Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003050
(1223 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039604.1| GDP-L-fucose synthase [Bos taurus]. 615 e-176
Alignment gi|NP_001192993.1| UDP-glucuronic acid decarboxylase 1 [Bos tau... 71 2e-12
Alignment gi|XP_002691390.1| PREDICTED: UDP-glucuronate decarboxylase 1-l... 71 2e-12
Alignment gi|NP_001094629.1| dTDP-D-glucose 4,6-dehydratase [Bos taurus]. 54 4e-07
>ref|NP_001039604.1| GDP-L-fucose synthase [Bos taurus].
Length = 321
Score = 615 bits (1587), Expect = e-176
Identities = 294/319 (92%), Positives = 311/319 (97%)
Frame = +2
Query: 191 EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ 370
+P+ + RILVTGGSGLVGRAIQKVV DGARLPGEDWVFVSSKDADLT+AAQTRALF++VQ
Sbjct: 3 DPRGTRRILVTGGSGLVGRAIQKVVEDGARLPGEDWVFVSSKDADLTDAAQTRALFQQVQ 62
Query: 371 PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT 550
PTHVIHLAAMVGGLFRN+KYNLDFWRKN+HINDNVLHSAFEVG RKVVSCLSTCIFPDKT
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNIHINDNVLHSAFEVGVRKVVSCLSTCIFPDKT 122
Query: 551 TYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI 730
TYPIDETMIH+GPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNF+I
Sbjct: 123 TYPIDETMIHNGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFSI 182
Query: 731 EDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL 910
EDGHVLPGLIHKVHLAKS GSALTVWGTGRPRRQFIYSLDLARLF+W LREYD+VEPIIL
Sbjct: 183 EDGHVLPGLIHKVHLAKSSGSALTVWGTGRPRRQFIYSLDLARLFIWALREYDEVEPIIL 242
Query: 911 SVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDFRFTPFQ 1090
SVGEEDEVS++EAAEAVVEAMDFHGEV FDTTKSDGQFKKTASN+KLRAYLPDFRFTPF+
Sbjct: 243 SVGEEDEVSVQEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNAKLRAYLPDFRFTPFK 302
Query: 1091 XAVKETCAWFTDNYEEARK 1147
AVKETCAWFTDNYE+ARK
Sbjct: 303 QAVKETCAWFTDNYEQARK 321
>ref|NP_001192993.1| UDP-glucuronic acid decarboxylase 1 [Bos taurus].
Length = 420
Score = 70.9 bits (172), Expect = 2e-12
Identities = 84/321 (26%), Positives = 129/321 (40%), Gaps = 12/321 (3%)
Frame = +2
Query: 209 RILVTGGSGLVGRAI-QKVVADGARLPGEDWVFVSSK----------DADLTNAAQTRAL 355
RILVTGG+G VG + K++ DG + D F K + +L N L
Sbjct: 90 RILVTGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 356 FEKVQPTHVIHLAAMVGGLFRNMKYN-LDFWRKNVHINDNVLHSAFEVGARKVVSCLSTC 532
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 150 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 204
Query: 533 IFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP 712
++ D +P E P Y KR+ + AY +Q G N FGP
Sbjct: 205 VYGDPEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
Query: 713 HDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQ 892
+ N DG V+ I L +G LTV+G+G R F Y DL L L +
Sbjct: 265 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVN-GLVALMNSNV 317
Query: 893 VEPIILSVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDF 1072
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 318 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 375
Query: 1073 RFTPFQXAVKETCAWFTDNYE 1135
P + + + +F E
Sbjct: 376 PVVPLEEGLNKAIHYFRKELE 396
>ref|XP_002691390.1| PREDICTED: UDP-glucuronate decarboxylase 1-like [Bos taurus].
Length = 420
Score = 70.9 bits (172), Expect = 2e-12
Identities = 84/321 (26%), Positives = 129/321 (40%), Gaps = 12/321 (3%)
Frame = +2
Query: 209 RILVTGGSGLVGRAI-QKVVADGARLPGEDWVFVSSK----------DADLTNAAQTRAL 355
RILVTGG+G VG + K++ DG + D F K + +L N L
Sbjct: 90 RILVTGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 356 FEKVQPTHVIHLAAMVGGLFRNMKYN-LDFWRKNVHINDNVLHSAFEVGARKVVSCLSTC 532
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 150 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 204
Query: 533 IFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP 712
++ D +P E P Y KR+ + AY +Q G N FGP
Sbjct: 205 VYGDPEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
Query: 713 HDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQ 892
+ N DG V+ I L +G LTV+G+G R F Y DL L L +
Sbjct: 265 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVN-GLVALMNSNV 317
Query: 893 VEPIILSVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDF 1072
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 318 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 375
Query: 1073 RFTPFQXAVKETCAWFTDNYE 1135
P + + + +F E
Sbjct: 376 PVVPLEEGLNKAIHYFRKELE 396
>ref|NP_001094629.1| dTDP-D-glucose 4,6-dehydratase [Bos taurus].
Length = 355
Score = 53.5 bits (127), Expect = 4e-07
Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 28/336 (8%)
Frame = +2
Query: 209 RILVTGGSGLVG-RAIQKVVADGAR-----LPGEDWVF-------VSSKD------ADLT 331
R+LVTGG+G + I +V D L D+ +S+K D+
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 332 NAAQTRALFEKVQPTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKV 511
++ + LFE + V+H AA + + +F NV+ ++ +A E K
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTH-VDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKF 137
Query: 512 VSCLSTCIFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVI 691
+ + ++ DE+ P Y+ +K + ++Y++Q+
Sbjct: 138 IYVSTDEVYGGSLDKEFDESS-----PKQPTNPYASSKAAAECFVQSYWEQYKFPVVITR 192
Query: 692 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLW 871
+NV+GPH V+P I + + GTG R F+Y+ D+ FL
Sbjct: 193 SSNVYGPHQY----PEKVIPKFISLLQ----HNRKCCIHGTGLQTRNFLYATDVVEAFLT 244
Query: 872 VLREYDQVEPIILSVGEEDEVSIREAAEAVVE---------AMDFHGEVIFDTTKSDGQF 1024
VL++ E I ++G E+S+ + A+ +++ M+ + + D +D ++
Sbjct: 245 VLKKGKPGE--IYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRY 302
Query: 1025 KKTASNSKLRAYLPDFRFTPFQXAVKETCAWFTDNY 1132
+ + P P++ +K+T W+ +N+
Sbjct: 303 PMKSEKIHGLGWRPK---VPWKEGIKKTIEWYRENF 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,081,238
Number of extensions: 1643718
Number of successful extensions: 8209
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8103
Number of HSP's successfully gapped: 4
Length of query: 407
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,207,134
Effective search space: 4290554468
Effective search space used: 4290554468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003050
(1223 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532346.2| PREDICTED: similar to GDP-L-fucose synthetase (... 613 e-175
Alignment gi|XP_538439.2| PREDICTED: similar to UDP-glucuronate decarboxy... 71 2e-12
Alignment gi|XP_542640.2| PREDICTED: similar to dTDP-D-glucose 4,6-dehydr... 53 5e-07
>ref|XP_532346.2| PREDICTED: similar to GDP-L-fucose synthetase (FX protein) (Red cell
NADP(H)-binding protein)
(GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase)
[Canis familiaris].
Length = 321
Score = 613 bits (1580), Expect = e-175
Identities = 296/319 (92%), Positives = 308/319 (96%)
Frame = +2
Query: 191 EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ 370
EP S RILVTGGSGLVGRAIQKVVADGA LPGEDWVFVSSKDADLT+AAQTRALFEKV+
Sbjct: 3 EPGGSVRILVTGGSGLVGRAIQKVVADGAGLPGEDWVFVSSKDADLTDAAQTRALFEKVR 62
Query: 371 PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT 550
PTHVIHLAAMVGGLFRN+KYNLDFWRKNVHINDNVLHSAFEVG RKVVSCLSTCIFPDKT
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEVGVRKVVSCLSTCIFPDKT 122
Query: 551 TYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI 730
TYPIDETMIH+GPPH+SNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI
Sbjct: 123 TYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI 182
Query: 731 EDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL 910
EDGHVLPGLIHKVHLAKS GSALTVWGTG+PRRQFIYSLDLARLF+WVLREY++VEPIIL
Sbjct: 183 EDGHVLPGLIHKVHLAKSSGSALTVWGTGKPRRQFIYSLDLARLFIWVLREYNEVEPIIL 242
Query: 911 SVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDFRFTPFQ 1090
SVGEEDEVSI+EAAEAVVEAMDFHGEV FDTTKSDGQFKKTASN KLR YLPDFRFTPF+
Sbjct: 243 SVGEEDEVSIQEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNGKLRTYLPDFRFTPFK 302
Query: 1091 XAVKETCAWFTDNYEEARK 1147
AVKETCAWFT NYE+ARK
Sbjct: 303 QAVKETCAWFTHNYEQARK 321
>ref|XP_538439.2| PREDICTED: similar to UDP-glucuronate decarboxylase 1 [Canis
familiaris].
Length = 531
Score = 70.9 bits (172), Expect = 2e-12
Identities = 83/321 (25%), Positives = 129/321 (40%), Gaps = 12/321 (3%)
Frame = +2
Query: 209 RILVTGGSGLVGRAI-QKVVADGARLPGEDWVFVSSK----------DADLTNAAQTRAL 355
RIL+TGG+G VG + K++ DG + D F K + +L N L
Sbjct: 201 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 260
Query: 356 FEKVQPTHVIHLAAMVGGLFRNMKYN-LDFWRKNVHINDNVLHSAFEVGARKVVSCLSTC 532
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 261 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 315
Query: 533 IFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP 712
++ D +P E P Y KR+ + AY +Q G N FGP
Sbjct: 316 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 375
Query: 713 HDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQ 892
+ N DG V+ I L +G LTV+G+G R F Y DL L L +
Sbjct: 376 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVN-GLVALMNSNV 428
Query: 893 VEPIILSVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDF 1072
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 429 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIRKAKMMLAWE 486
Query: 1073 RFTPFQXAVKETCAWFTDNYE 1135
P + + + +F E
Sbjct: 487 PVVPLEEGLNKAIHYFRKELE 507
>ref|XP_542640.2| PREDICTED: similar to dTDP-D-glucose 4,6-dehydratase [Canis
familiaris].
Length = 514
Score = 53.1 bits (126), Expect = 5e-07
Identities = 72/338 (21%), Positives = 141/338 (41%), Gaps = 30/338 (8%)
Frame = +2
Query: 209 RILVTGGSGLVG-RAIQKVVADGAR-----LPGEDWVF-------VSSKD------ADLT 331
R+LVTGG+G + I +V D L D+ +S+K D+
Sbjct: 178 RLLVTGGAGFIASHVIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 237
Query: 332 NAAQTRALFEKVQPTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKV 511
N+ + LFE + V+H AA + + +F NV+ ++ +A E K
Sbjct: 238 NSHFVKLLFETEKIDIVLHFAAQTH-VDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKF 296
Query: 512 VSCLSTCIFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVI 691
+ + ++ DE+ P Y+ +K + ++Y++++ F AVI
Sbjct: 297 IYVSTDEVYGGSLDKEFDESS-----PKQPTNPYASSKAAAECFVQSYWERY--KFPAVI 349
Query: 692 P--TNVFGPHDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLF 865
+NV+GPH V+P I + + G+G R F+Y+ D+ F
Sbjct: 350 TRSSNVYGPHQY----PEKVIPKFISLLQ----HNRKCCIHGSGLQTRNFLYATDVVEAF 401
Query: 866 LWVLREYDQVEPIILSVGEEDEVSIREAAEAVVE---------AMDFHGEVIFDTTKSDG 1018
L VL++ E I ++G E+S+ + A+ +++ M+ + + D +D
Sbjct: 402 LTVLKKGKPGE--IYNIGTNFEMSVLQLAKELIQLIKETSSESEMETWVDYVNDRPTNDM 459
Query: 1019 QFKKTASNSKLRAYLPDFRFTPFQXAVKETCAWFTDNY 1132
++ + + + P P++ +K+T W+ +N+
Sbjct: 460 RYPMKSEKIQGLGWRPK---VPWKEGIKKTIDWYRENF 494
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,186,735
Number of extensions: 1696005
Number of successful extensions: 8229
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8154
Number of HSP's successfully gapped: 3
Length of query: 407
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 302
Effective length of database: 15,374,224
Effective search space: 4643015648
Effective search space used: 4643015648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003050
(1223 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003304.1| GDP-L-fucose synthase [Homo sapiens]. 614 e-176
Alignment gi|NP_079352.2| UDP-glucuronic acid decarboxylase 1 [Homo sapie... 71 2e-12
Alignment gi|NP_055120.1| dTDP-D-glucose 4,6-dehydratase [Homo sapiens]. 52 1e-06
>ref|NP_003304.1| GDP-L-fucose synthase [Homo sapiens].
Length = 321
Score = 614 bits (1584), Expect = e-176
Identities = 296/319 (92%), Positives = 310/319 (97%)
Frame = +2
Query: 191 EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ 370
EPQ S RILVTGGSGLVG+AIQKVVADGA LPGEDWVFVSSKDADLT+ AQTRALFEKVQ
Sbjct: 3 EPQGSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQ 62
Query: 371 PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT 550
PTHVIHLAAMVGGLFRN+KYNLDFWRKNVH+NDNVLHSAFEVGARKVVSCLSTCIFPDKT
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKT 122
Query: 551 TYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI 730
TYPIDETMIH+GPPH+SNFGYSYAKRMIDVQNRAYFQQ+GCTFTAVIPTNVFGPHDNFNI
Sbjct: 123 TYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNI 182
Query: 731 EDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL 910
EDGHVLPGLIHKVHLAKS GSALTVWGTG PRRQFIYSLDLA+LF+WVLREY++VEPIIL
Sbjct: 183 EDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIIL 242
Query: 911 SVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDFRFTPFQ 1090
SVGEEDEVSI+EAAEAVVEAMDFHGEV FDTTKSDGQFKKTASNSKLR YLPDFRFTPF+
Sbjct: 243 SVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFK 302
Query: 1091 XAVKETCAWFTDNYEEARK 1147
AVKETCAWFTDNYE+ARK
Sbjct: 303 QAVKETCAWFTDNYEQARK 321
>ref|NP_079352.2| UDP-glucuronic acid decarboxylase 1 [Homo sapiens].
Length = 420
Score = 70.9 bits (172), Expect = 2e-12
Identities = 83/321 (25%), Positives = 129/321 (40%), Gaps = 12/321 (3%)
Frame = +2
Query: 209 RILVTGGSGLVGRAI-QKVVADGARLPGEDWVFVSSK----------DADLTNAAQTRAL 355
RIL+TGG+G VG + K++ DG + D F K + +L N L
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 356 FEKVQPTHVIHLAAMVGGLFRNMKYN-LDFWRKNVHINDNVLHSAFEVGARKVVSCLSTC 532
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 150 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 204
Query: 533 IFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP 712
++ D +P E P Y KR+ + AY +Q G N FGP
Sbjct: 205 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
Query: 713 HDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQ 892
+ N DG V+ I L +G LTV+G+G R F Y DL L L +
Sbjct: 265 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVN-GLVALMNSNV 317
Query: 893 VEPIILSVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDF 1072
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 318 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 375
Query: 1073 RFTPFQXAVKETCAWFTDNYE 1135
P + + + +F E
Sbjct: 376 PVVPLEEGLNKAIHYFRKELE 396
>ref|NP_055120.1| dTDP-D-glucose 4,6-dehydratase [Homo sapiens].
Length = 350
Score = 51.6 bits (122), Expect = 1e-06
Identities = 68/336 (20%), Positives = 136/336 (40%), Gaps = 28/336 (8%)
Frame = +2
Query: 209 RILVTGGSGLVG-RAIQKVVADGAR-----LPGEDWVF-------VSSKD------ADLT 331
R+LVTGG+G + I +V D L D+ +S+K D+
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 332 NAAQTRALFEKVQPTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKV 511
++ + LFE + V+H AA + + +F NV+ ++ +A E K
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTH-VDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKF 137
Query: 512 VSCLSTCIFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVI 691
+ + ++ DE+ P Y+ +K + ++Y++Q+
Sbjct: 138 IYVSTDEVYGGSLDKEFDESS-----PKQPTNPYASSKAAAECFVQSYWEQYKFPVVITR 192
Query: 692 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLW 871
+NV+GPH V+P I + + G+G R F+Y+ D+ FL
Sbjct: 193 SSNVYGPHQY----PEKVIPKFISLLQ----HNRKCCIHGSGLQTRNFLYATDVVEAFLT 244
Query: 872 VLREYDQVEPIILSVGEEDEVSIREAAEAVVE---------AMDFHGEVIFDTTKSDGQF 1024
VL++ E I ++G E+S+ + A+ +++ M+ + + D +D ++
Sbjct: 245 VLKKGKPGE--IYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRY 302
Query: 1025 KKTASNSKLRAYLPDFRFTPFQXAVKETCAWFTDNY 1132
+ + P P++ +K+T W+ +N+
Sbjct: 303 PMKSEKIHGLGWRPK---VPWKEGIKKTIEWYRENF 335
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,929,331
Number of extensions: 1632463
Number of successful extensions: 7642
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7578
Number of HSP's successfully gapped: 3
Length of query: 407
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,835,944
Effective search space: 4480455088
Effective search space used: 4480455088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003050
(1223 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112478.1| GDP-L-fucose synthase [Mus musculus]. 604 e-173
Alignment gi|NP_080706.1| UDP-glucuronic acid decarboxylase 1 [Mus muscul... 71 2e-12
Alignment gi|NP_083854.3| dTDP-D-glucose 4,6-dehydratase [Mus musculus]. 58 1e-08
>ref|NP_112478.1| GDP-L-fucose synthase [Mus musculus].
Length = 321
Score = 604 bits (1558), Expect = e-173
Identities = 291/319 (91%), Positives = 308/319 (96%)
Frame = +2
Query: 191 EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ 370
EP S RILVTGGSGLVGRAIQKVVADGA LPGE+WVFVSSKDADLT+AAQT+ALF+KVQ
Sbjct: 3 EPHGSMRILVTGGSGLVGRAIQKVVADGAGLPGEEWVFVSSKDADLTDAAQTQALFQKVQ 62
Query: 371 PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT 550
PTHVIHLAAMVGGLFRN+KYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT
Sbjct: 63 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT 122
Query: 551 TYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI 730
TYPIDETMIH+GPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP+DNFNI
Sbjct: 123 TYPIDETMIHNGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPYDNFNI 182
Query: 731 EDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL 910
EDGHVLPGLIHKVHLAKS SALTVWGTG+PRRQFIYSLDLARLF+WVLREY +VEPIIL
Sbjct: 183 EDGHVLPGLIHKVHLAKSSDSALTVWGTGKPRRQFIYSLDLARLFIWVLREYSEVEPIIL 242
Query: 911 SVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDFRFTPFQ 1090
SVGEEDEVSI+EAAEAVVEAMDF+GEV FD+TKSDGQ+KKTASN KLR+YLPDFRFTPF+
Sbjct: 243 SVGEEDEVSIKEAAEAVVEAMDFNGEVTFDSTKSDGQYKKTASNGKLRSYLPDFRFTPFK 302
Query: 1091 XAVKETCAWFTDNYEEARK 1147
AVKETC WFTDNYE+ARK
Sbjct: 303 QAVKETCTWFTDNYEQARK 321
>ref|NP_080706.1| UDP-glucuronic acid decarboxylase 1 [Mus musculus].
Length = 420
Score = 70.9 bits (172), Expect = 2e-12
Identities = 83/321 (25%), Positives = 129/321 (40%), Gaps = 12/321 (3%)
Frame = +2
Query: 209 RILVTGGSGLVGRAI-QKVVADGARLPGEDWVFVSSK----------DADLTNAAQTRAL 355
RIL+TGG+G VG + K++ DG + D F K + +L N L
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 356 FEKVQPTHVIHLAAMVGGLFRNMKYN-LDFWRKNVHINDNVLHSAFEVGARKVVSCLSTC 532
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 150 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 204
Query: 533 IFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP 712
++ D +P E P Y KR+ + AY +Q G N FGP
Sbjct: 205 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
Query: 713 HDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQ 892
+ N DG V+ I L +G LTV+G+G R F Y DL L L +
Sbjct: 265 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVN-GLVALMNSNV 317
Query: 893 VEPIILSVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDF 1072
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 318 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 375
Query: 1073 RFTPFQXAVKETCAWFTDNYE 1135
P + + + +F E
Sbjct: 376 PVVPLEEGLNKAIHYFRKELE 396
>ref|NP_083854.3| dTDP-D-glucose 4,6-dehydratase [Mus musculus].
Length = 355
Score = 58.2 bits (139), Expect = 1e-08
Identities = 69/336 (20%), Positives = 139/336 (41%), Gaps = 28/336 (8%)
Frame = +2
Query: 209 RILVTGGSGLVG-RAIQKVVADG-----ARLPGEDWVF-------VSSKD------ADLT 331
R+LVTGG+G + I +V D L D+ VS+K D+
Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDIC 78
Query: 332 NAAQTRALFEKVQPTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKV 511
++ + LFE + V+H AA + + +F NV+ ++++A+E G K
Sbjct: 79 DSHFVKLLFEVEKIDIVLHFAAQTH-VDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKF 137
Query: 512 VSCLSTCIFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVI 691
+ + ++ DE+ P Y+ +K + ++Y++++
Sbjct: 138 IYVSTDEVYGGSLDQEFDESS-----PKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 192
Query: 692 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLW 871
+NV+GPH V+P I + + G+G RR F+Y+ D+ FL
Sbjct: 193 SSNVYGPHQY----PEKVIPKFISLLQ----HNRKCCIHGSGLQRRNFLYAADVVEAFLT 244
Query: 872 VLREYDQVEPIILSVGEEDEVSIREAAEAVVEAM---------DFHGEVIFDTTKSDGQF 1024
VL + + E I ++G E+S+ + A+ +++ + + + + D +D ++
Sbjct: 245 VLTKGEPGE--IYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRY 302
Query: 1025 KKTASNSKLRAYLPDFRFTPFQXAVKETCAWFTDNY 1132
+ + P P++ +K+T W+ N+
Sbjct: 303 PMKSEKIHSLGWKPK---VPWEEGIKKTVEWYRKNF 335
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,691,637
Number of extensions: 1328885
Number of successful extensions: 5854
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5778
Number of HSP's successfully gapped: 3
Length of query: 407
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 303
Effective length of database: 12,493,815
Effective search space: 3785625945
Effective search space used: 3785625945
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003050
(1223 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361932.1| PREDICTED: GDP-L-fucose synthase-like, parti... 452 e-127
Alignment gi|XP_003124905.2| PREDICTED: UDP-glucuronic acid decarboxylase... 70 2e-12
Alignment gi|XP_003131096.2| PREDICTED: dTDP-D-glucose 4,6-dehydratase-li... 52 7e-07
>ref|XP_003361932.1| PREDICTED: GDP-L-fucose synthase-like, partial [Sus scrofa].
Length = 272
Score = 452 bits (1163), Expect = e-127
Identities = 233/281 (82%), Positives = 239/281 (85%)
Frame = +2
Query: 191 EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ 370
EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ
Sbjct: 3 EPQRSTRILVTGGSGLVGRAIQKVVADGARLPGEDWVFVSSKDADLTNAAQTRALFEKVQ 62
Query: 371 PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKT 550
PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHIND+VLHSAFEVGARKVVSCLSTCIFPDKT
Sbjct: 63 PTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDSVLHSAFEVGARKVVSCLSTCIFPDKT 122
Query: 551 TYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPHDNFNI 730
TYPIDE+M+ + G + R A + G F P FGPHDNFNI
Sbjct: 123 TYPIDESMVRE-------IGRAXRGR----ARAACSGRPGPAFQTQAPPGXFGPHDNFNI 171
Query: 731 EDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL 910
EDGHVLPGLIHKVHLA RGSAL VWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL
Sbjct: 172 EDGHVLPGLIHKVHLATGRGSALMVWGTGRPRRQFIYSLDLARLFLWVLREYDQVEPIIL 231
Query: 911 SVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKT 1033
S G SIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKT
Sbjct: 232 SGGXXXXXSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKT 272
>ref|XP_003124905.2| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Sus scrofa].
Length = 420
Score = 70.5 bits (171), Expect = 2e-12
Identities = 83/321 (25%), Positives = 129/321 (40%), Gaps = 12/321 (3%)
Frame = +2
Query: 209 RILVTGGSGLVGRAI-QKVVADGARLPGEDWVFVSSK----------DADLTNAAQTRAL 355
RIL+TGG+G VG + K++ DG + D F K + +L N L
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 356 FEKVQPTHVIHLAAMVGGLFRNMKYN-LDFWRKNVHINDNVLHSAFEVGARKVVSCLSTC 532
+ +V + HLA+ N YN + + N N+L A VGAR +++ S
Sbjct: 150 YIEVD--QIYHLASPASP--PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE- 204
Query: 533 IFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGP 712
++ D +P E P Y KR+ + AY +Q G N FGP
Sbjct: 205 VYGDPEVHPQTEDYWGHVNPVGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 264
Query: 713 HDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLWVLREYDQ 892
+ N DG V+ I L +G LTV+G+G R F Y DL L L +
Sbjct: 265 RMHMN--DGRVVSNFI----LQALQGEPLTVYGSGSQTRAFQYVSDLVN-GLVALMNSNV 317
Query: 893 VEPIILSVGEEDEVSIREAAEAVVEAMDFHGEVIFDTTKSDGQFKKTASNSKLRAYLPDF 1072
P+ ++G +E +I E A+ + + E+ F + D K+ K + L
Sbjct: 318 SSPV--NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWE 375
Query: 1073 RFTPFQXAVKETCAWFTDNYE 1135
P + + + +F E
Sbjct: 376 PVVPLEEGLNKAIHYFRKELE 396
>ref|XP_003131096.2| PREDICTED: dTDP-D-glucose 4,6-dehydratase-like [Sus scrofa].
Length = 355
Score = 52.0 bits (123), Expect = 7e-07
Identities = 68/336 (20%), Positives = 135/336 (40%), Gaps = 28/336 (8%)
Frame = +2
Query: 209 RILVTGGSGLVG-RAIQKVVADG-----ARLPGEDWVF-------VSSKD------ADLT 331
R+LVTGG+G + I +V D L D+ +S K D+
Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQGDIC 78
Query: 332 NAAQTRALFEKVQPTHVIHLAAMVGGLFRNMKYNLDFWRKNVHINDNVLHSAFEVGARKV 511
++ + LFE + V+H AA + + +F NV+ +L +A E K
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTH-VDLSFVRAFEFTYVNVYGTHVLLSAAHEARVEKF 137
Query: 512 VSCLSTCIFPDKTTYPIDETMIHDGPPHSSNFGYSYAKRMIDVQNRAYFQQHGCTFTAVI 691
+ + ++ DE+ P Y+ +K + ++Y++++
Sbjct: 138 IYVSTDEVYGGSLDKEFDESS-----PKQPTNPYASSKAAAECFVQSYWERYKFPVVITR 192
Query: 692 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSRGSALTVWGTGRPRRQFIYSLDLARLFLW 871
+NV+GPH V+P I + + G+G R F+Y+ D+ FL
Sbjct: 193 SSNVYGPHQY----PEKVIPKFISLLQ----HNRKCCIHGSGLQTRNFLYATDVVEAFLT 244
Query: 872 VLREYDQVEPIILSVGEEDEVSIREAAEAVVE---------AMDFHGEVIFDTTKSDGQF 1024
VL++ E I ++G E+S+ + A+ +++ M+ + + D +D ++
Sbjct: 245 VLKKGKPGE--IYNIGTNFEMSVLQLAKELIQLIKETKSESEMENWVDYVNDRPTNDMRY 302
Query: 1025 KKTASNSKLRAYLPDFRFTPFQXAVKETCAWFTDNY 1132
+ + P P++ +K+T W+ +N+
Sbjct: 303 PMKSEKIHGLGWRPK---VPWKEGIKKTIEWYRENF 335
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,413,195
Number of extensions: 1067880
Number of successful extensions: 5405
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5311
Number of HSP's successfully gapped: 3
Length of query: 407
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,829,335
Effective search space: 2701776510
Effective search space used: 2701776510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003050
(1223 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895985.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 319 2e-84
>gb|GL895985.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4496
Length = 15277
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 171 caggtgcagccagcatgggcgagccccagaggtccacgcggatcctagtgactgggggct 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10648 caggtgcagccagcatgggcgagccccagaggtccacgcggatcctagtgactgggggct 10707
Query: 231 ccgggctggtgggcagagccatccagaaggtggtagcagatggagccaggctgcccggag 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10708 ccgggctggtgggcagagccatccagaaggtggtagcagatggagccaggctgcccggag 10767
Query: 291 aggactgggtgtttgtctcctccaaggatgccgacctcacg 331
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 10768 aggactgggtgtttgtctcctccaaggatgccgacctcacg 10808
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1094 gccgtgaaggagacctgtgcctggttcactgacaactacgaggaggcccggaagtgaagc 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14261 gccgtgaaggagacctgtgcctggttcactgacaactacgaggaggcccggaagtgaagc 14320
Query: 1154 acagctgcggccgcggggccaggggcctccttttcctggtgccctggcggctgctcag 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14321 acagctgcggccgcggggccaggggcctccttttcctggtgccctggcggctgctcag 14378
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 331 gaatgctgcacagacccgggcactgtttgaaaaggtccagcccacacacgtcatccatct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11121 gaatgctgcacagacccgggcactgtttgaaaaggtccagcccacacacgtcatccatct 11180
Query: 391 tgctgccatggtggggggcctcttccggaacatgaaatacaatttggacttctgg 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11181 tgctgccatggtggggggcctcttccggaacatgaaatacaatttggacttctgg 11235
Score = 168 bits (85), Expect = 5e-39
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 482 tcggccttcgaggtgggcgcgcgcaaggtggtctcctgtctatctacctgcatcttcccg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12523 tcggccttcgaggtgggcgcgcgcaaggtggtctcctgtctatctacctgcatcttccct 12582
Query: 542 gacaagaccacctaccctatcgacgagaccatg 574
|||||||||||||||||||||||||||| ||||
Sbjct: 12583 gacaagaccacctaccctatcgacgagagcatg 12615
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 704 ttcgggccgcatgacaacttcaacatcgaggacggccacgtgctgcccggcctcatccac 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12819 ttcgggccgcatgacaacttcaacatcgaggacggccacgtgctgcccggcctcatccac 12878
Query: 764 aaggtgcacctggcca 779
||||||||||||||||
Sbjct: 12879 aaggtgcacctggcca 12894
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 847 ggacctggctcggctcttcctctgggtcctgcgggaatacgaccaggtggagcccatcat 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13430 ggacctggctcggctcttcctctgggtcctgcgggaatacgaccaggtggagcccatcat 13489
Query: 907 cctgtcag 914
||||||||
Sbjct: 13490 cctgtcag 13497
Score = 115 bits (58), Expect = 6e-23
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 783 gccgcggctcggccctgacggtgtggggcacggggagaccccggaggcagttcatctact 842
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 13016 gccgcggctcagccctgatggtgtggggcacggggagaccccggaggcagttcatctact 13075
Query: 843 cactgg 848
||||||
Sbjct: 13076 cactgg 13081
Score = 115 bits (58), Expect = 6e-23
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 933 tgtccatccgggaggcggccgaagccgtggtggaggccatggacttccacggggaggtca 992
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13657 tgtccatccgggaggcggccgaggccgtggtggaggccatggacttccacggggaggtca 13716
Query: 993 tc 994
||
Sbjct: 13717 tc 13718
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 995 tttgataccaccaagtcagatgggcagtttaagaagacggcca 1037
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Sbjct: 13876 tttgataccaccaagtcagatgggcagtttaagaagacggcca 13918
Score = 73.8 bits (37), Expect = 2e-10
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 445 gaggaaaaacgtgcacatcaacgacaacgtgctgcactcgg 485
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Sbjct: 12382 gaggaaaaacgtgcacatcaacgacagcgtgctgcactcgg 12422
Score = 61.9 bits (31), Expect = 8e-07
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 actccacttcccagcagcgcccggggcgcct 34
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Sbjct: 9269 actccacttcccagcagcgcccggggcgcct 9299
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,742,270
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 11
Length of query: 1223
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1202
Effective length of database: 2,808,413,156
Effective search space: 3375712613512
Effective search space used: 3375712613512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)