 763
+E +++Y + + T +C+ F Q +GL+QP S +Y YYN E C+
Sbjct: 1431 KYEMNKAFSNKNTLIIYLEKISHTEEDCLTFKVHQYFNVGLIQPGSVKVYSYYNLEESCT 1490
Query: 764 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 943
FY LS LC +++C+CAE C Q+ + L R+ AC P VDY +
Sbjct: 1491 RFYHPEKDDGMLSKLCHSEMCRCAEENCFMQQSQEKINL----NVRLDKAC-EPGVDYVY 1545
Query: 944 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 1117
+ ++ + F + +I QV+ D + A Q R F+ CR L L+ GK+YL+
Sbjct: 1546 KTELTNIELLDDFDEYTMTIQQVIKSGSD-EVQAGQQRKFISHIKCRNALKLQKGKKYLM 1604
Query: 1118 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1267
GL K + Y++ + W+E P C+ ++++ C +L F +
Sbjct: 1605 WGLSSDLWGEKPNTSYIIGKDTWVEHWPEAEECQDQKYQKQCEELGAFTE 1654
>ref|XP_003086840.1| PREDICTED: complement C3-like, partial [Mus musculus].
Length = 1524
Score = 116 bits (291), Expect = 4e-26
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 8/253 (3%)
Frame = +2
Query: 422 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 601
E K EE ++ + +C G V + M+I DI++++GF + DLE L S DRY+S
Sbjct: 1281 ETAKKPEEAKNTMFLEICTKYLGDVDAT-MSILDISMMTGFAPDTKDLELLASGVDRYIS 1339
Query: 602 HFETEGPH-----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 763
+E +++Y + + T +C+ F Q +GL+QP S +Y YYN E C+
Sbjct: 1340 KYEMNKAFSNKNTLIIYLEKISHTEEDCLTFKVHQYFNVGLIQPGSVKVYSYYNLEESCT 1399
Query: 764 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 943
FY LS LC +++C+CAE C Q+ + L R+ AC P VDY +
Sbjct: 1400 RFYHPEKDDGMLSKLCHSEMCRCAEENCFMQQSQEKINL----NVRLDKAC-EPGVDYVY 1454
Query: 944 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 1117
+ ++ F + +I QV+ D + A Q R F+ CR L L+ GK+YL+
Sbjct: 1455 KTELTNIKLLDDFDEYTMTIQQVIKSGSD-EVQAGQQRKFISHIKCRNALKLQKGKKYLM 1513
Query: 1118 MGLDGTTHDLKGD 1156
GL + DL G+
Sbjct: 1514 WGL---SSDLWGE 1523
>ref|NP_034536.1| complement C5 preproprotein [Mus musculus].
Length = 1680
Score = 96.7 bits (239), Expect = 4e-20
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 5/245 (2%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE--CVGF 676
S A+ DI+L +G A DL L D+ ++ ++ + HV+L +S+P SR+ CV F
Sbjct: 1423 SSHAVMDISLPTGIGANEEDLRALVEGVDQLLTDYQIKDGHVILQLNSIP-SRDFLCVRF 1481
Query: 677 GAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQ 856
+ +G + PA+ +Y+Y+ P+ +C++ Y L +C C C E C +
Sbjct: 1482 RIFELFQVGFLNPATFTVYEYHRPDKQCTMIYSISDTR--LQKVCEGAACTCVEADCAQL 1539
Query: 857 RRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVK 1036
+ ++ + R + AC P YA++V++ F + + T ++ +
Sbjct: 1540 QAEVDLAIS--ADSRKEKAC-KPETAYAYKVRITSATEENVF--VKYTATLLVTYKTGEA 1594
Query: 1037 AAAAQARNFLVRASC-RLHLEPGKEYLIMGLD--GTTHDLKGDPQYLLDSNCWIEEMPSE 1207
A F+ + SC +L GK+YLIMG + H+ Y LDS+ WIE P++
Sbjct: 1595 ADENSEVTFIKKMSCTNANLVKGKQYLIMGKEVLQIKHNFSFKYIYPLDSSTWIEYWPTD 1654
Query: 1208 RLCRS 1222
C S
Sbjct: 1655 TTCPS 1659
>ref|NP_032672.2| murinoglobulin-2 precursor [Mus musculus].
Length = 1451
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/110 (31%), Positives = 53/110 (48%)
Frame = +2
Query: 461 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
Q ++ I G S M IAD+ +LSGF + ++KL L ++S E +VLLY
Sbjct: 1339 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLE--HISRTEVSNNNVLLYL 1396
Query: 641 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
D V F Q++++ +QPA +YDYY + Y +P S
Sbjct: 1397 DQVTNQTLAFSFIIQQDISVRNLQPAIVKVYDYYETDEVAYAEYSSPCSS 1446
>ref|NP_032671.2| murinoglobulin-1 precursor [Mus musculus].
Length = 1476
Score = 55.8 bits (133), Expect = 8e-08
Identities = 34/107 (31%), Positives = 51/107 (47%)
Frame = +2
Query: 461 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
Q ++ I G S M IAD+ +LSGF + ++KL L +VS E +VL+Y
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLE--HVSRTEVSNNNVLIYL 1421
Query: 641 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 781
D V F Q++ + +QPA +YDYY + Y +P
Sbjct: 1422 DQVTNQTLAFSFIIQQDIPVRNLQPAIVKVYDYYETDEMAFAEYSSP 1468
>ref|XP_001480324.2| PREDICTED: murinoglobulin-1-like [Mus musculus].
Length = 1472
Score = 53.5 bits (127), Expect = 4e-07
Identities = 35/110 (31%), Positives = 52/110 (47%)
Frame = +2
Query: 461 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
Q ++ I G S M IAD+ +LSGF + ++KL SL+ V E +VLLY
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLESLAP--VRRTEVSSNNVLLYL 1421
Query: 641 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
D V + F Q+ + +QPA +YDYY + Y P ++
Sbjct: 1422 DQVNSHTLAFSFIIQQDFLVRNLQPAMVKVYDYYETDEVAFAEYSNPCRT 1471
>ref|XP_922625.4| PREDICTED: murinoglobulin-1-like [Mus musculus].
Length = 1472
Score = 53.5 bits (127), Expect = 4e-07
Identities = 35/110 (31%), Positives = 52/110 (47%)
Frame = +2
Query: 461 QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
Q ++ I G S M IAD+ +LSGF + ++KL SL+ V E +VLLY
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLESLAP--VRRTEVSSNNVLLYL 1421
Query: 641 DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
D V + F Q+ + +QPA +YDYY + Y P ++
Sbjct: 1422 DQVNSHTLAFSFIIQQDFLVRNLQPAMVKVYDYYETDEVAFAEYSNPCRT 1471
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,007,626
Number of extensions: 1605481
Number of successful extensions: 7791
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7593
Number of HSP's successfully gapped: 11
Length of query: 476
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 371
Effective length of database: 12,463,779
Effective search space: 4624062009
Effective search space used: 4624062009
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003047
(1428 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116561.1| complement C4 [Sus scrofa]. 838 0.0
Alignment gi|NP_999174.1| complement C3 [Sus scrofa]. 130 2e-30
Alignment gi|NP_001001646.1| complement C5 [Sus scrofa]. 109 4e-24
Alignment gi|XP_003354119.1| PREDICTED: complement C3-like [Sus scrofa]. 100 2e-21
Alignment gi|XP_003123534.2| PREDICTED: c3 and PZP-like alpha-2-macroglob... 74 3e-13
Alignment gi|XP_001925210.2| PREDICTED: alpha-2-macroglobulin [Sus scrofa]. 54 2e-07
Alignment gi|XP_001925235.3| PREDICTED: LOW QUALITY PROTEIN: alpha-2-macr... 54 3e-07
Alignment gi|XP_003355629.1| PREDICTED: ovostatin homolog 2-like, partial... 50 2e-06
Alignment gi|XP_001927580.2| PREDICTED: CD109 antigen isoform 1 [Sus scro... 50 3e-06
>ref|NP_001116561.1| complement C4 [Sus scrofa].
Length = 1741
Score = 838 bits (2165), Expect = 0.0
Identities = 415/426 (97%), Positives = 416/426 (97%)
Frame = +2
Query: 2 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN
Sbjct: 1311 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 1370
Query: 182 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEAN LPAQDDPGA
Sbjct: 1371 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANEDYEDYEYEDLPAQDDPGA 1430
Query: 362 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG
Sbjct: 1431 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 1490
Query: 542 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS
Sbjct: 1491 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 1550
Query: 722 AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
AVLY+YYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR
Sbjct: 1551 AVLYEYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 1610
Query: 902 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC
Sbjct: 1611 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1670
Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF
Sbjct: 1671 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1730
Query: 1262 IQEYST 1279
IQEYST
Sbjct: 1731 IQEYST 1736
>ref|NP_999174.1| complement C3 [Sus scrofa].
Length = 1661
Score = 130 bits (327), Expect = 2e-30
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 8/288 (2%)
Frame = +2
Query: 422 EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 601
E K +E +S + +C G + M+I DI++++GF + DL+ L++ DRY+S
Sbjct: 1370 EPVKKPQEAKSSMVLDICTRYLGNQDAT-MSILDISMMTGFSPDTEDLKLLSTGVDRYIS 1428
Query: 602 HFE-----TEGPHVLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 763
+E + +++Y D + T +C+ F Q +GL+QP S +Y YYN + C+
Sbjct: 1429 KYELNKALSNKNTLIIYLDKISHTLEDCISFKVHQYFNVGLIQPGSVKVYSYYNLDESCT 1488
Query: 764 VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 943
FY + L+ LC ++C+CAE C E L D R++ AC P VDY +
Sbjct: 1489 RFYHPEKEDGMLNKLCHKEMCRCAEENCFMHHDEEEVTLDD----RLERAC-EPGVDYVY 1543
Query: 944 QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 1117
+ ++L+++ F + I Q++ D + Q R F+ CR L L+ G YL+
Sbjct: 1544 KTRLLKKELSDDFDDYIMVIEQIIKSGSD-EVQVGQERRFISHIKCREALKLKEGGHYLV 1602
Query: 1118 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
G+ K + Y++ + W+E P +C+ +++ C L +F
Sbjct: 1603 WGVSSDLWGEKPNISYIIGKDTWVELWPDGDVCQDEENQKQCQDLANF 1650
>ref|NP_001001646.1| complement C5 [Sus scrofa].
Length = 1677
Score = 109 bits (272), Expect = 4e-24
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 4/244 (1%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
S A+ DI+L +G A DL L D+ ++ +E + HV+ +S+P++ CV F
Sbjct: 1417 SSHAVMDISLPTGVNANAEDLRALVEGVDQLLTDYEIKDGHVICQLNSIPSNNFLCVRFR 1476
Query: 680 AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
V+ +G + PA+ +Y+Y+ P+ +C++FY + S++K L +C C+C E R +
Sbjct: 1477 IVELFQVGFLSPATFTVYEYHRPDKQCTMFY-SMSQTK-LQKVCEGVTCKCVE--ADRGQ 1532
Query: 860 RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
E L R + AC P + Y ++VK++ +AF + S+ V + V
Sbjct: 1533 MQTEVDLTISVNTRKETAC-KPEIAYVYKVKIIAMTEESAFVKYTASLLDVYKAGEAVAE 1591
Query: 1040 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPSER 1210
++ F+ + +C +LE GK+YLIMG + H+ Y LDS+ WIE P++
Sbjct: 1592 KGSEI-TFIKKTTCTNANLEKGKQYLIMGKEALQIKHNFNFKYIYPLDSSTWIEYWPTDT 1650
Query: 1211 LCRS 1222
C S
Sbjct: 1651 ACPS 1654
>ref|XP_003354119.1| PREDICTED: complement C3-like [Sus scrofa].
Length = 1525
Score = 100 bits (250), Expect = 2e-21
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 9/242 (3%)
Frame = +2
Query: 509 MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
M I +++LL+GFY + DL++LTS +RY +ET+ V+LY + + + V G
Sbjct: 1263 MTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLG 1322
Query: 674 FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 853
F + + +Q A +YDYY P +CS FY P++ L +C DVC+CAE +CP
Sbjct: 1323 FRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPS 1382
Query: 854 QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKV--LREDSRAAFRLFETSITQVLHFTK 1027
++ Q+ ++ A VD+ ++ ++ + + + + + ++
Sbjct: 1383 PKKDSNHVRQE----ELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGT 1438
Query: 1028 DVKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMP 1201
D + + F+ +C L LE + YLIMG +K + ++L ++ P
Sbjct: 1439 D-SVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWP 1497
Query: 1202 SE 1207
+E
Sbjct: 1498 AE 1499
>ref|XP_003123534.2| PREDICTED: c3 and PZP-like alpha-2-macroglobulin domain-containing
protein 8 [Sus scrofa].
Length = 1907
Score = 73.6 bits (179), Expect = 3e-13
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Frame = +2
Query: 446 QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 619
QE +V VC R G S MA+ ++ LLSGF + LE+L L DR+ S +E G
Sbjct: 1586 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRVDVESLEQL--LLDRHFSLKRYEVAG 1642
Query: 620 PHVLLYFDSVPTS-RECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 796
VL YFD +P+ C+ F A++E +G +YDYY P + + FY + S
Sbjct: 1643 RRVLFYFDEIPSQCLTCIRFRALREHVVGRTSALPISVYDYYEPAFEATRFYNVSAHSPL 1702
Query: 797 LSTLCSADVCQCAEGKCPRQRRALERG 877
LC+ C E RAL +G
Sbjct: 1703 AWELCAGPACNEVE-------RALAQG 1722
>ref|XP_001925210.2| PREDICTED: alpha-2-macroglobulin [Sus scrofa].
Length = 1490
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/119 (26%), Positives = 55/119 (46%)
Frame = +2
Query: 437 AEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE 616
A + +VQ + I G+ S M I D+ ++SGF ++ ++KL + E
Sbjct: 1368 AVDAHRKVQIHINISYTGERPSSNMVIVDVKMVSGFIPVKSSVKKLQERPQ--IQRTEVN 1425
Query: 617 GPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 793
HVL+YF+ + + F Q++ + ++PA+ YDYY E Y P ++
Sbjct: 1426 VNHVLIYFEELTSEVLSFSFSVEQDIQVKNLKPATVKAYDYYETEEFAIEEYSVPCSAE 1484
>ref|XP_001925235.3| PREDICTED: LOW QUALITY PROTEIN: alpha-2-macroglobulin [Sus scrofa].
Length = 1476
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +2
Query: 428 PKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHF 607
P + + Q +V + G S MAI D+ ++SGF + + K+ SD VS
Sbjct: 1353 PTCEPKAHTSFQISVNVSYTGSRPASHMAIVDVKMVSGFIXLKPTV-KMLERSDN-VSRT 1410
Query: 608 ETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 781
E HVL+Y D V + F Q++ + ++PA +YDYY Y AP
Sbjct: 1411 EVSSNHVLIYLDKVTDQSLSMSFTVTQDIPVRDLKPAIVKVYDYYETAEFAIAEYNAP 1468
>ref|XP_003355629.1| PREDICTED: ovostatin homolog 2-like, partial [Sus scrofa].
Length = 427
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/114 (27%), Positives = 50/114 (43%)
Frame = +2
Query: 449 ESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHV 628
+S T+ + G S M + D+ +LSGF + +E+L S + V E + HV
Sbjct: 313 QSHFDLTITLQYTGIHNNSNMVLVDVKMLSGFTPVMSSIEELES--NGQVMKSEVKNDHV 370
Query: 629 LLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
L + ++V F Q + +QPA ++YDYY + Y S S
Sbjct: 371 LFFLENVWGIANSFSFSVEQSNRVSNIQPAPVMVYDYYEKDEYALASYNINSVS 424
>ref|XP_001927580.2| PREDICTED: CD109 antigen isoform 1 [Sus scrofa].
Length = 1144
Score = 50.1 bits (118), Expect = 3e-06
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Frame = +2
Query: 503 SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 682
SGMA+ ++ LLSGF L +L E + + LY DSV ++ CV A
Sbjct: 1006 SGMALMEVNLLSGFTVPSDSLPLSETLKK-----VEYDVGKLNLYLDSVNETQFCVDIPA 1060
Query: 683 VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVC--QCAEGKCPR 853
V+ + Q AS + DYY P + + Y + +K L S D+C A G C R
Sbjct: 1061 VRNFRVSNTQDASVSIVDYYEPRRRAARSYNSRAK------LSSCDLCGDMNACGGCDR 1113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,612,016
Number of extensions: 1280924
Number of successful extensions: 7249
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6909
Number of HSP's successfully gapped: 9
Length of query: 476
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 373
Effective length of database: 8,779,541
Effective search space: 3274768793
Effective search space used: 3274768793
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003047
(1428 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 511 e-142
>Sscrofa_Chr07
|| Length = 134764511
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 1156 cccccagtacctgctggactcgaactgctggatcgaggagatgccctctgagcgcctgtg 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729329 cccccagtacctgctggactcgaactgctggatcgaggagatgccctctgagcgcctgtg 27729270
Query: 1216 ccggagcacccgccatcgggagccctgtgcccagctcagagacttcatccaggagtacag 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729269 ccggagcacccgccatcgggagccctgtgcccagctcagagacttcatccaggagtacag 27729210
Query: 1276 cacgcagggctgccaggtgtaagggctgctctgctgcctcctccaggaaaagtcacccct 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729209 cacgcagggctgccaggtgtaagggctgctctgctgcctcctccaggaaaagtcacccct 27729150
Query: 1336 ggatccttgcttggcccagtcccctgaacatagccccgggcaggagcaggcacccaataa 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729149 ggatccttgcttggcccagtcccctgaacatagccccgggcaggagcaggcacccaataa 27729090
Query: 1396 aggcttttggcaacagag 1413
||||||||||||||||||
Sbjct: 27729089 aggcttttggcaacagag 27729072
Score = 365 bits (184), Expect = 4e-98
Identities = 187/188 (99%)
Strand = Plus / Minus
Query: 294 tggaggcgaacgaggactacgaggactacgagtacgaggaccttcctgcccaggatgacc 353
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 27733236 tggaggcgaacgaggactacgaggaatacgagtacgaggaccttcctgcccaggatgacc 27733177
Query: 354 ctggggcccactcccagcccgtgacgcccctgcagctgtttgacggccggaggaaccgcc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733176 ctggggcccactcccagcccgtgacgcccctgcagctgtttgacggccggaggaaccgcc 27733117
Query: 414 gcaggagggaggcacccaaggtggccgaagagcaggaatccagggtgcagtacaccgtgt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733116 gcaggagggaggcacccaaggtggccgaagagcaggaatccagggtgcagtacaccgtgt 27733057
Query: 474 gcatctgg 481
||||||||
Sbjct: 27733056 gcatctgg 27733049
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1 tgcgtactggatcttgtcgcacaccaccgaggagaaggagctcaacgtgaccctcagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27735036 tgcgtactggatcttgtcgcacaccaccgaggagaaggagctcaacgtgaccctcagctc 27734977
Query: 61 catgtcccgcggggggttcaagtcccacgtggtgcggctgaccaaccaccaagtgaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27734976 catgtcccgcggggggttcaagtcccacgtggtgcggctgaccaaccaccaagtgaaagg 27734917
Query: 121 cctggaggaggagctgcag 139
|||||||||||||||||||
Sbjct: 27734916 cctggaggaggagctgcag 27734898
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 1023 ctaaggatgtcaaggccgctgctgctcaggcccgaaacttcctggtgcgagcctcttgcc 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729607 ctaaggatgtcaaggccgctgctgctcaggcccgaaacttcctggtgcgagcctcttgcc 27729548
Query: 1083 gccttcacttagaacctgggaaagaatatctgatcatgggcctggacgggaccacccacg 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729547 gccttcacttagaacctgggaaagaatatctgatcatgggcctggacgggaccacccacg 27729488
Query: 1143 acctcaagggaga 1155
|||||||||||||
Sbjct: 27729487 acctcaagggaga 27729475
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 646 ggtccctacctcccgggagtgtgtgggctttggagccgtgcaggaggtggccatcgggct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730645 ggtccctacctcccgggagtgtgtgggctttggagccgtgcaggaggtggccatcgggct 27730586
Query: 706 ggtgcagccggccagcgccgtcctgtacgactactacaaccccg 749
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730585 ggtgcagccggccagcgccgtcctgtacgactactacaaccccg 27730542
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 839 ggcaagtgccctagacagcgccgggccctggagcgggggctgcaggacctggatggttac 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730234 ggcaagtgccctagacagcgccgggccctggagcgggggctgcaggacctggatggttac 27730175
Query: 899 aggatgaagtttgcctgctactcgccccgcgtggattacg 938
||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730174 aggatgaagtttgcctgctactcgccccgcgtggattacg 27730135
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 198 agatcctccgtgcctacaatgtcatagacctgaagaacaccacctgccaggaccttcaga 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733409 agatcctccgtgcctacaatgtcatagacctgaagaacaccacctgccaggaccttcaga 27733350
Query: 258 tcgaagtgacggtcaagggccacgtcgagtacatgt 293
||||||||||||||||||||||||||||||||||||
Sbjct: 27733349 tcgaagtgacggtcaagggccacgtcgagtacatgt 27733314
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 749 gagcacaaatgttctgtgttttacggggcgccaagtaagagcaaattcttgtccacattg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730407 gagcacaaatgttctgtgttttacggggcgccaagtaagagcaaattcttgtccacattg 27730348
Query: 809 tgctcggctgatgtctgccagtgcgccgaggg 840
||||||||||||||||||||||||||||||||
Sbjct: 27730347 tgctcggctgatgtctgccagtgcgccgaggg 27730316
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 480 ggcggaacggccaggtggggctgtcgggcatggccatcgcggacatcaccctcctgagtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27732934 ggcggaacggccaggtggggctgtcgggcatggccatcgcggacatcaccctcctgagtg 27732875
Query: 540 gattctatgccgagcgggctgacctggagaag 571
||||||||||||||||||||||||||||||||
Sbjct: 27732874 gattctatgccgagcgggctgacctggagaag 27732843
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 938 gccttccaggtgaaggttctccgagaagacagcagagctgctttccgcctctttgagacg 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729968 gccttccaggtgaaggttctccgagaagacagcagagctgctttccgcctctttgagacg 27729909
Query: 998 agcatcacccaagtcctacatttcactaag 1027
||||||||||||||||||||||||| ||||
Sbjct: 27729908 agcatcacccaagtcctacatttcagtaag 27729879
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 570 agctgacctccctctctgaccggtacgtcagtcactttgagaccgaggggccccatgtcc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27732695 agctgacctccctctctgaccggtacgtcagtcactttgagaccgaggggccccatgtcc 27732636
Query: 630 tgctgtacttcgactcggt 648
|||||||||||||||||||
Sbjct: 27732635 tgctgtacttcgactcggt 27732617
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 138 agttttccttgggcagcaagattaatgtgaaggtgggaggaaacagcaaaggaaccttga 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27734276 agttttccttgggcagcaagattaatgtgaaggtgggaggaaacagcaaaggaaccttga 27734217
Query: 198 ag 199
||
Sbjct: 27734216 ag 27734215
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,460,360
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 12
Length of query: 1428
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1407
Effective length of database: 2,808,413,156
Effective search space: 3951437310492
Effective search space used: 3951437310492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)