Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003053
(597 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777052.1| TYRO protein tyrosine kinase-binding protein [B... 140 1e-33
>ref|NP_777052.1| TYRO protein tyrosine kinase-binding protein [Bos taurus].
Length = 109
Score = 140 bits (352), Expect = 1e-33
Identities = 72/87 (82%), Positives = 78/87 (89%), Gaps = 1/87 (1%)
Frame = +3
Query: 141 VQAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVD-VTRKQHIAE 317
V AQ EC+CS+VSPG+LAGIVLGDL+LTLLIALAVY LGRLVPR RGA + VTRKQHI E
Sbjct: 23 VLAQSECNCSSVSPGVLAGIVLGDLMLTLLIALAVYYLGRLVPRGRGATEAVTRKQHIPE 82
Query: 318 TESAYQELQGQRSDVYSDLNTQRQYYK 398
TES YQELQGQR+DVYSDLNTQR YYK
Sbjct: 83 TESPYQELQGQRTDVYSDLNTQRPYYK 109
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,223,445
Number of extensions: 924542
Number of successful extensions: 4914
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4877
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 102
Effective length of database: 14,471,838
Effective search space: 1476127476
Effective search space used: 1476127476
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003053
(597 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001184046.1| TYRO protein tyrosine kinase-binding protein... 136 1e-32
>ref|NP_001184046.1| TYRO protein tyrosine kinase-binding protein [Canis lupus
familiaris].
Length = 111
Score = 136 bits (343), Expect = 1e-32
Identities = 70/87 (80%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
Frame = +3
Query: 141 VQAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVD-VTRKQHIAE 317
+QAQ C+C VSPG+LAGIVLGDLVLTLLIALAVYSLGR+ PR RG+V+ VTRKQ I E
Sbjct: 25 IQAQDGCNCPVVSPGVLAGIVLGDLVLTLLIALAVYSLGRMFPRGRGSVEAVTRKQRITE 84
Query: 318 TESAYQELQGQRSDVYSDLNTQRQYYK 398
TES YQELQGQRSDVYSDLNTQR YYK
Sbjct: 85 TESPYQELQGQRSDVYSDLNTQRPYYK 111
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,187,734
Number of extensions: 920428
Number of successful extensions: 5299
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5254
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 18,874,504
Length adjustment: 97
Effective length of query: 102
Effective length of database: 15,640,912
Effective search space: 1595373024
Effective search space used: 1595373024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003053
(597 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_937758.1| TYRO protein tyrosine kinase-binding protein is... 141 4e-34
Alignment gi|NP_001166986.1| TYRO protein tyrosine kinase-binding protein... 137 9e-33
Alignment gi|NP_003323.1| TYRO protein tyrosine kinase-binding protein is... 137 9e-33
Alignment gi|NP_001166985.1| TYRO protein tyrosine kinase-binding protein... 132 2e-31
>ref|NP_937758.1| TYRO protein tyrosine kinase-binding protein isoform 2 precursor
[Homo sapiens].
Length = 112
Score = 141 bits (356), Expect = 4e-34
Identities = 70/85 (82%), Positives = 75/85 (88%)
Frame = +3
Query: 144 QAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVDVTRKQHIAETE 323
QAQ +CSCS VSPG+LAGIV+GDLVLT+LIALAVY LGRLVPR RGA + TRKQ I ETE
Sbjct: 28 QAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEATRKQRITETE 87
Query: 324 SAYQELQGQRSDVYSDLNTQRQYYK 398
S YQELQGQRSDVYSDLNTQR YYK
Sbjct: 88 SPYQELQGQRSDVYSDLNTQRPYYK 112
>ref|NP_001166986.1| TYRO protein tyrosine kinase-binding protein isoform 4 precursor
[Homo sapiens].
Length = 101
Score = 137 bits (344), Expect = 9e-33
Identities = 68/84 (80%), Positives = 73/84 (86%)
Frame = +3
Query: 147 AQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVDVTRKQHIAETES 326
A +CSCS VSPG+LAGIV+GDLVLT+LIALAVY LGRLVPR RGA + TRKQ I ETES
Sbjct: 18 AVSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEATRKQRITETES 77
Query: 327 AYQELQGQRSDVYSDLNTQRQYYK 398
YQELQGQRSDVYSDLNTQR YYK
Sbjct: 78 PYQELQGQRSDVYSDLNTQRPYYK 101
>ref|NP_003323.1| TYRO protein tyrosine kinase-binding protein isoform 1 precursor
[Homo sapiens].
Length = 113
Score = 137 bits (344), Expect = 9e-33
Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)
Frame = +3
Query: 144 QAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVD-VTRKQHIAET 320
QAQ +CSCS VSPG+LAGIV+GDLVLT+LIALAVY LGRLVPR RGA + TRKQ I ET
Sbjct: 28 QAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEAATRKQRITET 87
Query: 321 ESAYQELQGQRSDVYSDLNTQRQYYK 398
ES YQELQGQRSDVYSDLNTQR YYK
Sbjct: 88 ESPYQELQGQRSDVYSDLNTQRPYYK 113
>ref|NP_001166985.1| TYRO protein tyrosine kinase-binding protein isoform 3 precursor
[Homo sapiens].
Length = 102
Score = 132 bits (332), Expect = 2e-31
Identities = 68/85 (80%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Frame = +3
Query: 147 AQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVD-VTRKQHIAETE 323
A +CSCS VSPG+LAGIV+GDLVLT+LIALAVY LGRLVPR RGA + TRKQ I ETE
Sbjct: 18 AVSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEAATRKQRITETE 77
Query: 324 SAYQELQGQRSDVYSDLNTQRQYYK 398
S YQELQGQRSDVYSDLNTQR YYK
Sbjct: 78 SPYQELQGQRSDVYSDLNTQRPYYK 102
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,599,868
Number of extensions: 890800
Number of successful extensions: 4625
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4582
Number of HSP's successfully gapped: 4
Length of query: 199
Length of database: 18,297,164
Length adjustment: 97
Effective length of query: 102
Effective length of database: 15,099,656
Effective search space: 1540164912
Effective search space used: 1540164912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003053
(597 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035792.1| TYRO protein tyrosine kinase-binding protein pr... 135 2e-32
>ref|NP_035792.1| TYRO protein tyrosine kinase-binding protein precursor [Mus
musculus].
Length = 114
Score = 135 bits (340), Expect = 2e-32
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 4/90 (4%)
Frame = +3
Query: 141 VQAQRE----CSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVDVTRKQH 308
VQAQ + C CS+VSPG+LAGIVLGDLVLTLLIALAVYSLGRLV R +G + TRKQH
Sbjct: 25 VQAQSDTFPRCDCSSVSPGVLAGIVLGDLVLTLLIALAVYSLGRLVSRGQGTAEGTRKQH 84
Query: 309 IAETESAYQELQGQRSDVYSDLNTQRQYYK 398
IAETES YQELQGQR +VYSDLNTQRQYY+
Sbjct: 85 IAETESPYQELQGQRPEVYSDLNTQRQYYR 114
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,226,340
Number of extensions: 734869
Number of successful extensions: 3511
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3489
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,734,103
Effective search space: 1311612609
Effective search space used: 1311612609
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003053
(597 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999367.1| TYRO protein tyrosine kinase-binding protein pr... 169 1e-42
>ref|NP_999367.1| TYRO protein tyrosine kinase-binding protein precursor [Sus
scrofa].
Length = 108
Score = 169 bits (427), Expect = 1e-42
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +3
Query: 141 VQAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVDVTRKQHIAET 320
VQAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVDVTRKQHIAET
Sbjct: 23 VQAQRECSCSAVSPGILAGIVLGDLVLTLLIALAVYSLGRLVPRTRGAVDVTRKQHIAET 82
Query: 321 ESAYQELQGQRSDVYSDLNTQRQYYK 398
ESAYQELQGQRSDVYSDLNTQRQYYK
Sbjct: 83 ESAYQELQGQRSDVYSDLNTQRQYYK 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,891,538
Number of extensions: 644835
Number of successful extensions: 3190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3163
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 105
Effective length of database: 9,003,614
Effective search space: 945379470
Effective search space used: 945379470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003053
(597 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 446 e-123
>Sscrofa_Chr06
|| Length = 157765593
Score = 446 bits (225), Expect = e-123
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 334 aggagctccaaggccagaggtcagatgtctacagcgacctcaacacacagaggcagtatt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40712099 aggagctccaaggccagaggtcagatgtctacagcgacctcaacacacagaggcagtatt 40712040
Query: 394 acaaatgagcccaaatcaggacagtcatcaacccgatgcctggatccagtcattcctgat 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40712039 acaaatgagcccaaatcaggacagtcatcaacccgatgcctggatccagtcattcctgat 40711980
Query: 454 gcctgcccagcacccctttctgctcccaccaggatacggatccacagagtatcctccatg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40711979 gcctgcccagcacccctttctgctcccaccaggatacggatccacagagtatcctccatg 40711920
Query: 514 tcagacctctccccacgactgtccccaaataaacatggaggacct 558
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40711919 tcagacctctccccacgactgtccccaaataaacatggaggacct 40711875
Score = 272 bits (137), Expect = 2e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 155 agaatgcagctgctccgccgtgagccccggcatcctggcggggatcgtgctgggggatct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40714535 agaatgcagctgctccgccgtgagccccggcatcctggcggggatcgtgctgggggatct 40714476
Query: 215 ggtgctgaccctcctcatcgccctggctgtgtactccctgggtcggctggtccctcggac 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40714475 ggtgctgaccctcctcatcgccctggctgtgtactccctgggtcggctggtccctcggac 40714416
Query: 275 acgtggggccgtggacg 291
|||||||||||||||||
Sbjct: 40714415 acgtggggccgtggacg 40714399
Score = 258 bits (130), Expect = 3e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 2 cctttacttggttggacactacgccacatcccactggccttggactgtggtgtccagcag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40715212 cctttacttggttggacactacgccacatcccactggccttggactgtggtgtccagcag 40715153
Query: 62 cgtcatctgcatcatggggcgcctcggaccctccaatggactcctgcctctcctcctggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40715152 cgtcatctgcatcatggggcgcctcggaccctccaatggactcctgcctctcctcctggc 40715093
Query: 122 tgtgggtggt 131
||||||||||
Sbjct: 40715092 tgtgggtggt 40715083
Score = 83.8 bits (42), Expect = 1e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 291 gtgacccggaaacaacacatcgctgagacagagtctgcttatcagg 336
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 40714219 gtgacccggaaacagcacatcgctgagacagagtctgcttatcagg 40714174
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,652,906
Number of extensions: 410
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 4
Length of query: 597
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 576
Effective length of database: 2,808,413,156
Effective search space: 1617645977856
Effective search space used: 1617645977856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)