Animal-Genome cDNA 20110601C-003047


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003047
         (1428 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_875097.2| PREDICTED: similar to complement component 4A [...   733   0.0  
Alignment   gi|NP_001159957.1| complement C4 [Bos taurus].                       728   0.0  
Alignment   gi|NP_001035559.2| complement C3 preproprotein [Bos taurus].         124   2e-28
Alignment   gi|NP_001160088.1| complement C5a anaphylatoxin [Bos taurus].        110   2e-24
Alignment   gi|XP_002688886.1| PREDICTED: hemolytic complement-like [Bos ta...    96   8e-20
Alignment   gi|XP_606449.5| PREDICTED: hemolytic complement-like [Bos tauru...    96   8e-20
Alignment   gi|XP_002688595.1| PREDICTED: C3 and PZP-like, alpha-2-macroglo...    77   3e-14
Alignment   gi|XP_609516.3| PREDICTED: C3 and PZP-like, alpha-2-macroglobul...    77   3e-14
Alignment   gi|XP_002687891.1| PREDICTED: pregnancy-zone protein-like [Bos ...    54   3e-07
Alignment   gi|XP_583329.4| PREDICTED: Alpha-2-macroglobulin-like, partial ...    54   3e-07

>ref|XP_875097.2| PREDICTED: similar to complement component 4A [Bos taurus].
          Length = 1742

 Score =  733 bits (1893), Expect = 0.0
 Identities = 359/426 (84%), Positives = 381/426 (89%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEEK LNVTLSS+ R G KSHV++LTNHQV  LEEELQFSLGSKINV+V GN
Sbjct: 1312 AYWIASHTTEEKGLNVTLSSLGRSGLKSHVLQLTNHQVHRLEEELQFSLGSKINVEVRGN 1371

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR+YNV+D+ NTTCQDLQIEVTV GHVEY +EA           L A DDP A
Sbjct: 1372 SKGTLKVLRSYNVMDMTNTTCQDLQIEVTVMGHVEYTMEAEEDYQDYEYEDLLAGDDPEA 1431

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
            HS+PVTPLQLFDGRRNRRRREAPK AEE+ESRVQYTVCIWR G+VGLSGMAIADITLLSG
Sbjct: 1432 HSRPVTPLQLFDGRRNRRRREAPKAAEERESRVQYTVCIWRTGKVGLSGMAIADITLLSG 1491

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFETEGPH+LLYFDSVPTSRECVGFGAVQEV +GLVQPAS
Sbjct: 1492 FHALRADLEKLTSLSDRYVSHFETEGPHILLYFDSVPTSRECVGFGAVQEVPVGLVQPAS 1551

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A+LYDYYNPEHKCSVFYGAP KSK LSTLCSADVCQCAEGKCPRQRRALERG QDL+GYR
Sbjct: 1552 AILYDYYNPEHKCSVFYGAPRKSKLLSTLCSADVCQCAEGKCPRQRRALERGQQDLEGYR 1611

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACYSPRVDY FQVKVLREDSRAAFRLFET ITQVLHFTKD +A A Q RNFLVRASC
Sbjct: 1612 MKFACYSPRVDYGFQVKVLREDSRAAFRLFETRITQVLHFTKDARATADQTRNFLVRASC 1671

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DLKGDPQYLLDSN WIEEMPSER+C+STRHR PCAQL  F
Sbjct: 1672 RLQLEPGKEYLIMGLDGATYDLKGDPQYLLDSNSWIEEMPSERMCQSTRHRTPCAQLNSF 1731

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1732 LQEYGT 1737


>ref|NP_001159957.1| complement C4 [Bos taurus].
          Length = 1741

 Score =  728 bits (1880), Expect = 0.0
 Identities = 357/426 (83%), Positives = 380/426 (89%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI S+T EEK LNVTLSS+ R G KSHV++LTNHQV  LEEELQFSLGSKINV+V GN
Sbjct: 1311 AYWIASYTAEEKGLNVTLSSLGRSGLKSHVLQLTNHQVHRLEEELQFSLGSKINVEVRGN 1370

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR+YNV+D+ NTTCQDLQIEVTV GHVEY +EA           L A DDP A
Sbjct: 1371 SKGTLKVLRSYNVMDMTNTTCQDLQIEVTVMGHVEYTMEAEEDYEDYEYEDLLAGDDPEA 1430

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
            HS+PVTPLQLFDGRRNRRRREAPK AEE+ESRVQYTVCIWR G+VGLSGMAIADITLLSG
Sbjct: 1431 HSRPVTPLQLFDGRRNRRRREAPKAAEERESRVQYTVCIWRTGKVGLSGMAIADITLLSG 1490

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRY+SHFETEGPHVLLYFDSVPTSRECVGFGAVQEV +GLVQPAS
Sbjct: 1491 FHALRADLEKLTSLSDRYMSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVPVGLVQPAS 1550

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A+LYDYYNPEHKCSVFYGAP KSK LSTLCSADVCQCAEGKCPRQRRALERG QDL+GYR
Sbjct: 1551 AILYDYYNPEHKCSVFYGAPRKSKLLSTLCSADVCQCAEGKCPRQRRALERGQQDLEGYR 1610

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACYSPRVDY FQVKVLREDSRAAFRLFET ITQVLHFTKD +A A Q RNFLVRASC
Sbjct: 1611 MKFACYSPRVDYGFQVKVLREDSRAAFRLFETRITQVLHFTKDARATADQTRNFLVRASC 1670

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DLKGDPQYLLDSN WIEEMPSER+C+STRHR PCAQL  F
Sbjct: 1671 RLQLEPGKEYLIMGLDGATYDLKGDPQYLLDSNSWIEEMPSERMCQSTRHRTPCAQLNSF 1730

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1731 LQEYGT 1736


>ref|NP_001035559.2| complement C3 preproprotein [Bos taurus].
          Length = 1661

 Score =  124 bits (312), Expect = 2e-28
 Identities = 98/420 (23%), Positives = 173/420 (41%), Gaps = 7/420 (1%)
 Frame = +2

Query: 29   EEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGNSKGTLKILR 208
            +E  L+V++   SR     H +   +  +   EE  +     +  VK  G  +GTL ++ 
Sbjct: 1289 KELNLDVSIQLPSRNSAVRHRILWESASLLRSEETKE---NERFTVKAEGKGQGTLSVVT 1345

Query: 209  AYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHSQPVTPLQ 388
             Y+       +C+   + V+++                     PA               
Sbjct: 1346 VYHAKLKGKVSCKKFDLRVSIR---------------------PAP-------------- 1370

Query: 389  LFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLE 568
                       E  K  ++ +  +   +C    G    + M+I DI++++GF  +  DL+
Sbjct: 1371 -----------ETVKKPQDAKGSMILDICTKYLGDQDAT-MSILDISMMTGFSPDVEDLK 1418

Query: 569  KLTSLSDRYVSHFETEGPH----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLY 733
             L++  DRY+S +E         +++Y D V  T  +C+ F   Q   +GL+QP +  +Y
Sbjct: 1419 TLSTGVDRYISKYEMNRDSNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVGLIQPGAVKVY 1478

Query: 734  DYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFA 913
             YYN +  C  FY    +   LS LC  D C+CAE  C       E  L+D    R+  A
Sbjct: 1479 SYYNLDETCIRFYHPDKEDGMLSKLCHKDTCRCAEENCFMHHTEKEVTLED----RLDKA 1534

Query: 914  CYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--L 1087
            C  P VDY ++ +++++     F  +   I  ++    D +    Q R F+    CR  L
Sbjct: 1535 C-EPGVDYVYKTRLIQKKLEDDFDEYIMVIENIIKSGSD-EVQVKQERKFISHIKCREAL 1592

Query: 1088 HLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1267
             L+ G  YL+ G+       K    Y++  + W+E  P    C+   +++ C  L +F +
Sbjct: 1593 KLKEGAHYLVWGVSSDLWGEKPKISYIIGKDTWVELWPEAEECQDEENQKQCEDLANFTE 1652


>ref|NP_001160088.1| complement C5a anaphylatoxin [Bos taurus].
          Length = 1677

 Score =  110 bits (276), Expect = 2e-24
 Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
            S  A+ DI+L +G  A   DL+ L    D+ ++ +E +  HV+L  +S+P++   CV F 
Sbjct: 1417 SSHAVMDISLPTGVNANPEDLKALVEQVDQLLTDYEIKDGHVILQLNSIPSNEFLCVRFR 1476

Query: 680  AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
             ++   +G + PA+  +Y+Y+ P+ +C++FY   +    L  +C    C+C E  C + +
Sbjct: 1477 IIELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNTK--LQKVCEGVTCKCIEADCGQMQ 1534

Query: 860  RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
              L+  L      R + AC  P + YA++V+++      AF  +  ++   L   K  +A
Sbjct: 1535 AELD--LTISAATRKETAC-KPEIAYAYKVEIVAVTEENAFVKYTATL---LDIYKAGEA 1588

Query: 1040 AAAQAR--NFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPS 1204
            AA +     F+ + SC   +LE  K+YLIMG +     H+ +    Y LDS+ WIE  P+
Sbjct: 1589 AAERDAEITFIKKTSCSNANLEKRKQYLIMGKEALQIKHNFRFKYVYPLDSSTWIEYWPT 1648

Query: 1205 ERLCRS 1222
            +  C S
Sbjct: 1649 DSRCPS 1654


>ref|XP_002688886.1| PREDICTED: hemolytic complement-like [Bos taurus].
          Length = 1618

 Score = 95.9 bits (237), Expect = 8e-20
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
 Frame = +2

Query: 509  MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
            M I +I+LL+GFY  + DL++LTS  +RY   +ET+       V+LY + +    + V G
Sbjct: 1356 MTIMEISLLTGFYPNQDDLKQLTSEVERYAFQYETKMNSSDSTVVLYLEKLSHKEDTVLG 1415

Query: 674  FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 853
            F   + +    +Q A   +YDYY P  +C+ FY  P++   L  +C  DVC+CAE +CP 
Sbjct: 1416 FRVHRMLKAEFLQAAQVTVYDYYEPSRRCTSFYNLPTEHASLRKICDKDVCRCAEEQCPS 1475

Query: 854  QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLR-EDSRAAFRLFETSITQVLHFTKD 1030
             ++      Q+     ++ A     VD+ ++  +   E S +   ++     Q +  +  
Sbjct: 1476 PKKDSNHLSQE----ELQTAACEAGVDFVYKASLESVETSDSNPYIYYNMKLQAIIKSGT 1531

Query: 1031 VKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPS 1204
              A     + F+   +C+  L L+  + YLIMG       +K +  ++L    ++   P+
Sbjct: 1532 DSAKPLAVKKFVTHTTCQDSLGLQEHETYLIMGQISDLWRVKSEYIHVLGKETFLMHWPA 1591


>ref|XP_606449.5| PREDICTED: hemolytic complement-like [Bos taurus].
          Length = 1618

 Score = 95.9 bits (237), Expect = 8e-20
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
 Frame = +2

Query: 509  MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
            M I +I+LL+GFY  + DL++LTS  +RY   +ET+       V+LY + +    + V G
Sbjct: 1356 MTIMEISLLTGFYPNQDDLKQLTSEVERYAFQYETKMNSSDSTVVLYLEKLSHKEDTVLG 1415

Query: 674  FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 853
            F   + +    +Q A   +YDYY P  +C+ FY  P++   L  +C  DVC+CAE +CP 
Sbjct: 1416 FRVHRMLKAEFLQAAQVTVYDYYEPSRRCTSFYNLPTEHASLRKICDKDVCRCAEEQCPS 1475

Query: 854  QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLR-EDSRAAFRLFETSITQVLHFTKD 1030
             ++      Q+     ++ A     VD+ ++  +   E S +   ++     Q +  +  
Sbjct: 1476 PKKDSNHLSQE----ELQTAACEAGVDFVYKASLESVETSDSNPYIYYNMKLQAIIKSGT 1531

Query: 1031 VKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPS 1204
              A     + F+   +C+  L L+  + YLIMG       +K +  ++L    ++   P+
Sbjct: 1532 DSAKPLAVKKFVTHTTCQDSLGLQEHETYLIMGQISDLWRVKSEYIHVLGKETFLMHWPA 1591


>ref|XP_002688595.1| PREDICTED: C3 and PZP-like, alpha-2-macroglobulin domain containing 8
            [Bos taurus].
          Length = 1839

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
 Frame = +2

Query: 446  QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 619
            QE +V   VC  R    G S MA+ ++ LLSGF A+   LE+L  L D++V+   +E  G
Sbjct: 1586 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRADVESLEQL--LLDKHVALKRYELAG 1642

Query: 620  PHVLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 796
              VL YFD +P+    CV F A++E  +G       ++YDYY P  + + FY   ++S  
Sbjct: 1643 RRVLFYFDEIPSRCLTCVQFRALREHVVGRTSALPILVYDYYEPAFEATRFYNVSARSPL 1702

Query: 797  LSTLCSADVCQCAEGKCPRQRRALERG 877
               LC+   C   E       RAL +G
Sbjct: 1703 ARELCAGPACNEVE-------RALAQG 1722


>ref|XP_609516.3| PREDICTED: C3 and PZP-like, alpha-2-macroglobulin domain containing
            8, partial [Bos taurus].
          Length = 1863

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
 Frame = +2

Query: 446  QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 619
            QE +V   VC  R    G S MA+ ++ LLSGF A+   LE+L  L D++V+   +E  G
Sbjct: 1610 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRADVESLEQL--LLDKHVALKRYELAG 1666

Query: 620  PHVLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 796
              VL YFD +P+    CV F A++E  +G       ++YDYY P  + + FY   ++S  
Sbjct: 1667 RRVLFYFDEIPSRCLTCVQFRALREHVVGRTSALPILVYDYYEPAFEATRFYNVSARSPL 1726

Query: 797  LSTLCSADVCQCAEGKCPRQRRALERG 877
               LC+   C   E       RAL +G
Sbjct: 1727 ARELCAGPACNEVE-------RALAQG 1746


>ref|XP_002687891.1| PREDICTED: pregnancy-zone protein-like [Bos taurus].
          Length = 1424

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 32/113 (28%), Positives = 54/113 (47%)
 Frame = +2

Query: 455  RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 634
            +VQ  V I   G+   S M I D+ ++SGF   ++ + KL  ++   +   E    HVL+
Sbjct: 1308 KVQIHVNISYTGERPSSNMVIVDVKMVSGFIPVKSSVRKLQEMAQ--IQRTEVSTNHVLI 1365

Query: 635  YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 793
            YF+ +        F   Q++A+  ++PA+   YDYY  E      Y  P  ++
Sbjct: 1366 YFEELTHHILSFFFSVEQDIAVKNLKPATIKAYDYYETEEFTIEEYSVPCSAE 1418


>ref|XP_583329.4| PREDICTED: Alpha-2-macroglobulin-like, partial [Bos taurus].
          Length = 999

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 32/113 (28%), Positives = 54/113 (47%)
 Frame = +2

Query: 455  RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 634
            +VQ  V I   G+   S M I D+ ++SGF   ++ + KL  ++   +   E    HVL+
Sbjct: 883  KVQIHVNISYTGERPSSNMVIVDVKMVSGFIPVKSSVRKLQEMAQ--IQRTEVSTNHVLI 940

Query: 635  YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 793
            YF+ +        F   Q++A+  ++PA+   YDYY  E      Y  P  ++
Sbjct: 941  YFEELTHHILSFFFSVEQDIAVKNLKPATIKAYDYYETEEFTIEEYSVPCSAE 993


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,674,510
Number of extensions: 1969458
Number of successful extensions: 10890
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 10697
Number of HSP's successfully gapped: 12
Length of query: 476
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,174,046
Effective search space: 5244397020
Effective search space used: 5244397020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003047
         (1428 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538843.2| PREDICTED: similar to Complement C4 precursor [...   712   0.0  
Alignment   gi|XP_855532.1| PREDICTED: similar to Complement C5 precursor [...   103   3e-22
Alignment   gi|XP_533932.2| PREDICTED: similar to Complement C3 precursor [...    91   3e-18
Alignment   gi|XP_852711.1| PREDICTED: similar to C3 and PZP-like, alpha-2-...    76   7e-14
Alignment   gi|XP_534893.2| PREDICTED: similar to Alpha-2-macroglobulin pre...    54   5e-07
Alignment   gi|XP_854216.1| PREDICTED: similar to Alpha-2-macroglobulin pre...    52   1e-06
Alignment   gi|XP_542077.2| PREDICTED: similar to Complement C3 precursor [...    50   5e-06
Alignment   gi|XP_854220.1| PREDICTED: similar to pregnancy-zone protein [C...    49   9e-06

>ref|XP_538843.2| PREDICTED: similar to Complement C4 precursor [Canis familiaris].
          Length = 1587

 Score =  712 bits (1838), Expect = 0.0
 Identities = 352/428 (82%), Positives = 376/428 (87%), Gaps = 2/428 (0%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI+SHTT+E+ELNVTLSS+ R GFKSH ++L NHQV+GLEEELQFSLGSKINVKVGGN
Sbjct: 1155 AYWIVSHTTKERELNVTLSSIGRSGFKSHELQLNNHQVQGLEEELQFSLGSKINVKVGGN 1214

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLE--ANXXXXXXXXXXLPAQDDP 355
            SKG LKILR YNV+DLKNTTC+DLQIEV+V GHVEY  E  AN          +PA+DDP
Sbjct: 1215 SKGILKILRTYNVLDLKNTTCEDLQIEVSVVGHVEYTSEWEANEDYEDYVYEEVPAKDDP 1274

Query: 356  GAHSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLL 535
             A SQ VTPL+LF+ RRNRRRREAPK  EE+ESRVQYTVCIWRNG+VGLSGMAIADITLL
Sbjct: 1275 DASSQTVTPLELFERRRNRRRREAPKAPEEEESRVQYTVCIWRNGKVGLSGMAIADITLL 1334

Query: 536  SGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQP 715
            SGF A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEV +GLVQP
Sbjct: 1335 SGFSALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVPVGLVQP 1394

Query: 716  ASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDG 895
            ASA LYDYYNPEHKCSVFYGAP++SK LSTLCSADVCQCAEGKCPRQRRALERGLQD  G
Sbjct: 1395 ASAALYDYYNPEHKCSVFYGAPTRSKLLSTLCSADVCQCAEGKCPRQRRALERGLQDEAG 1454

Query: 896  YRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRA 1075
            YRM+FACY PRV Y FQVKVLRED RAAFRLFETSITQV+HFTKD KA   Q RNFLVR 
Sbjct: 1455 YRMRFACYYPRVQYGFQVKVLREDGRAAFRLFETSITQVIHFTKDTKAKVGQTRNFLVRD 1514

Query: 1076 SCRLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLR 1255
            SCRL LEPGKEYLIMGLDG T DLKGDPQYLLDSN WIEEMPS+RLC+STRHR  CAQL 
Sbjct: 1515 SCRLRLEPGKEYLIMGLDGATSDLKGDPQYLLDSNSWIEEMPSKRLCQSTRHRAACAQLS 1574

Query: 1256 DFIQEYST 1279
            DF+QEY T
Sbjct: 1575 DFLQEYGT 1582


>ref|XP_855532.1| PREDICTED: similar to Complement C5 precursor [Canis familiaris].
          Length = 473

 Score =  103 bits (258), Expect = 3e-22
 Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 4/238 (1%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
            S  A+ DI+L +G  A   DL  L    D+ ++ ++ +  HV+L  DS+P+    CV F 
Sbjct: 212  SSHAVMDISLPTGVSANIEDLRALVEGVDQLLTDYQIKDGHVILQLDSIPSDEFLCVRFR 271

Query: 680  AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
              +   +G + PA+  +Y+Y+ P+ +C++FY +PS SK L  +C    C+C E  C + +
Sbjct: 272  IFELFQVGFLSPATFTVYEYHRPDKQCTMFY-SPSGSK-LQKVCEGVTCKCVEADCGQMQ 329

Query: 860  RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
              L+  L      R + AC  P + YA++V +        F  +  ++  V +   +  A
Sbjct: 330  AELD--LTISADARKETAC-KPDIAYAYKVHITSITKENVFIKYTATLLDV-YKAGEAAA 385

Query: 1040 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPS 1204
                   F+ +A+C    LE G+ YLIMG +     H+      Y LDS+ WIE  P+
Sbjct: 386  QKDSEITFIKKATCANAELEKGRHYLIMGKEALQIKHNFSFKYIYPLDSSTWIEYWPT 443


>ref|XP_533932.2| PREDICTED: similar to Complement C3 precursor [Canis familiaris].
          Length = 1549

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
 Frame = +2

Query: 509  MAIADITLLSGFYAERADLEKLTSLSDRYVSHFE-----TEGPHVLLYFDSVPTSRE-CV 670
            M+I DI++++GF  +  DL +L+S  +RY+S +E     +   +V+LY + +  ++E C+
Sbjct: 1401 MSILDISMMTGFSPDTCDLNQLSSGIERYISKYELNKAFSNKNNVILYLEKISHNQEDCI 1460

Query: 671  GFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCP 850
             F   Q   +GL+QP S  +Y YYN +  C+ FY    +   LS LC  D+C+CAE  C 
Sbjct: 1461 SFRVHQYFKVGLIQPGSVKVYSYYNLDESCTRFYHPEKEDGQLSKLCHKDMCRCAEENCF 1520

Query: 851  RQRRALERGLQDLDGYRMKFACYSPRVDYAFQ 946
             Q +  ++  +D    R+  AC  P VDY  Q
Sbjct: 1521 MQ-QVYDKVTKD---ERLDKAC-EPGVDYGTQ 1547


>ref|XP_852711.1| PREDICTED: similar to C3 and PZP-like, alpha-2-macroglobulin domain
            containing 8 [Canis familiaris].
          Length = 1746

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
 Frame = +2

Query: 443  EQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGP 622
            +QE +V   VC  R    G S MA+ ++ LLSGF  +   LE+L       +  +E  G 
Sbjct: 1537 QQEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRVDIESLEQLLFDKHFTLKRYEVAGR 1595

Query: 623  HVLLYFDSVPTS-RECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFL 799
             VL YFD +P+    CV F A++E  +G        +YDYY P  + + FY   S+S   
Sbjct: 1596 RVLFYFDEIPSRCLTCVRFRALREHVVGRTSALPVSVYDYYEPAFEATRFYNVSSRSPLA 1655

Query: 800  STLCSADVCQCAEGKCPRQ 856
              LC+   C   E + P Q
Sbjct: 1656 RELCAGPACNEVE-RAPAQ 1673


>ref|XP_534893.2| PREDICTED: similar to Alpha-2-macroglobulin precursor (Alpha-2-M)
            [Canis familiaris].
          Length = 2036

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 30/93 (32%), Positives = 46/93 (49%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 682
            S M I D+ ++SGF   +  ++ L   S  +VS  E    HVL+Y D V      + F  
Sbjct: 1938 SNMVITDVKMVSGFIPLKPTVKMLERSS--HVSRTEVSNNHVLIYLDKVTNQTLSLSFMV 1995

Query: 683  VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 781
            +Q+V +  ++PA   +YDYY  +      Y AP
Sbjct: 1996 LQDVPVRDLKPAIVKVYDYYETDEFAIAEYNAP 2028


>ref|XP_854216.1| PREDICTED: similar to Alpha-2-macroglobulin precursor (Alpha-2-M)
            [Canis familiaris].
          Length = 1699

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 31/96 (32%), Positives = 46/96 (47%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 682
            S M + D+ +LSGF    A +EKL +  +  V   E +  HVL Y ++V  +     F  
Sbjct: 1603 SNMVLVDVKMLSGFTPVMASIEKLEN--NGQVMKTEVKNDHVLFYLETVFGTANHFTFSV 1660

Query: 683  VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
             Q   +  +QPA  ++YDYY  +    V Y   S S
Sbjct: 1661 EQTNLVSNIQPAPVMVYDYYEKDEYALVSYNINSVS 1696


>ref|XP_542077.2| PREDICTED: similar to Complement C3 precursor [Canis familiaris].
          Length = 1877

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
 Frame = +2

Query: 509  MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
            M+I +++LL+GFY  + DL++LTS  + Y   +ET+       V+LY + +    + V G
Sbjct: 1305 MSIIEVSLLTGFYPNQNDLKQLTSDVEMYAFQYETKTSSSDSTVVLYLEKLSHKEDTVLG 1364

Query: 674  FGAVQEVAIGLVQPASAVLYDYYNP 748
            F   + +    +Q A   +YDYY P
Sbjct: 1365 FRVHRMLQAEFLQAAQVTIYDYYEP 1389


>ref|XP_854220.1| PREDICTED: similar to pregnancy-zone protein [Canis familiaris].
          Length = 1506

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +2

Query: 455  RVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLL 634
            + Q  + I   G+   S M I D+ ++SGF   ++ + KL       +   E    HVL+
Sbjct: 1381 KFQIHINISYTGERSSSNMVIVDVKMVSGFIPVKSSVRKLQEKPQ--IQRTEVSTNHVLI 1438

Query: 635  YFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYY 742
            YF+ +        F   Q++ +  ++PA+   YDYY
Sbjct: 1439 YFEELTNQTLSFSFSVEQDIQVDNLKPATVKAYDYY 1474


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,164,223
Number of extensions: 2027779
Number of successful extensions: 10937
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10692
Number of HSP's successfully gapped: 8
Length of query: 476
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 369
Effective length of database: 15,307,552
Effective search space: 5648486688
Effective search space used: 5648486688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003047
         (1428 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003403643.1| PREDICTED: complement C4-A isoform 1 [Homo s...   729   0.0  
Alignment   gi|NP_001002029.3| complement C4-B preproprotein [Homo sapiens].     729   0.0  
Alignment   gi|NP_001229752.1| complement C4-B-like preproprotein [Homo sap...   729   0.0  
Alignment   gi|NP_009224.2| complement C4-A preproprotein [Homo sapiens].        729   0.0  
Alignment   gi|XP_003403644.1| PREDICTED: complement C4-A isoform 2 [Homo s...   627   e-180
Alignment   gi|NP_000055.2| complement C3 precursor [Homo sapiens].              125   1e-28
Alignment   gi|NP_001726.2| complement C5 preproprotein [Homo sapiens].           99   1e-20
Alignment   gi|NP_056507.2| C3 and PZP-like alpha-2-macroglobulin domain-co...    76   7e-14
Alignment   gi|NP_001153060.1| CD109 antigen isoform 3 precursor [Homo sapi...    57   4e-08
Alignment   gi|NP_001153059.1| CD109 antigen isoform 2 precursor [Homo sapi...    57   4e-08

>ref|XP_003403643.1| PREDICTED: complement C4-A isoform 1 [Homo sapiens].
          Length = 1744

 Score =  729 bits (1881), Expect = 0.0
 Identities = 357/426 (83%), Positives = 380/426 (89%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEE+ LNVTLSS  R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN          LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R  CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1734 LQEYGT 1739


>ref|NP_001002029.3| complement C4-B preproprotein [Homo sapiens].
          Length = 1744

 Score =  729 bits (1881), Expect = 0.0
 Identities = 357/426 (83%), Positives = 380/426 (89%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEE+ LNVTLSS  R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN          LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R  CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1734 LQEYGT 1739


>ref|NP_001229752.1| complement C4-B-like preproprotein [Homo sapiens].
          Length = 1744

 Score =  729 bits (1881), Expect = 0.0
 Identities = 357/426 (83%), Positives = 380/426 (89%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEE+ LNVTLSS  R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN          LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R  CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1734 LQEYGT 1739


>ref|NP_009224.2| complement C4-A preproprotein [Homo sapiens].
          Length = 1744

 Score =  729 bits (1881), Expect = 0.0
 Identities = 357/426 (83%), Positives = 380/426 (89%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEE+ LNVTLSS  R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN          LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRRNRRRREAPKV EEQESRV YTVCIWRNG+VGLSGMAIAD+TLLSG
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSG 1493

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1494 FHALRADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1553

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1554 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1613

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1614 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1673

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R  CAQL DF
Sbjct: 1674 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1733

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1734 LQEYGT 1739


>ref|XP_003403644.1| PREDICTED: complement C4-A isoform 2 [Homo sapiens].
          Length = 1698

 Score =  627 bits (1618), Expect = e-180
 Identities = 317/426 (74%), Positives = 337/426 (79%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEE+ LNVTLSS  R GFKSH ++L N Q++GLEEELQFSLGSKINVKVGGN
Sbjct: 1314 AYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGN 1373

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLK+LR YNV+D+KNTTCQDLQIEVTVKGHVEY +EAN          LPA+DDP A
Sbjct: 1374 SKGTLKVLRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDA 1433

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRRNRRRREAP                                     
Sbjct: 1434 PLQPVTPLQLFEGRRNRRRREAP------------------------------------- 1456

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
                     KLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGF AVQEV +GLVQPAS
Sbjct: 1457 ---------KLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPAS 1507

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            A LYDYYNPE +CSVFYGAPSKS+ L+TLCSA+VCQCAEGKCPRQRRALERGLQD DGYR
Sbjct: 1508 ATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYR 1567

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACY PRV+Y FQVKVLREDSRAAFRLFET ITQVLHFTKDVKAAA Q RNFLVRASC
Sbjct: 1568 MKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASC 1627

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEPGKEYLIMGLDG T+DL+G PQYLLDSN WIEEMPSERLCRSTR R  CAQL DF
Sbjct: 1628 RLRLEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDF 1687

Query: 1262 IQEYST 1279
            +QEY T
Sbjct: 1688 LQEYGT 1693


>ref|NP_000055.2| complement C3 precursor [Homo sapiens].
          Length = 1663

 Score =  125 bits (314), Expect = 1e-28
 Identities = 102/421 (24%), Positives = 178/421 (42%), Gaps = 8/421 (1%)
 Frame = +2

Query: 29   EEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGNSKGTLKILR 208
            +E  L+V+L   SR    +H +   +  +   EE  +        V   G  +GTL ++ 
Sbjct: 1290 QELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKE---NEGFTVTAEGKGQGTLSVVT 1346

Query: 209  AYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGAHSQPVTPLQ 388
             Y+       TC    ++VT+K                     PA               
Sbjct: 1347 MYHAKAKDQLTCNKFDLKVTIK---------------------PAP-------------- 1371

Query: 389  LFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLE 568
                       E  K  ++ ++ +   +C    G    + M+I DI++++GF  +  DL+
Sbjct: 1372 -----------ETEKRPQDAKNTMILEICTRYRGDQDAT-MSILDISMMTGFAPDTDDLK 1419

Query: 569  KLTSLSDRYVSHFETEGPH-----VLLYFDSVPTSRE-CVGFGAVQEVAIGLVQPASAVL 730
            +L +  DRY+S +E +        +++Y D V  S + C+ F   Q   + L+QP +  +
Sbjct: 1420 QLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKV 1479

Query: 731  YDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKF 910
            Y YYN E  C+ FY    +   L+ LC  ++C+CAE  C  Q+   +  L++    R+  
Sbjct: 1480 YAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEE----RLDK 1535

Query: 911  ACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR-- 1084
            AC  P VDY ++ ++++      F  +  +I Q +    D +    Q R F+    CR  
Sbjct: 1536 AC-EPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSD-EVQVGQQRTFISPIKCREA 1593

Query: 1085 LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFI 1264
            L LE  K YL+ GL       K +  Y++  + W+E  P E  C+   +++ C  L  F 
Sbjct: 1594 LKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFT 1653

Query: 1265 Q 1267
            +
Sbjct: 1654 E 1654


>ref|NP_001726.2| complement C5 preproprotein [Homo sapiens].
          Length = 1676

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
            S  A+ DI+L +G  A   DL+ L    D+  + ++ +  HV+L  +S+P+S   CV F 
Sbjct: 1419 SSHAVMDISLPTGISANEEDLKALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFR 1478

Query: 680  AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
              +   +G + PA+  +Y+Y+ P+ +C++FY   +    +  +C    C+C E  C + +
Sbjct: 1479 IFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIK--IQKVCEGAACKCVEADCGQMQ 1536

Query: 860  RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
              L+  L      R + AC  P + YA++V +        F  ++ ++  + + T +  A
Sbjct: 1537 EELD--LTISAETRKQTAC-KPEIAYAYKVSITSITVENVFVKYKATLLDI-YKTGEAVA 1592

Query: 1040 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDGTTHDLKGDPQYL--LDSNCWIEEMPSER 1210
                   F+ + +C    L  G++YLIMG +          +Y+  LDS  WIE  P + 
Sbjct: 1593 EKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDT 1652

Query: 1211 LCRS 1222
             C S
Sbjct: 1653 TCSS 1656


>ref|NP_056507.2| C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8
            [Homo sapiens].
          Length = 1932

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
 Frame = +2

Query: 446  QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPH 625
            QE +V   VC  R    G S MA+ ++ LLSGF A+   LE+L       +  +E  G  
Sbjct: 1598 QEYKVMLEVCT-RWLHAGSSNMAVLEVPLLSGFRADIESLEQLLLDKHMGMKRYEVAGRR 1656

Query: 626  VLLYFDSVPT-SRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLS 802
            VL YFD +P+    CV F A++E  +G        +YDYY P  + + FY   + S    
Sbjct: 1657 VLFYFDEIPSRCLTCVRFRALRECVVGRTSALPVSVYDYYEPAFEATRFYNVSTHSPLAR 1716

Query: 803  TLCSADVCQCAE 838
             LC+   C   E
Sbjct: 1717 ELCAGPACNEVE 1728


>ref|NP_001153060.1| CD109 antigen isoform 3 precursor [Homo sapiens].
          Length = 1368

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 45/142 (31%), Positives = 65/142 (45%)
 Frame = +2

Query: 425  APKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSH 604
            A K  ++  + V   VC   +G  G SGMA+ ++ LLSGF        +  SLS+  V  
Sbjct: 1209 AVKENKDDLNHVDLNVCTSFSGP-GRSGMALMEVNLLSGFMVP----SEAISLSET-VKK 1262

Query: 605  FETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPS 784
             E +   + LY DSV  ++ CV   AV+   +   Q AS  + DYY P  +    Y +  
Sbjct: 1263 VEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEV 1322

Query: 785  KSKFLSTLCSADVCQCAEGKCP 850
            K      L S D+C   +G  P
Sbjct: 1323 K------LSSCDLCSDVQGCRP 1338


>ref|NP_001153059.1| CD109 antigen isoform 2 precursor [Homo sapiens].
          Length = 1428

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 45/142 (31%), Positives = 65/142 (45%)
 Frame = +2

Query: 425  APKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSH 604
            A K  ++  + V   VC   +G  G SGMA+ ++ LLSGF        +  SLS+  V  
Sbjct: 1269 AVKENKDDLNHVDLNVCTSFSGP-GRSGMALMEVNLLSGFMVP----SEAISLSET-VKK 1322

Query: 605  FETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPS 784
             E +   + LY DSV  ++ CV   AV+   +   Q AS  + DYY P  +    Y +  
Sbjct: 1323 VEYDHGKLNLYLDSVNETQFCVNIPAVRNFKVSNTQDASVSIVDYYEPRRQAVRSYNSEV 1382

Query: 785  KSKFLSTLCSADVCQCAEGKCP 850
            K      L S D+C   +G  P
Sbjct: 1383 K------LSSCDLCSDVQGCRP 1398


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,672,154
Number of extensions: 1955686
Number of successful extensions: 10418
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 10230
Number of HSP's successfully gapped: 16
Length of query: 476
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,802,980
Effective search space: 5477102600
Effective search space used: 5477102600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003047
         (1428 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033910.2| complement C4-B precursor [Mus musculus].            664   0.0  
Alignment   gi|XP_978162.1| PREDICTED: complement C4-B-like isoform 5 [Mus ...   663   0.0  
Alignment   gi|NP_035543.2| sex-limited protein [Mus musculus].                  650   0.0  
Alignment   gi|NP_033908.2| complement C3 [Mus musculus].                        139   5e-33
Alignment   gi|XP_003086840.1| PREDICTED: complement C3-like, partial [Mus ...   116   4e-26
Alignment   gi|NP_034536.1| complement C5 preproprotein [Mus musculus].           97   4e-20
Alignment   gi|NP_032672.2| murinoglobulin-2 precursor [Mus musculus].            58   2e-08
Alignment   gi|NP_032671.2| murinoglobulin-1 precursor [Mus musculus].            56   8e-08
Alignment   gi|XP_001480324.2| PREDICTED: murinoglobulin-1-like [Mus muscul...    54   4e-07
Alignment   gi|XP_922625.4| PREDICTED: murinoglobulin-1-like [Mus musculus].      54   4e-07

>ref|NP_033910.2| complement C4-B precursor [Mus musculus].
          Length = 1738

 Score =  664 bits (1714), Expect = 0.0
 Identities = 325/426 (76%), Positives = 362/426 (84%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEEK LNVTLSSM R G K+H + L NHQVKGLEEEL+FSLGS I+VKV GN
Sbjct: 1310 AYWIASHTTEEKALNVTLSSMGRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGN 1369

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLKILR YNV+D+KNTTCQDLQIEV V G VEY  +AN          +PA DDP  
Sbjct: 1370 SKGTLKILRTYNVLDMKNTTCQDLQIEVKVTGAVEYAWDANEDYEDYYD--MPAADDPSV 1427

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRR+RRRREAPKV EEQESRVQYTVCIWRNG++GLSGMAIADITLLSG
Sbjct: 1428 PLQPVTPLQLFEGRRSRRRREAPKVVEEQESRVQYTVCIWRNGKLGLSGMAIADITLLSG 1487

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQP+S
Sbjct: 1488 FHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPSS 1547

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            AVLYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR  R+LER ++D DGYR
Sbjct: 1548 AVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYR 1607

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            M+FACY PRV+Y F VKVLRED RAAFRLFE+ ITQVLHF KD  A+  Q RNFL RASC
Sbjct: 1608 MRFACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASC 1667

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR  C QL+DF
Sbjct: 1668 RLRLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDF 1727

Query: 1262 IQEYST 1279
            + E+S+
Sbjct: 1728 LMEFSS 1733


>ref|XP_978162.1| PREDICTED: complement C4-B-like isoform 5 [Mus musculus].
          Length = 1738

 Score =  663 bits (1711), Expect = 0.0
 Identities = 324/426 (76%), Positives = 362/426 (84%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEEK LNVTLSSM R G K+H + L NHQVKGLEEEL+FSLGS I+VKV GN
Sbjct: 1310 AYWIASHTTEEKALNVTLSSMGRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGN 1369

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLKILR YNV+D+KNTTCQDLQIEV V G VEY  +AN          +PA DDP  
Sbjct: 1370 SKGTLKILRTYNVLDMKNTTCQDLQIEVKVTGAVEYAWDANEDYEDYYD--MPAADDPSV 1427

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GR++RRRREAPKV EEQESRVQYTVCIWRNG++GLSGMAIADITLLSG
Sbjct: 1428 PLQPVTPLQLFEGRKSRRRREAPKVVEEQESRVQYTVCIWRNGKLGLSGMAIADITLLSG 1487

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQP+S
Sbjct: 1488 FHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPSS 1547

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            AVLYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR  R+LER ++D DGYR
Sbjct: 1548 AVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYR 1607

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            M+FACY PRV+Y F VKVLRED RAAFRLFE+ ITQVLHF KD  A+  Q RNFL RASC
Sbjct: 1608 MRFACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASC 1667

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR  C QL+DF
Sbjct: 1668 RLRLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDF 1727

Query: 1262 IQEYST 1279
            + E+S+
Sbjct: 1728 LMEFSS 1733


>ref|NP_035543.2| sex-limited protein [Mus musculus].
          Length = 1735

 Score =  650 bits (1677), Expect = 0.0
 Identities = 320/426 (75%), Positives = 357/426 (83%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWI SHTTEEK LNVTLSSM R G K+H + L NHQVKGLEEEL+FSLGS I+VKV GN
Sbjct: 1307 AYWIASHTTEEKALNVTLSSMGRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGN 1366

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLKILR YNV+D+KNTTCQDLQIEV V   VEY   A           +PA DDP  
Sbjct: 1367 SKGTLKILRTYNVLDMKNTTCQDLQIEVKVTDAVEYAWSA--YEDYEDDYNMPATDDPSV 1424

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
              QPVTPLQLF+GRR+RRRREAPKVAEE+ESRV YTVCIWRNG++GLSGMAIADITLLSG
Sbjct: 1425 PLQPVTPLQLFEGRRSRRRREAPKVAEERESRVHYTVCIWRNGKLGLSGMAIADITLLSG 1484

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            F+A RADLEKLTSLSDRYVSHFET+GPHVLLYFDSVPT+RECVGFGA QEV +GLVQPAS
Sbjct: 1485 FHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVVGLVQPAS 1544

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            AVLYDYY+P+HKCSVFY AP+KS+ L+TLCS DVCQCAEGKCPR  R+LER ++D DGYR
Sbjct: 1545 AVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYR 1604

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            M+FACY  +V+Y F VKVLRED RAAFRLFE+ ITQVLHF  D  A+  Q RNFL RASC
Sbjct: 1605 MRFACYYHQVEYGFTVKVLREDGRAAFRLFESKITQVLHFRTDTMASIGQTRNFLSRASC 1664

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RL LEP KEYLIMG+DG T D KGDPQYLLDSN WIEEMPSE++C+STRHR  C QL+DF
Sbjct: 1665 RLRLEPNKEYLIMGMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDF 1724

Query: 1262 IQEYST 1279
            + E+S+
Sbjct: 1725 LMEFSS 1730


>ref|NP_033908.2| complement C3 [Mus musculus].
          Length = 1663

 Score =  139 bits (350), Expect = 5e-33
 Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 8/290 (2%)
 Frame = +2

Query: 422  EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 601
            E  K  EE ++ +   +C    G V  + M+I DI++++GF  +  DLE L S  DRY+S
Sbjct: 1372 ETAKKPEEAKNTMFLEICTKYLGDVDAT-MSILDISMMTGFAPDTKDLELLASGVDRYIS 1430

Query: 602  HFETEGPH-----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 763
             +E          +++Y + +  T  +C+ F   Q   +GL+QP S  +Y YYN E  C+
Sbjct: 1431 KYEMNKAFSNKNTLIIYLEKISHTEEDCLTFKVHQYFNVGLIQPGSVKVYSYYNLEESCT 1490

Query: 764  VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 943
             FY        LS LC +++C+CAE  C  Q+   +  L      R+  AC  P VDY +
Sbjct: 1491 RFYHPEKDDGMLSKLCHSEMCRCAEENCFMQQSQEKINL----NVRLDKAC-EPGVDYVY 1545

Query: 944  QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 1117
            + ++   +    F  +  +I QV+    D +  A Q R F+    CR  L L+ GK+YL+
Sbjct: 1546 KTELTNIELLDDFDEYTMTIQQVIKSGSD-EVQAGQQRKFISHIKCRNALKLQKGKKYLM 1604

Query: 1118 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDFIQ 1267
             GL       K +  Y++  + W+E  P    C+  ++++ C +L  F +
Sbjct: 1605 WGLSSDLWGEKPNTSYIIGKDTWVEHWPEAEECQDQKYQKQCEELGAFTE 1654


>ref|XP_003086840.1| PREDICTED: complement C3-like, partial [Mus musculus].
          Length = 1524

 Score =  116 bits (291), Expect = 4e-26
 Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 8/253 (3%)
 Frame = +2

Query: 422  EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 601
            E  K  EE ++ +   +C    G V  + M+I DI++++GF  +  DLE L S  DRY+S
Sbjct: 1281 ETAKKPEEAKNTMFLEICTKYLGDVDAT-MSILDISMMTGFAPDTKDLELLASGVDRYIS 1339

Query: 602  HFETEGPH-----VLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 763
             +E          +++Y + +  T  +C+ F   Q   +GL+QP S  +Y YYN E  C+
Sbjct: 1340 KYEMNKAFSNKNTLIIYLEKISHTEEDCLTFKVHQYFNVGLIQPGSVKVYSYYNLEESCT 1399

Query: 764  VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 943
             FY        LS LC +++C+CAE  C  Q+   +  L      R+  AC  P VDY +
Sbjct: 1400 RFYHPEKDDGMLSKLCHSEMCRCAEENCFMQQSQEKINL----NVRLDKAC-EPGVDYVY 1454

Query: 944  QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 1117
            + ++        F  +  +I QV+    D +  A Q R F+    CR  L L+ GK+YL+
Sbjct: 1455 KTELTNIKLLDDFDEYTMTIQQVIKSGSD-EVQAGQQRKFISHIKCRNALKLQKGKKYLM 1513

Query: 1118 MGLDGTTHDLKGD 1156
             GL   + DL G+
Sbjct: 1514 WGL---SSDLWGE 1523


>ref|NP_034536.1| complement C5 preproprotein [Mus musculus].
          Length = 1680

 Score = 96.7 bits (239), Expect = 4e-20
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 5/245 (2%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE--CVGF 676
            S  A+ DI+L +G  A   DL  L    D+ ++ ++ +  HV+L  +S+P SR+  CV F
Sbjct: 1423 SSHAVMDISLPTGIGANEEDLRALVEGVDQLLTDYQIKDGHVILQLNSIP-SRDFLCVRF 1481

Query: 677  GAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQ 856
               +   +G + PA+  +Y+Y+ P+ +C++ Y        L  +C    C C E  C + 
Sbjct: 1482 RIFELFQVGFLNPATFTVYEYHRPDKQCTMIYSISDTR--LQKVCEGAACTCVEADCAQL 1539

Query: 857  RRALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVK 1036
            +  ++  +      R + AC  P   YA++V++        F   + + T ++ +     
Sbjct: 1540 QAEVDLAIS--ADSRKEKAC-KPETAYAYKVRITSATEENVF--VKYTATLLVTYKTGEA 1594

Query: 1037 AAAAQARNFLVRASC-RLHLEPGKEYLIMGLD--GTTHDLKGDPQYLLDSNCWIEEMPSE 1207
            A       F+ + SC   +L  GK+YLIMG +     H+      Y LDS+ WIE  P++
Sbjct: 1595 ADENSEVTFIKKMSCTNANLVKGKQYLIMGKEVLQIKHNFSFKYIYPLDSSTWIEYWPTD 1654

Query: 1208 RLCRS 1222
              C S
Sbjct: 1655 TTCPS 1659


>ref|NP_032672.2| murinoglobulin-2 precursor [Mus musculus].
          Length = 1451

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 35/110 (31%), Positives = 53/110 (48%)
 Frame = +2

Query: 461  QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
            Q ++ I   G    S M IAD+ +LSGF   +  ++KL  L   ++S  E    +VLLY 
Sbjct: 1339 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLE--HISRTEVSNNNVLLYL 1396

Query: 641  DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
            D V        F   Q++++  +QPA   +YDYY  +      Y +P  S
Sbjct: 1397 DQVTNQTLAFSFIIQQDISVRNLQPAIVKVYDYYETDEVAYAEYSSPCSS 1446


>ref|NP_032671.2| murinoglobulin-1 precursor [Mus musculus].
          Length = 1476

 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 34/107 (31%), Positives = 51/107 (47%)
 Frame = +2

Query: 461  QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
            Q ++ I   G    S M IAD+ +LSGF   +  ++KL  L   +VS  E    +VL+Y 
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLERLE--HVSRTEVSNNNVLIYL 1421

Query: 641  DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 781
            D V        F   Q++ +  +QPA   +YDYY  +      Y +P
Sbjct: 1422 DQVTNQTLAFSFIIQQDIPVRNLQPAIVKVYDYYETDEMAFAEYSSP 1468


>ref|XP_001480324.2| PREDICTED: murinoglobulin-1-like [Mus musculus].
          Length = 1472

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/110 (31%), Positives = 52/110 (47%)
 Frame = +2

Query: 461  QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
            Q ++ I   G    S M IAD+ +LSGF   +  ++KL SL+   V   E    +VLLY 
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLESLAP--VRRTEVSSNNVLLYL 1421

Query: 641  DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
            D V +      F   Q+  +  +QPA   +YDYY  +      Y  P ++
Sbjct: 1422 DQVNSHTLAFSFIIQQDFLVRNLQPAMVKVYDYYETDEVAFAEYSNPCRT 1471


>ref|XP_922625.4| PREDICTED: murinoglobulin-1-like [Mus musculus].
          Length = 1472

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/110 (31%), Positives = 52/110 (47%)
 Frame = +2

Query: 461  QYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYF 640
            Q ++ I   G    S M IAD+ +LSGF   +  ++KL SL+   V   E    +VLLY 
Sbjct: 1364 QISLEISYTGSRPASNMVIADVKMLSGFIPLKPTVKKLESLAP--VRRTEVSSNNVLLYL 1421

Query: 641  DSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
            D V +      F   Q+  +  +QPA   +YDYY  +      Y  P ++
Sbjct: 1422 DQVNSHTLAFSFIIQQDFLVRNLQPAMVKVYDYYETDEVAFAEYSNPCRT 1471


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,007,626
Number of extensions: 1605481
Number of successful extensions: 7791
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7593
Number of HSP's successfully gapped: 11
Length of query: 476
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 371
Effective length of database: 12,463,779
Effective search space: 4624062009
Effective search space used: 4624062009
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003047
         (1428 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116561.1| complement C4 [Sus scrofa].                       838   0.0  
Alignment   gi|NP_999174.1| complement C3 [Sus scrofa].                          130   2e-30
Alignment   gi|NP_001001646.1| complement C5 [Sus scrofa].                       109   4e-24
Alignment   gi|XP_003354119.1| PREDICTED: complement C3-like [Sus scrofa].       100   2e-21
Alignment   gi|XP_003123534.2| PREDICTED: c3 and PZP-like alpha-2-macroglob...    74   3e-13
Alignment   gi|XP_001925210.2| PREDICTED: alpha-2-macroglobulin [Sus scrofa].     54   2e-07
Alignment   gi|XP_001925235.3| PREDICTED: LOW QUALITY PROTEIN: alpha-2-macr...    54   3e-07
Alignment   gi|XP_003355629.1| PREDICTED: ovostatin homolog 2-like, partial...    50   2e-06
Alignment   gi|XP_001927580.2| PREDICTED: CD109 antigen isoform 1 [Sus scro...    50   3e-06

>ref|NP_001116561.1| complement C4 [Sus scrofa].
          Length = 1741

 Score =  838 bits (2165), Expect = 0.0
 Identities = 415/426 (97%), Positives = 416/426 (97%)
 Frame = +2

Query: 2    AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 181
            AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN
Sbjct: 1311 AYWILSHTTEEKELNVTLSSMSRGGFKSHVVRLTNHQVKGLEEELQFSLGSKINVKVGGN 1370

Query: 182  SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANXXXXXXXXXXLPAQDDPGA 361
            SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEAN          LPAQDDPGA
Sbjct: 1371 SKGTLKILRAYNVIDLKNTTCQDLQIEVTVKGHVEYMLEANEDYEDYEYEDLPAQDDPGA 1430

Query: 362  HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 541
            HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG
Sbjct: 1431 HSQPVTPLQLFDGRRNRRRREAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSG 1490

Query: 542  FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 721
            FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS
Sbjct: 1491 FYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPAS 1550

Query: 722  AVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 901
            AVLY+YYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR
Sbjct: 1551 AVLYEYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYR 1610

Query: 902  MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1081
            MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC
Sbjct: 1611 MKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASC 1670

Query: 1082 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
            RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF
Sbjct: 1671 RLHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1730

Query: 1262 IQEYST 1279
            IQEYST
Sbjct: 1731 IQEYST 1736


>ref|NP_999174.1| complement C3 [Sus scrofa].
          Length = 1661

 Score =  130 bits (327), Expect = 2e-30
 Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 8/288 (2%)
 Frame = +2

Query: 422  EAPKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS 601
            E  K  +E +S +   +C    G    + M+I DI++++GF  +  DL+ L++  DRY+S
Sbjct: 1370 EPVKKPQEAKSSMVLDICTRYLGNQDAT-MSILDISMMTGFSPDTEDLKLLSTGVDRYIS 1428

Query: 602  HFE-----TEGPHVLLYFDSVP-TSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCS 763
             +E     +    +++Y D +  T  +C+ F   Q   +GL+QP S  +Y YYN +  C+
Sbjct: 1429 KYELNKALSNKNTLIIYLDKISHTLEDCISFKVHQYFNVGLIQPGSVKVYSYYNLDESCT 1488

Query: 764  VFYGAPSKSKFLSTLCSADVCQCAEGKCPRQRRALERGLQDLDGYRMKFACYSPRVDYAF 943
             FY    +   L+ LC  ++C+CAE  C       E  L D    R++ AC  P VDY +
Sbjct: 1489 RFYHPEKEDGMLNKLCHKEMCRCAEENCFMHHDEEEVTLDD----RLERAC-EPGVDYVY 1543

Query: 944  QVKVLREDSRAAFRLFETSITQVLHFTKDVKAAAAQARNFLVRASCR--LHLEPGKEYLI 1117
            + ++L+++    F  +   I Q++    D +    Q R F+    CR  L L+ G  YL+
Sbjct: 1544 KTRLLKKELSDDFDDYIMVIEQIIKSGSD-EVQVGQERRFISHIKCREALKLKEGGHYLV 1602

Query: 1118 MGLDGTTHDLKGDPQYLLDSNCWIEEMPSERLCRSTRHREPCAQLRDF 1261
             G+       K +  Y++  + W+E  P   +C+   +++ C  L +F
Sbjct: 1603 WGVSSDLWGEKPNISYIIGKDTWVELWPDGDVCQDEENQKQCQDLANF 1650


>ref|NP_001001646.1| complement C5 [Sus scrofa].
          Length = 1677

 Score =  109 bits (272), Expect = 4e-24
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 4/244 (1%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRE-CVGFG 679
            S  A+ DI+L +G  A   DL  L    D+ ++ +E +  HV+   +S+P++   CV F 
Sbjct: 1417 SSHAVMDISLPTGVNANAEDLRALVEGVDQLLTDYEIKDGHVICQLNSIPSNNFLCVRFR 1476

Query: 680  AVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPRQR 859
             V+   +G + PA+  +Y+Y+ P+ +C++FY + S++K L  +C    C+C E    R +
Sbjct: 1477 IVELFQVGFLSPATFTVYEYHRPDKQCTMFY-SMSQTK-LQKVCEGVTCKCVE--ADRGQ 1532

Query: 860  RALERGLQDLDGYRMKFACYSPRVDYAFQVKVLREDSRAAFRLFETSITQVLHFTKDVKA 1039
               E  L      R + AC  P + Y ++VK++     +AF  +  S+  V    + V  
Sbjct: 1533 MQTEVDLTISVNTRKETAC-KPEIAYVYKVKIIAMTEESAFVKYTASLLDVYKAGEAVAE 1591

Query: 1040 AAAQARNFLVRASC-RLHLEPGKEYLIMGLDG--TTHDLKGDPQYLLDSNCWIEEMPSER 1210
              ++   F+ + +C   +LE GK+YLIMG +     H+      Y LDS+ WIE  P++ 
Sbjct: 1592 KGSEI-TFIKKTTCTNANLEKGKQYLIMGKEALQIKHNFNFKYIYPLDSSTWIEYWPTDT 1650

Query: 1211 LCRS 1222
             C S
Sbjct: 1651 ACPS 1654


>ref|XP_003354119.1| PREDICTED: complement C3-like [Sus scrofa].
          Length = 1525

 Score =  100 bits (250), Expect = 2e-21
 Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 9/242 (3%)
 Frame = +2

Query: 509  MAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE----GPHVLLYFDSVPTSRECV-G 673
            M I +++LL+GFY  + DL++LTS  +RY   +ET+       V+LY + +    + V G
Sbjct: 1263 MTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLG 1322

Query: 674  FGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVCQCAEGKCPR 853
            F   + +    +Q A   +YDYY P  +CS FY  P++   L  +C  DVC+CAE +CP 
Sbjct: 1323 FRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPS 1382

Query: 854  QRRALERGLQDLDGYRMKFACYSPRVDYAFQVKV--LREDSRAAFRLFETSITQVLHFTK 1027
             ++      Q+     ++ A     VD+ ++ ++  +   +   +  +   +  ++    
Sbjct: 1383 PKKDSNHVRQE----ELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGT 1438

Query: 1028 DVKAAAAQARNFLVRASCR--LHLEPGKEYLIMGLDGTTHDLKGDPQYLLDSNCWIEEMP 1201
            D    +   + F+   +C   L LE  + YLIMG       +K +  ++L    ++   P
Sbjct: 1439 D-SVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWP 1497

Query: 1202 SE 1207
            +E
Sbjct: 1498 AE 1499


>ref|XP_003123534.2| PREDICTED: c3 and PZP-like alpha-2-macroglobulin domain-containing
            protein 8 [Sus scrofa].
          Length = 1907

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
 Frame = +2

Query: 446  QESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVS--HFETEG 619
            QE +V   VC  R    G S MA+ ++ LLSGF  +   LE+L  L DR+ S   +E  G
Sbjct: 1586 QEYQVTLEVCT-RWLHAGSSNMAVLEVPLLSGFRVDVESLEQL--LLDRHFSLKRYEVAG 1642

Query: 620  PHVLLYFDSVPTS-RECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKF 796
              VL YFD +P+    C+ F A++E  +G        +YDYY P  + + FY   + S  
Sbjct: 1643 RRVLFYFDEIPSQCLTCIRFRALREHVVGRTSALPISVYDYYEPAFEATRFYNVSAHSPL 1702

Query: 797  LSTLCSADVCQCAEGKCPRQRRALERG 877
               LC+   C   E       RAL +G
Sbjct: 1703 AWELCAGPACNEVE-------RALAQG 1722


>ref|XP_001925210.2| PREDICTED: alpha-2-macroglobulin [Sus scrofa].
          Length = 1490

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)
 Frame = +2

Query: 437  AEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETE 616
            A +   +VQ  + I   G+   S M I D+ ++SGF   ++ ++KL       +   E  
Sbjct: 1368 AVDAHRKVQIHINISYTGERPSSNMVIVDVKMVSGFIPVKSSVKKLQERPQ--IQRTEVN 1425

Query: 617  GPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSK 793
              HVL+YF+ + +      F   Q++ +  ++PA+   YDYY  E      Y  P  ++
Sbjct: 1426 VNHVLIYFEELTSEVLSFSFSVEQDIQVKNLKPATVKAYDYYETEEFAIEEYSVPCSAE 1484


>ref|XP_001925235.3| PREDICTED: LOW QUALITY PROTEIN: alpha-2-macroglobulin [Sus scrofa].
          Length = 1476

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 35/118 (29%), Positives = 53/118 (44%)
 Frame = +2

Query: 428  PKVAEEQESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHF 607
            P    +  +  Q +V +   G    S MAI D+ ++SGF   +  + K+   SD  VS  
Sbjct: 1353 PTCEPKAHTSFQISVNVSYTGSRPASHMAIVDVKMVSGFIXLKPTV-KMLERSDN-VSRT 1410

Query: 608  ETEGPHVLLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAP 781
            E    HVL+Y D V      + F   Q++ +  ++PA   +YDYY         Y AP
Sbjct: 1411 EVSSNHVLIYLDKVTDQSLSMSFTVTQDIPVRDLKPAIVKVYDYYETAEFAIAEYNAP 1468


>ref|XP_003355629.1| PREDICTED: ovostatin homolog 2-like, partial [Sus scrofa].
          Length = 427

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 31/114 (27%), Positives = 50/114 (43%)
 Frame = +2

Query: 449 ESRVQYTVCIWRNGQVGLSGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHV 628
           +S    T+ +   G    S M + D+ +LSGF    + +E+L S  +  V   E +  HV
Sbjct: 313 QSHFDLTITLQYTGIHNNSNMVLVDVKMLSGFTPVMSSIEELES--NGQVMKSEVKNDHV 370

Query: 629 LLYFDSVPTSRECVGFGAVQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKS 790
           L + ++V        F   Q   +  +QPA  ++YDYY  +      Y   S S
Sbjct: 371 LFFLENVWGIANSFSFSVEQSNRVSNIQPAPVMVYDYYEKDEYALASYNINSVS 424


>ref|XP_001927580.2| PREDICTED: CD109 antigen isoform 1 [Sus scrofa].
          Length = 1144

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +2

Query: 503  SGMAIADITLLSGFYAERADLEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFGA 682
            SGMA+ ++ LLSGF      L    +L        E +   + LY DSV  ++ CV   A
Sbjct: 1006 SGMALMEVNLLSGFTVPSDSLPLSETLKK-----VEYDVGKLNLYLDSVNETQFCVDIPA 1060

Query: 683  VQEVAIGLVQPASAVLYDYYNPEHKCSVFYGAPSKSKFLSTLCSADVC--QCAEGKCPR 853
            V+   +   Q AS  + DYY P  + +  Y + +K      L S D+C    A G C R
Sbjct: 1061 VRNFRVSNTQDASVSIVDYYEPRRRAARSYNSRAK------LSSCDLCGDMNACGGCDR 1113


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,612,016
Number of extensions: 1280924
Number of successful extensions: 7249
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6909
Number of HSP's successfully gapped: 9
Length of query: 476
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 373
Effective length of database: 8,779,541
Effective search space: 3274768793
Effective search space used: 3274768793
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003047
         (1428 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         511   e-142

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  511 bits (258), Expect = e-142
 Identities = 258/258 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1156     cccccagtacctgctggactcgaactgctggatcgaggagatgccctctgagcgcctgtg 1215
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729329 cccccagtacctgctggactcgaactgctggatcgaggagatgccctctgagcgcctgtg 27729270

                                                                            
Query: 1216     ccggagcacccgccatcgggagccctgtgcccagctcagagacttcatccaggagtacag 1275
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729269 ccggagcacccgccatcgggagccctgtgcccagctcagagacttcatccaggagtacag 27729210

                                                                            
Query: 1276     cacgcagggctgccaggtgtaagggctgctctgctgcctcctccaggaaaagtcacccct 1335
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729209 cacgcagggctgccaggtgtaagggctgctctgctgcctcctccaggaaaagtcacccct 27729150

                                                                            
Query: 1336     ggatccttgcttggcccagtcccctgaacatagccccgggcaggagcaggcacccaataa 1395
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729149 ggatccttgcttggcccagtcccctgaacatagccccgggcaggagcaggcacccaataa 27729090

                                  
Query: 1396     aggcttttggcaacagag 1413
                ||||||||||||||||||
Sbjct: 27729089 aggcttttggcaacagag 27729072



 Score =  365 bits (184), Expect = 4e-98
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                            
Query: 294      tggaggcgaacgaggactacgaggactacgagtacgaggaccttcctgcccaggatgacc 353
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 27733236 tggaggcgaacgaggactacgaggaatacgagtacgaggaccttcctgcccaggatgacc 27733177

                                                                            
Query: 354      ctggggcccactcccagcccgtgacgcccctgcagctgtttgacggccggaggaaccgcc 413
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733176 ctggggcccactcccagcccgtgacgcccctgcagctgtttgacggccggaggaaccgcc 27733117

                                                                            
Query: 414      gcaggagggaggcacccaaggtggccgaagagcaggaatccagggtgcagtacaccgtgt 473
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733116 gcaggagggaggcacccaaggtggccgaagagcaggaatccagggtgcagtacaccgtgt 27733057

                        
Query: 474      gcatctgg 481
                ||||||||
Sbjct: 27733056 gcatctgg 27733049



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgcgtactggatcttgtcgcacaccaccgaggagaaggagctcaacgtgaccctcagctc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27735036 tgcgtactggatcttgtcgcacaccaccgaggagaaggagctcaacgtgaccctcagctc 27734977

                                                                            
Query: 61       catgtcccgcggggggttcaagtcccacgtggtgcggctgaccaaccaccaagtgaaagg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27734976 catgtcccgcggggggttcaagtcccacgtggtgcggctgaccaaccaccaagtgaaagg 27734917

                                   
Query: 121      cctggaggaggagctgcag 139
                |||||||||||||||||||
Sbjct: 27734916 cctggaggaggagctgcag 27734898



 Score =  264 bits (133), Expect = 1e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1023     ctaaggatgtcaaggccgctgctgctcaggcccgaaacttcctggtgcgagcctcttgcc 1082
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729607 ctaaggatgtcaaggccgctgctgctcaggcccgaaacttcctggtgcgagcctcttgcc 27729548

                                                                            
Query: 1083     gccttcacttagaacctgggaaagaatatctgatcatgggcctggacgggaccacccacg 1142
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729547 gccttcacttagaacctgggaaagaatatctgatcatgggcctggacgggaccacccacg 27729488

                             
Query: 1143     acctcaagggaga 1155
                |||||||||||||
Sbjct: 27729487 acctcaagggaga 27729475



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                            
Query: 646      ggtccctacctcccgggagtgtgtgggctttggagccgtgcaggaggtggccatcgggct 705
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730645 ggtccctacctcccgggagtgtgtgggctttggagccgtgcaggaggtggccatcgggct 27730586

                                                            
Query: 706      ggtgcagccggccagcgccgtcctgtacgactactacaaccccg 749
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730585 ggtgcagccggccagcgccgtcctgtacgactactacaaccccg 27730542



 Score =  198 bits (100), Expect = 6e-48
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                            
Query: 839      ggcaagtgccctagacagcgccgggccctggagcgggggctgcaggacctggatggttac 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730234 ggcaagtgccctagacagcgccgggccctggagcgggggctgcaggacctggatggttac 27730175

                                                        
Query: 899      aggatgaagtttgcctgctactcgccccgcgtggattacg 938
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730174 aggatgaagtttgcctgctactcgccccgcgtggattacg 27730135



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                            
Query: 198      agatcctccgtgcctacaatgtcatagacctgaagaacaccacctgccaggaccttcaga 257
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27733409 agatcctccgtgcctacaatgtcatagacctgaagaacaccacctgccaggaccttcaga 27733350

                                                    
Query: 258      tcgaagtgacggtcaagggccacgtcgagtacatgt 293
                ||||||||||||||||||||||||||||||||||||
Sbjct: 27733349 tcgaagtgacggtcaagggccacgtcgagtacatgt 27733314



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 749      gagcacaaatgttctgtgttttacggggcgccaagtaagagcaaattcttgtccacattg 808
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730407 gagcacaaatgttctgtgttttacggggcgccaagtaagagcaaattcttgtccacattg 27730348

                                                
Query: 809      tgctcggctgatgtctgccagtgcgccgaggg 840
                ||||||||||||||||||||||||||||||||
Sbjct: 27730347 tgctcggctgatgtctgccagtgcgccgaggg 27730316



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 480      ggcggaacggccaggtggggctgtcgggcatggccatcgcggacatcaccctcctgagtg 539
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27732934 ggcggaacggccaggtggggctgtcgggcatggccatcgcggacatcaccctcctgagtg 27732875

                                                
Query: 540      gattctatgccgagcgggctgacctggagaag 571
                ||||||||||||||||||||||||||||||||
Sbjct: 27732874 gattctatgccgagcgggctgacctggagaag 27732843



 Score =  170 bits (86), Expect = 1e-39
 Identities = 89/90 (98%)
 Strand = Plus / Minus

                                                                            
Query: 938      gccttccaggtgaaggttctccgagaagacagcagagctgctttccgcctctttgagacg 997
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27729968 gccttccaggtgaaggttctccgagaagacagcagagctgctttccgcctctttgagacg 27729909

                                              
Query: 998      agcatcacccaagtcctacatttcactaag 1027
                ||||||||||||||||||||||||| ||||
Sbjct: 27729908 agcatcacccaagtcctacatttcagtaag 27729879



 Score =  157 bits (79), Expect = 2e-35
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                            
Query: 570      agctgacctccctctctgaccggtacgtcagtcactttgagaccgaggggccccatgtcc 629
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27732695 agctgacctccctctctgaccggtacgtcagtcactttgagaccgaggggccccatgtcc 27732636

                                   
Query: 630      tgctgtacttcgactcggt 648
                |||||||||||||||||||
Sbjct: 27732635 tgctgtacttcgactcggt 27732617



 Score =  123 bits (62), Expect = 3e-25
 Identities = 62/62 (100%)
 Strand = Plus / Minus

                                                                            
Query: 138      agttttccttgggcagcaagattaatgtgaaggtgggaggaaacagcaaaggaaccttga 197
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27734276 agttttccttgggcagcaagattaatgtgaaggtgggaggaaacagcaaaggaaccttga 27734217

                  
Query: 198      ag 199
                ||
Sbjct: 27734216 ag 27734215


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,460,360
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 12
Length of query: 1428
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1407
Effective length of database: 2,808,413,156
Effective search space: 3951437310492
Effective search space used: 3951437310492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)