Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003051
(2178 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179925.1| GPI transamidase component PIG-T [Bos taurus]. 1043 0.0
Alignment gi|XP_002692525.1| PREDICTED: phosphatidylinositol glycan ancho... 1043 0.0
>ref|NP_001179925.1| GPI transamidase component PIG-T [Bos taurus].
Length = 578
Score = 1043 bits (2698), Expect = 0.0
Identities = 501/556 (90%), Positives = 525/556 (94%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
W +AE PRDSLREELVITPLPSGDVAATFQFRTRWD +LQRE VSHYRLFPKALGQLISK
Sbjct: 20 WGRAEPPRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLSLTQGFWRTRYWGTPF+QAPSGAELW WFQDTVTDVD+SWKELSNVLSGIFC
Sbjct: 80 YSLRELHLSLTQGFWRTRYWGTPFLQAPSGAELWAWFQDTVTDVDESWKELSNVLSGIFC 139
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 140 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 199
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVH+RPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS
Sbjct: 200 GLSVLLKADRLFHTSYHSQAVHIRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 259
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLA+ESRVYVD+TSY QDNETLEVYP PLTTYQDVILGTR+TYAVYD
Sbjct: 260 LFRMFSRTLTEPCPLASESRVYVDVTSYGQDNETLEVYPPPLTTYQDVILGTRKTYAVYD 319
Query: 991 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 1170
LLD+AV++NSRSLN+QLKWKRPPENEAPPVPFL+AQRYVSGYGLQ+G+LSTLLYNTHPYR
Sbjct: 320 LLDAAVVSNSRSLNIQLKWKRPPENEAPPVPFLYAQRYVSGYGLQSGQLSTLLYNTHPYR 379
Query: 1171 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 1350
AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPA+DR+QPHLLEMLIQLPA+S+
Sbjct: 380 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPAQDRMQPHLLEMLIQLPASSI 439
Query: 1351 TKVSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVS 1530
TKVSI FERALLKWTEYTPDPNHGFY DW+ESPLFN+LFPVS
Sbjct: 440 TKVSIQFERALLKWTEYTPDPNHGFYVSPSVLSALVPSVVAAKPGDWEESPLFNSLFPVS 499
Query: 1531 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 1710
D SS+FVRLYTEPLLV+LPTPDFSMPYNV+CLTCTVVAVCYGSFYNLLTRTF IEEPR G
Sbjct: 500 DSSSYFVRLYTEPLLVSLPTPDFSMPYNVVCLTCTVVAVCYGSFYNLLTRTFQIEEPRKG 559
Query: 1711 GLAKRLANLIRRARGV 1758
GL KRLANLIRRARGV
Sbjct: 560 GLVKRLANLIRRARGV 575
>ref|XP_002692525.1| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class T
[Bos taurus].
Length = 578
Score = 1043 bits (2698), Expect = 0.0
Identities = 501/556 (90%), Positives = 525/556 (94%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
W +AE PRDSLREELVITPLPSGDVAATFQFRTRWD +LQRE VSHYRLFPKALGQLISK
Sbjct: 20 WGRAEPPRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLSLTQGFWRTRYWGTPF+QAPSGAELW WFQDTVTDVD+SWKELSNVLSGIFC
Sbjct: 80 YSLRELHLSLTQGFWRTRYWGTPFLQAPSGAELWAWFQDTVTDVDESWKELSNVLSGIFC 139
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 140 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 199
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVH+RPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS
Sbjct: 200 GLSVLLKADRLFHTSYHSQAVHIRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 259
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLA+ESRVYVD+TSY QDNETLEVYP PLTTYQDVILGTR+TYAVYD
Sbjct: 260 LFRMFSRTLTEPCPLASESRVYVDVTSYGQDNETLEVYPPPLTTYQDVILGTRKTYAVYD 319
Query: 991 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 1170
LLD+AV++NSRSLN+QLKWKRPPENEAPPVPFL+AQRYVSGYGLQ+G+LSTLLYNTHPYR
Sbjct: 320 LLDAAVVSNSRSLNIQLKWKRPPENEAPPVPFLYAQRYVSGYGLQSGQLSTLLYNTHPYR 379
Query: 1171 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 1350
AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPA+DR+QPHLLEMLIQLPA+S+
Sbjct: 380 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPAQDRMQPHLLEMLIQLPASSI 439
Query: 1351 TKVSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVS 1530
TKVSI FERALLKWTEYTPDPNHGFY DW+ESPLFN+LFPVS
Sbjct: 440 TKVSIQFERALLKWTEYTPDPNHGFYVSPSVLSALVPSVVAAKPGDWEESPLFNSLFPVS 499
Query: 1531 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 1710
D SS+FVRLYTEPLLV+LPTPDFSMPYNV+CLTCTVVAVCYGSFYNLLTRTF IEEPR G
Sbjct: 500 DSSSYFVRLYTEPLLVSLPTPDFSMPYNVVCLTCTVVAVCYGSFYNLLTRTFQIEEPRKG 559
Query: 1711 GLAKRLANLIRRARGV 1758
GL KRLANLIRRARGV
Sbjct: 560 GLVKRLANLIRRARGV 575
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,950,072
Number of extensions: 2157242
Number of successful extensions: 9438
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9318
Number of HSP's successfully gapped: 2
Length of query: 726
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 616
Effective length of database: 14,041,694
Effective search space: 8649683504
Effective search space used: 8649683504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003051
(2178 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534436.2| PREDICTED: similar to phosphatidylinositol glyc... 1034 0.0
>ref|XP_534436.2| PREDICTED: similar to phosphatidylinositol glycan, class T [Canis
familiaris].
Length = 579
Score = 1034 bits (2674), Expect = 0.0
Identities = 497/554 (89%), Positives = 519/554 (93%)
Frame = +1
Query: 97 QAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISKYS 276
+AE PRD+LREELVITPLPSGDVAATFQFRTRWD DLQREEVSHYRLFPKALGQLISKYS
Sbjct: 23 RAEPPRDALREELVITPLPSGDVAATFQFRTRWDSDLQREEVSHYRLFPKALGQLISKYS 82
Query: 277 LRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCAS 456
LRELHLS TQGFWRTRYWG PF+QAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCAS
Sbjct: 83 LRELHLSFTQGFWRTRYWGPPFLQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCAS 142
Query: 457 LNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKAGL 636
LNFIDSTNTVTPTASFKPLGLANGTDH FLRYAVLPREVVCTENLTPWKKLLPCSSKAGL
Sbjct: 143 LNFIDSTNTVTPTASFKPLGLANGTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKAGL 202
Query: 637 SVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWSLF 816
SVLLKADRLFHTSYHSQAVH+RPVCRNARCTS+SWELRQTLSVV+DAFVTGQGKKDWSLF
Sbjct: 203 SVLLKADRLFHTSYHSQAVHIRPVCRNARCTSISWELRQTLSVVYDAFVTGQGKKDWSLF 262
Query: 817 RMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYDLL 996
RMFSRTLTEPCPLA+ESRVYVD+TSY+QDNETLEV+P P TTYQDV LGT++TYAVYDLL
Sbjct: 263 RMFSRTLTEPCPLASESRVYVDVTSYNQDNETLEVHPTPTTTYQDVTLGTQKTYAVYDLL 322
Query: 997 DSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYRAF 1176
D+AVINNSR+LNLQ KWK PPENEAPPVPFLHAQRYVSGYGLQNGEL+TLLYNTHPYRAF
Sbjct: 323 DTAVINNSRNLNLQFKWKSPPENEAPPVPFLHAQRYVSGYGLQNGELNTLLYNTHPYRAF 382
Query: 1177 PVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSVTK 1356
PVL+LDTVPWYLRLYVHTLTITSKGKENKPSY+HYQPA+DRLQPHLLEMLIQLPANS TK
Sbjct: 383 PVLVLDTVPWYLRLYVHTLTITSKGKENKPSYVHYQPAQDRLQPHLLEMLIQLPANSATK 442
Query: 1357 VSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVSDG 1536
VSI FERALLKWTEYTPDPNHGFY DW+ESPLF +L+PVSD
Sbjct: 443 VSIQFERALLKWTEYTPDPNHGFYVSPSVLSALVPSMVAAKPVDWEESPLFKSLYPVSDS 502
Query: 1537 SSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGL 1716
SS+FVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEP TGGL
Sbjct: 503 SSYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPSTGGL 562
Query: 1717 AKRLANLIRRARGV 1758
AK LANLIRRARGV
Sbjct: 563 AKWLANLIRRARGV 576
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,929,537
Number of extensions: 2016726
Number of successful extensions: 9868
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9661
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 616
Effective length of database: 15,207,544
Effective search space: 9367847104
Effective search space used: 9367847104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003051
(2178 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057021.2| GPI transamidase component PIG-T isoform 1 prec... 1047 0.0
Alignment gi|NP_001171657.1| GPI transamidase component PIG-T isoform 2 p... 876 0.0
Alignment gi|NP_001171659.1| GPI transamidase component PIG-T isoform 4 p... 768 0.0
Alignment gi|NP_001171658.1| GPI transamidase component PIG-T isoform 3 p... 627 e-179
>ref|NP_057021.2| GPI transamidase component PIG-T isoform 1 precursor [Homo sapiens].
Length = 578
Score = 1047 bits (2708), Expect = 0.0
Identities = 504/556 (90%), Positives = 524/556 (94%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
W AE PRDSLREELVITPLPSGDVAATFQFRTRWD +LQRE VSHYRLFPKALGQLISK
Sbjct: 20 WCLAEPPRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLS TQGFWRTRYWG PF+QAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC
Sbjct: 80 YSLRELHLSFTQGFWRTRYWGPPFLQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 139
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
ASLNFIDSTNTVTPTASFKPLGLAN TDH FLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 140 ASLNFIDSTNTVTPTASFKPLGLANDTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKA 199
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVH+RPVCRNARCTS+SWELRQTLSVVFDAF+TGQGKKDWS
Sbjct: 200 GLSVLLKADRLFHTSYHSQAVHIRPVCRNARCTSISWELRQTLSVVFDAFITGQGKKDWS 259
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLA+ESRVYVDIT+Y+QDNETLEV+P P TTYQDVILGTR+TYA+YD
Sbjct: 260 LFRMFSRTLTEPCPLASESRVYVDITTYNQDNETLEVHPPPTTTYQDVILGTRKTYAIYD 319
Query: 991 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 1170
LLD+A+INNSR+LN+QLKWKRPPENEAPPVPFLHAQRYVSGYGLQ GELSTLLYNTHPYR
Sbjct: 320 LLDTAMINNSRNLNIQLKWKRPPENEAPPVPFLHAQRYVSGYGLQKGELSTLLYNTHPYR 379
Query: 1171 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 1350
AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPA+DRLQPHLLEMLIQLPANSV
Sbjct: 380 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPAQDRLQPHLLEMLIQLPANSV 439
Query: 1351 TKVSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVS 1530
TKVSI FERALLKWTEYTPDPNHGFY DW+ESPLFN+LFPVS
Sbjct: 440 TKVSIQFERALLKWTEYTPDPNHGFYVSPSVLSALVPSMVAAKPVDWEESPLFNSLFPVS 499
Query: 1531 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 1710
DGS++FVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG
Sbjct: 500 DGSNYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 559
Query: 1711 GLAKRLANLIRRARGV 1758
GLAKRLANLIRRARGV
Sbjct: 560 GLAKRLANLIRRARGV 575
>ref|NP_001171657.1| GPI transamidase component PIG-T isoform 2 precursor [Homo sapiens].
Length = 522
Score = 876 bits (2263), Expect = 0.0
Identities = 439/556 (78%), Positives = 460/556 (82%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
W AE PRDSLREELVITPLPSGDVAATFQFRTRWD +LQRE VSHYRLFPKALGQLISK
Sbjct: 20 WCLAEPPRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLS TQGF W T + P
Sbjct: 80 YSLRELHLSFTQGF-----WRTRYWGPPF------------------------------- 103
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
L + TDH FLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 104 --------------------LQAPSDTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKA 143
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVH+RPVCRNARCTS+SWELRQTLSVVFDAF+TGQGKKDWS
Sbjct: 144 GLSVLLKADRLFHTSYHSQAVHIRPVCRNARCTSISWELRQTLSVVFDAFITGQGKKDWS 203
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLA+ESRVYVDIT+Y+QDNETLEV+P P TTYQDVILGTR+TYA+YD
Sbjct: 204 LFRMFSRTLTEPCPLASESRVYVDITTYNQDNETLEVHPPPTTTYQDVILGTRKTYAIYD 263
Query: 991 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 1170
LLD+A+INNSR+LN+QLKWKRPPENEAPPVPFLHAQRYVSGYGLQ GELSTLLYNTHPYR
Sbjct: 264 LLDTAMINNSRNLNIQLKWKRPPENEAPPVPFLHAQRYVSGYGLQKGELSTLLYNTHPYR 323
Query: 1171 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 1350
AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPA+DRLQPHLLEMLIQLPANSV
Sbjct: 324 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPAQDRLQPHLLEMLIQLPANSV 383
Query: 1351 TKVSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVS 1530
TKVSI FERALLKWTEYTPDPNHGFY DW+ESPLFN+LFPVS
Sbjct: 384 TKVSIQFERALLKWTEYTPDPNHGFYVSPSVLSALVPSMVAAKPVDWEESPLFNSLFPVS 443
Query: 1531 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 1710
DGS++FVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG
Sbjct: 444 DGSNYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 503
Query: 1711 GLAKRLANLIRRARGV 1758
GLAKRLANLIRRARGV
Sbjct: 504 GLAKRLANLIRRARGV 519
>ref|NP_001171659.1| GPI transamidase component PIG-T isoform 4 precursor [Homo sapiens].
Length = 476
Score = 768 bits (1983), Expect = 0.0
Identities = 368/410 (89%), Positives = 386/410 (94%)
Frame = +1
Query: 529 TDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQAVHMRPV 708
TDH FLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQAVH+RPV
Sbjct: 64 TDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQAVHIRPV 123
Query: 709 CRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWSLFRMFSRTLTEPCPLAAESRVYVDIT 888
CRNARCTS+SWELRQTLSVVFDAF+TGQGKKDWSLFRMFSRTLTEPCPLA+ESRVYVDIT
Sbjct: 124 CRNARCTSISWELRQTLSVVFDAFITGQGKKDWSLFRMFSRTLTEPCPLASESRVYVDIT 183
Query: 889 SYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYDLLDSAVINNSRSLNLQLKWKRPPENE 1068
+Y+QDNETLEV+P P TTYQDVILGTR+TYA+YDLLD+A+INNSR+LN+QLKWKRPPENE
Sbjct: 184 TYNQDNETLEVHPPPTTTYQDVILGTRKTYAIYDLLDTAMINNSRNLNIQLKWKRPPENE 243
Query: 1069 APPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITSK 1248
APPVPFLHAQRYVSGYGLQ GELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITSK
Sbjct: 244 APPVPFLHAQRYVSGYGLQKGELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITSK 303
Query: 1249 GKENKPSYIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGFY 1428
GKENKPSYIHYQPA+DRLQPHLLEMLIQLPANSVTKVSI FERALLKWTEYTPDPNHGFY
Sbjct: 304 GKENKPSYIHYQPAQDRLQPHLLEMLIQLPANSVTKVSIQFERALLKWTEYTPDPNHGFY 363
Query: 1429 XXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSMP 1608
DW+ESPLFN+LFPVSDGS++FVRLYTEPLLVNLPTPDFSMP
Sbjct: 364 VSPSVLSALVPSMVAAKPVDWEESPLFNSLFPVSDGSNYFVRLYTEPLLVNLPTPDFSMP 423
Query: 1609 YNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 1758
YNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV
Sbjct: 424 YNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 473
Score = 81.3 bits (199), Expect = 3e-15
Identities = 40/50 (80%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQRE-EVSHYRL 237
W AE PRDSLREELVITPLPSGDVAATFQFRTRWD +LQRE + HY L
Sbjct: 20 WCLAEPPRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGDTDHYFL 69
>ref|NP_001171658.1| GPI transamidase component PIG-T isoform 3 precursor [Homo sapiens].
Length = 511
Score = 627 bits (1616), Expect = e-179
Identities = 299/325 (92%), Positives = 314/325 (96%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
W AE PRDSLREELVITPLPSGDVAATFQFRTRWD +LQRE VSHYRLFPKALGQLISK
Sbjct: 20 WCLAEPPRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLS TQGFWRTRYWG PF+QAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC
Sbjct: 80 YSLRELHLSFTQGFWRTRYWGPPFLQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 139
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
ASLNFIDSTNTVTPTASFKPLGLAN TDH FLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 140 ASLNFIDSTNTVTPTASFKPLGLANDTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKA 199
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVH+RPVCRNARCTS+SWELRQTLSVVFDAF+TGQGKKDWS
Sbjct: 200 GLSVLLKADRLFHTSYHSQAVHIRPVCRNARCTSISWELRQTLSVVFDAFITGQGKKDWS 259
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLA+ESRVYVDIT+Y+QDNETLEV+P P TTYQDVILGTR+TYA+YD
Sbjct: 260 LFRMFSRTLTEPCPLASESRVYVDITTYNQDNETLEVHPPPTTTYQDVILGTRKTYAIYD 319
Query: 991 LLDSAVINNSRSLNLQLKWKRPPEN 1065
LLD+A+INNSR+LN+QLKWKRPPEN
Sbjct: 320 LLDTAMINNSRNLNIQLKWKRPPEN 344
Score = 286 bits (731), Expect = 7e-77
Identities = 138/163 (84%), Positives = 143/163 (87%)
Frame = +1
Query: 1270 YIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGFYXXXXXXX 1449
YIHYQPA+DRLQPHLLEMLIQLPANSVTKVSI FERALLKWTEYTPDPNHGFY
Sbjct: 346 YIHYQPAQDRLQPHLLEMLIQLPANSVTKVSIQFERALLKWTEYTPDPNHGFYVSPSVLS 405
Query: 1450 XXXXXXXXXXXXDWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLT 1629
DW+ESPLFN+LFPVSDGS++FVRLYTEPLLVNLPTPDFSMPYNVICLT
Sbjct: 406 ALVPSMVAAKPVDWEESPLFNSLFPVSDGSNYFVRLYTEPLLVNLPTPDFSMPYNVICLT 465
Query: 1630 CTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 1758
CTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV
Sbjct: 466 CTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 508
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,347,092
Number of extensions: 1948478
Number of successful extensions: 9074
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8965
Number of HSP's successfully gapped: 7
Length of query: 726
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 616
Effective length of database: 14,671,124
Effective search space: 9037412384
Effective search space used: 9037412384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003051
(2178 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598540.2| GPI transamidase component PIG-T precursor [Mus... 1014 0.0
>ref|NP_598540.2| GPI transamidase component PIG-T precursor [Mus musculus].
Length = 582
Score = 1014 bits (2622), Expect = 0.0
Identities = 490/553 (88%), Positives = 512/553 (92%)
Frame = +1
Query: 100 AESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISKYSL 279
AE PRDSLREELVITPLPSGDVAATFQFRTRWD DLQRE VSHYRLFPKALGQLISKYSL
Sbjct: 27 AEGPRDSLREELVITPLPSGDVAATFQFRTRWDSDLQREGVSHYRLFPKALGQLISKYSL 86
Query: 280 RELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCASL 459
RELHLS TQGFWRTRYWG PF+QAPSGAELWVWFQDTVTDVDKSW+ELSNVLSGIFCASL
Sbjct: 87 RELHLSFTQGFWRTRYWGPPFLQAPSGAELWVWFQDTVTDVDKSWRELSNVLSGIFCASL 146
Query: 460 NFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLS 639
NFID+TNTVTPTASFKPLGLAN TD FLRYAVLPREVVCTENLTPWKKLLPCSSKAGLS
Sbjct: 147 NFIDATNTVTPTASFKPLGLANDTDDYFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLS 206
Query: 640 VLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWSLFR 819
VLLKADRLFHTSYHSQAVH+RP+CRNA CTS+SWELRQTLSVVFDAF+TGQGKKDWSLFR
Sbjct: 207 VLLKADRLFHTSYHSQAVHIRPICRNAHCTSISWELRQTLSVVFDAFITGQGKKDWSLFR 266
Query: 820 MFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYDLLD 999
MFSRTLTE CPLA++S VYVDIT YSQDNETLEV P P +TYQDVILGTR+TYAVYDL D
Sbjct: 267 MFSRTLTEACPLASQSLVYVDITGYSQDNETLEVSPPPTSTYQDVILGTRKTYAVYDLFD 326
Query: 1000 SAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYRAFP 1179
+A+INNSR+LN+QLKWKRPP+NEA PVPFLHAQRYVSGYGLQ GELSTLLYN+HPYRAFP
Sbjct: 327 TAMINNSRNLNIQLKWKRPPDNEALPVPFLHAQRYVSGYGLQKGELSTLLYNSHPYRAFP 386
Query: 1180 VLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSVTKV 1359
VLLLD VPWYLRLYVHTLTITSKGKENKPSYIHYQPA+DR QPHLLEMLIQLPANSVTKV
Sbjct: 387 VLLLDVVPWYLRLYVHTLTITSKGKENKPSYIHYQPAQDRQQPHLLEMLIQLPANSVTKV 446
Query: 1360 SIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVSDGS 1539
SI FERALLKWTEYTPDPNHGFY DW+ SPLFNTLFPVSDGS
Sbjct: 447 SIQFERALLKWTEYTPDPNHGFYVSPSVLSALVPSVVAAKPVDWEGSPLFNTLFPVSDGS 506
Query: 1540 SHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLA 1719
S+FVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEP++GGLA
Sbjct: 507 SYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPKSGGLA 566
Query: 1720 KRLANLIRRARGV 1758
KRLANLIRRARGV
Sbjct: 567 KRLANLIRRARGV 579
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,647,328
Number of extensions: 1629909
Number of successful extensions: 7397
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7329
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 617
Effective length of database: 12,343,635
Effective search space: 7616022795
Effective search space used: 7616022795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003051
(2178 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360061.1| PREDICTED: GPI transamidase component PIG-T ... 1102 0.0
Alignment gi|XP_003360063.1| PREDICTED: GPI transamidase component PIG-T ... 928 0.0
Alignment gi|XP_003360064.1| PREDICTED: GPI transamidase component PIG-T ... 804 0.0
Alignment gi|XP_003360062.1| PREDICTED: GPI transamidase component PIG-T ... 667 0.0
Alignment gi|XP_003360096.1| PREDICTED: hypothetical protein LOC100626091... 217 2e-56
>ref|XP_003360061.1| PREDICTED: GPI transamidase component PIG-T isoform 1 [Sus scrofa].
Length = 578
Score = 1102 bits (2849), Expect = 0.0
Identities = 537/556 (96%), Positives = 537/556 (96%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK
Sbjct: 20 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC
Sbjct: 80 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 139
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 140 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 199
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS
Sbjct: 200 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 259
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD
Sbjct: 260 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 319
Query: 991 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 1170
LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR
Sbjct: 320 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 379
Query: 1171 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 1350
AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV
Sbjct: 380 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 439
Query: 1351 TKVSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVS 1530
TKVSIHFERALLKWTEYTPDPNHGFY DWDESPLFNTLFPVS
Sbjct: 440 TKVSIHFERALLKWTEYTPDPNHGFYVSPSVLSALVPSVVAAKPVDWDESPLFNTLFPVS 499
Query: 1531 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 1710
DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG
Sbjct: 500 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 559
Query: 1711 GLAKRLANLIRRARGV 1758
GLAKRLANLIRRARGV
Sbjct: 560 GLAKRLANLIRRARGV 575
>ref|XP_003360063.1| PREDICTED: GPI transamidase component PIG-T isoform 3 [Sus scrofa].
Length = 522
Score = 928 bits (2398), Expect = 0.0
Identities = 471/556 (84%), Positives = 474/556 (85%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK
Sbjct: 20 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLSLTQGF W T + P
Sbjct: 80 YSLRELHLSLTQGF-----WRTRYWGTP-------------------------------- 102
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
FI + + GTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 103 ----FIQAPS---------------GTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 143
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS
Sbjct: 144 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 203
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD
Sbjct: 204 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 263
Query: 991 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 1170
LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR
Sbjct: 264 LLDSAVINNSRSLNLQLKWKRPPENEAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYR 323
Query: 1171 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 1350
AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV
Sbjct: 324 AFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSV 383
Query: 1351 TKVSIHFERALLKWTEYTPDPNHGFYXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVS 1530
TKVSIHFERALLKWTEYTPDPNHGFY DWDESPLFNTLFPVS
Sbjct: 384 TKVSIHFERALLKWTEYTPDPNHGFYVSPSVLSALVPSVVAAKPVDWDESPLFNTLFPVS 443
Query: 1531 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 1710
DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG
Sbjct: 444 DGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG 503
Query: 1711 GLAKRLANLIRRARGV 1758
GLAKRLANLIRRARGV
Sbjct: 504 GLAKRLANLIRRARGV 519
>ref|XP_003360064.1| PREDICTED: GPI transamidase component PIG-T isoform 4 [Sus scrofa].
Length = 476
Score = 804 bits (2077), Expect = 0.0
Identities = 392/411 (95%), Positives = 392/411 (95%)
Frame = +1
Query: 526 GTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQAVHMRP 705
GTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQAVHMRP
Sbjct: 63 GTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQAVHMRP 122
Query: 706 VCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWSLFRMFSRTLTEPCPLAAESRVYVDI 885
VCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWSLFRMFSRTLTEPCPLAAESRVYVDI
Sbjct: 123 VCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWSLFRMFSRTLTEPCPLAAESRVYVDI 182
Query: 886 TSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYDLLDSAVINNSRSLNLQLKWKRPPEN 1065
TSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYDLLDSAVINNSRSLNLQLKWKRPPEN
Sbjct: 183 TSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYDLLDSAVINNSRSLNLQLKWKRPPEN 242
Query: 1066 EAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITS 1245
EAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITS
Sbjct: 243 EAPPVPFLHAQRYVSGYGLQNGELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITS 302
Query: 1246 KGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGF 1425
KGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGF
Sbjct: 303 KGKENKPSYIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGF 362
Query: 1426 YXXXXXXXXXXXXXXXXXXXDWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSM 1605
Y DWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSM
Sbjct: 363 YVSPSVLSALVPSVVAAKPVDWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSM 422
Query: 1606 PYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 1758
PYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV
Sbjct: 423 PYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 473
Score = 91.3 bits (225), Expect = 2e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREE 219
WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREE
Sbjct: 20 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREE 62
>ref|XP_003360062.1| PREDICTED: GPI transamidase component PIG-T isoform 2 [Sus scrofa].
Length = 511
Score = 667 bits (1722), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK
Sbjct: 20 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 79
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 450
YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC
Sbjct: 80 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFC 139
Query: 451 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 630
ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA
Sbjct: 140 ASLNFIDSTNTVTPTASFKPLGLANGTDHSFLRYAVLPREVVCTENLTPWKKLLPCSSKA 199
Query: 631 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 810
GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS
Sbjct: 200 GLSVLLKADRLFHTSYHSQAVHMRPVCRNARCTSVSWELRQTLSVVFDAFVTGQGKKDWS 259
Query: 811 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 990
LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD
Sbjct: 260 LFRMFSRTLTEPCPLAAESRVYVDITSYSQDNETLEVYPLPLTTYQDVILGTRRTYAVYD 319
Query: 991 LLDSAVINNSRSLNLQLKWKRPPEN 1065
LLDSAVINNSRSLNLQLKWKRPPEN
Sbjct: 320 LLDSAVINNSRSLNLQLKWKRPPEN 344
Score = 297 bits (760), Expect = 2e-80
Identities = 144/163 (88%), Positives = 144/163 (88%)
Frame = +1
Query: 1270 YIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGFYXXXXXXX 1449
YIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGFY
Sbjct: 346 YIHYQPARDRLQPHLLEMLIQLPANSVTKVSIHFERALLKWTEYTPDPNHGFYVSPSVLS 405
Query: 1450 XXXXXXXXXXXXDWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLT 1629
DWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLT
Sbjct: 406 ALVPSVVAAKPVDWDESPLFNTLFPVSDGSSHFVRLYTEPLLVNLPTPDFSMPYNVICLT 465
Query: 1630 CTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 1758
CTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV
Sbjct: 466 CTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGV 508
>ref|XP_003360096.1| PREDICTED: hypothetical protein LOC100626091 [Sus scrofa].
Length = 211
Score = 217 bits (552), Expect = 2e-56
Identities = 102/103 (99%), Positives = 103/103 (100%)
Frame = +1
Query: 91 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 270
WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK
Sbjct: 51 WSQAESPRDSLREELVITPLPSGDVAATFQFRTRWDLDLQREEVSHYRLFPKALGQLISK 110
Query: 271 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTD 399
YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVT+
Sbjct: 111 YSLRELHLSLTQGFWRTRYWGTPFIQAPSGAELWVWFQDTVTE 153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,590,185
Number of extensions: 1700362
Number of successful extensions: 6001
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5928
Number of HSP's successfully gapped: 8
Length of query: 726
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 620
Effective length of database: 8,704,850
Effective search space: 5397007000
Effective search space used: 5397007000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003051
(2178 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 716 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 716 bits (361), Expect = 0.0
Identities = 361/361 (100%)
Strand = Plus / Minus
Query: 1518 cttcccagtctccgacggctccagccacttcgtgcggctctacacggagccgctgctggt 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53432804 cttcccagtctccgacggctccagccacttcgtgcggctctacacggagccgctgctggt 53432745
Query: 1578 gaacctgcccaccccggacttcagcatgccctacaacgtcatctgcctcacgtgcaccgt 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53432744 gaacctgcccaccccggacttcagcatgccctacaacgtcatctgcctcacgtgcaccgt 53432685
Query: 1638 ggtggccgtgtgctacggctccttctacaatctcctcacccgaaccttccacatcgagga 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53432684 ggtggccgtgtgctacggctccttctacaatctcctcacccgaaccttccacatcgagga 53432625
Query: 1698 gcccagaacgggcggcctggccaagcggctggccaacctgatccggcgcgcccggggcgt 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53432624 gcccagaacgggcggcctggccaagcggctggccaacctgatccggcgcgcccggggcgt 53432565
Query: 1758 cccgccgctctgagaccccgcacgccgcccggctgccgcatctccctgtcttgctgccac 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53432564 cccgccgctctgagaccccgcacgccgcccggctgccgcatctccctgtcttgctgccac 53432505
Query: 1818 ctgctctccgcagaggtggcttcggaaccacatggacccctggactgggccagggcccag 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53432504 ctgctctccgcagaggtggcttcggaaccacatggacccctggactgggccagggcccag 53432445
Query: 1878 a 1878
|
Sbjct: 53432444 a 53432444
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Minus
Query: 2 gggactactgggaggcggaagcagccgcaggcatggcggcggcggtgccgctttttctgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53446875 gggactactgggaggcggaagcagccgcaggcatggcggcggcggtgccgctttttctgt 53446816
Query: 62 cggtgctgctgctcctggggcctggcagctggagccaggcagaatccccacgcgatagcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53446815 cggtgctgctgctcctggggcctggcagctggagccaggcagaatccccacgcgatagcc 53446756
Query: 122 tgcgggaggagcttgtcatcaccccgctgccttctggggacgtagccgccacattccagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53446755 tgcgggaggagcttgtcatcaccccgctgccttctggggacgtagccgccacattccagt 53446696
Query: 182 tccgcacgcgctgggatttggatctgcagcgggaagaag 220
|||||||||||||||||||||||||||||||||||||||
Sbjct: 53446695 tccgcacgcgctgggatttggatctgcagcgggaagaag 53446657
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 2 gggactactgggaggcggaagcagccgcaggcatggcggcggcggtgccgctttttctgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67801737 gggactactgggaggcggaagcagccgcaggcatggcggcggcggtgccgctttttctgt 67801796
Query: 62 cggtgctgctgctcctggggcctggcagctggagccaggcagaatccccacgcgatagcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67801797 cggtgctgctgctcctggggcctggcagctggagccaggcagaatccccacgcgatagcc 67801856
Query: 122 tgcgggaggagcttgtcatcaccccgctgccttctggggacgtagccgccacattccagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67801857 tgcgggaggagcttgtcatcaccccgctgccttctggggacgtagccgccacattccagt 67801916
Query: 182 tccgcacgcgctgggatttggatctgcagcgggaagaag 220
|||||||||||||||||||||||||||||||||||||||
Sbjct: 67801917 tccgcacgcgctgggatttggatctgcagcgggaagaag 67801955
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 1066 gaggccccgcctgtgccctttctgcatgcccagcggtacgtgagtggctatgggctgcag 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53440749 gaggccccgcctgtgccctttctgcatgcccagcggtacgtgagtggctatgggctgcag 53440690
Query: 1126 aacggggagctgagcacgctgctgtacaacacccacccgtaccgggccttcccggtgctg 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53440689 aacggggagctgagcacgctgctgtacaacacccacccgtaccgggccttcccggtgctg 53440630
Query: 1186 ctgctggacaccgtgccctggtacctgcggctgtacgtgcacaccctcaccatcacctcc 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53440629 ctgctggacaccgtgccctggtacctgcggctgtacgtgcacaccctcaccatcacctcc 53440570
Query: 1246 aagggcaaggagaacaaaccaagt 1269
||||||||||||||||||||||||
Sbjct: 53440569 aagggcaaggagaacaaaccaagt 53440546
Score = 357 bits (180), Expect = 2e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 219 agtgtctcattataggctcttccccaaagccctggggcagttgatctccaagtattctct 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53446109 agtgtctcattataggctcttccccaaagccctggggcagttgatctccaagtattctct 53446050
Query: 279 gcgggagctgcacctgtcattaacccaaggcttctggaggactcgatattgggggacacc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53446049 gcgggagctgcacctgtcattaacccaaggcttctggaggactcgatattgggggacacc 53445990
Query: 339 cttcattcaggccccgtcaggtgcagagctctgggtctggttccaagacactgtcactga 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53445989 cttcattcaggccccgtcaggtgcagagctctgggtctggttccaagacactgtcactga 53445930
Score = 357 bits (180), Expect = 2e-95
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 219 agtgtctcattataggctcttccccaaagccctggggcagttgatctccaagtattctct 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67802503 agtgtctcattataggctcttccccaaagccctggggcagttgatctccaagtattctct 67802562
Query: 279 gcgggagctgcacctgtcattaacccaaggcttctggaggactcgatattgggggacacc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67802563 gcgggagctgcacctgtcattaacccaaggcttctggaggactcgatattgggggacacc 67802622
Query: 339 cttcattcaggccccgtcaggtgcagagctctgggtctggttccaagacactgtcactga 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67802623 cttcattcaggccccgtcaggtgcagagctctgggtctggttccaagacactgtcactga 67802682
Score = 337 bits (170), Expect = 2e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 897 ccaggacaatgagacattggaggtgtacccgctccccctcaccacgtaccaggatgtcat 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53441681 ccaggacaatgagacattggaggtgtacccgctccccctcaccacgtaccaggatgtcat 53441622
Query: 957 cctgggcacccggaggacctatgctgtctatgacttgctggactcggccgtgatcaacaa 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53441621 cctgggcacccggaggacctatgctgtctatgacttgctggactcggccgtgatcaacaa 53441562
Query: 1017 ctcacgcagcctcaacctccagctcaagtggaagagacccccagagaatg 1066
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53441561 ctcacgcagcctcaacctccagctcaagtggaagagacccccagagaatg 53441512
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1268 gttatatccactaccagcctgcccgggaccggctgcagccccacctcctggagatgctga 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53434191 gttatatccactaccagcctgcccgggaccggctgcagccccacctcctggagatgctga 53434132
Query: 1328 ttcagctgccagccaactcggtcaccaaggtctccatccactttgagcgggcgctgctga 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53434131 ttcagctgccagccaactcggtcaccaaggtctccatccactttgagcgggcgctgctga 53434072
Query: 1388 agtggactgagtacaccccggaccccaaccacggcttctatgtcag 1433
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53434071 agtggactgagtacaccccggaccccaaccacggcttctatgtcag 53434026
Score = 256 bits (129), Expect = 5e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 399 tgtggataaatcttggaaggagctcagtaacgtcctctcggggatcttctgcgcctctct 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53443415 tgtggataaatcttggaaggagctcagtaacgtcctctcggggatcttctgcgcctctct 53443356
Query: 459 caacttcatcgactccaccaacactgtcacacccaccgcctccttcaaacccctggggct 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53443355 caacttcatcgactccaccaacactgtcacacccaccgcctccttcaaacccctggggct 53443296
Query: 519 ggccaatgg 527
|||||||||
Sbjct: 53443295 ggccaatgg 53443287
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 526 ggcacggatcactccttcctgcgctatgcggtgctgccacgggaggttgtctgcaccgag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53442926 ggcacggatcactccttcctgcgctatgcggtgctgccacgggaggttgtctgcaccgag 53442867
Query: 586 aacctcaccccgtggaagaagctcttgccctgcagttccaagg 628
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53442866 aacctcaccccgtggaagaagctcttgccctgcagttccaagg 53442824
Score = 192 bits (97), Expect = 6e-46
Identities = 100/101 (99%)
Strand = Plus / Minus
Query: 801 agactggtccctcttccggatgttctcccgaaccctcacagagccctgccccctggctgc 860
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53441870 agactggtccctgttccggatgttctcccgaaccctcacagagccctgccccctggctgc 53441811
Query: 861 cgagagccgagtctacgtggacatcaccagctacagccagg 901
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 53441810 cgagagccgagtctacgtggacatcaccagctacagccagg 53441770
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 626 aggcgggcctctcggtgctgctgaaggctgatcgcctgttccacacgagctaccactccc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53442684 aggcgggcctctcggtgctgctgaaggctgatcgcctgttccacacgagctaccactccc 53442625
Query: 686 aggcagtgcatatgcgccctgtatgcaga 714
|||||||||||||||||||||||||||||
Sbjct: 53442624 aggcagtgcatatgcgccctgtatgcaga 53442596
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 715 aatgctcgctgtaccagcgtctcctgggagctgaggcagaccctttctgttgtgtttgat 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53442067 aatgctcgctgtaccagcgtctcctgggagctgaggcagaccctttctgttgtgtttgat 53442008
Query: 775 gcctttgtcaccgggcagggaaagaaag 802
||||||||||||||||||||||||||||
Sbjct: 53442007 gcctttgtcaccgggcagggaaagaaag 53441980
Score = 172 bits (87), Expect = 5e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 1431 cagcccttctgtcctcagcgccctcgtgcccagcgtggtggccgccaaacccgtggactg 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53433905 cagcccttctgtcctcagcgccctcgtgcccagcgtggtggccgccaaacccgtggactg 53433846
Query: 1491 ggacgagagccccctcttcaacacgct 1517
|||||||||||||||||||||||||||
Sbjct: 53433845 ggacgagagccccctcttcaacacgct 53433819
Score = 153 bits (77), Expect = 5e-34
Identities = 80/81 (98%)
Strand = Plus / Minus
Query: 2070 cctggatcactgggcaagctcaagaattggttatcactgtgcgggaggtggaatttactg 2129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 53432252 cctggatcactgggcaagctcaagaattggttatcactgtgtgggaggtggaatttactg 53432193
Query: 2130 gttgtggaataaaaagtgtct 2150
|||||||||||||||||||||
Sbjct: 53432192 gttgtggaataaaaagtgtct 53432172
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,682,404
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 15
Length of query: 2178
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2156
Effective length of database: 2,808,408,574
Effective search space: 6054928885544
Effective search space used: 6054928885544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)